Citrus Sinensis ID: 044812
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | 2.2.26 [Sep-21-2011] | |||||||
| O82380 | 738 | Pentatricopeptide repeat- | yes | no | 0.952 | 0.705 | 0.350 | 2e-97 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.917 | 0.720 | 0.359 | 1e-95 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.884 | 0.697 | 0.345 | 1e-95 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.936 | 0.746 | 0.359 | 4e-95 | |
| Q9FNN7 | 511 | Pentatricopeptide repeat- | no | no | 0.833 | 0.892 | 0.360 | 1e-93 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.948 | 0.682 | 0.328 | 2e-90 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.793 | 0.555 | 0.366 | 1e-89 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.861 | 0.759 | 0.364 | 1e-88 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.897 | 0.714 | 0.348 | 2e-88 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.884 | 0.889 | 0.348 | 2e-87 |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 357 bits (915), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/525 (35%), Positives = 301/525 (57%), Gaps = 4/525 (0%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T ++ +A SL L + H + S+ FV+ LI Y CG + VF +I
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
+ KDV +NS+ING+V+ ++ALELF M +V T+ + +I++L G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+ + V++ LAN+++ MY KCG + LFD M +++ +W + G+A S
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
D+ +R V + M ++++ AW A+I+ Y QNG +EAL++F E+QL+ ++ N+++LV
Sbjct: 313 DYEA---AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
S L C+ + L G+ IH + + + + + +ALI MYSKCG L+ +R VF +S
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF-NSVEK 428
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
+D WS+++ G +HG G+EAV ++ KM KP+ +T V AC +GL++E +
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488
Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
++ + + Y I P + AC+VD+LGR+G L++A+ FI+ MP+ PS S+WGAL+ A +H
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548
Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
N + ++A L++LEP N +V LSN+YA +W+ V+ELR M+ GLKK PGCS I
Sbjct: 549 NLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
I G H F D AHP S +Y L +++ ++ P + ++
Sbjct: 609 EIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQV 653
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 185/514 (35%), Positives = 291/514 (56%), Gaps = 12/514 (2%)
Query: 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
Q HS I +S+ ++ + L+ Y+ CG +Q VF+ + ++V +NSLI + +N
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNG 232
Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILA 159
EAL++F M S V PD+ TLA++ + + VG +HG +K + D+IL+
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
N+ + MY KC + E +FD MP RNV + ISG+A + +R +F +M R
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS---TKAARLMFTKMAER 349
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
NV +W A+I GY QNG+ +EAL LF ++ ++ + P S ++L C+ L L G Q
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLK-RESVCPTHYSFANILKACADLAELHLGMQA 408
Query: 280 H------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
H GF + D+ + N+LIDMY KCG ++ VF +D ++W++++ G
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR-KMMERDCVSWNAMIIG 467
Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
+ +G G+EA+ L+ +M+ G KPD IT++GVLSACG +G + EG ++S+ + + P
Sbjct: 468 FAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAP 527
Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
+ C+VD+LGRAG L+ A I+ MP++P IWG+L++A +H N + + L
Sbjct: 528 LRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKL 587
Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
+++EP N YV LSN+YA +W+ V +R M+ G+ K PGCSWI I G H F V
Sbjct: 588 LEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVK 647
Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
DK+HP I+ +LD LI MR +G ++
Sbjct: 648 DKSHPRKKQIHSLLDILIAEMRPEQDHTEIGSLS 681
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/558 (34%), Positives = 304/558 (54%), Gaps = 74/558 (13%)
Query: 30 SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
SATH++ KQ H+++L LG + F+ TKLI A + G T ++ VF+ + ++ +
Sbjct: 30 SATHKAQ--LKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPW 87
Query: 90 NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
N++I GY +N+ +AL ++SNM + VSPD FT + K + L +G +H +
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 150 IGFVVDVILANSLMSMYVKC---------------------------------GKFSECL 176
+GF DV + N L+++Y KC G+ E L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 177 NLFDEMPQRNVG-SWNVRISG----------------HASSGDFSL-------------- 205
+F +M + +V W +S HAS L
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 206 -----VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
V ++ +FD+MK N+ W AMI+GY +NG EA+ +F EM KD + P+ +S+
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-VRPDTISI 326
Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
S + C+ + L + ++ + R + DV + +ALIDM++KCGS++ AR VF D +
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF-DRTL 385
Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
++D + WS+++ GYGLHG+ EA+ LY M G P+ +T +G+L AC SG++ EG
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
+N + + ++I P + ACV+D+LGRAG LD+A + IK MPV+P ++WGAL+SA H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
+ E+ + A + L ++P N +YV LSNLYA++R WD VAE+R MK++GL K GCSW
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 501 ISIHGKTHCFSVADKAHP 518
+ + G+ F V DK+HP
Sbjct: 565 VEVRGRLEAFRVGDKSHP 582
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 197/548 (35%), Positives = 303/548 (55%), Gaps = 36/548 (6%)
Query: 28 QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
QV T+ ++ + HS+I+ N + KL+ AYA ++ VF+ I ++V
Sbjct: 47 QVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106
Query: 88 LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
+ N +I YV N + E +++F M NV PD +T + K + +G IHG +
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166
Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF---- 203
K+G + + N L+SMY KCG SE + DEM +R+V SWN + G+A + F
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226
Query: 204 -------------------SL-----------VVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
SL V+ + +F +M ++++ +W MI Y++
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286
Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
N EA+ L+ M+ D EP+ VS+ SVLP C LS GK+IHG+ RK+L ++
Sbjct: 287 NAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345
Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
L NALIDMY+KCG L+ AR VFE+ ++D ++W++++S YG G+G +AV L++K+
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMK-SRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404
Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
G PD I V L+AC +GL+ EG + + + Y+I P E AC+VD+LGRAG++
Sbjct: 405 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 464
Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
A FI+ M +EP+ +WGAL+ A +H ++++ LA L QL PE YV LSN+YA
Sbjct: 465 AYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAK 524
Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
+ RW+ V +R +MK +GLKK+PG S + ++ H F V D++HP S IY LD L+
Sbjct: 525 AGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKK 584
Query: 534 MRGAAASP 541
M+ P
Sbjct: 585 MKELGYVP 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 272/460 (59%), Gaps = 4/460 (0%)
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
+F+ Q+ +LYN LI Y +H +E++ L++ + + + P T I S
Sbjct: 38 LFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSS 97
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
L+H + GF D +L++ Y K G +FDEM +R+V WN I+G
Sbjct: 98 ARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITG 157
Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
+ GD + +FD M R+NV +WT +I+G+ QNG+ EAL +FL M+ ++PN
Sbjct: 158 YQRRGDMKAAME---LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214
Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
+++VSVLP C++L L G+++ G+A ++ +CNA I+MYSKCG +D A+R+FE
Sbjct: 215 HITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFE 274
Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
+ ++ +W+S++ HGK EA+ L+ +M+ G KPD +T VG+L AC G++
Sbjct: 275 ELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVV 334
Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+G E++ S+ ++I P E C++D+LGR G+L A D IKTMP++P +WG L+ A
Sbjct: 335 KGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGA 394
Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
HGN E+ ++A ++L +LEP NP N V +SN+YA++ +WD V +R +MK + K+
Sbjct: 395 CSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAA 454
Query: 497 GCSW-ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
G S+ + + H F+V DK+HP S IY++L+++ M+
Sbjct: 455 GYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/563 (32%), Positives = 305/563 (54%), Gaps = 44/563 (7%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
S + + +V A + K+ KQ H G + FV + Y CG+ ++ VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 80 SIQHKDVYL-----------------------------------YNSLINGYVKNHGHNE 104
+ KDV +N +++G+ ++ H E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
A+ +F +++ PD T++++ G+ + LN+G LIHG IK G + D + ++++
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295
Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----N 220
MY K G ++LF++ G N I+G + +G LV ++ +F+ K + N
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG---LVDKALEMFELFKEQTMELN 352
Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
V +WT++I G QNG EAL LF EMQ+ ++PN V++ S+LP C ++ L G+ H
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAG-VKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
GFA+R L +V + +ALIDMY+KCG ++ ++ VF + K+ + W+S+++G+ +HGK
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF-NMMPTKNLVCWNSLMNGFSMHGKA 470
Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
E + ++ ++ KPD I+ +LSACG+ GL +EG + + + Y IKP E +C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530
Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
+V++LGRAG+L A D IK MP EP +WGAL+++ + N ++ ++A + L LEPEN
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590
Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
P YV LSN+YA+ W V +R M+ GLKK+PGCSWI + + + DK+HP
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQI 650
Query: 521 VSIYEMLDDLILIMRGAAASPHL 543
I E +D++ MR + P+L
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNL 673
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 272/478 (56%), Gaps = 44/478 (9%)
Query: 61 LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
+IT YA G+ +++ +F+ +DV+ + ++++GY++N EA ELF M N
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE--- 312
Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
+ N++++ YV+ + LFD
Sbjct: 313 ------------------------------------VSWNAMLAGYVQGERMEMAKELFD 336
Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
MP RNV +WN I+G+A G S ++ +FD+M +R+ +W AMI GY Q+G EA
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKIS---EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393
Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
L LF++M+ ++ N+ S S L TC+ ++ L GKQ+HG ++ + NAL+
Sbjct: 394 LRLFVQME-REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452
Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
MY KCGS++ A +F++ + KD ++W+++++GY HG G A+ + M G KPD
Sbjct: 453 MYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDA 511
Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
T+V VLSAC +GL+++G + + ++ Y + P ++ AC+VD+LGRAG L+ A + +K
Sbjct: 512 TMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKN 571
Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
MP EP +IWG L+ AS +HGN+E+ + A + +EPEN YV LSNLYASS RW V
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631
Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
+LR M+D+G+KK PG SWI I KTH FSV D+ HP I+ L++L L M+ A
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAG 689
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 177/485 (36%), Positives = 270/485 (55%), Gaps = 14/485 (2%)
Query: 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS------QLVFNSIQHKDVYLYNSLI 93
KQ H+++L G + + + TK ++ C T S Q+VF+ D +L+N +I
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLS---FCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87
Query: 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
G+ + +L L+ M S+ + +T ++ K + IH K+G+
Sbjct: 88 RGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYE 147
Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
DV NSL++ Y G F LFD +P+ + SWN I G+ +G + + +F
Sbjct: 148 NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT---LF 204
Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
+M +N +WT MI+GYVQ EAL LF EMQ D +EP+ VSL + L C+ L L
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-VEPDNVSLANALSACAQLGAL 263
Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
GK IH + + + D L LIDMY+KCG ++ A VF++ K W++++SG
Sbjct: 264 EQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISG 322
Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
Y HG G EA+ + +M +G KP++IT VL+AC +GL+ EG I+ S+ Y +KP
Sbjct: 323 YAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKP 382
Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
T E C+VD+LGRAG LD A FI+ MP++P+ IWGAL+ A +H N E+ + + L
Sbjct: 383 TIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 442
Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
I ++P + YV +N++A ++WD AE R +MK++G+ K PGCS IS+ G TH F
Sbjct: 443 IAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAG 502
Query: 514 DKAHP 518
D++HP
Sbjct: 503 DRSHP 507
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/496 (34%), Positives = 288/496 (58%), Gaps = 5/496 (1%)
Query: 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
+L K+ H ++ G SN +V L+ Y+LCG ++ VF+ +DV+ +N +I+
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMIS 209
Query: 95 GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
GY + + E++EL M + VSP TL + ++KD ++ +H +
Sbjct: 210 GYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269
Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
+ L N+L++ Y CG+ + +F M R+V SW + G+ G+ L +R FD
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL---ARTYFD 326
Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
QM R+ +WT MI+GY++ G +E+L +F EMQ I P++ ++VSVL C+ L L
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLE 385
Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
G+ I + + ++ +DV + NALIDMY KCG + A++VF D +D TW+++V G
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVGL 444
Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
+G+G EA+ ++ +M + +PD IT +GVLSAC SG++++ + + + + +RI+P+
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504
Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
C+VDMLGRAG + A + ++ MP+ P+ +WGAL+ AS +H + M +LA K ++
Sbjct: 505 LVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564
Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
+LEP+N + Y L N+YA +RW + E+R + D +KK+PG S I ++G H F D
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624
Query: 515 KAHPCSVSIYEMLDDL 530
K+H S IY L++L
Sbjct: 625 KSHLQSEEIYMKLEEL 640
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/493 (34%), Positives = 287/493 (58%), Gaps = 9/493 (1%)
Query: 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
H++I+ H + FV +LI + + VF+ + + +VYLY ++I+G+V +
Sbjct: 49 HAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRS 108
Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
+ + L+ M +++V PD++ + ++ K DL V IH +K+GF + +
Sbjct: 109 ADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKM 164
Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
M +Y K G+ +FDEMP R+ + V I+ ++ G + + +F +K ++
Sbjct: 165 MEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG---FIKEALELFQDVKIKDTV 221
Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
WTAMI+G V+N ++++AL LF EMQ+++ + N+ + V VL CS L L G+ +H F
Sbjct: 222 CWTAMIDGLVRNKEMNKALELFREMQMEN-VSANEFTAVCVLSACSDLGALELGRWVHSF 280
Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
+ + + NALI+MYS+CG ++ ARRVF +KD I++++++SG +HG E
Sbjct: 281 VENQRMELSNFVGNALINMYSRCGDINEARRVFRVMR-DKDVISYNTMISGLAMHGASVE 339
Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
A+ + MV G +P+ +T+V +L+AC GL++ GLE++NS+ + ++P E C+V
Sbjct: 340 AINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIV 399
Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
D+LGR G+L+ A FI+ +P+EP + G L+SA +HGN E+ + K L + E +
Sbjct: 400 DLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSG 459
Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
YV LSNLYASS +W E+R M+D G++K PGCS I + + H F V D AHP +
Sbjct: 460 TYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEA 519
Query: 523 IYEMLDDLILIMR 535
IY+ L +L I+R
Sbjct: 520 IYQRLQELNRILR 532
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| 296083752 | 545 | unnamed protein product [Vitis vinifera] | 0.912 | 0.915 | 0.675 | 0.0 | |
| 147765322 | 625 | hypothetical protein VITISV_019802 [Viti | 0.899 | 0.787 | 0.556 | 1e-163 | |
| 225433310 | 625 | PREDICTED: pentatricopeptide repeat-cont | 0.899 | 0.787 | 0.554 | 1e-160 | |
| 224107543 | 632 | predicted protein [Populus trichocarpa] | 0.903 | 0.781 | 0.538 | 1e-156 | |
| 356533824 | 630 | PREDICTED: pentatricopeptide repeat-cont | 0.888 | 0.771 | 0.523 | 1e-150 | |
| 357440905 | 627 | Pentatricopeptide repeat-containing prot | 0.884 | 0.771 | 0.495 | 1e-142 | |
| 449519723 | 636 | PREDICTED: pentatricopeptide repeat-cont | 0.775 | 0.666 | 0.473 | 1e-113 | |
| 449462493 | 613 | PREDICTED: pentatricopeptide repeat-cont | 0.775 | 0.691 | 0.471 | 1e-113 | |
| 359486044 | 689 | PREDICTED: putative pentatricopeptide re | 0.941 | 0.747 | 0.395 | 1e-106 | |
| 147805129 | 1740 | hypothetical protein VITISV_035038 [Viti | 0.936 | 0.294 | 0.377 | 1e-104 |
| >gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/509 (67%), Positives = 410/509 (80%), Gaps = 10/509 (1%)
Query: 9 TFALVTSRNYTSA-------TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
T L+ SR Y SA + L S TH+SLKLT+QSHS+ILSLG N ++TKL
Sbjct: 5 TCTLIPSRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKL 64
Query: 62 ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
I AYA+C P S+LVF+S+QHK+V+L+NSLINGY KN +NEA +LF+ M S+V PDD
Sbjct: 65 IFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDD 124
Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
FTL+T+SK+S E+ L G IHG SI+IGFV D ++ANS+MSMY KCG F E +FDE
Sbjct: 125 FTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDE 184
Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
M RN GSWNV I+G+A SG+ +V RRVFD+MK RNV++WTAMINGYV+NGD DEAL
Sbjct: 185 MTIRNSGSWNVLIAGYAVSGN---LVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEAL 241
Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
LF +MQ+ D IEPN+VSLVSVLP CSS GL G+QIHGFA+RKELN++VSLCNALIDM
Sbjct: 242 SLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDM 301
Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
YSKCGSLD ARRVFED S KDAI+WSS++SGYGLHGKG EA+LLY+KM+ G +PD+IT
Sbjct: 302 YSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMIT 361
Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
VG+LSAC RSGL+NEGL IY+SVIN Y I+PT EI AC+VDMLGRAGQLD ALDFIK M
Sbjct: 362 TVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAM 421
Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
PVEP PS+WGALVS S++HG+ EMQ+LAY+ LIQLEPENPSNYVS+SNLYASSRRWDAVA
Sbjct: 422 PVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVA 481
Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
E+R MMKD+ L+K PGCSWISI+ KTHCF
Sbjct: 482 EVRRMMKDKRLRKVPGCSWISINNKTHCF 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 297/534 (55%), Positives = 369/534 (69%), Gaps = 42/534 (7%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T+ +VS+ +L K H + + G +S+ V+ +++ Y CG +S+ VF+ +
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEM 185
Query: 82 QHKDVYLYNSLINGYVKNHGHN---EALELFSNMYYSNVSPDDFTLATISKL-SGEIKDL 137
++ +N LI GY + N E E M V PD +T++++ L G++
Sbjct: 186 TIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKW 245
Query: 138 NVGMLIHGLSIK----IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
+ G +H +K +G DV L L+ MY + K
Sbjct: 246 DYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNK---------------------- 283
Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
VV RRVFD+MK RNV++WTAMINGYV+NGD DEAL LF +MQ+ D +
Sbjct: 284 ------------VVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGV 331
Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
EPN+VSLVSVLP CSS GL G+QIHGFA+RKELN++VSLCNALIDMYSKCGSLD ARR
Sbjct: 332 EPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARR 391
Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
VFED S KDAI+WSS++SGYGLHGKG EA+LLY+KM+ G +PD+IT VG+LSACGRSG
Sbjct: 392 VFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSG 451
Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
L+NEGL IY+SVIN Y I+PT EICAC+VDMLGRAGQLDRALDFIK +PVEP PS+WGAL
Sbjct: 452 LVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGAL 511
Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
VS S++HG+ EMQ+LAY+ LIQLEP+NPSNYVS+SNLYASSRRWDAVAE+R MMKD+ L+
Sbjct: 512 VSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLR 571
Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
K PGCSWISI+ KTHCF VADKAHP S SIY MLDDL+L M A SPHL T
Sbjct: 572 KVPGCSWISINNKTHCFYVADKAHPSSTSIYNMLDDLLLTMNDAICSPHLETST 625
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 296/534 (55%), Positives = 366/534 (68%), Gaps = 42/534 (7%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T+ +VS+ +L K H + + +G +S+ V+ +++ Y CG +S+ VF+ +
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEM 185
Query: 82 QHKDVYLYNSLINGYVKNHGHN---EALELFSNMYYSNVSPDDFTLATISKL-SGEIKDL 137
++ +N LI GY + N E E M V PD +T++++ L G+
Sbjct: 186 TIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKW 245
Query: 138 NVGMLIHGLSIK----IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
+ G +H +K +G DV L L+ MY + K
Sbjct: 246 DYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNK---------------------- 283
Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
VV RRVFD+MK RNV++WTAMINGYV+NGD DEAL LF +MQ+ D I
Sbjct: 284 ------------VVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGI 331
Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
EPN+VSLVSVLP CSS GL G+QIHGFA+RKELN++VSLCNALIDMYSKCGSLD ARR
Sbjct: 332 EPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARR 391
Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
VFED S KDAI+WSS++SGYGLHGKG EA+LLY+KM+ G +PD+IT VG+LSAC RSG
Sbjct: 392 VFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSG 451
Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
L+NEGL IY+SVIN Y I+PT EI AC+VDMLGRAGQLD ALDFIK MPVEP PS+WGAL
Sbjct: 452 LVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGAL 511
Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
VS S++HG+ EMQ+LAY+ LIQLEPENPSNYVS+SNLYASSRRWDAVAE+R MMKD+ L+
Sbjct: 512 VSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLR 571
Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
K PGCSWISI+ KTHCF VADKAHP + SIY MLDDL+L M A SPHL T
Sbjct: 572 KVPGCSWISINNKTHCFYVADKAHPSATSIYNMLDDLLLTMNDAICSPHLETST 625
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa] gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 290/539 (53%), Positives = 372/539 (69%), Gaps = 45/539 (8%)
Query: 17 NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
+YT AT+ +V L K H + L G + + V+ L++ Y+ CG +
Sbjct: 128 DYTLATMS---KVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFGECLK 184
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHN---EALELFSNMYYSNVSPDDFTLATISKL-SG 132
+F+ + ++V +N +++GY + N E +M + PD FT++++ L +G
Sbjct: 185 LFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLTLCNG 244
Query: 133 EIKDLNVGMLIHGLSIKIGFVV----DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
+ + G +HG ++I V +V L L+ MY + + +VG
Sbjct: 245 HMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRV-------------DVG 291
Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
RRVFD+M+ RNVYAWTAMING+VQNG L+E LVLF EMQ
Sbjct: 292 ---------------------RRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQ 330
Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
++D +EPNKVSLVSVLP CS++ GL+G KQIHG+AIRK+ N+DVSLCNALIDMYSKCGSL
Sbjct: 331 VRDGVEPNKVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSL 390
Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
D A++VFE SF +D I+WSS++SGYGLHGKG EAV +YNKM+ LG+KPD+ITIVGVLSA
Sbjct: 391 DHAKQVFEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSA 450
Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
C R+GL++EGL IY S IN YRIKPT EICACVVDMLGR+GQL +ALD+IKTMP+EPSPS
Sbjct: 451 CSRAGLVDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPS 510
Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
+WGA+VSAS++HGNSEMQDLAY+ L+QLEPENPSNYVSLSNL+ASSRRWD V+E+RTMMK
Sbjct: 511 VWGAVVSASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMK 570
Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
DR L K+PGCSWISI+ TH F ADK HPCS SIYE+L LIL+M+G A S T
Sbjct: 571 DRCLTKTPGCSWISINNTTHFFYAADKLHPCSKSIYELLGGLILLMKGPAVSHDFENFT 629
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 279/533 (52%), Positives = 350/533 (65%), Gaps = 47/533 (8%)
Query: 17 NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
+YT ATV +V L K H + + +G +S+ V L++ Y CG+ +
Sbjct: 129 DYTLATV---FKVFGELEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVK 185
Query: 77 VFNSIQHKDVYLYNSLINGYVKNH-----GHNEALELFSNMYYSNVSPDDFTLATISKLS 131
VF+ H++V +N +I+G H++ F M D FT+A++ +
Sbjct: 186 VFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVC 245
Query: 132 -GEIKDLNVGMLIHGLSIKIGFVV----DVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
G+ + G +H +K G + DV L +SL+ MY + K
Sbjct: 246 CGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSKK--------------- 290
Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
VV RRVFDQMK RNVY WTAMINGYVQNG D+ALVL
Sbjct: 291 -------------------VVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRA 331
Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
MQ+KD I PNKVSL+S LP C L GL GGKQIHGF+I+ ELN DVSLCNALIDMYSKCG
Sbjct: 332 MQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCG 391
Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
SLD ARR FE SS+ KDAITWSS++S YGLHG+G EA++ Y KM+ G KPD+IT+VGVL
Sbjct: 392 SLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVL 451
Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
SAC +SGL++EG+ IY S++ Y IKPT EICACVVDMLGR+GQLD+AL+FIK MP++P
Sbjct: 452 SACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPG 511
Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
PS+WG+L++ASV+HGNS +DLAY+ L++LEPENPSNY+SLSN YAS RRWD V E+RT+
Sbjct: 512 PSVWGSLLTASVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTI 571
Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
MK+RGLKK PGCSWI+I GKTH FSVADKAHP S IYEML DL+ IM A
Sbjct: 572 MKERGLKKVPGCSWITISGKTHSFSVADKAHPSSSLIYEMLGDLVSIMTDGCA 624
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/535 (49%), Positives = 355/535 (66%), Gaps = 51/535 (9%)
Query: 17 NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
+YT AT+ +VS + L L K H + L +G +S+ V +++ Y C + +
Sbjct: 126 DYTLATIS---KVSGEIQDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMK 182
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHNEAL-----ELFSNMYYSNVSPDDFTLATISKL- 130
VF+ + ++V +N +I+G + +L F M + D FT+A++ +
Sbjct: 183 VFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMC 242
Query: 131 ---SGEI---KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
G+ ++L+ ++ +GL +K+ DV + +SL+ MY + K
Sbjct: 243 CDSDGKFDHGRELHCYLVKNGLDLKM--CSDVHMGSSLIDMYSRSNK------------- 287
Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
+V SRRVFDQMK RN+Y WTAMINGYVQNG + AL+LF
Sbjct: 288 ---------------------LVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILF 326
Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
EMQ KDRI PN+VSLVSVLP C L+GL GGKQ+H F+I+ E N +SL NALIDMY+K
Sbjct: 327 REMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAK 386
Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
CGSLD ARRVF++ S++KDAITWSSI+S YGLHGKG EA+ Y +M+ G KPD+IT+VG
Sbjct: 387 CGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVG 446
Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
VLSAC RSGL++EG+ IYNS+ Y +KP+ EIC CVVD+LGR+GQLD+ALDFI+ MP+
Sbjct: 447 VLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPII 506
Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
P PS+WG+L++ASV+HGNS +DLAY+ L++LEPENPSNY+SLSN YASSRRWD + E+R
Sbjct: 507 PGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVR 566
Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
+MMK+RGL+K PG SWI+I K H F+VADK HP S SIYEMLDDL+ IM A
Sbjct: 567 SMMKERGLRKVPGISWITISDKNHFFTVADKVHPSSSSIYEMLDDLVSIMTDGCA 621
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519723|ref|XP_004166884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/456 (47%), Positives = 295/456 (64%), Gaps = 32/456 (7%)
Query: 38 LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
+ K H + L LG IS+ V+ LI+ Y G+ +S +FN + ++ +N L+ GY
Sbjct: 149 VAKSIHGKSLRLGFISDIIVANSLISMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYA 208
Query: 98 KNHGH---NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
EA E NM + PD FT++++ + G G L +G + V
Sbjct: 209 SFSDCFYVKEAWEAVRNMQIDGIKPDAFTISSLLQFCGHPN----GKLSYGKELHCYIVK 264
Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
+ + +S ++ CG EM R + + SR VFD
Sbjct: 265 NELDLDSGSKFHIGCG--------LIEMYSRENNT-----------------IASRYVFD 299
Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
Q+K RN+Y WTAM++GY QN D D+AL+LF EMQ+KD I PNKVSLVS+LP CS GL
Sbjct: 300 QIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLM 359
Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
GKQIHG+AIRKE ++DV+LCNALID YSKCGSL+ A++VFE SF KD I+W++++S Y
Sbjct: 360 NGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAY 419
Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
GL+G +++ LYN MV KPD IT++ VLSACGRSGL+NEGL++YN+ + ++I+PT
Sbjct: 420 GLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLYNTAVQEHKIEPT 479
Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
EICA VV MLG +G+L++A FI TM VEP P +WGALVSAS+ + N+EM +LAY+ L+
Sbjct: 480 AEICAAVVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIKYRNNEMLELAYRYLV 539
Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
+LEP+NPSN++SLSNLYAS+ RWDAVAELR MK+R
Sbjct: 540 ELEPDNPSNFISLSNLYASASRWDAVAELRNTMKER 575
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462493|ref|XP_004148975.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/456 (47%), Positives = 295/456 (64%), Gaps = 32/456 (7%)
Query: 38 LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
+ K H + L LG IS+ V+ L++ Y G+ +S +FN + ++ +N L+ GY
Sbjct: 149 VAKSIHGKSLRLGFISDIIVANSLMSMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYA 208
Query: 98 KNHGH---NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
EA E NM + PD FT++++ + G G L +G + V
Sbjct: 209 SFSDCFYVKEAWEAVRNMQLDGIKPDAFTISSLLQFCGHPN----GKLSYGKELHCYIVK 264
Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
+ + +S ++ CG EM R + + SR VFD
Sbjct: 265 NELDLDSGSKFHIGCG--------LIEMYSRENNT-----------------IASRYVFD 299
Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
Q+K RN+Y WTAM++GY QN D D+AL+LF EMQ+KD I PNKVSLVS+LP CS GL
Sbjct: 300 QIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLM 359
Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
GKQIHG+AIRKE ++DV+LCNALID YSKCGSL+ A++VFE SF KD I+W++++S Y
Sbjct: 360 NGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAY 419
Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
GL+G +++ LYN MV KPD IT++ VLSACGRSGL+NEGL++YN+ + ++I+PT
Sbjct: 420 GLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLYNTAVQEHKIEPT 479
Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
EICA VV MLG +G+L++A FI TM VEP P +WGALVSAS+ + N+EM +LAY+ L+
Sbjct: 480 AEICAAVVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIKYRNNEMLELAYRYLV 539
Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
+LEP+NPSN++SLSNLYAS+ RWDAVAELR MK+R
Sbjct: 540 ELEPDNPSNFISLSNLYASASRWDAVAELRNTMKER 575
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/534 (39%), Positives = 321/534 (60%), Gaps = 19/534 (3%)
Query: 23 VQHF---------LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
+QHF Q H +KL +Q+H+QI+ G N F++ K++ YA G
Sbjct: 71 LQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDS 130
Query: 74 SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA----LELFSNMYYSNVSPDDFTLATISK 129
+ +VF+ I + LYNS+I Y + HG LE ++ M++ + D+FTL + K
Sbjct: 131 AVVVFDRIDNPSSLLYNSIIRAYTR-HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLK 189
Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
++ + +G +HG +++G D + SL+ MYVKCG + LFD+M R++ S
Sbjct: 190 SCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMAS 249
Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM-Q 248
WN I+G+ G+ + + +F++M+ RN+ +WTAMI+GY QNG ++AL LF EM Q
Sbjct: 250 WNALIAGYMKEGEIGV---AEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQ 306
Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
++PN V++VSVLP C+ L G++IH FA L+ + S+ AL MY+KC SL
Sbjct: 307 DGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSL 366
Query: 309 DCARRVFEDSSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
AR F+ + N K+ I W+++++ Y HG G EAV ++ M+ G +PD +T +G+LS
Sbjct: 367 VEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLS 426
Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
C SGLI+ GL +N + + ++P E ACVVD+LGRAG+L A + I MP++ P
Sbjct: 427 GCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGP 486
Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
S+WGAL++A H N E+ +LA + L LEP+N NYV LSNLYA + W+ V +LR ++
Sbjct: 487 SVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALL 546
Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
K +G+KKSPGCSWI I+GK+H F ADK+HP + IY+ L+ L ++ A P
Sbjct: 547 KYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIP 600
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/551 (37%), Positives = 316/551 (57%), Gaps = 39/551 (7%)
Query: 28 QVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
Q+ + +K K+ HS+I + H SNP + KL+ AYA+CG+P ++ +F+ I K+
Sbjct: 1032 QILDKNPDIKYLKKLHSKIC-IDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKN 1090
Query: 86 VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
V +N +I YV NH +++AL +F NM + PD +T + K S +DL VGM IH
Sbjct: 1091 VVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHA 1150
Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
+++G ++V + N L+SMY KCG E + DZMP R+V SWN ++G A +G F
Sbjct: 1151 AVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDD 1210
Query: 206 VVRS----------------------------------RRVFDQMKRRNVYAWTAMINGY 231
+ + +F ++ +++ +W MI Y
Sbjct: 1211 ALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVY 1270
Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
+ N EA+ +FL+M+ ++P+ +S+ SVLP C L L G++IH + +RK L +
Sbjct: 1271 MNNSMPAEAVDIFLQME-DHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPN 1329
Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
+ L NALIDMY+KCG L+ AR VF+ F +D ++W+S++S YG++GKG +AV L+++M
Sbjct: 1330 LLLENALIDMYAKCGCLEYAREVFDQMKF-RDVVSWTSMISAYGMNGKGRDAVSLFSRMQ 1388
Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
LG PD I V VLSAC +GL++EG + + +I P E C+VD+LGRAGQ+
Sbjct: 1389 DLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQV 1448
Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
D A FIK MP+EP+ +WGAL+SA ++ N + LA L QL PE YV LSN+Y
Sbjct: 1449 DEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIY 1508
Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
A + RW+ V +R++MK +G+KK PG S + + H F D++HP S IYE LD L+
Sbjct: 1509 AKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLV 1568
Query: 532 LIMRGAAASPH 542
M+ A P
Sbjct: 1569 GKMKEAGYVPE 1579
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.952 | 0.705 | 0.350 | 9.3e-91 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.917 | 0.720 | 0.359 | 2.2e-89 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.893 | 0.956 | 0.348 | 8.6e-88 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.590 | 0.518 | 0.372 | 4.4e-86 | |
| TAIR|locus:2083631 | 689 | AT3G15130 "AT3G15130" [Arabido | 0.581 | 0.461 | 0.366 | 2.4e-85 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.597 | 0.392 | 0.381 | 6.4e-85 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.941 | 0.677 | 0.337 | 1.3e-84 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.570 | 0.360 | 0.378 | 1.3e-83 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.610 | 0.384 | 0.356 | 1.5e-83 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.619 | 0.384 | 0.343 | 1.6e-83 |
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 184/525 (35%), Positives = 301/525 (57%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T ++ +A SL L + H + S+ FV+ LI Y CG + VF +I
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
+ KDV +NS+ING+V+ ++ALELF M +V T+ + +I++L G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+ + V++ LAN+++ MY KCG + LFD M +++ +W + G+A S
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
D+ +R V + M ++++ AW A+I+ Y QNG +EAL++F E+QL+ ++ N+++LV
Sbjct: 313 DYEA---AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
S L C+ + L G+ IH + + + + + +ALI MYSKCG L+ +R VF +S
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF-NSVEK 428
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
+D WS+++ G +HG G+EAV ++ KM KP+ +T V AC +GL++E +
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488
Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
++ + + Y I P + AC+VD+LGR+G L++A+ FI+ MP+ PS S+WGAL+ A +H
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548
Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
N + ++A L++LEP N +V LSN+YA +W+ V+ELR M+ GLKK PGCS I
Sbjct: 549 NLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
I G H F D AHP S +Y L +++ ++ P + ++
Sbjct: 609 EIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQV 653
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 185/514 (35%), Positives = 291/514 (56%)
Query: 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
Q HS I +S+ ++ + L+ Y+ CG +Q VF+ + ++V +NSLI + +N
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNG 232
Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILA 159
EAL++F M S V PD+ TLA++ + + VG +HG +K + D+IL+
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
N+ + MY KC + E +FD MP RNV + ISG+A + +R +F +M R
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA---ARLMFTKMAER 349
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
NV +W A+I GY QNG+ +EAL LF ++ ++ + P S ++L C+ L L G Q
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLK-RESVCPTHYSFANILKACADLAELHLGMQA 408
Query: 280 H------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
H GF + D+ + N+LIDMY KCG ++ VF +D ++W++++ G
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR-KMMERDCVSWNAMIIG 467
Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
+ +G G+EA+ L+ +M+ G KPD IT++GVLSACG +G + EG ++S+ + + P
Sbjct: 468 FAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAP 527
Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
+ C+VD+LGRAG L+ A I+ MP++P IWG+L++A +H N + + L
Sbjct: 528 LRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKL 587
Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
+++EP N YV LSN+YA +W+ V +R M+ G+ K PGCSWI I G H F V
Sbjct: 588 LEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVK 647
Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
DK+HP I+ +LD LI MR +G ++
Sbjct: 648 DKSHPRKKQIHSLLDILIAEMRPEQDHTEIGSLS 681
|
|
| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 173/497 (34%), Positives = 285/497 (57%)
Query: 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
KQ H+ L G + + L+ L ++ +F+ Q+ +LYN LI Y +
Sbjct: 5 KQLHAHCLRTG-VDE---TKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVH 60
Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
H +E++ L++ + + + P T I S L+H + GF D
Sbjct: 61 HQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCC 120
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
+L++ Y K G +FDEM +R+V WN I+G+ GD + +FD M R+
Sbjct: 121 TTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAME---LFDSMPRK 177
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
NV +WT +I+G+ QNG+ EAL +FL M+ ++PN +++VSVLP C++L L G+++
Sbjct: 178 NVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRL 237
Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
G+A ++ +CNA I+MYSKCG +D A+R+FE+ ++ +W+S++ HGK
Sbjct: 238 EGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGK 297
Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
EA+ L+ +M+ G KPD +T VG+L AC G++ +G E++ S+ ++I P E
Sbjct: 298 HDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYG 357
Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
C++D+LGR G+L A D IKTMP++P +WG L+ A HGN E+ ++A ++L +LEP
Sbjct: 358 CMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPT 417
Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW-ISIHGKTHCFSVADKAHP 518
NP N V +SN+YA++ +WD V +R +MK + K+ G S+ + + H F+V DK+HP
Sbjct: 418 NPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHP 477
Query: 519 CSVSIYEMLDDLILIMR 535
S IY++L+++ M+
Sbjct: 478 RSYEIYQVLEEIFRRMK 494
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 121/325 (37%), Positives = 202/325 (62%)
Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
V RR+FD+M + + W A+I+GY QNG + L L+ +M+ + P+ +LVSVL
Sbjct: 207 VEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMK-SSGVCPDPFTLVSVLS 265
Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
+C+ L G ++ +V + NA I MY++CG+L AR VF+ K +
Sbjct: 266 SCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPV-KSLV 324
Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
+W++++ YG+HG G ++L++ M+ G +PD V VLSAC SGL ++GLE++ ++
Sbjct: 325 SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 384
Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
Y+++P E +C+VD+LGRAG+LD A++FI++MPVEP ++WGAL+ A +H N +M
Sbjct: 385 KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDM 444
Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
+LA+ +I+ EP N YV +SN+Y+ S+ + + +R MM++R +K PG S++ G
Sbjct: 445 AELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG 504
Query: 506 KTHCFSVADKAHPCSVSIYEMLDDL 530
+ H F D++H + ++ MLD+L
Sbjct: 505 RVHLFLAGDRSHEQTEEVHRMLDEL 529
|
|
| TAIR|locus:2083631 AT3G15130 "AT3G15130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 118/322 (36%), Positives = 194/322 (60%)
Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ-LKDRIEPNKVSLVSVLPTC 267
+R+ FDQ+K + + +W+++I GY Q G+ EA+ LF +Q L +I+ +L S++
Sbjct: 266 ARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQID--SFALSSIIGVF 323
Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
+ L GKQ+ A++ + S+ N+++DMY KCG +D A + F + KD I+W
Sbjct: 324 ADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQL-KDVISW 382
Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
+ +++GYG HG G ++V ++ +M+ +PD + + VLSAC SG+I EG E+++ ++
Sbjct: 383 TVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 442
Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
T+ IKP E ACVVD+LGRAG+L A I TMP++P+ IW L+S +HG+ E+
Sbjct: 443 THGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGK 502
Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
K L++++ +NP+NYV +SNLY + W+ R + +GLKK G SW+ I +
Sbjct: 503 EVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 562
Query: 508 HCFSVADKAHPCSVSIYEMLDD 529
H F + +HP + I E L +
Sbjct: 563 HFFRSGEDSHPLTPVIQETLKE 584
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
Identities = 126/330 (38%), Positives = 209/330 (63%)
Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
SR VFD+MK +++ W +M GYVQ + +EAL LFLE+QL R P++ + +++
Sbjct: 508 SRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLS-RERPDEFTFANMVTAAG 566
Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
+L + G++ H +++ L + + NAL+DMY+KCGS + A + F DS+ ++D + W+
Sbjct: 567 NLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAF-DSAASRDVVCWN 625
Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
S++S Y HG+G +A+ + KM+ G +P+ IT VGVLSAC +GL+ +GL+ + ++
Sbjct: 626 SVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR- 684
Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
+ I+P TE C+V +LGRAG+L++A + I+ MP +P+ +W +L+S GN E+ +
Sbjct: 685 FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEH 744
Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
A + I +P++ ++ LSN+YAS W ++R MK G+ K PG SWI I+ + H
Sbjct: 745 AAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVH 804
Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
F DK+H + IYE+LDDL++ +RG +
Sbjct: 805 IFLSKDKSHCKANQIYEVLDDLLVQIRGVS 834
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 177/525 (33%), Positives = 299/525 (56%)
Query: 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVST--KLITAYALCGQPTQSQLVFNSIQH 83
F+Q S H ++ + ++ + +S+ V T L+ AYA G + + + ++
Sbjct: 152 FVQGSMFHMYMRCGRMGDARKV-FDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210
Query: 84 K----DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
++ +N +++G+ ++ H EA+ +F +++ PD T++++ G+ + LN+
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270
Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
G LIHG IK G + D + ++++ MY K G ++LF++ G N I+G +
Sbjct: 271 GRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSR 330
Query: 200 SGDFSLVVRSRRVF-DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
+G + +F +Q NV +WT++I G QNG EAL LF EMQ+ ++PN V
Sbjct: 331 NGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG-VKPNHV 389
Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
++ S+LP C ++ L G+ HGFA+R L +V + +ALIDMY+KCG ++ ++ VF
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMM 449
Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
K+ + W+S+++G+ +HGK E + ++ ++ KPD I+ +LSACG+ GL +EG
Sbjct: 450 P-TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
+ + + Y IKP E +C+V++LGRAG+L A D IK MP EP +WGAL+++
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568
Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
+ N ++ ++A + L LEPENP YV LSN+YA+ W V +R M+ GLKK+PGC
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628
Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
SWI + + + DK+HP I E +D++ MR + P+L
Sbjct: 629 SWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNL 673
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 1.3e-83, Sum P(2) = 1.3e-83
Identities = 120/317 (37%), Positives = 191/317 (60%)
Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
+F + R+NV +WT++I G N EAL+ FL Q+K ++PN ++L + L C+ +
Sbjct: 455 IFHNIPRKNVISWTSIIAGLRLNNRCFEALI-FLR-QMKMTLQPNAITLTAALAACARIG 512
Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
L GK+IH +R + D L NAL+DMY +CG ++ A F +S KD +W+ ++
Sbjct: 513 ALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF--NSQKKDVTSWNILL 570
Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
+GY G+G V L+++MV +PD IT + +L C +S ++ +GL +Y S + Y +
Sbjct: 571 TGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGL-MYFSKMEDYGV 629
Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
P + ACVVD+LGRAG+L A FI+ MPV P P++WGAL++A +H ++ +L+ +
Sbjct: 630 TPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQ 689
Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
+ +L+ ++ Y+ L NLYA +W VA++R MMK+ GL GCSW+ + GK H F
Sbjct: 690 HIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFL 749
Query: 512 VADKAHPCSVSIYEMLD 528
DK HP + I +L+
Sbjct: 750 SDDKYHPQTKEINTVLE 766
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
Identities = 120/337 (35%), Positives = 205/337 (60%)
Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
V + +VF + +++ AW+AM+ GY Q G+ + A+ +F E+ K I+PN+ + S+L
Sbjct: 444 VEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT-KGGIKPNEFTFSSILN 502
Query: 266 TCSSLIGLSG-GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
C++ G GKQ HGFAI+ L+ + + +AL+ MY+K G+++ A VF+ KD
Sbjct: 503 VCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDL 561
Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
++W+S++SGY HG+ +A+ ++ +M K D +T +GV +AC +GL+ EG + ++
Sbjct: 562 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDI 621
Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
++ +I PT E +C+VD+ RAGQL++A+ I+ MP +IW +++A +H +E
Sbjct: 622 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTE 681
Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
+ LA + +I ++PE+ + YV LSN+YA S W A++R +M +R +KK PG SWI +
Sbjct: 682 LGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVK 741
Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
KT+ F D++HP IY L+DL ++ P
Sbjct: 742 NKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 778
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 1.6e-83, Sum P(2) = 1.6e-83
Identities = 118/344 (34%), Positives = 196/344 (56%)
Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
N I +A G+ V S ++F M + W +I+ V+ GD L + +M+ K
Sbjct: 447 NALIDMYAKCGE---VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMR-K 502
Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
+ P+ + + LP C+SL GK+IH +R ++ + NALI+MYSKCG L+
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLEN 562
Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
+ RVFE S +D +TW+ ++ YG++G+G +A+ + M G PD + + ++ AC
Sbjct: 563 SSRVFERMS-RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621
Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
SGL++EGL + + Y+I P E ACVVD+L R+ ++ +A +FI+ MP++P SIW
Sbjct: 622 HSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIW 681
Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
+++ A G+ E + + +I+L P++P + SN YA+ R+WD V+ +R +KD+
Sbjct: 682 ASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDK 741
Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
+ K+PG SWI + H FS D + P S +IY+ L+ L +M
Sbjct: 742 HITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLM 785
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 547 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-113 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-93 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-62 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-57 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-34 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 356 bits (915), Expect = e-113
Identities = 171/492 (34%), Positives = 279/492 (56%), Gaps = 38/492 (7%)
Query: 37 KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
+L ++ H ++ G + V LI Y G +++ VF+ ++ KD + ++I+GY
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 97 VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
KN ++ALE ++ M NVSPD+ T+A++ + DL+VG+ +H L+ + G + V
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
++AN+L+ MY KC + L +F +P
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIP--------------------------------- 451
Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
++V +WT++I G N EAL+ F +M L ++PN V+L++ L C+ + L G
Sbjct: 452 -EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCG 508
Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
K+IH +R + D L NAL+D+Y +CG ++ A F +S KD ++W+ +++GY
Sbjct: 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF--NSHEKDVVSWNILLTGYVA 566
Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
HGKG AV L+N+MV G PD +T + +L AC RSG++ +GLE ++S+ Y I P +
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
ACVVD+LGRAG+L A +FI MP+ P P++WGAL++A +H + E+ +LA + + +L
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686
Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
+P + Y+ L NLYA + +WD VA +R M++ GL PGCSW+ + GK H F D++
Sbjct: 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746
Query: 517 HPCSVSIYEMLD 528
HP I +L+
Sbjct: 747 HPQIKEINTVLE 758
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 5e-93
Identities = 151/522 (28%), Positives = 259/522 (49%), Gaps = 36/522 (6%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
++T ++ +S++ K + + S G + ++ +++ + CG ++ +F+
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 80 SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
+ +++ + ++I G V + EA LF M+ + T + + S +
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
G +H +K G V D ++ +L+ MY KCG +
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED------------------------- 277
Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
+R VFD M + AW +M+ GY +G +EAL L+ EM+ + ++ +
Sbjct: 278 ---------ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFT 327
Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
++ S L L KQ H IR D+ AL+D+YSK G ++ AR VF+
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
K+ I+W+++++GYG HG+G +AV ++ +M+ G P+ +T + VLSAC SGL +G
Sbjct: 388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446
Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
EI+ S+ +RIKP AC++++LGR G LD A I+ P +P+ ++W AL++A +
Sbjct: 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI 506
Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
H N E+ LA + L + PE +NYV L NLY SS R A++ +K +GL P C+
Sbjct: 507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566
Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
WI + + H F D+ HP S IY+ LD+L+ +
Sbjct: 567 WIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 9e-62
Identities = 136/440 (30%), Positives = 224/440 (50%), Gaps = 41/440 (9%)
Query: 36 LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
L ++ H+ ++ G + V LIT Y CG ++LVF+ + +D +N++I+G
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 96 YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
Y +N E LELF M +V PD T+ ++ + D +G +HG +K GF VD
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
V + NSL+ MY+ ++GSW + +VF +
Sbjct: 323 VSVCNSLIQMYL------------------SLGSWG----------------EAEKVFSR 348
Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
M+ ++ +WTAMI+GY +NG D+AL + M+ D + P+++++ SVL C+ L L
Sbjct: 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDV 407
Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
G ++H A RK L V + NALI+MYSKC +D A VF + KD I+W+SI++G
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLR 466
Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
L+ + EA++ + +M+ L KP+ +T++ LSAC R G + G EI+ V+ T I
Sbjct: 467 LNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDG 524
Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
+ ++D+ R G+++ A + + E W L++ V HG M + +++
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582
Query: 456 LEPENPSNYVSLSNLYASSR 475
NP +S L A SR
Sbjct: 583 SG-VNPDEVTFISLLCACSR 601
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (522), Expect = 3e-57
Identities = 108/346 (31%), Positives = 177/346 (51%), Gaps = 37/346 (10%)
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
VF + +D++ +N L+ GY K +EAL L+ M ++ V PD +T + + G I D
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
L G +H ++ GF +DV + N+L++MYVKCG
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGD------------------------- 237
Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
VV +R VFD+M RR+ +W AMI+GY +NG+ E L LF M + ++P+
Sbjct: 238 ---------VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPD 287
Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
+++ SV+ C L G+++HG+ ++ DVS+CN+LI MY GS A +VF
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
KDA++W++++SGY +G +A+ Y M PD ITI VLSAC G ++
Sbjct: 348 RMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
G++++ I + +++M + +D+AL+ +P
Sbjct: 407 VGVKLHELAERKGLISYVV-VANALIEMYSKCKCIDKALEVFHNIP 451
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-34
Identities = 94/352 (26%), Positives = 158/352 (44%), Gaps = 38/352 (10%)
Query: 90 NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
NS + + +AL+L +M V D+ + +L + + G + ++
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
+ V L N+++SM+V+ G+ +F +MP+R++ SWNV
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNV----------------- 157
Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
++ GY + G DEAL L+ M L + P+ + VL TC
Sbjct: 158 -----------------LVGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGG 199
Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
+ L+ G+++H +R DV + NALI MY KCG + AR VF D +D I+W++
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF-DRMPRRDCISWNA 258
Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
++SGY +G+ E + L+ M L PD++TI V+SAC G G E++ V+ T
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT- 317
Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
+C ++ M G A M + + S W A++S +G
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-WTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-34
Identities = 99/356 (27%), Positives = 149/356 (41%), Gaps = 69/356 (19%)
Query: 102 HNEALELFSNM-----YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
H EALELF + + S D + L K + ++ GF D
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIAL----KSIRCVKAVYWHVESSGFEPDQ 158
Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
+ N ++ M+VKCG + LFDEMP+RN+ SW
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGT------------------------ 194
Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
+I G V G+ EA LF EM +D + + V +L + L G
Sbjct: 195 ----------IIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
+Q+H ++ + D + ALIDMYSKCG ++ AR VF D K + W+S+++GY L
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF-DGMPEKTTVAWNSMLAGYAL 302
Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR-----------SGLINEGLEIYNSV 385
HG EA+ LY +M G D T ++ R +GLI G + + V
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIV 361
Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
NT +VD+ + G+++ A + MP + S W AL++ HG
Sbjct: 362 ANT-----------ALVDLYSKWGRMEDARNVFDRMPRKNLIS-WNALIAGYGNHG 405
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 76/321 (23%), Positives = 129/321 (40%), Gaps = 46/321 (14%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T+ L A L + + H G IS V+ LI Y+ C ++ VF++I
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
KDV + S+I G N+ EAL F M + + P+ TL I L G
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
IH ++ G D L N+L+ +YV+CG+ + N F+ +++V SWN+
Sbjct: 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNI--------- 559
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
++ GYV +G A+ LF M ++ + P++V+ +
Sbjct: 560 -------------------------LLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFI 593
Query: 262 SVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
S+L CS ++ G ++I L H ++D+ + G L A
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC----VVDLLGRAGKLTEAYNFIN 649
Query: 317 DSSFNKDAITWSSIVSGYGLH 337
D W ++++ +H
Sbjct: 650 KMPITPDPAVWGALLNACRIH 670
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 5/229 (2%)
Query: 208 RSRRVFDQMKRRNVYAWT-AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
RSR + + + + + +G L++AL L MQ + R+ ++ + V++
Sbjct: 37 RSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRL 95
Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
C + G ++ A+ + V L NA++ M+ + G L A VF +D +
Sbjct: 96 CEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-ERDLFS 154
Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
W+ +V GY G EA+ LY++M+ G +PD+ T VL CG + G E++ V+
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
+ + ++ ++ M + G + A MP S W A++S
Sbjct: 215 R-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS-WNAMIS 261
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 6e-14
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 3/234 (1%)
Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
R+ D R++ + + I V G EAL LF ++ + +++ C +L
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL 136
Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
+ K ++ D + N ++ M+ KCG L ARR+F D ++ +W +I
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF-DEMPERNLASWGTI 195
Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
+ G G EA L+ +M GS + T V +L A G G +++ V+ T
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
+ T CA ++DM + G ++ A MP E + W ++++ +HG SE
Sbjct: 256 VGDTFVSCA-LIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSE 307
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 1 MILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
M+L+ N+ L+ + L A +L K+ H+ +L G + F+
Sbjct: 481 MLLTLKPNSVTLIAA-----------LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 61 LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSP 119
L+ Y CG+ + FNS KDV +N L+ GYV HG A+ELF+ M S V+P
Sbjct: 530 LLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVA-HGKGSMAVELFNRMVESGVNP 587
Query: 120 DDFTLATISKLSGEIKDLNVG---MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
D+ T IS L + V H + K ++ ++ + + GK +E
Sbjct: 588 DEVTF--ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645
Query: 177 NLFDEMP 183
N ++MP
Sbjct: 646 NFINKMP 652
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-08
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 84 KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
DV YN+LI+GY K EAL+LF+ M + P+ +T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
+V + +I+GY + G ++EAL LF EM+ K I+PN T S LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVY-------TYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 67/326 (20%), Positives = 137/326 (42%), Gaps = 41/326 (12%)
Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP----QRNVGSWNVRISGHASSGDFSLV 206
G D L +L+S K GK +F EM + NV ++ I G A +G V
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ---V 523
Query: 207 VRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLV 261
++ + M+ +NV + A+I+ Q+G +D A + EM+ + I+P+ +++
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583
Query: 262 SVLPTCSSLIGLSGG---------KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
+++ C+ + G + IH + I+ + ++ S+ G D A
Sbjct: 584 ALMKACA-----NAGQVDRAKEVYQMIHEYNIKGTP----EVYTIAVNSCSQKGDWDFAL 634
Query: 313 RVFEDSSFNKDAIT-----WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
+++D K + +S++V G G +A + G K ++ ++
Sbjct: 635 SIYDD--MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA---LDFIKTMPVE 424
AC + + LE+Y I + +++PT ++ L QL +A L +K + +
Sbjct: 693 ACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 425 PSPSIWGALVSASVMHGNSEMQDLAY 450
P+ + L+ AS ++++
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
D +T+++++ GY GK EA+ L+N+M G KP++ T ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQ 248
+ ++I+GY + G L+EAL LF EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 25/239 (10%)
Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-E 287
N +++G + + + L +M+ + ++ +K+ C F K
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK-----KQRAVKEAFRFAKLI 432
Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVF---EDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
N +S N L+ + + +D A RV +++ D +++++S GK
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-----TTEICA 399
++++MV G + ++ T ++ C R+G + + Y ++ + +KP I A
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY-GIMRSKNVKPDRVVFNALISA 551
Query: 400 CVVDMLGRAGQLDRALDFIKTM-----PVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
C G++G +DRA D + M P++P GAL+ A G + Y+ +
Sbjct: 552 C-----GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 65/286 (22%), Positives = 112/286 (39%), Gaps = 59/286 (20%)
Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA----WTAMINGYVQNGDL 237
+ + ++N+ +S ASS D + RV ++ + A +T +I+ ++G +
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDID---GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI-GLSGGKQI------HGFAIRKELNH 290
D +F EM +E N + T +LI G + Q+ +G K +
Sbjct: 489 DAMFEVFHEMVNAG-VEAN-------VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540
Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
D + NALI + G++D A V + I
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI------------------------- 575
Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
PD IT+ ++ AC +G ++ E+Y I+ Y IK T E+ V+ + G
Sbjct: 576 -----DPDHITVGALMKACANAGQVDRAKEVYQM-IHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 411 LDRALDFIKTMP---VEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
D AL M V+P + ALV + G++ D A++ L
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVA---GHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
+ +I+G + G ++EAL LF EM+ + IEP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK-ERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 6e-05
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
+V + +I+G + G +DEA+ L EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGY 231
+V ++N I G+ G ++ +F++MK+R NVY ++ +I+G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALK---LFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQR----NVGSWNVRISGHA 198
DV+ N+L+ Y K GK E L LF+EM +R NV ++++ I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 77/364 (21%), Positives = 137/364 (37%), Gaps = 59/364 (16%)
Query: 59 TKLITAYALCGQPTQSQLVF----NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
T LI+ A G+ VF N+ +V+ + +LI+G + +A + M
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 115 SNVSPDDF---TLATISKLSGEIK---DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
NV PD L + SG + D+ M I D I +LM
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID----PDHITVGALMKACAN 591
Query: 169 CGKFSECLNLFDEMPQRNV-GS---WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA- 223
G+ ++ + + N+ G+ + + ++ + GD+ + ++D MK++ V
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF---ALSIYDDMKKKGVKPD 648
Query: 224 ---WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
++A+++ GDLD+A + + + K I+ VS S++ CS+ +++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
+L VS NALI + L A V +
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE----------------------- 744
Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
M LG P+ IT +L A R + GL++ S IKP +C C
Sbjct: 745 ---------MKRLGLCPNTITYSILLVASERKDDADVGLDLL-SQAKEDGIKPNLVMCRC 794
Query: 401 VVDM 404
+ +
Sbjct: 795 ITGL 798
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNV 187
NSL+S Y K GK E L LF EM ++ V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
+T+++++ G G+ EA+ L+ +M G +PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 85 DVYLYNSLINGYVKNHGHNEALELFSNM 112
DV YN+LI+G + +EA+EL M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
+T++S++SGY GK EA+ L+ +M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.11 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.02 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.91 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.89 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.89 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.77 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.24 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.01 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.74 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.44 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.36 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.34 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.11 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.09 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.98 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.92 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.86 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.83 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.63 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.6 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.34 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.88 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.73 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.71 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.51 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.46 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.38 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.38 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.23 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.2 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.09 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.08 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.07 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.88 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.75 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.58 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.5 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.13 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.91 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.09 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.97 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.9 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.66 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.33 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.25 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.22 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.17 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.96 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.3 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.24 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.04 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.33 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.2 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.52 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.29 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.18 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.98 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.92 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 88.48 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.41 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.16 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.96 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.68 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.27 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.04 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.93 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.81 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.76 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.69 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.45 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.21 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.18 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.09 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.04 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.77 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.7 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.52 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.12 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.02 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.95 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.45 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.36 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.11 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.96 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.28 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.08 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.04 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.77 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 81.57 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 81.51 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 81.41 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.33 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.6 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-80 Score=652.28 Aligned_cols=537 Identities=34% Similarity=0.634 Sum_probs=507.2
Q ss_pred cccCCcccccccccCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhH--------------------------
Q 044812 4 SSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFV-------------------------- 57 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------------------------- 57 (547)
+.|.++|..++++ +..+|+.++..+.+.|++++|.++|++|.+.|+.||..+
T Consensus 138 ~~A~~~f~~m~~~--d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 138 VHAWYVFGKMPER--DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHHHhcCCCC--CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 3466667766653 456788888888888888888888888877777666554
Q ss_pred ---------HHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHH
Q 044812 58 ---------STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128 (547)
Q Consensus 58 ---------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 128 (547)
+|.|+.+|++.|++++|.++|+.|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 57778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhH--
Q 044812 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV-- 206 (547)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-- 206 (547)
.+|++.|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred -----------------------------------------------------------------HHHHHHHhhcCCCCh
Q 044812 207 -----------------------------------------------------------------VRSRRVFDQMKRRNV 221 (547)
Q Consensus 207 -----------------------------------------------------------------~~a~~~~~~~~~~~~ 221 (547)
++|.++|++|.++|.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 567888888888899
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (547)
.+|+.+|.+|++.|+.++|+.+|++| .. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m-~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQM-LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHH-Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 99999999999999999999999999 44 59999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044812 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 381 (547)
|++.|++++|.++|+++ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++
T Consensus 534 y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 99999999999999998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++.+.+++.+++|+++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 99998777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcC
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 541 (547)
..|..|++.|.+.|+|++|.++.+.|++.|+.++|+++|+.+.+++|.|+.++++||+.+++++.|+++..+|++.||.|
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 044812 542 HLGKM 546 (547)
Q Consensus 542 ~~~~~ 546 (547)
|++++
T Consensus 772 ~~~~~ 776 (857)
T PLN03077 772 SESSS 776 (857)
T ss_pred Ccchh
Confidence 98753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-78 Score=620.25 Aligned_cols=520 Identities=27% Similarity=0.411 Sum_probs=488.9
Q ss_pred CCcchHHHHHHHHHhccCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCchhHHHHhccCC----CCCcchHHHH
Q 044812 18 YTSATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQ----HKDVYLYNSL 92 (547)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 92 (547)
.+..+....+..+...|++.+|.++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|. .||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344567888888888999999999999988765 67899999999999999999999999888885 3788899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 93 INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 93 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
+.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999864 788899999999999999999999999999889899999999999999999999
Q ss_pred HHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHch
Q 044812 173 SECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248 (547)
Q Consensus 173 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 248 (547)
+.+.+++..+.+ +|..+|+.++.+|++.|++++ |.++|+.|.++|..+||.||.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~---A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M- 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED---ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM- 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH---HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-
Confidence 888888776653 677889999999999999888 888899999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHH
Q 044812 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328 (547)
Q Consensus 249 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 328 (547)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|++.|++++|.++|++|. .||..+||
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n 395 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWN 395 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (547)
+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 409 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|++++|.+++++|+..|+..+|+.|+.+|...|+++.|..+++++.+.+|.+..+|..|+++|.+.|++++|.++++.|+
T Consensus 476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCCCC
Q 044812 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546 (547)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 546 (547)
+.|+.+.|+++|+.+.+.+|.|++++.+||+.+++++.+.++..+|++.||.||+.++
T Consensus 556 ~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred HcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=561.88 Aligned_cols=504 Identities=28% Similarity=0.467 Sum_probs=458.1
Q ss_pred cchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhc
Q 044812 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99 (547)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 99 (547)
..++..++..+...+.+..+.+++..+.+.|..++...+|.++..|++.|+++.|.++|+.|++||..+||.+|.+|++.
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC
Confidence 33445555555555555566666666666666666677788899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 044812 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 179 (547)
|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHcCCCchhH-----------------------------------------------------
Q 044812 180 DEMPQRNVGSWNVRISGHASSGDFSLV----------------------------------------------------- 206 (547)
Q Consensus 180 ~~~~~~~~~~~~~li~~~~~~g~~~~a----------------------------------------------------- 206 (547)
++|.++|..+||.+|.+|++.|+.++|
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 999999999999999999888887776
Q ss_pred --------------HHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC
Q 044812 207 --------------VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272 (547)
Q Consensus 207 --------------~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 272 (547)
.+|.++|++|..||..+|+.+|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccch
Confidence 55888999999999999999999999999999999999999 899999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
++.+.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|..+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044812 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432 (547)
Q Consensus 353 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 432 (547)
+++||..||+.++.+|++.|.++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+.
T Consensus 484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~ 559 (857)
T PLN03077 484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNI 559 (857)
T ss_pred -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHH
Confidence 59999999999999999999999999999999877 99999999999999999999999999999998 799999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCccCCccceEeeCCEEEEE
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLE-PENPSNYVSLSNLYASSRRWDAVAELRTMMK-DRGLKKSPGCSWISIHGKTHCF 510 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~ 510 (547)
++.+|++.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+...+...+
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv------- 632 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV------- 632 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH-------
Confidence 9999999999999999999999876 5578899999999999999999999999998 789998876544433
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCC
Q 044812 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544 (547)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 544 (547)
..+...++.+++.+.+ ++| +.+||..
T Consensus 633 -~~l~r~G~~~eA~~~~----~~m---~~~pd~~ 658 (857)
T PLN03077 633 -DLLGRAGKLTEAYNFI----NKM---PITPDPA 658 (857)
T ss_pred -HHHHhCCCHHHHHHHH----HHC---CCCCCHH
Confidence 3444567777777777 444 4667754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=535.36 Aligned_cols=513 Identities=13% Similarity=0.139 Sum_probs=471.5
Q ss_pred ccccCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHH
Q 044812 14 TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92 (547)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 92 (547)
.....+.+.+..+...+.++|++.+|.++|++|.+.|+ +++...++.++..|.+.|.+++|.++|+.|..|+..+|+.+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34444566688888888899999999999999999996 67888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 93 INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 93 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC------CCChhhHHHHHHHHHHCCCHHHHHH
Q 044812 173 SECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK------RRNVYAWTAMINGYVQNGDLDEALV 242 (547)
Q Consensus 173 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~ 242 (547)
++|.++|++|.+ ||..+|+.+|.+|++.|++++ |.++|.+|. .||..+|+++|.+|++.|++++|.+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de---A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR---AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999964 789999999999999999998 778887773 5899999999999999999999999
Q ss_pred HHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---C
Q 044812 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---S 319 (547)
Q Consensus 243 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 319 (547)
+|++| .+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++| +
T Consensus 601 lf~~M-~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 601 VYQMI-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHH-HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999874 6
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 320 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~ 758 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYS 758 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred HHHHHhHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTM---PVEPSPSIWGALVSASVM----H-------------------GNSEMQDLAYKSL 453 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~ 453 (547)
.++.+|++.|++++|.+++++| ++.||..+|+.++..|.+ . +..+.|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999998 688999999999876432 1 2246799999999
Q ss_pred HhhC-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHH
Q 044812 454 IQLE-PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532 (547)
Q Consensus 454 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (547)
.+.+ .++..+|..++.++...+..+.+..+++.|...+..++...+..++.+ .... ..++...+ +
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g--------~~~~--~~~A~~l~----~ 904 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG--------FGEY--DPRAFSLL----E 904 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh--------hccC--hHHHHHHH----H
Confidence 9987 668889999999998999999999999999888887777777666643 2111 24677777 8
Q ss_pred HHHHcCCcCCCCC
Q 044812 533 IMRGAAASPHLGK 545 (547)
Q Consensus 533 ~~~~~~~~p~~~~ 545 (547)
+|...|+.|+..+
T Consensus 905 em~~~Gi~p~~~~ 917 (1060)
T PLN03218 905 EAASLGVVPSVSF 917 (1060)
T ss_pred HHHHcCCCCCccc
Confidence 9999999999753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=522.27 Aligned_cols=484 Identities=17% Similarity=0.217 Sum_probs=445.8
Q ss_pred cccCCcccccccccCCcch---HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhcc
Q 044812 4 SSARNTFALVTSRNYTSAT---VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 80 (547)
++|.++|+.+..++..+++ +..++..+...|.+.+|..+++.|.. ||..+|+.++.+|++.|+++.|.++|+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 5688889999887764443 56778888889999999999998875 9999999999999999999999999999
Q ss_pred CCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCch
Q 044812 81 IQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156 (547)
Q Consensus 81 ~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 156 (547)
|.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 964 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCC------CCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC----CCChhhHHH
Q 044812 157 ILANSLMSMYVKCGKFSECLNLFDEMP------QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTA 226 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~----~~~~~~~~~ 226 (547)
.+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++ |.++|+.|. .|+..+|+.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde---A~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR---AKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHcCCCCChHHHHH
Confidence 999999999999999999999999995 4788999999999999999999 777777775 467899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044812 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306 (547)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (547)
+|.+|++.|++++|.++|++| ...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|
T Consensus 620 LI~ay~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 307 SLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 307 ~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
++++|.++|++| ++.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999875 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhHh----c-------------------CCHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 044812 384 SVINTYRIKPTTEICACVVDMLGR----A-------------------GQLDRALDFIKTM---PVEPSPSIWGALVSAS 437 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~ 437 (547)
+|.+. |+.||..+|+.++..|.+ + +..++|..+|++| ++.||..||+.++.++
T Consensus 779 ~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 779 QAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 99877 999999999999876432 1 2346799999999 7899999999999888
Q ss_pred HHcCCHHHHHHHHHHHHhh-CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCcc
Q 044812 438 VMHGNSEMQDLAYKSLIQL-EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
+..+....+..+++.+... .+++..+|+.|+.++.+. .++|..++++|...|+.|+...
T Consensus 858 ~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred cccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccc
Confidence 8889999998888887654 366788999999998432 3689999999999999988753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=462.70 Aligned_cols=464 Identities=13% Similarity=0.166 Sum_probs=418.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH
Q 044812 50 GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124 (547)
Q Consensus 50 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 124 (547)
...++..+|+.++..|.+.|++++|+++|+.|.. |+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 3456778999999999999999999999999853 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----CChhhHHHHHHHHHcC
Q 044812 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ----RNVGSWNVRISGHASS 200 (547)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 200 (547)
+.++..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ ++..+|+.++.++++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 999999999999999999999995 58999999999999999999999999999964 7888999999999999
Q ss_pred CCchhHHHHHHHHhhc----CCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhH
Q 044812 201 GDFSLVVRSRRVFDQM----KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276 (547)
Q Consensus 201 g~~~~a~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 276 (547)
|..+. +.+++..+ ..+|..+|+.|+.+|++.|++++|.++|++| ..+|..+|+.++.+|++.|+.++|
T Consensus 238 ~~~~~---~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-----~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 238 GSARA---GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred CcHHH---HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-----CCCChhHHHHHHHHHHhCCCHHHH
Confidence 99888 44444333 3579999999999999999999999999999 357999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044812 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353 (547)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 353 (547)
..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++.. .++.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 99999999999999999999999999999999999999976 4678999999999999999999999999999995
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCCHHH
Q 044812 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEPSPSI 429 (547)
Q Consensus 354 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~ 429 (547)
.||..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..+|+.++.+|.+.|.+++|.++|+.| ++.|+..+
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 479999999999999999999999999999877 99999999999999999999999999999998 57899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEE
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 509 (547)
|+.++.+|++.|++++|.++++++. ..++..+|..|+.+|...|+++.|..+++++.+. .|+....+..+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L------ 534 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVL------ 534 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHH------
Confidence 9999999999999999999988752 2346778999999999999999999999998644 34322222222
Q ss_pred EeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCCC
Q 044812 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGK 545 (547)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 545 (547)
+..+...++.+++.+.+ +.|++.|+++.+++
T Consensus 535 -~~~y~~~G~~~~A~~v~----~~m~~~g~~k~~g~ 565 (697)
T PLN03081 535 -LNLYNSSGRQAEAAKVV----ETLKRKGLSMHPAC 565 (697)
T ss_pred -HHHHHhCCCHHHHHHHH----HHHHHcCCccCCCe
Confidence 34566778888888888 89999999866653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=278.85 Aligned_cols=476 Identities=12% Similarity=0.085 Sum_probs=229.7
Q ss_pred ccCCcccccccccCCcc-hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC
Q 044812 5 SARNTFALVTSRNYTSA-TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83 (547)
Q Consensus 5 ~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 83 (547)
+|.+.|+.+.+.++..+ .+..+...+...|++.+|...++.+.+... ........++..+.+.|++++|.++++.+..
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555544443322 245555555666666666666666655531 1233334445555555566666555555532
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH
Q 044812 84 ---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160 (547)
Q Consensus 84 ---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 160 (547)
++...|+.+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|...++.+.+.+ +.+..++.
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 2344555555555555555555555555554321 123344445555555555555555555555443 23444555
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCH
Q 044812 161 SLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 237 (547)
.+...+.+.|+.++|...++++.+ .+...+..++..+...|+++++....+......+.+...|..++.++...|++
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 555555555555555555555432 12234444555555555555522222222222233444555555555555555
Q ss_pred HHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
++|+..|+.+ .+. .+.+...+..+..++...|++++|...++.+.+.. +.+...+..++..+...|++++|.++++.
T Consensus 618 ~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKL-LAL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHH-HHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554 221 12233344445555555555555555555554433 23344445555555555555555555544
Q ss_pred CC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch
Q 044812 318 SS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395 (547)
Q Consensus 318 ~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (547)
+. .+.+...+..+...+...|++++|...|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~ 770 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDA 770 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 21 0223334444445555555555555555555443 233344444444555555555555555554432 12244
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
..+..+...|...|++++|...|+++ .. +++..++..+...+...|+ .+|+..++++.+..|.++..+..++.++..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 44444555555555555555555444 11 1233344444444444444 445555555554444444444445555555
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 044812 474 SRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~ 491 (547)
.|++++|.++++++.+.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIA 867 (899)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 555555555555544433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-30 Score=276.53 Aligned_cols=473 Identities=11% Similarity=0.053 Sum_probs=367.0
Q ss_pred ccCCcccccccccCC-cchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC
Q 044812 5 SARNTFALVTSRNYT-SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83 (547)
Q Consensus 5 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 83 (547)
+|.+.+......++. ...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 344455555544443 3346777888888889999988888887764 44567777888888888899988888887754
Q ss_pred --C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH
Q 044812 84 --K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160 (547)
Q Consensus 84 --~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 160 (547)
| +...+..++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 2 3345666777888889999999988888764 34466788888888888899999999988888764 44566777
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhc---CCCChhhHHHHHHHHHHC
Q 044812 161 SLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQM---KRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~---~~~~~~~~~~li~~~~~~ 234 (547)
.+...+...|++++|.+.|+++.+ .+...+..+...+.+.|+.++ |...+.++ ...+...+..++..+.+.
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE---AVAWLEKAAELNPQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCccchhHHHHHHHHHHHC
Confidence 788888888999999888888754 345577788888888888888 55555444 345667778888888889
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
|++++|..+++.+ .. ..+.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 581 ~~~~~A~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 581 GQLKKALAILNEA-AD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CCHHHHHHHHHHH-HH-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998888 33 235566788888888888899999999888888765 44566778888888888999999888
Q ss_pred HhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 044812 315 FEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392 (547)
Q Consensus 315 ~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (547)
|++. .. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~ 733 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---A 733 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---C
Confidence 8763 22 3346778888888888899999999988888764 446677777888888889999999988888754 4
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 393 PTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
|+..++..++.++.+.|++++|.+.++++ ..+.+...+..+...|...|+.++|.+.|+++.+..|+++.++..++.+
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWL 813 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55577777888888889999998888876 2234566888888888888999999999999988888888888888888
Q ss_pred HHcCCCHHHHHHHHHHHHhCC
Q 044812 471 YASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+...|+ ++|.++++++.+..
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhC
Confidence 888888 78888888887643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-23 Score=222.80 Aligned_cols=521 Identities=11% Similarity=0.067 Sum_probs=323.2
Q ss_pred cccCCcccccccccCCcchH-----------------HHHHHHHHhccCchHHHHHHHHHHHhCCCCChhH-HHHHHHHH
Q 044812 4 SSARNTFALVTSRNYTSATV-----------------QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAY 65 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~ 65 (547)
++|...++++.+.+|..+.+ ...+.++...|++++|.+.++.+.+.+ +|+... ........
T Consensus 79 ~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~ 157 (1157)
T PRK11447 79 DGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVA 157 (1157)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHh
Confidence 45666677777767666553 223446778899999999999988764 444322 11222223
Q ss_pred HhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCC------------------C------
Q 044812 66 ALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNV------------------S------ 118 (547)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------------------~------ 118 (547)
...|+.++|++.++.+.+ | +...+..+...+...|++++|++.|+++.+... .
T Consensus 158 ~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 158 KLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred hCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 345899999999998865 3 455677888888889999999999988754321 0
Q ss_pred --------CCcchH---------------------HHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044812 119 --------PDDFTL---------------------ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169 (547)
Q Consensus 119 --------p~~~~~---------------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 169 (547)
|+...+ ......+...|++++|...|++.++.. +.+...+..+..++.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 111100 011334567789999999999998865 44778888899999999
Q ss_pred CChHHHHHHhccCCC--CCh---hhHHH------------HHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 044812 170 GKFSECLNLFDEMPQ--RNV---GSWNV------------RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232 (547)
Q Consensus 170 g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~ 232 (547)
|++++|+..|++..+ |+. ..|.. ....+.+.|++++|....+-.....+.+...+..+...+.
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~ 396 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM 396 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999988765 221 11221 2345678899998555555555555567778888999999
Q ss_pred HCCCHHHHHHHHHHchhcCCCCCC-hHHHHhHHHHh------------------------------------------hc
Q 044812 233 QNGDLDEALVLFLEMQLKDRIEPN-KVSLVSVLPTC------------------------------------------SS 269 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~------------------------------------------~~ 269 (547)
..|++++|++.|++. .+. .|+ ...+..+...+ ..
T Consensus 397 ~~g~~~eA~~~y~~a-L~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 397 ARKDYAAAERYYQQA-LRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HCCCHHHHHHHHHHH-HHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999988 442 233 33343333333 23
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHH
Q 044812 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLY 347 (547)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 347 (547)
.|++++|...+++..+.. +-+...+..+...|.+.|++++|...+++. ...| +...+..+...+...++.++|...+
T Consensus 474 ~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 344444444444444433 223334444444555555555555554431 1112 2222223333334444445554444
Q ss_pred HHHHHcCCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 044812 348 NKMVCLGSKPDII---------TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418 (547)
Q Consensus 348 ~~m~~~g~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 418 (547)
+.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 4432211111110 112233445556666666666551 1345566777888888999999999998
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCC
Q 044812 419 KTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 419 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
++. ...| +...+..++..+...|+.++|++.++++.+..|+++..+..++.++...|++++|.++++++....-..++
T Consensus 627 ~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 627 QRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 887 3445 46688888888999999999999999888888888888888999999999999999999988765432222
Q ss_pred ccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCC
Q 044812 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542 (547)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 542 (547)
......+.. .....+...++.+++.+.+.+. |...|..|+
T Consensus 707 ~~~~a~~~~---~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~~~ 746 (1157)
T PRK11447 707 SMESALVLR---DAARFEAQTGQPQQALETYKDA---MVASGITPT 746 (1157)
T ss_pred chhhHHHHH---HHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCC
Confidence 111110000 0011123456677777777544 444566554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-21 Score=209.14 Aligned_cols=490 Identities=14% Similarity=0.114 Sum_probs=314.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchH-----------
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLY----------- 89 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~----------- 89 (547)
+..-+.+....++.+.|.+.++.+.... +.++..+..++..+.+.|+.++|.+.++++.+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 3444455666677777877777776664 44677777777777788888888887777754 332211
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc-hHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 044812 90 ------NSLINGYVKNHGHNEALELFSNMYYSNVSPDDF-TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162 (547)
Q Consensus 90 ------~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 162 (547)
..+...+.+.|++++|++.|+.+.+.+ +|+.. ............++.++|...++.+.+.. +.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 222335667788888888888777543 22221 11111222234577778888888777764 4455666777
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCh------hh-----------------H-----------------------------
Q 044812 163 MSMYVKCGKFSECLNLFDEMPQRNV------GS-----------------W----------------------------- 190 (547)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~------~~-----------------~----------------------------- 190 (547)
...+...|+.++|+..++++.+... .. +
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 7777777887777777776532100 00 0
Q ss_pred -----HHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC-CCCChHHH----
Q 044812 191 -----NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSL---- 260 (547)
Q Consensus 191 -----~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~p~~~~~---- 260 (547)
......+...|++++|....+-.-...+.+...+..+..++.+.|++++|+..|++. .+.. -.++...+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A-l~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKA-LALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCccchhHHHHHH
Confidence 011234556677777443333333334457778888888888888888888888887 3321 11111111
Q ss_pred --------HhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCC-hhhHH--
Q 044812 261 --------VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKD-AITWS-- 328 (547)
Q Consensus 261 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~-- 328 (547)
......+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|++. ...|+ ...+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 122345667788888888888888765 445566777788888888888888888752 22232 22221
Q ss_pred ----------------------------------------HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044812 329 ----------------------------------------SIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLS 367 (547)
Q Consensus 329 ----------------------------------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 367 (547)
.+...+...|++++|...|++..+. .| +...+..+..
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 2233455678888999999888875 44 4566777888
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHH--------------------------------------------HHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICAC--------------------------------------------VVD 403 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------l~~ 403 (547)
.+...|++++|...++++.+.. +.+...+.. +..
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 8889999999999999887542 112322222 233
Q ss_pred HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+...|+.++|..+++.-+ ++...+..+...+.+.|++++|+..|+++++.+|.++..+..++.+|...|++++|.+.
T Consensus 582 ~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666666666332 34456777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHH
Q 044812 484 RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532 (547)
Q Consensus 484 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (547)
++...+.. |+....+..+ .......++.+++.+.++++..
T Consensus 660 l~~ll~~~--p~~~~~~~~l-------a~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 660 LAKLPATA--NDSLNTQRRV-------ALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHhccC--CCChHHHHHH-------HHHHHhCCCHHHHHHHHHHHhh
Confidence 99876543 2221111100 1112235567777777755544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=187.96 Aligned_cols=441 Identities=15% Similarity=0.144 Sum_probs=347.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhc
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKN 99 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~ 99 (547)
...++.-+.+.|++.+|++-...+-+.+ +.+....-.+-..+....+.+....--....+ .-..+|+.+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 5667777778899999987766555554 33334444444456666666655443322222 2456788888888889
Q ss_pred CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHH
Q 044812 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL-ANSLMSMYVKCGKFSECLNL 178 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~ 178 (547)
|++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+...|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998875322 5677888888999999999999998888775 455443 34455556668888888888
Q ss_pred hccCCC--CC-hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC---CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC
Q 044812 179 FDEMPQ--RN-VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR---RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252 (547)
Q Consensus 179 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 252 (547)
+.+..+ |. .+.|+.|...+..+|+... |...|++..+ .-...|-.|...|-..+.+++|+..|.+. ..
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~---aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA-l~-- 280 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWL---AIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA-LN-- 280 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHH---HHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH-Hh--
Confidence 877654 33 3478888888888888887 6666666553 34578999999999999999999999887 33
Q ss_pred CCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHH
Q 044812 253 IEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-AITWSS 329 (547)
Q Consensus 253 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~ 329 (547)
..|+ ...+..+...|...|.++.|...+++..+.. +.=...|+.|..++...|++.+|.+.|++ +...|+ ..+.+.
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 4554 5678888888999999999999999998875 33466899999999999999999999987 333444 567899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHh
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGR 407 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 407 (547)
|...|...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|+..+++.. .+.|+ ...|+.+...|..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHH
Confidence 99999999999999999999988 4665 5678999999999999999999999887 66785 5789999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 408 AGQLDRALDFIKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
.|+.+.|.+.+.+. .+.|.. ..++.|...|...|++.+|+..|+.+++++|+.|.+|..++.++.-..+|.+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999887 667764 4889999999999999999999999999999999999999988766655544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-20 Score=189.99 Aligned_cols=226 Identities=11% Similarity=0.009 Sum_probs=174.2
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCChhhHHHHHHHHHhc
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-FNKDAITWSSIVSGYGLH 337 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~ 337 (547)
.+..+..++.. ++.++|...+....... |+......+...+...|++++|...|++.. ..|+...+..+...+.+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 34444444443 56666777666666543 444333344555568899999999998643 235555667777888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
|++++|...+++..+.. +++...+..+...+...|++++|...+++..+. .|+...+..+...+.+.|++++|...
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988764 223333334444555679999999999999854 57788899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 418 IKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 418 ~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+++. ...|+ ...+..+..++...|+.++|+.+++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9987 45564 55888888899999999999999999999999999999999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=179.51 Aligned_cols=448 Identities=14% Similarity=0.104 Sum_probs=351.9
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCC-cch--HHHHHHHHHhcCChhHH
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD-VYL--YNSLINGYVKNHGHNEA 105 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~ll~~~~~~~~~~~A 105 (547)
.+-..-....+-.+.++...... .......|..-.-+.|++.+|++.....-..| ..+ .-.+-..+.+..+.+..
T Consensus 24 ~ld~~~~s~~s~~v~qq~~~t~~--~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s 101 (966)
T KOG4626|consen 24 KLDQSVSSSGSSSVLQQFNKTHE--GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKS 101 (966)
T ss_pred HhccCcccccchHHHHHhccCCc--cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhh
Confidence 33333344444444444433321 12224556666778899999999877664322 111 22223445666677666
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 185 (547)
..--....+.. ..-..+|..+.+.+...|+++.|+..++.+++.. +..+..|..+..++...|+.+.|...|.+..+-
T Consensus 102 ~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 102 SAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 55544444432 2356789999999999999999999999999875 346788999999999999999999999888764
Q ss_pred Ch--hh-HHHHHHHHHcCCCchhHHHHHHHHhhcC---CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-H
Q 044812 186 NV--GS-WNVRISGHASSGDFSLVVRSRRVFDQMK---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-V 258 (547)
Q Consensus 186 ~~--~~-~~~li~~~~~~g~~~~a~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~ 258 (547)
|+ .. .+.+...+...|++++ |...+.+.. .--...|+.|...+-.+|+...|++.|++. .+ +.|+. .
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~e---a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA-vk--ldP~f~d 253 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEE---AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA-VK--LDPNFLD 253 (966)
T ss_pred CcchhhhhcchhHHHHhhcccch---hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh-hc--CCCcchH
Confidence 43 32 3344455666788888 444444433 234678999999999999999999999988 44 55653 5
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHHHHHHHHh
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-AITWSSIVSGYGL 336 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~ 336 (547)
.|..+...|...+.++.|...+.+..... +....++..+...|..+|.++.|+..|++ +...|+ ...|+.|..++-.
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 68889999999999999999998887765 44567788889999999999999999987 555666 5689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 414 (547)
.|++.+|.+.|.+.... .|+ ....+.|...+...|.+++|..+|....+ +.| -...++.|...|..+|++++|
T Consensus 333 ~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred ccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHH
Confidence 99999999999999885 555 56889999999999999999999998874 345 467789999999999999999
Q ss_pred HHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 415 LDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 415 ~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
+.-+++. .++|+.. .|+.++..|...|+...|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-++...+...
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999987 7889865 9999999999999999999999999999999999999999999999999999999999876543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-19 Score=182.34 Aligned_cols=421 Identities=10% Similarity=-0.008 Sum_probs=281.4
Q ss_pred HHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC
Q 044812 58 STKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 135 (547)
+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.++..++.+. .+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcC
Confidence 33455666777777777777777543 5666677777777777777777777777776431 13446666777777777
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhh
Q 044812 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215 (547)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~ 215 (547)
++++|...+......+...+.. ...++.-+........+...++.-. .+..++..+.. +........ ...-+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~---~~~~~~~ 282 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKP---RPAGLED 282 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCc---chhhhhc
Confidence 7777777666554433111111 1111111111111223333333221 22223332222 211111111 0011111
Q ss_pred cCCCC---hhhHHHHHHH---HHHCCCHHHHHHHHHHchhcCC-CCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 216 MKRRN---VYAWTAMING---YVQNGDLDEALVLFLEMQLKDR-IEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 216 ~~~~~---~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
..+.+ ...+..+... ....+++++|++.|+.. ...+ ..| ....+..+...+...|++++|...++...+..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a-l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA-LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH-HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11101 1111111111 12347899999999998 4433 334 34567778888889999999999999998875
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 365 (547)
+.....|..+..++...|++++|...|++. .. +.+...|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 334667888999999999999999999862 22 3456788999999999999999999999998863 2256777888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-------S-IWGALVSA 436 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~l~~~ 436 (547)
..++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|...|++. ...|+. . .++.....
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88899999999999999999864 2346788899999999999999999999986 333421 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...|++++|.++++++++.+|.+...+..++.++.+.|++++|++.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344699999999999999999999889999999999999999999999998654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=181.53 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC---hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
.++..+...+...|++++|..+++.+ ...+..++ ...+..+...+.+.|+++.|..++..+.+.. +.+..++..+
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 147 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNL-LSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQL 147 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 34444444555555555555555544 22211111 1234444445555555555555555554432 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC-CCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 299 IDMYSKCGSLDCARRVFEDSS-FNKD------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
+.++.+.|++++|.+.++.+. ..|+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHH
Confidence 777777777777777766531 0111 1234567777888899999999999988753 2245677778888999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAY 450 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 450 (547)
.|++++|.++++++.+. +......++..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..++
T Consensus 227 ~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 227 QGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998764 21222456788899999999999999999987 45677777788999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCccCCcc
Q 044812 451 KSLIQLEPENPSNYVSLSNLYAS---SRRWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
+++.+..|+++ .+..++..+.. .|+.+++..++++|.++++.++|.+
T Consensus 306 ~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 306 REQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 99999988765 56555655553 5699999999999999999999863
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-18 Score=180.78 Aligned_cols=483 Identities=10% Similarity=-0.020 Sum_probs=299.2
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHHHHHHHHhcCChhH
Q 044812 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLINGYVKNHGHNE 104 (547)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~ 104 (547)
...+...|++++|...++..++.. |-++.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++.+
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChh
Confidence 334444589999999999998886 44588889999999999999999999998865 4333344333222 88889
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHH-----ccCCCcHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChHHHHHH
Q 044812 105 ALELFSNMYYSNVSPDDFTLATISKLS-----GEIKDLNVGMLIHGLSIKIGFVVDVILANSL-MSMYVKCGKFSECLNL 178 (547)
Q Consensus 105 A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~ 178 (547)
|..+++++.+.... +..++..+.... ....+.+.|...++ .......|+..+.... .++|.+.|++++|++.
T Consensus 127 A~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 127 SVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999876422 334444444430 12233456666665 3333333345444444 7888889999999999
Q ss_pred hccCCCCChh---hHHHHHHHHHc-CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 179 FDEMPQRNVG---SWNVRISGHAS-SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 179 ~~~~~~~~~~---~~~~li~~~~~-~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
++++.+.+.. -...+...|.. .++ +. +..+++...+.+...+..++..|.+.|+.++|.++++++.....-.
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~---a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DR---LLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HH---HHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 8888764332 34455556666 355 43 5555555445678888888888999999999998888872111111
Q ss_pred CChHHHHhHH------------------------------HHh-------------------------------------
Q 044812 255 PNKVSLVSVL------------------------------PTC------------------------------------- 267 (547)
Q Consensus 255 p~~~~~~~ll------------------------------~~~------------------------------------- 267 (547)
|...++...+ ..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 2222111111 000
Q ss_pred --------------------------hccCCchhHHHHHHHHHHc-C-CCCchhHHHHHHHHHHhcC-------------
Q 044812 268 --------------------------SSLIGLSGGKQIHGFAIRK-E-LNHDVSLCNALIDMYSKCG------------- 306 (547)
Q Consensus 268 --------------------------~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g------------- 306 (547)
.+.|+.++|.+++...... + -.++......++..|.+.+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 1223344444444333321 0 0112222333444444433
Q ss_pred --------------------------------------------------CHHHHHHHHhc-CCCCCChhhHHHHHHHHH
Q 044812 307 --------------------------------------------------SLDCARRVFED-SSFNKDAITWSSIVSGYG 335 (547)
Q Consensus 307 --------------------------------------------------~~~~A~~~~~~-~~~~~~~~~~~~li~~~~ 335 (547)
+.++|...+.+ ....|+......+...+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33333333322 111233222222233334
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
..|++++|...|+++... .|+...+..+...+...|+.++|...+++..+. . +.....+..+...+.+.|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 677777777777776543 344444555666677778888888888777654 1 223333333444445569999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 416 DFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 416 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
..+++. ...|+...|..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|++.+++..+...
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-- 674 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-- 674 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence 999886 56788889999999999999999999999999999999999999999999999999999999999877543
Q ss_pred CCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHH
Q 044812 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532 (547)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (547)
+....+..+ ...+...++.+++...++++.+
T Consensus 675 ~~~~a~~nL-------A~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 675 DDPALIRQL-------AYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHh
Confidence 221111111 1222345566666666655443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-18 Score=178.22 Aligned_cols=420 Identities=9% Similarity=-0.032 Sum_probs=272.0
Q ss_pred cccccccccCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-C
Q 044812 9 TFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-D 85 (547)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~ 85 (547)
.+......+.++......+++..-.|+..+|.++++.+.... +.+...+..+...+.+.|++++|..+|+...+ | +
T Consensus 4 ~~~~~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 4 WLRQALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 334422345566678999999999999999999999998743 55566789999999999999999999999643 3 4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044812 86 VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165 (547)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 165 (547)
...+..+...+...|++++|+..+++..+.. |+...+..+..++...|+.++|...++++.+.. +.+...+..+..+
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5677788888999999999999999998763 433337788889999999999999999999875 3456666778888
Q ss_pred HHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHH-----HHCCCH---
Q 044812 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY-----VQNGDL--- 237 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~-----~~~~~~--- 237 (547)
+...|+.+.|++.++.... ++.....+ .......++... ...+++
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDL--------------------------EADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHH--------------------------HHHHHHHHHHhhcccccChhHHHHHH
Confidence 8889999999999988775 22100000 000011111111 111223
Q ss_pred HHHHHHHHHchhcCCCCCChH-HHH----hHHHHhhccCCchhHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHH
Q 044812 238 DEALVLFLEMQLKDRIEPNKV-SLV----SVLPTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 311 (547)
++|+..++.+.......|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 667777776622212233221 111 1122334556667777777776665422 221 122245567777777777
Q ss_pred HHHHhcC-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHhc
Q 044812 312 RRVFEDS-SFNKD-----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-----------KPD---IITIVGVLSACGR 371 (547)
Q Consensus 312 ~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~---~~~~~~l~~~~~~ 371 (547)
+..|++. ...|. ......+..++...|++++|..+++.+..... .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 7777653 11221 12344455566777777777777777765421 122 1234455556667
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|++++|++.++++... .+.+...+..+...+...|++++|++.+++. ...|+ ...+..++..+...|++++|+.+
T Consensus 372 ~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 77777777777777653 2335666677777777777777777777765 34454 34555566666777777777777
Q ss_pred HHHHHhhCCCCCc
Q 044812 450 YKSLIQLEPENPS 462 (547)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (547)
++++++..|+++.
T Consensus 450 ~~~ll~~~Pd~~~ 462 (765)
T PRK10049 450 TDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHhCCCCHH
Confidence 7777777777663
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-18 Score=172.74 Aligned_cols=355 Identities=11% Similarity=0.029 Sum_probs=232.9
Q ss_pred HhcCCchhHHHHhccCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHH
Q 044812 66 ALCGQPTQSQLVFNSIQH------KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139 (547)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 139 (547)
.+..+|+.---.|...++ .+......++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 345566666666666553 12233445566777889999999998888876433 34455555666677899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC
Q 044812 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219 (547)
Q Consensus 140 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~ 219 (547)
|...++.+.+.. +.+...+..+...+...|++++|...+++..+.+ +.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------------------------------P~ 142 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------------------------------SG 142 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------CC
Confidence 999999888865 4456677888888888899999888888765422 12
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...+..++..+...|++++|...++.+ ...... +...+.. +..+...|++++|...++.+.+....++......+.
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~-~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQ-AQEVPP-RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAV 219 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHH-HHhCCC-CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 4445566666666667777776666655 222111 1112222 223556666677766666665553223333444456
Q ss_pred HHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 044812 300 DMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHE----AVLLYNKMVCLGSKP-DIITIVGVLSACGRS 372 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~ 372 (547)
..+...|++++|...+++. .. +.+...+..+...+...|++++ |...|++..+. .| +...+..+...+...
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHC
Confidence 6677777777777777652 11 2345566677777777787774 67778777764 34 456777777778888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSI-WGALVSASVMHGNSEMQDLAY 450 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~ 450 (547)
|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++ ...|+... +..+..++...|+.++|...|
T Consensus 298 g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888777541 224556667777788888888888888776 34455433 334566777888888888888
Q ss_pred HHHHhhCCCC
Q 044812 451 KSLIQLEPEN 460 (547)
Q Consensus 451 ~~~~~~~~~~ 460 (547)
+++.+..|.+
T Consensus 376 ~~al~~~P~~ 385 (656)
T PRK15174 376 EHYIQARASH 385 (656)
T ss_pred HHHHHhChhh
Confidence 8888887765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=174.70 Aligned_cols=301 Identities=12% Similarity=0.082 Sum_probs=181.7
Q ss_pred HHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---cchHHHHHHHHccCCCc
Q 044812 64 AYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD---DFTLATISKLSGEIKDL 137 (547)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~ 137 (547)
.+...|++++|...|+++.+ | +..++..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34555677777777766653 2 234566666666777777777777776665422111 13455666667777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC
Q 044812 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217 (547)
Q Consensus 138 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~ 217 (547)
+.|..+|+.+.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.+......
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------- 177 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------- 177 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------
Confidence 77777777766543 3455666777777777777777777777665432210000
Q ss_pred CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH
Q 044812 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 218 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.....|..++..+.+.|++++|...|+++ .+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.
T Consensus 178 -~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 178 -EIAHFYCELAQQALARGDLDAARALLKKA-LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred -HHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 00112344555556666666666666665 3321 22234455555666666666666666666665432222345666
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cC
Q 044812 298 LIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR---SG 373 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g 373 (547)
++.+|.+.|++++|...++++ ...|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCc
Confidence 777777777777777777663 23456556667777777777788888777777664 5777777766666553 44
Q ss_pred cHHHHHHHHHHHHHhcCCCCchh
Q 044812 374 LINEGLEIYNSVINTYRIKPTTE 396 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~ 396 (547)
+.+++..+++++.++ ++.|++.
T Consensus 333 ~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 333 RAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred cchhHHHHHHHHHHH-HHhCCCC
Confidence 777777777777665 5555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-18 Score=174.31 Aligned_cols=402 Identities=11% Similarity=0.014 Sum_probs=292.3
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 128 (547)
+.++....-.+......|+.++|+++|..... .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 55666667777888888999999998888764 233357888888889999999999999987752 22345566777
Q ss_pred HHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHH
Q 044812 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208 (547)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 208 (547)
.++...|++++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+.++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P--------------------- 147 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP--------------------- 147 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------
Confidence 78888899999999999888764 44555 77788888888999999888888765332
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh------HHHHhHHHHh-----hccCCc---h
Q 044812 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK------VSLVSVLPTC-----SSLIGL---S 274 (547)
Q Consensus 209 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~------~~~~~ll~~~-----~~~~~~---~ 274 (547)
.+...+..+..++...+..++|++.++.. .. .|+. .....++... ...+++ +
T Consensus 148 ----------~~~~~~~~la~~l~~~~~~e~Al~~l~~~-~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 148 ----------QTQQYPTEYVQALRNNRLSAPALGAIDDA-NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred ----------CCHHHHHHHHHHHHHCCChHHHHHHHHhC-CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 34555666777777888888888888776 32 3321 0111222222 122233 6
Q ss_pred hHHHHHHHHHHc-CCCCchh-HHH----HHHHHHHhcCCHHHHHHHHhcCCCCC--Chh-hHHHHHHHHHhcCChHHHHH
Q 044812 275 GGKQIHGFAIRK-ELNHDVS-LCN----ALIDMYSKCGSLDCARRVFEDSSFNK--DAI-TWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 275 ~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~ 345 (547)
.|...++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+-... ++. ....+...|...|++++|..
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 778888888764 2223221 111 11334567799999999999854221 111 22225778999999999999
Q ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHhHhcC
Q 044812 346 LYNKMVCLGSKP---DIITIVGVLSACGRSGLINEGLEIYNSVINTYR----------IKPT---TEICACVVDMLGRAG 409 (547)
Q Consensus 346 ~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g 409 (547)
.|+++.+..... .......+..++...|++++|.++++.+..... -.|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 999987653211 134566677788999999999999999876421 0122 234566788899999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 410 QLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 410 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
++++|++.++++ ...| +...+..+...+...|++++|++.++++++..|+++..+..++..+.+.|++++|..+++++
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999997 3344 56688999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCC
Q 044812 488 KDRG 491 (547)
Q Consensus 488 ~~~~ 491 (547)
.+..
T Consensus 454 l~~~ 457 (765)
T PRK10049 454 VARE 457 (765)
T ss_pred HHhC
Confidence 7643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-16 Score=163.09 Aligned_cols=419 Identities=8% Similarity=-0.014 Sum_probs=291.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhc
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKN 99 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~ 99 (547)
+......+...|+++.|...++..++. .|++..|..+..+|.+.|++++|++.++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667788889999999999998875 57888999999999999999999999998765 3 456888899999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 044812 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 179 (547)
|++++|+.-|......+.. +......++..+.. ..+........+.. +++...+..+.. |...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 9999999988776554211 11111112111111 12222222222322 222222322222 22222222222212
Q ss_pred ccCCCCCh---hhHHHHHHHH---HcCCCchhHHHHHHHHhhcC------CCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 180 DEMPQRNV---GSWNVRISGH---ASSGDFSLVVRSRRVFDQMK------RRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 180 ~~~~~~~~---~~~~~li~~~---~~~g~~~~a~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
+...+.+. ..+..+...+ ...+++++ |.+.|+... ......|+.+...+...|++++|+..|++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~---A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEE---AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHH---HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22111111 1111111111 22345556 555554443 234567888899999999999999999988
Q ss_pred hhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-Ch
Q 044812 248 QLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DA 324 (547)
Q Consensus 248 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~ 324 (547)
.. ..|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++ +...| +.
T Consensus 358 -l~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 358 -IE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred -HH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 44 3454 5578888888999999999999999998875 55678899999999999999999999987 33344 46
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch-h-------
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-E------- 396 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~------- 396 (547)
..+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. .|+. .
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~ 509 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHH
Confidence 678888899999999999999999998752 335778889999999999999999999998754 2321 1
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
.++.....+...|++++|.+++++. ...|+. ..+..++..+...|++++|++.|+++.++.+...
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 1222233344579999999999985 555654 4788999999999999999999999999876533
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-16 Score=158.62 Aligned_cols=430 Identities=9% Similarity=-0.011 Sum_probs=311.6
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHH---HHHHH
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISN--PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL---INGYV 97 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~ 97 (547)
...-+.+..+.|++..|...++++++.. |+ +.++ .++..+...|+.++|+..+++...|+...+..+ ...+.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4455556777899999999999998885 44 2344 888888899999999999999987754444433 34677
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 044812 98 KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177 (547)
Q Consensus 98 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 177 (547)
..|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 779999999999999986533 4566667788889999999999999998775 4555555555555555666766999
Q ss_pred HhccCCC--C-ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC---Chh------hHHHHHHHH---H--HCCC---H
Q 044812 178 LFDEMPQ--R-NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR---NVY------AWTAMINGY---V--QNGD---L 237 (547)
Q Consensus 178 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~---~~~------~~~~li~~~---~--~~~~---~ 237 (547)
.++++.+ | +...+..+..+..+.|-... |.++...-+.- ... ....+++.- . ...+ .
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~---a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEP---ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH---HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999876 3 34466777788888888887 66666655421 110 011111110 0 1122 3
Q ss_pred HHHHHHHHHchhcCCCCCChH-----HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044812 238 DEALVLFLEMQLKDRIEPNKV-----SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (547)
+.|+.-++.+....+..|... ...-.+-++...++..++.+.++.+...+.+....+-..+.++|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 455666666533333334322 223445678888999999999999998887766778889999999999999999
Q ss_pred HHHhcCC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--CH-HHHHHHHHHHh
Q 044812 313 RVFEDSS--------FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-----------KP--DI-ITIVGVLSACG 370 (547)
Q Consensus 313 ~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~-~~~~~l~~~~~ 370 (547)
.+|++.- ..++......|.-+|...+++++|..+++++.+.-. .| |- ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9998741 012333357788899999999999999999987311 12 22 33445667788
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 448 (547)
..|++.+|++.++++... -+-|......+.+.+...|.+.+|+..++.. ...|+ ..+....+.++...+++.+|..
T Consensus 428 ~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999999754 2448888899999999999999999999776 44565 4577788888889999999999
Q ss_pred HHHHHHhhCCCCCch
Q 044812 449 AYKSLIQLEPENPSN 463 (547)
Q Consensus 449 ~~~~~~~~~~~~~~~ 463 (547)
+.+.+.+..|+++.+
T Consensus 506 ~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 506 LTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhCCCchhH
Confidence 999999999988744
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-17 Score=163.26 Aligned_cols=356 Identities=10% Similarity=0.009 Sum_probs=270.8
Q ss_pred HHhcCChhHHHHHHHHhhhC--CCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044812 96 YVKNHGHNEALELFSNMYYS--NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173 (547)
Q Consensus 96 ~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 173 (547)
+.++.+|+.---+|..-.++ .-.-+......++..+.+.|+++.|..+++..+.... -+......++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHH
Confidence 34555665554455444332 1111333455567777788888888888888777653 33445555666677788888
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCC
Q 044812 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253 (547)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 253 (547)
+|...|+++.+.+ +.+...+..+...+...|++++|+..|++. .. +
T Consensus 94 ~A~~~l~~~l~~~-------------------------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A-l~--l 139 (656)
T PRK15174 94 AVLQVVNKLLAVN-------------------------------VCQPEDVLLVASVLLKSKQYATVADLAEQA-WL--A 139 (656)
T ss_pred HHHHHHHHHHHhC-------------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--h
Confidence 8888887765433 245667888899999999999999999998 44 3
Q ss_pred CC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCC--CChhhHHH
Q 044812 254 EP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFN--KDAITWSS 329 (547)
Q Consensus 254 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~ 329 (547)
.| +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+ ... ++...+..
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 44 4567788889999999999999999988776533 33344333 3478899999999999873 211 23344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE----GLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++ |...|++..+.. +.+...+..+...+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l 294 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Confidence 6778899999999999999999864 3356778888899999999986 899999988541 33677899999999
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++.+.+|.++..+..++.++...|++++|.+.
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987 44554 557888899999999999999999999999998877777788999999999999999
Q ss_pred HHHHHhCC
Q 044812 484 RTMMKDRG 491 (547)
Q Consensus 484 ~~~m~~~~ 491 (547)
+++..+..
T Consensus 375 l~~al~~~ 382 (656)
T PRK15174 375 FEHYIQAR 382 (656)
T ss_pred HHHHHHhC
Confidence 99987654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-16 Score=153.40 Aligned_cols=482 Identities=11% Similarity=0.081 Sum_probs=324.8
Q ss_pred ccccCCcccccccccCCcch-HHHHHHHHHhcc---CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHh
Q 044812 3 LSSARNTFALVTSRNYTSAT-VQHFLQVSATHR---SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78 (547)
Q Consensus 3 ~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 78 (547)
.+.|.-.|.++.+-+|+... +..|..+-.... .+..+.+++...-.-. +-||.+.+.|.+-|.-.|+++.+..+.
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHH
Confidence 44566666666666663332 222222222222 2333344444333332 456778888888888888888888887
Q ss_pred ccCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH--HHHHHHHccCCCcHHHHHHHHHHHHh
Q 044812 79 NSIQHK------DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL--ATISKLSGEIKDLNVGMLIHGLSIKI 150 (547)
Q Consensus 79 ~~~~~~------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (547)
..+... -..+|-.+.+++-..|++++|...|.+..+. .||.+++ .-|.+.+.+.|+++.+...|+...+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 776532 1345677788888888888888888777654 3454443 34677888888888888888888776
Q ss_pred CCCCchhHHHHHHHHHHhcC----ChHHHHHHhccCCCC---ChhhHHHHHHHHHcCCCchh---HHHHHHHHhh-cCCC
Q 044812 151 GFVVDVILANSLMSMYVKCG----KFSECLNLFDEMPQR---NVGSWNVRISGHASSGDFSL---VVRSRRVFDQ-MKRR 219 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~---a~~a~~~~~~-~~~~ 219 (547)
. +.+..+...|...|...+ ..+.|..++.+..++ |...|-.+...+-...-... ...|.+++.. +...
T Consensus 372 ~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 372 L-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred C-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 3 445667777777777665 456777777766654 33455444444433332211 1334433333 3345
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC---CCCCC------hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---RIEPN------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 290 (547)
.+...|.+...+...|++.+|...|+.. ... ...+| ..+-..+....-..++.+.|.+.|..+.+.. +.
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A-~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~ 528 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSA-LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PG 528 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHH-hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-ch
Confidence 7778888888899999999999988876 332 12222 2344456666777888899999998888764 22
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~ 367 (547)
-+..|-.++.+....+...+|...+++.. ...++..++.+...+.....+..|.+-|....+.- ..+|..+...|.+
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 23344444444444577788888887632 14556667777778888888888888777665542 2356666666666
Q ss_pred HHhc------------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 044812 368 ACGR------------SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGAL 433 (547)
Q Consensus 368 ~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 433 (547)
.|.. .+..++|+++|.++.+. -+.|...-|-+.-.++..|++.+|.++|.+.. ......+|..+
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 5542 24567888888888753 24477888888889999999999999999872 22345688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
..+|...|++..|+++|+...+.. .+++.+...|++++.+.|++.+|.+.+........
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999998763 56778899999999999999999999888765543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-15 Score=149.85 Aligned_cols=422 Identities=10% Similarity=0.024 Sum_probs=304.6
Q ss_pred HHHHHhcCCchhHHHHhccCCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc-hHHHH--HHHHccCC
Q 044812 62 ITAYALCGQPTQSQLVFNSIQH--KDVY-LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF-TLATI--SKLSGEIK 135 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~~ 135 (547)
+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 3345788999999999999875 4431 23388888889999999999999998 34333 33333 55788889
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhh
Q 044812 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215 (547)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~ 215 (547)
++++|..+++++.+.. +.+...+..++..+...++.++|++.++++...+......+..++...+ ..+..+|.+.+++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~-~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA-TDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 9999999999999876 4456777788899999999999999999998755443333555555533 2222236666655
Q ss_pred cC---CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHH------HhHHHHh-----hccCCc---hhHHH
Q 044812 216 MK---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL------VSVLPTC-----SSLIGL---SGGKQ 278 (547)
Q Consensus 216 ~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~------~~ll~~~-----~~~~~~---~~a~~ 278 (547)
+. +.+...+..+..++.+.|-...|+++..+- .. -+.+...-. ...++.- ....++ +.|..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~-p~-~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN-PN-LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC-cc-ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 54 446778889999999999999999888754 21 122222111 1111111 112233 33444
Q ss_pred HHHHHHHc-CC-CCchhHH----HHHHHHHHhcCCHHHHHHHHhcCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 044812 279 IHGFAIRK-EL-NHDVSLC----NALIDMYSKCGSLDCARRVFEDSSFNK---DAITWSSIVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 279 ~~~~~~~~-~~-~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 349 (547)
-++.+... +. ++....| .-.+-++...|+..++++.|+.+.... ...+-..+..+|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444431 11 2222222 234556778899999999999876222 234567788999999999999999999
Q ss_pred HHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC----------CCc---hhHHHHHHHHhHhcCCH
Q 044812 350 MVCLG-----SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI----------KPT---TEICACVVDMLGRAGQL 411 (547)
Q Consensus 350 m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~ 411 (547)
+.... ..++......|.-++...+++++|..+++.+.+.... .|+ ...+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87653 1224444678899999999999999999999763110 122 23345567888999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+|++.++++ ...| |......+...+...|.+.+|++.++.+...+|++..+...++.++...|+|++|..+.+...+
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999998 3344 7788999999999999999999999999999999999999999999999999999999877755
Q ss_pred CC
Q 044812 490 RG 491 (547)
Q Consensus 490 ~~ 491 (547)
..
T Consensus 513 ~~ 514 (822)
T PRK14574 513 RS 514 (822)
T ss_pred hC
Confidence 43
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-15 Score=146.37 Aligned_cols=482 Identities=11% Similarity=0.045 Sum_probs=231.5
Q ss_pred cccCCcccccccccC-CcchHHHHHHHHHhccCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCchhHHHHhcc
Q 044812 4 SSARNTFALVTSRNY-TSATVQHFLQVSATHRSLKLTKQSHSQILSLG--HISNPFVSTKLITAYALCGQPTQSQLVFNS 80 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 80 (547)
++|...|..+.+..| ..+.+.--+.+....+++..|..+|...+... ..||+.. -+...+.+.|+.+.|+..|..
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHH
Confidence 345555666655444 33344555556666678888888888755543 3444432 233455667777777777776
Q ss_pred CCCCCcchHHHHHHHH---Hhc---CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCC
Q 044812 81 IQHKDVYLYNSLINGY---VKN---HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154 (547)
Q Consensus 81 ~~~~~~~~~~~ll~~~---~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 154 (547)
..+-|+..-++++... ... ..+..++.++...-..+. -|+...+.|...+.-.|+++.+.++...+.......
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 6554333333222111 111 223344444444333221 244455555555555566666655555555443111
Q ss_pred --chhHHHHHHHHHHhcCChHHHHHHhccCCC--CC--hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHH
Q 044812 155 --DVILANSLMSMYVKCGKFSECLNLFDEMPQ--RN--VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228 (547)
Q Consensus 155 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li 228 (547)
-...|-.+.++|...|++++|...|.+..+ +| +..+--+.+.+.+.|+++.+....+-+-...+.+..+...|.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 122344455566666666666655554443 11 123334445555555555533332222222233444444444
Q ss_pred HHHHHCC----CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHH----HHcCCCCchhHHHHHHH
Q 044812 229 NGYVQNG----DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA----IRKELNHDVSLCNALID 300 (547)
Q Consensus 229 ~~~~~~~----~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~ 300 (547)
..|...+ ..+.|..++.+. .+. .+.|...|..+...+....-+ ....++..+ ...+..+.+...|.+..
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~-~~~-~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKV-LEQ-TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHH-Hhc-ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 4444443 334444444443 111 122333343333333322222 113333222 23333344455555555
Q ss_pred HHHhcCCHHHHHHHHhcC-C-----CCCCh------hhHHHHHHHHHhcC------------------------------
Q 044812 301 MYSKCGSLDCARRVFEDS-S-----FNKDA------ITWSSIVSGYGLHG------------------------------ 338 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~-----~~~~~------~~~~~li~~~~~~~------------------------------ 338 (547)
.+...|++++|...|.+. + ..++. .+-..+...+-..+
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 555555555555555421 0 01111 11112222333333
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH--------
Q 044812 339 ----KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG-------- 406 (547)
Q Consensus 339 ----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 406 (547)
...+|..+++...... ..++.....+...+.....+..|.+-|....+.....+|+...-.|.+.|.
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 4444555554444321 122233333333444444555555544444333222234333333333332
Q ss_pred ----hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH
Q 044812 407 ----RAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 407 ----~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 480 (547)
..+..++|+++|.+. ...| |...-+.++-.++..|++..|..+|.++.+-..+.+.+|..++.+|..+|+|-.|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 123456666676654 3333 5556666677777777777777777777776555666777788888888888888
Q ss_pred HHHHHHHHhCCC
Q 044812 481 AELRTMMKDRGL 492 (547)
Q Consensus 481 ~~~~~~m~~~~~ 492 (547)
+++|+...+.-.
T Consensus 700 IqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 700 IQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHhc
Confidence 887776654433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-14 Score=126.15 Aligned_cols=411 Identities=13% Similarity=0.106 Sum_probs=239.3
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CCchhH-HHHhccCC-----------------
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQS-QLVFNSIQ----------------- 82 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--~~~~~A-~~~~~~~~----------------- 82 (547)
-+.++. +-..|.+.++.-+++.|.+.|++.++.+-..|++.-+-. .++.=| ++.|-.|.
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 344444 345689999999999999999999988877777754432 222211 12222221
Q ss_pred ------CCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCch
Q 044812 83 ------HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156 (547)
Q Consensus 83 ------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 156 (547)
.....+|..+|.++++--..++|.++|++-.....+.+..+||.+|.+..-..+ ++++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 134578999999999999999999999999988888999999999987654433 8899999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHH----HHhccCCC----CChhhHHHHHHHHHcCCCchhHHH--HHHHHhhcC--------C
Q 044812 157 ILANSLMSMYVKCGKFSECL----NLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVR--SRRVFDQMK--------R 218 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~----~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~--a~~~~~~~~--------~ 218 (547)
.|+|+++.+..+.|+++.|. +++.+|++ |...+|..+|..+++.++..++.. ..++...+. .
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999999887654 45566654 566677777777777777644211 112222221 1
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC---C-CCCCh---HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---R-IEPNK---VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~-~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 291 (547)
.|...|...+..|....+.+.|.++-.-. +.. . +.|+. .-|..+....++....+.....|+.|+..-+-|+
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll-~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLL-KTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHH-HcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 23444555555555666666555554433 111 0 11221 1233344444445555555555555554444445
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII---TIVGVLSA 368 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~ 368 (547)
..+...++++..-.|.++-.-+++.++. .|...-+-+--.+++..|......|+.. -+.....-
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~-------------~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSK-------------EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHH-------------HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 4454445554444444444444443322 0000111112223333333333333222 12222111
Q ss_pred HhccCcHHHHHH-HHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHc
Q 044812 369 CGRSGLINEGLE-IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-------PVEPSPSIWGALVSASVMH 440 (547)
Q Consensus 369 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 440 (547)
|+. ++.++.+ .-.++. .........+.+.-.+.+.|+.++|.+++... +..|......-++....+.
T Consensus 500 ~aa--d~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 500 CAA--DIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHH--HHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 110 1111111 111222 22334556666777778888888888877654 2334444455666777777
Q ss_pred CCHHHHHHHHHHHHhhC
Q 044812 441 GNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~ 457 (547)
+++..|..+++-+...+
T Consensus 575 ~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 78888888888776655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-15 Score=132.66 Aligned_cols=446 Identities=13% Similarity=0.083 Sum_probs=305.5
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCchhHHHHhccCCC--CC------cchHHHHH
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVS-TKLITAYALCGQPTQSQLVFNSIQH--KD------VYLYNSLI 93 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~ll 93 (547)
+..+++-+.......+|...++-+++...-|+.... -.+.+.+.+.+++.+|++.|+.... |+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 566677777778888899999999988888876543 3455677888899999998876543 32 23445555
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc------------hhHHHH
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD------------VILANS 161 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~------------~~~~~~ 161 (547)
-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....+| ....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678899999999999988764 47776655566666778899999999999886533222 222222
Q ss_pred -----HHHHHHhcCC--hHHHHH----HhccCCCCChh-------------hHHH--------HHHHHHcCCCchhHHHH
Q 044812 162 -----LMSMYVKCGK--FSECLN----LFDEMPQRNVG-------------SWNV--------RISGHASSGDFSLVVRS 209 (547)
Q Consensus 162 -----l~~~~~~~g~--~~~A~~----~~~~~~~~~~~-------------~~~~--------li~~~~~~g~~~~a~~a 209 (547)
.++-+-+..+ .++++- +..-...++.. .+.. -...+.++|+++.|.+.
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 2222222221 122221 22222222211 0100 11246788888887777
Q ss_pred HHHHhhcCCCChh-hHHHHHH-HHHH-CCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc
Q 044812 210 RRVFDQMKRRNVY-AWTAMIN-GYVQ-NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286 (547)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~li~-~~~~-~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 286 (547)
+++|+.-...... .-+.|-. -|.+ -.++..|.++-+.. .. .-.-+......-.......|++++|...+.+....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a-ln-~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA-LN-IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH-hc-ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 7777665433221 1222221 2222 34566666665554 11 11223333333344556789999999999998876
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044812 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364 (547)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 364 (547)
.-.-....|| +.-.+...|++++|++.|-++. +..+......+...|-...+..+|.+++.+.... ++.|+....-
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 5333333444 4445778899999999997642 1345566677788898899999999999877664 4557888999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSAS-VMHGN 442 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~~~ 442 (547)
|...|-+.|+-.+|.+.+-.--+ -++.+.++..-|..-|....-+++|..+|++. -++|+..-|..++..| .+.|+
T Consensus 598 l~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 99999999999999887664432 34558899998999999999999999999997 5789999999888655 57899
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
+.+|.++|+...+.-|.+......|++.+...|.
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999999888775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-13 Score=121.94 Aligned_cols=351 Identities=9% Similarity=0.095 Sum_probs=249.1
Q ss_pred CCCChhHHHHHHHHHHhcCCchhHHHHhccCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHH
Q 044812 51 HISNPFVSTKLITAYALCGQPTQSQLVFNSIQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126 (547)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 126 (547)
.+-++.++..+|.++|+-...+.|.+++++... -+..++|.+|.+-. +..-.+++.+|....++||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHH
Confidence 466889999999999999999999999998765 35667777776543 3334889999999999999999999
Q ss_pred HHHHHccCCCcHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH-HHHHhccCCC------------CChhh
Q 044812 127 ISKLSGEIKDLNV----GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE-CLNLFDEMPQ------------RNVGS 189 (547)
Q Consensus 127 l~~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------~~~~~ 189 (547)
++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. .|..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998874 56788999999999999999999999999888744 4444444321 13345
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhcCC-----C---ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHH
Q 044812 190 WNVRISGHASSGDFSLVVRSRRVFDQMKR-----R---NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~a~~~~~~~~~-----~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~ 261 (547)
+..-+..|.+..+.+.|.+...+++.-.. + ...-|..+....++....+.-+.+|+.| .-.-+-|+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l-VP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL-VPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccceecCCchhHH
Confidence 66667778888888887777777766542 2 2234667778888999999999999999 6777889999999
Q ss_pred hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh--cCC
Q 044812 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL--HGK 339 (547)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~--~~~ 339 (547)
.++++....+.++-.-+++..++..|.........-++..+++ ....|+...-..+-....+ ..-
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~-------------~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR-------------DKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc-------------CCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754443333333333332 2223332222222111111 111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH---HHHHHhHhcCCHHHHHH
Q 044812 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA---CVVDMLGRAGQLDRALD 416 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~ 416 (547)
.+.....-.+|.+..+.| ...+.+...+.+.|..++|.+++..+.+.+.-.|.....| -+++.-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 222233344555554444 4445555567888888888888888865544444444444 55666677788888888
Q ss_pred HHHhC
Q 044812 417 FIKTM 421 (547)
Q Consensus 417 ~~~~~ 421 (547)
.++-|
T Consensus 583 ~lQ~a 587 (625)
T KOG4422|consen 583 VLQLA 587 (625)
T ss_pred HHHHH
Confidence 88776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-13 Score=119.79 Aligned_cols=434 Identities=12% Similarity=0.083 Sum_probs=288.8
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHhccCCC----CCcc-hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc----hHH
Q 044812 55 PFVSTKLITAYALCGQPTQSQLVFNSIQH----KDVY-LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF----TLA 125 (547)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~ 125 (547)
-.+...|.+-|.......+|+..|+.+.+ |+.- .--.+...+.+.+++.+|++.|.-.+..-...+.. ..+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 44555667778888889999999988764 3322 11223456678889999999998877642222222 344
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----------------CChhh
Q 044812 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ----------------RNVGS 189 (547)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~ 189 (547)
.+...+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 4555678999999999999998875 57777766677788888999999999988753 11111
Q ss_pred HHH-----HHHHHHcCCCchhHHHHHHHHhhcC----CCChh-------------hHH--------HHHHHHHHCCCHHH
Q 044812 190 WNV-----RISGHASSGDFSLVVRSRRVFDQMK----RRNVY-------------AWT--------AMINGYVQNGDLDE 239 (547)
Q Consensus 190 ~~~-----li~~~~~~g~~~~a~~a~~~~~~~~----~~~~~-------------~~~--------~li~~~~~~~~~~~ 239 (547)
.+. .+.-+-+... ..|+.+.-.--++. .|+-. .|. .-...|.+.|+++.
T Consensus 359 l~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 111 1222222221 11222222222221 22110 111 12345789999999
Q ss_pred HHHHHHHchhcCCCCCChHHHH--hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 240 ALVLFLEMQLKDRIEPNKVSLV--SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 240 A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
|+++++-. .+...+.-...-+ +.+.-+....++..|.++-+..+... ..+......-.+.....|++++|.+.|++
T Consensus 438 aieilkv~-~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVF-EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHH-HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999888 4433332222222 22333333456777777777665443 23333333334445567999999999988
Q ss_pred CCCCCChhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 044812 318 SSFNKDAITWSSI---VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394 (547)
Q Consensus 318 ~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 394 (547)
.- ..|..+...| .-.+-..|+.++|++.|-++..- +..+......+.+.|....+..+|++++.+... -++.|
T Consensus 516 al-~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~d 591 (840)
T KOG2003|consen 516 AL-NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPND 591 (840)
T ss_pred HH-cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCC
Confidence 54 3444433333 33467789999999999888664 344677788888889999999999999887752 34558
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
+.+...|.+.|-+.|+-.+|.+..-+. . +.-+..+..-|...|....-.++++..|+++.-+.|.........+.++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 899999999999999999999886554 3 34577788888888999999999999999998888865444444556677
Q ss_pred cCCCHHHHHHHHHHHHhCCCccCCcc
Q 044812 473 SSRRWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
+.|+++.|.++++...++ ++.+..|
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldc 696 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDC 696 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHH
Confidence 899999999999998754 3344444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=142.97 Aligned_cols=257 Identities=18% Similarity=0.180 Sum_probs=113.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044812 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304 (547)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (547)
.+...+.+.|++++|+++++.. .....+|+. ..|..+...+...++++.|...++.+...+. .+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~-~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKA-AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cc
Confidence 4578888999999999999654 233223444 4444555667778999999999999988763 356677777777 78
Q ss_pred cCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.+++++|.+++++. ...++...+..++..+.+.++++++..+++...... .+++...|..+...+.+.|+.++|++.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998763 224566777888899999999999999999987543 3456778888889999999999999999
Q ss_pred HHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 383 NSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 383 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
++..+. .| +......++..+...|+.+++.++++... ...|+..|..+..++...|+.++|+..++++.+.+|.
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999875 45 57888899999999999999888877661 2345567889999999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|+.....++.++...|+.++|.++..+..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-11 Score=110.78 Aligned_cols=451 Identities=11% Similarity=0.067 Sum_probs=260.2
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHH
Q 044812 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFS 110 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~ 110 (547)
....+|.-++...++. ++.+...| -+|++..-++.|..++++..+ .+...|-+-...--.+|+.+...+++.
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444455555555554 22233333 334444555666666655543 244445444444445566665555554
Q ss_pred H----hhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCC----------------------------------
Q 044812 111 N----MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF---------------------------------- 152 (547)
Q Consensus 111 ~----m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---------------------------------- 152 (547)
+ +...|+..+...|..=...|-..|..-.+..+....+..|+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 4 23345555555444444444444444444444444444443
Q ss_pred --CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhc---CCCChhhH
Q 044812 153 --VVDVILANSLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQM---KRRNVYAW 224 (547)
Q Consensus 153 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~---~~~~~~~~ 224 (547)
+.+...|......--..|..++-..+|++... .....|-.....+...|+... |+.++... ...+...|
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~---ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPA---ARVILDQAFEANPNSEEIW 621 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHH---HHHHHHHHHHhCCCcHHHH
Confidence 22333344333333334444444444444432 122234444444455555555 33333322 22345556
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044812 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304 (547)
Q Consensus 225 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (547)
-.-+.....+.+++.|..+|.+. .. ..|+...|.--+..---.++.++|.+++++..+.- +.-...|..+...+-+
T Consensus 622 laavKle~en~e~eraR~llaka-r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKA-RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHH-hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHH
Confidence 66666666666666666666655 22 45555555555555555566666666666655542 3334455666666666
Q ss_pred cCCHHHHHHHHhc-CCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFED-SSFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~-~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.++++.|...|.. ....|+. ..|-.|...--+.|++-+|..++++..-.+ +-+...|...|+.-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666654 2223433 345555555556666667777776666553 224556666666666777777777766
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
.+..+. .+.+...|..-|....+.++-....+.+++.. .|+.+...+...+....++++|.+.|.++++.+|++..
T Consensus 777 akALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 666653 24455666666666666666666666666653 45666677778888889999999999999999999999
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEee
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 503 (547)
+|..+...+.+.|.-++-.+++++..... |.-+-.|..+
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 99999999999999999999999876543 4445556544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-12 Score=127.48 Aligned_cols=319 Identities=11% Similarity=0.104 Sum_probs=225.7
Q ss_pred HHhcCChHHHHHHhccCCCC---ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHH
Q 044812 166 YVKCGKFSECLNLFDEMPQR---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (547)
....|++++|.+++.++.+. +...|..|..+|-..|+.+++....-+.-.+.+.|...|-.+.....+.|++++|.-
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33347777777777766542 344677777777777777775555555555666677888888888888888888888
Q ss_pred HHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHhcC
Q 044812 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC----NALIDMYSKCGSLDCARRVFEDS 318 (547)
Q Consensus 243 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 318 (547)
+|.+. .+. -+++...+.--...|-+.|+...|...+.++.....+.+..-+ ...++.+...++-+.|.+.++..
T Consensus 229 cy~rA-I~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRA-IQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHH-Hhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88887 332 3445555555667778888888888888888876543333222 33455666677778888877652
Q ss_pred C----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHH
Q 044812 319 S----FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL---------------------------GSKPDIITIVGVLS 367 (547)
Q Consensus 319 ~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------g~~p~~~~~~~l~~ 367 (547)
- -.-+...++.++..|.+...++.|......+... ++.++...+ -+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 1 1234455778888888888888888887777652 122232331 1222
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHhHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCC
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRI--KPTTEICACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVSASVMHGN 442 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~ 442 (547)
++......+....+....... .+ .-+...|.-+.++|...|++.+|+.+|..+. ...+...|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 333333333333333333333 43 3367889999999999999999999999983 22357799999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++.|.+.|++++...|++..+-..|...+.+.|+.++|.++++.|.
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-12 Score=119.44 Aligned_cols=381 Identities=15% Similarity=0.126 Sum_probs=255.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-cchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 044812 90 NSLINGYVKNHGHNEALELFSNMYYSNVSPD-DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-VILANSLMSMYV 167 (547)
Q Consensus 90 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~ 167 (547)
-....-|-++|++++|++.|.+.++. .|| +..|.....+|...|+|+.+.+--...++. .|+ ...+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455677889999999999999874 578 777888999999999999998888777765 344 345566667888
Q ss_pred hcCChHHHHHH------hccCCCCChhhHHHHHH-HHHcCCCchhHHHHHHHHhhcCC---CCh----------------
Q 044812 168 KCGKFSECLNL------FDEMPQRNVGSWNVRIS-GHASSGDFSLVVRSRRVFDQMKR---RNV---------------- 221 (547)
Q Consensus 168 ~~g~~~~A~~~------~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~a~~~~~~~~~---~~~---------------- 221 (547)
..|++++|+.- ++......+. .++. .+-+.|. ..+.+.+..-.. |+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~---~~~eR~Lkk~a~----~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIE---PMAERVLKKQAM----KKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhH---HHHHHHHHHHHH----HHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 88888887642 2222211111 1111 0000000 012222221011 111
Q ss_pred -------hhHHHHHHHHHH--CC---CHHHHHHHHHHchhcCCCCCC-----------hHHHHhHHHHhhccCCchhHHH
Q 044812 222 -------YAWTAMINGYVQ--NG---DLDEALVLFLEMQLKDRIEPN-----------KVSLVSVLPTCSSLIGLSGGKQ 278 (547)
Q Consensus 222 -------~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~~~~~p~-----------~~~~~~ll~~~~~~~~~~~a~~ 278 (547)
.++..+..++.. .+ .+.+|...+.+-....-..++ ..+......-+.-.|+.-.+..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 112222222211 11 334444443322011111111 1112222222344678888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044812 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 355 (547)
-|+..++....+ ...|--+..+|....+.++....|++ +. +-|+.+|..-.+.+.-.+++++|..=|++.+..
T Consensus 348 d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-- 423 (606)
T KOG0547|consen 348 DFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-- 423 (606)
T ss_pred hHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 898888876333 33477778889999999999999986 44 456778888888888889999999999999884
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-------
Q 044812 356 KP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS------- 426 (547)
Q Consensus 356 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------- 426 (547)
.| +...|..+.-+..+.++++++...|++..++ ++-.++.|+.....+...+++++|.+.|+.. ...|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 55 4567777777778899999999999999875 4667899999999999999999999999976 33343
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 427 --PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 427 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+.+--.++..-. .+++..|+++++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 502 ~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 502 AAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred chhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222222222223 3899999999999999999999999999999999999999999999753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-12 Score=115.00 Aligned_cols=329 Identities=14% Similarity=0.114 Sum_probs=241.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChh-hHHHHHH
Q 044812 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY-AWTAMIN 229 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~-~~~~li~ 229 (547)
+...|...+-.....+.+.|..+.|+..|......-+..|...+...--..+.+. +..+....+..+.. .=-.+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~---~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI---LSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH---HHHHHhcCcccchHHHHHHHHH
Confidence 4455666555556667788999999999988776555555555444333333222 11111112111111 1112445
Q ss_pred HHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCC
Q 044812 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 230 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 307 (547)
++....+.++++.-.... ...|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.-.....
T Consensus 236 a~~el~q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 666677888888888887 77777777776677777778889999999999999987421 256677776644333222
Q ss_pred H-HHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 044812 308 L-DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSV 385 (547)
Q Consensus 308 ~-~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 385 (547)
+ --|..+++--... +.|..++..-|.-.++.++|..+|++..+. .|. ...++.+.+-|....+...|.+-++.+
T Consensus 315 Ls~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2 2344444333333 345566777788889999999999999985 454 567888888899999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
++- .+.|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|..|+.+|.+.++.++|++.|.++...+-.+..+
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 853 1348899999999999999999999999998 5666 67799999999999999999999999999998778889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 464 YVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+..|+.+|.+.++.++|...+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999887754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-10 Score=112.67 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=121.8
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccC---CCCCcchHHHHHHHHHhcCChh
Q 044812 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI---QHKDVYLYNSLINGYVKNHGHN 103 (547)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~ 103 (547)
+..+...|+..+|..++.++.+.. +.++..|-+|...|-..|+.+++...+-.. ...|...|-.+.....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 334555599999999999999886 667888999999999999999988876443 2345577888888888888888
Q ss_pred HHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCChHHHHHHh
Q 044812 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN----SLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 104 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~A~~~~ 179 (547)
.|.-.|.+.++... ++...+---...|-+.|+...|...|.++.....+.|..-+. ..++.|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888887642 243344445567777888888888888887765333332222 2344556666667777766
Q ss_pred ccCCC--C---ChhhHHHHHHHHHcCCCchhH
Q 044812 180 DEMPQ--R---NVGSWNVRISGHASSGDFSLV 206 (547)
Q Consensus 180 ~~~~~--~---~~~~~~~li~~~~~~g~~~~a 206 (547)
+.... . +...++.++..+.+...++.+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~ 335 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKA 335 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHh
Confidence 65543 1 233556666666666655554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-10 Score=104.26 Aligned_cols=476 Identities=10% Similarity=0.075 Sum_probs=330.2
Q ss_pred ccCCcccccccccCCcch-HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC-
Q 044812 5 SARNTFALVTSRNYTSAT-VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ- 82 (547)
Q Consensus 5 ~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 82 (547)
-|++.|++.+.-+....+ -..++..=.++..+..|+.+|+..+..-...|. .|-..+-.=-..|++..|.++|+...
T Consensus 91 RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~ 169 (677)
T KOG1915|consen 91 RARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME 169 (677)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc
Confidence 366777777776655554 466777777888899999999988877433333 33333444445699999999998875
Q ss_pred -CCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHh-CC-CCchhHH
Q 044812 83 -HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI-GF-VVDVILA 159 (547)
Q Consensus 83 -~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~ 159 (547)
+|+..+|++.|..-.+-+.++.|..+|+...- +.|+..+|.--.+.=.+.|+...+.++++..++. |- ..+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 49999999999999999999999999999875 4589999988888888999999999999987764 21 1123344
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC----C-ChhhHHHHHHHHHcCCCchhHHHHHHHHhh-----cCC---CChhhHHH
Q 044812 160 NSLMSMYVKCGKFSECLNLFDEMPQ----R-NVGSWNVRISGHASSGDFSLVVRSRRVFDQ-----MKR---RNVYAWTA 226 (547)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~a~~~~~~-----~~~---~~~~~~~~ 226 (547)
.+....-.++..++.|.-+|+-..+ . ....|..+..---+-|+....+++.--=.+ +.. -|-.+|-.
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 4444444566778888887765443 1 122344444444445555443333322222 222 25567777
Q ss_pred HHHHHHHCCCHHHHHHHHHHchhcCCCCCChH-------HHHhHHHHh---hccCCchhHHHHHHHHHHcCCCCchhHHH
Q 044812 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-------SLVSVLPTC---SSLIGLSGGKQIHGFAIRKELNHDVSLCN 296 (547)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (547)
.+..-...|+.+...++|++. -.+++|-.. .|.-+=-+| ....+.+.+.++++...+ -++....|+.
T Consensus 328 ylrL~e~~g~~~~Ire~yErA--Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFa 404 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERA--IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFA 404 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHH--HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHH
Confidence 777778889999999999998 344666321 222222222 357788999999999888 3466666666
Q ss_pred HHHHH----HHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 297 ALIDM----YSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 297 ~l~~~----~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.+=-+ ..++.++..|.+++-. +|..|-..+|...|..-.+.++++.+..++++.++.+ +-|..++......-..
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHH
Confidence 54333 3467899999999965 7878999999999999999999999999999999964 2367788877777788
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC----
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASV-----MHG---- 441 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~~---- 441 (547)
.|+.+.|..+|+-.+...........|.+.|+.-...|.++.|..+++++ ...+...+|-++..--. +.+
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~ 563 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLA 563 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchh
Confidence 89999999999999876444445667777777778899999999999987 33455557766655333 333
Q ss_pred -------CHHHHHHHHHHHHhhC--CCCCch----HHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 442 -------NSEMQDLAYKSLIQLE--PENPSN----YVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 442 -------~~~~a~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
....|..+|+++...- ..+..- .....+.-...|...+...+-+.|
T Consensus 564 ~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 564 ELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 5678899999887642 111222 223333334456555555555555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-10 Score=106.48 Aligned_cols=442 Identities=12% Similarity=0.038 Sum_probs=293.7
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhcc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 044812 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEALELFSN 111 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 111 (547)
.++..|.-+-+.+-..+ .||..---+.+++.-.|++.+|..+... +.+.|..+......++.+..+|++|..++..
T Consensus 30 ~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred HhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666665555 4555555567778888888888877754 4457888888888899999999999999882
Q ss_pred ----hhhC---------CCCCCcch----HHHH-------HHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044812 112 ----MYYS---------NVSPDDFT----LATI-------SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167 (547)
Q Consensus 112 ----m~~~---------~~~p~~~~----~~~l-------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 167 (547)
+..- -+.+|..- -+.- ...|....++++|...+.+.+.. |...+..+...-.
T Consensus 108 ~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 108 GHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVS 183 (611)
T ss_pred cchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHH
Confidence 2110 01111111 1111 12334455677777777766544 3333333222111
Q ss_pred hc-CChHHHHHHhccCC-----CCChhhHHHHHHHH-HcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHH
Q 044812 168 KC-GKFSECLNLFDEMP-----QRNVGSWNVRISGH-ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240 (547)
Q Consensus 168 ~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~-~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (547)
.. --.++-..+|+... ..+......+.... ++..+.+.-....+.-..-...+.........-+...+++.+.
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c 263 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKEC 263 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHH
Confidence 10 01112233333211 11111111111111 0111100000000000000023555666677888899999999
Q ss_pred HHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 044812 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS- 319 (547)
Q Consensus 241 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 319 (547)
.++.+...... ++....+..-|.++...|+...-..+-..+++.- |....+|-++.-.|.-.|+..+|.+.|.+..
T Consensus 264 ~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 264 LKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 99999984554 4444455556668888888887777777777764 6677889999999999999999999998732
Q ss_pred CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhH
Q 044812 320 FNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEI 397 (547)
Q Consensus 320 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 397 (547)
+.|. ...|-.+..+|+-.|..++|+..+...-+. ++-....+-.+..-|.+.++.+.|.++|.+.. ++-| |+..
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv 416 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLV 416 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchh
Confidence 2333 457999999999999999999999887664 11122334445556888999999999999887 5555 7788
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTMP--------VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
.+-+.-.....+.+.+|..+|+..- ..+ -.++++.|+.+|.+.+.+++|+..+++++.+.|.++.++..++
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 8888777788899999999998651 112 4567999999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 044812 469 NLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~ 488 (547)
-+|.-.|+++.|++.|++..
T Consensus 497 ~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999854
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-09 Score=103.41 Aligned_cols=436 Identities=11% Similarity=0.082 Sum_probs=306.9
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 044812 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 116 (547)
.+|++..+++ ++.++..|-. .....+.++|+.++....+ | +...| -++++..-++.|..+++...+.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-
Confidence 5666666666 2333444433 3334566668877777655 2 33333 4566777889999999999875
Q ss_pred CCCCcchHHHHHHHHccCCCcHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC------CC
Q 044812 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLS----IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ------RN 186 (547)
Q Consensus 117 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~ 186 (547)
++-+...|.+....=...|+.+...++.... ...|+..+..-|-.=...+-+.|..-.+..+...... .-
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 6668888888888888889988888887654 4457777777777777777777777777666665543 12
Q ss_pred hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHH
Q 044812 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266 (547)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 266 (547)
..+|..-...|.+.+-++-+...+...-+.-..+...|...+..--..|..++...+|++. ... ++-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka-v~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA-VEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH-HHh-CCcchhHHHHHHHH
Confidence 3367777777777777777433333333333456667777776666778888888888877 332 34445556666666
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHhcCChHHHHH
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 345 (547)
.-..|+...|..++..+.+.. +.+..+|-.-+.......++++|..+|.+ ....|+...|.--+...-..++.++|.+
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 777888888888888888876 44777888888888888889999888876 2335666666666666666788888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--C
Q 044812 346 LYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--P 422 (547)
Q Consensus 346 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 422 (547)
++++.++. -|+ ...|..+.+.+.+.++++.|.+.|..-.+ ..+-.+..|-.|...-.+.|++-.|..++++. .
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 88888775 455 45677777778888888888888776553 22335667777778778888888888888877 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------------------------CchHHHHHHHHH
Q 044812 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------------------------------PSNYVSLSNLYA 472 (547)
Q Consensus 423 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~ 472 (547)
...+...|...++.-.+.|+.+.|..++.++++.-|.+ +......+..+.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 33467788888888888898888888888877765543 445566667777
Q ss_pred cCCCHHHHHHHHHHHHhCCC
Q 044812 473 SSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~ 492 (547)
...+++.|.+.|.+....+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 77788888888887766553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-12 Score=121.26 Aligned_cols=288 Identities=9% Similarity=0.015 Sum_probs=193.0
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcch-HHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCChHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSEC 175 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~A 175 (547)
.|+++.|.+.+....+.. +++.. |.....+....|+++.+..++.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777777766655432 12222 222344446777777777777777653 33432222 335567777777777
Q ss_pred HHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC
Q 044812 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255 (547)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p 255 (547)
...++++.+.+ +.+...+..+...|.+.|++++|.+++..+ .+.+..+
T Consensus 173 l~~l~~~~~~~-------------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l-~k~~~~~ 220 (398)
T PRK10747 173 RHGVDKLLEVA-------------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSM-AKAHVGD 220 (398)
T ss_pred HHHHHHHHhcC-------------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHcCCCC
Confidence 77776665433 246677778888888889999999888888 5544332
Q ss_pred ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHH
Q 044812 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSG 333 (547)
Q Consensus 256 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~ 333 (547)
+.. ...+ ...+|..++.......+.+...++++..+ .+.++.....+...
T Consensus 221 ~~~-~~~l---------------------------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 221 EEH-RAML---------------------------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHH-HHHH---------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 211 1100 00122223333333445566666666653 23466778888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (547)
+...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+.+ +-|...+..+...+.+.|++++
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999888874 4454322 2334445688999999999887653 4466778888999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 414 ALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 414 A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
|.+.|++. ...|+...+..+..++.+.|+.++|.+++++.+.+
T Consensus 347 A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999987 66799998888999999999999999999988765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-11 Score=118.42 Aligned_cols=255 Identities=9% Similarity=0.083 Sum_probs=193.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHH--hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV--SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (547)
|-....+..+.|+++.|.+.+.++ .+ ..|+..... .....+...|+++.|...++.+.+.. +-+......+...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A-~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~ 196 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERA-AE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 434455668999999999999988 44 455554333 33567888999999999999998877 5677888899999
Q ss_pred HHhcCCHHHHHHHHhcCCC--CCChh--------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 302 YSKCGSLDCARRVFEDSSF--NKDAI--------TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~~~~--~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
|.+.|++++|.+++..+.. ..+.. .|..++.......+.+...++|+.+-+. .+.+......+...+..
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHH
Confidence 9999999999988876420 11121 2333344444455566667777766443 34577888899999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|+.++|..++++..+. .|+.... ++.+....++.+++++.+++. ...|+ ...+..+...|.+.+++++|.+.
T Consensus 276 ~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred CCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988764 4555332 334444569999999999887 44564 55788999999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
|+++.+..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 351 le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 351 FRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999864 5678999999999999999999997643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-12 Score=122.57 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=209.4
Q ss_pred HHHHHHhhcCC--CC-hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCCchhHHHHHHHH
Q 044812 208 RSRRVFDQMKR--RN-VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFA 283 (547)
Q Consensus 208 ~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 283 (547)
+|...|..++. +| ......+..+|...+++++|.++|+.+........ +..+|...+.-+-+ +-+..++.+-
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~ 412 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQD 412 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHH
Confidence 35555655432 23 34445677899999999999999998844333333 34566666654422 1222222222
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHH
Q 044812 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DII 360 (547)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ 360 (547)
.-.-.+..+.+|.++.++|.-+++.+.|++.|++ ..+.| ...+|+.+..-+.....+|.|...|+..+.. .| +..
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYn 490 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYN 490 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhH
Confidence 2222266788999999999999999999999987 44555 6678888888889999999999999988653 33 244
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
.|..+...|.+.++++.|+-.|+++. .+.| +......+...+.+.|+.++|+++++++ ...| |+..--.-+..+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 56677888999999999999999987 4456 6777778888999999999999999987 3334 455555566777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...+++++|+..++++.+.-|++...|..++..|.+.|+.+.|..-|.-+.+..
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 889999999999999999999999999999999999999999999888776544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-11 Score=117.53 Aligned_cols=430 Identities=13% Similarity=0.071 Sum_probs=271.1
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 044812 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK----DVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116 (547)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 116 (547)
.++..+...|+.|+-.+|..++..||..|+.+.|- +|..|.-. +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 57788899999999999999999999999999999 88888642 4556778888777777777665
Q ss_pred CCCCcchHHHHHHHHccCCCcHHHHHHHHHHHH-------hCC--------------CCchhHHHHHHHHHHhcCChHHH
Q 044812 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK-------IGF--------------VVDVILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 117 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~g~--------------~~~~~~~~~l~~~~~~~g~~~~A 175 (547)
.|.+.||..|..+|...||+..-..+-+.+.. .|+ +.....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 57888899999999888887652222221211 121 10111123345555667888888
Q ss_pred HHHhccCCCCChh-hHHHHHHHHHcCC-CchhHHHHHHHHhhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC
Q 044812 176 LNLFDEMPQRNVG-SWNVRISGHASSG-DFSLVVRSRRVFDQMKR-RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252 (547)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~li~~~~~~g-~~~~a~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 252 (547)
++++..++..... +...+++-+.... .+++ .........+ ++..+|..++.+-...|+.+.|..++.+| ++.|
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvek---Ll~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEK---LLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHH---HHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcC
Confidence 8888777642111 1111233332222 2233 4444444444 89999999999999999999999999999 8999
Q ss_pred CCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH--------------------
Q 044812 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR-------------------- 312 (547)
Q Consensus 253 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-------------------- 312 (547)
++.+.+-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+.+.|....+.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 99999988888766 8888899999999999999999988876665555533322111
Q ss_pred ----HHHhc---------------CCCCCChhhHHHHHHHHHhcCChHHHHHH--------------------------H
Q 044812 313 ----RVFED---------------SSFNKDAITWSSIVSGYGLHGKGHEAVLL--------------------------Y 347 (547)
Q Consensus 313 ----~~~~~---------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~--------------------------~ 347 (547)
+.++. .++......|...+... ..|+-+...++ |
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11110 01111112222222111 12222222222 2
Q ss_pred HHHHHc----------C-------------------CCCCH----------------------------HHHHHHHHHHh
Q 044812 348 NKMVCL----------G-------------------SKPDI----------------------------ITIVGVLSACG 370 (547)
Q Consensus 348 ~~m~~~----------g-------------------~~p~~----------------------------~~~~~l~~~~~ 370 (547)
.+.... | ..||. ..-+.++..|+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 111110 0 01111 00112222222
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-----VEPSPSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~ 445 (547)
+.-+..+++..-+..... - -...|..|++.+......+.|..+.++.. +.-|..-+..+...+.+.+....
T Consensus 471 se~n~lK~l~~~ekye~~-l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 222222332222222111 1 12567788888888888999999888873 33456667778888889999999
Q ss_pred HHHHHHHHHhh---CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 446 QDLAYKSLIQL---EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 446 a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
+..+++++.+. .|....++..+.+.....|+.+.-.++.+-+...|+.-
T Consensus 547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99999888764 24445567777788888899999999888888888765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.6e-11 Score=106.79 Aligned_cols=378 Identities=12% Similarity=0.126 Sum_probs=242.9
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH--HHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL--ATISK 129 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~ 129 (547)
.-|+..+-.....+.+.|....|+..|......-+..|.+-+....-..+.+.+..+...+ ..|..-. -.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-----PSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-----cccchHHHHHHHHH
Confidence 3444444444445566677777777777665533444444443332223333332222111 1121111 12445
Q ss_pred HHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCh------hhHHHHHHHHHcCCCc
Q 044812 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV------GSWNVRISGHASSGDF 203 (547)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 203 (547)
++......+++.+-.+.....|++.+...-+....+.-...|+|+|+.+|+++.+.|+ .+|+.++-+ ++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 6666678888888888888888887777777777777788999999999999987544 355544433 22222
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHH
Q 044812 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGF 282 (547)
Q Consensus 204 ~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 282 (547)
..+--|..++ .+.+--+.|+..+.+-|.-.++.++|...|++. .+ +.|. ...|+.+.+-|....+...|..-++.
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA-Lk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRA-LK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHH-Hh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2211122222 223345567788888888889999999999887 44 3443 45677777888888888888888888
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044812 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 360 (547)
+++.+ +.|-..|..|..+|.-.+-..-|+-.|++ ..++ .|...|.+|..+|.+.++.++|...|++....|-. +..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 88876 66777888888888888888888888876 2233 46678888888888888888888888888876533 567
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhc---C-CCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTY---R-IKP-TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 435 (547)
.+..|...+.+.++..+|...|.+..+.. | +.| ......-|..-+.+.+++++|....... .
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~-------------~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV-------------L 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH-------------h
Confidence 78888888888888888888887766532 2 122 2222233455566667776665443332 1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
. -....++|..+++++.+..
T Consensus 535 ~--~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 535 K--GETECEEAKALLREIRKIQ 554 (559)
T ss_pred c--CCchHHHHHHHHHHHHHhc
Confidence 1 1334677777777776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=123.98 Aligned_cols=280 Identities=14% Similarity=0.178 Sum_probs=187.8
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC------ChhhHHHHHHHHHcCCCchhHHHH
Q 044812 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR------NVGSWNVRISGHASSGDFSLVVRS 209 (547)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~a 209 (547)
+..+|...|...-+ .+.-+..+...+.++|...+++++|.++|+.+.+. +...|.+.+-.+-+.-...- .
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~---L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY---L 409 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH---H
Confidence 45677777777333 23444566777888888888888888888887652 44455554443322211111 1
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC
Q 044812 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289 (547)
Q Consensus 210 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 289 (547)
-+-+-.+.+..+.+|.++.++|.-+++.+.|++.|++. .. +.|
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RA-iQ--ldp---------------------------------- 452 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRA-IQ--LDP---------------------------------- 452 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHh-hc--cCC----------------------------------
Confidence 11112222345667777777777777777777777766 22 222
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFED-SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVL 366 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~ 366 (547)
-...+|+.+.+-+.....+|.|...|+. +++. .+...|.-+.-.|.+.++++.|.-.|++..+- .| +......+.
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g 530 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIG 530 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhh
Confidence 2455666666667777778888888876 2322 23345666777888899999999888888874 45 456666677
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNS 443 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 443 (547)
..+.+.|+.++|+++++++..- .| ++..--..+..+...+++++|+..++++ ...|+ ...+..++..|.+.|+.
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHL---DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhc---CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 7788889999999999988743 33 4433334566677789999999999988 34565 45788888999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 044812 444 EMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~ 461 (547)
+.|+..|.-+.+++|.-.
T Consensus 608 ~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHhhHHHhcCCCccc
Confidence 999999999999987643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-14 Score=128.40 Aligned_cols=258 Identities=17% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCC-CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044812 93 INGYVKNHGHNEALELFSNMYYSNVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171 (547)
Q Consensus 93 l~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 171 (547)
...+.+.|++++|+++++.......+| |...|..+...+...++++.|...++.+...+. -+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 455556667777777765443332122 333334444555566667777777776666542 244555555555 56677
Q ss_pred hHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC
Q 044812 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251 (547)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 251 (547)
+++|..+++..-+.+ ++...+..++..+...++++++.++++......
T Consensus 93 ~~~A~~~~~~~~~~~--------------------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--------------------------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T
T ss_pred ccccccccccccccc--------------------------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 777766665543221 233445556666667777777777777663222
Q ss_pred CCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHH
Q 044812 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSS 329 (547)
Q Consensus 252 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 329 (547)
..+++...|..+...+.+.|+.++|...+++..+.. |.+..+.+.++..+...|+.+++.++++... .+.|...+..
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA 219 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 234455555556666666666666666666666654 3345566666666666676666555554321 0344455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+..+|...|+.++|+.+|++..+.. +.|......+..++...|+.++|.++.+++.
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 6677777777777777777766642 2256666666677777777777776666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-10 Score=100.14 Aligned_cols=428 Identities=11% Similarity=0.097 Sum_probs=306.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 128 (547)
..+...|-...+.--..+++..|..+|+.... .+...|-..+..-.++.....|..+++.....=...|. .|.-.+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 45667777777777778888889998888765 56677777788888888888888888887764222222 233333
Q ss_pred HHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC--CCChhhHHHHHHHHHcCCCchhH
Q 044812 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP--QRNVGSWNVRISGHASSGDFSLV 206 (547)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a 206 (547)
..=...|++..|.++|+.-.+ ..|+...|++.|+.-.+-..++.|..++++.. .|++.+|--...--.+.|+...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~- 225 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL- 225 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH-
Confidence 344556888888888887765 57888889888888888888889988888764 5788888777777778888777
Q ss_pred HHHHHHHhhcCC------CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC--hHHHHhHHHHhhccCCchhHHH
Q 044812 207 VRSRRVFDQMKR------RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN--KVSLVSVLPTCSSLIGLSGGKQ 278 (547)
Q Consensus 207 ~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~ 278 (547)
+..++....+ .+...+.+....=.++..++.|.-+|+-. ... ++-+ ...|......=-+-|+......
T Consensus 226 --aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA-ld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 226 --ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYA-LDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 4444444332 13345666666666778889999988876 332 2222 3445544444444555444333
Q ss_pred H--------HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc--CCCCCChh--hHHHHHHH--------HHhcC
Q 044812 279 I--------HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED--SSFNKDAI--TWSSIVSG--------YGLHG 338 (547)
Q Consensus 279 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~--~~~~li~~--------~~~~~ 338 (547)
. ++.+++.+ +.|-.+|--.++.-...|+.+...++|++ .+++|-.. .|...|-. -....
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 34444444 56777788888888889999999999987 34344211 23222221 13467
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSA----CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
+++.+.++|+..++. ++-...||.-+--. -.++.++..|.+++...+ |.-|...++...|..-.+.+.++.+
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 889999999999884 34345666544333 356788999999999887 8899999999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 415 LDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 415 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
..++++. ...| +-.+|......-...|+.+.|..+|+-+++.... ....|...+..-...|.++.|..+++++.+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999987 5556 5568988888888999999999999998875311 1336778888888999999999999999876
Q ss_pred CC
Q 044812 491 GL 492 (547)
Q Consensus 491 ~~ 492 (547)
.-
T Consensus 537 t~ 538 (677)
T KOG1915|consen 537 TQ 538 (677)
T ss_pred cc
Confidence 53
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-11 Score=114.14 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=78.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT--I-VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
.+...+..+...+...|+.++|..++++..+. .||... + ..........++.+.+.+.++...+...-.|+....
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 35666777777777777778887777777775 333221 1 111111233456666666666665542111211445
Q ss_pred HHHHHHhHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 399 ACVVDMLGRAGQLDRALDFIKT--M-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
.++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666677777777777763 2 4456666666667777777777777777766544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-11 Score=114.75 Aligned_cols=259 Identities=10% Similarity=0.013 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH--HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
..+-....++.+.|+++.|.+.+.+. .+. .|+.. ........+...|+++.|...++.+.+.. |-+..+...+.
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a-~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~ 194 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEA-AEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAE 194 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34455567788889999999999887 442 34432 33334777788899999999999998886 55667888899
Q ss_pred HHHHhcCCHHHHHHHHhcCC-C-CCChhhHHH----HHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHh
Q 044812 300 DMYSKCGSLDCARRVFEDSS-F-NKDAITWSS----IVSGYGLHGKGHEAVLLYNKMVCLGS---KPDIITIVGVLSACG 370 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~l~~~~~ 370 (547)
..+...|+++.|.+.++... . ..+...+.. ...+....+..+++.+.+..+.+... +.+...+..+...+.
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 99999999999999887632 0 223332221 11122333333333445555554321 137788888999999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhH---HHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHHcCCH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEI---CACVVDMLGRAGQLDRALDFIKTM-PVEPS-P--SIWGALVSASVMHGNS 443 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~--~~~~~l~~~~~~~~~~ 443 (547)
..|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++. ...|+ + ....++...+.+.|++
T Consensus 275 ~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH
Confidence 999999999999999875 343331 111222223457888888888776 33443 3 5677899999999999
Q ss_pred HHHHHHHHH--HHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 444 EMQDLAYKS--LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 444 ~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++|.+.|++ ..+..|+ +..+..++..+.+.|+.++|.+++++-.
T Consensus 352 ~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999995 5556674 5567899999999999999999999854
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-10 Score=100.82 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=174.2
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
..+.-.|+...|..-|+.. ......++ ..|..+..+|....+.++..+.|+...+.+ +.++.+|..-..++.-.+++
T Consensus 334 tF~fL~g~~~~a~~d~~~~-I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAA-IKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhcCCchhhhhhHHHH-HhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 3455678899999999988 44322222 237778888999999999999999999887 56777888888888889999
Q ss_pred HHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 309 DCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 309 ~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+.|..-|++. .+.| +...|-.+.-+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..+
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999873 3334 4556777777778899999999999999887 44457899999999999999999999999987
Q ss_pred HhcCCCCc---------hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 387 NTYRIKPT---------TEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 387 ~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
+- .|+ +.+.-.++..- -.+++..|.+++++. .+.|- ...|..|...-.+.|+.++|+++|++...
T Consensus 490 ~L---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 EL---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hh---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 53 333 22222333322 448999999999987 56664 45899999999999999999999999887
Q ss_pred hC
Q 044812 456 LE 457 (547)
Q Consensus 456 ~~ 457 (547)
+-
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 64
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-10 Score=99.66 Aligned_cols=287 Identities=11% Similarity=0.068 Sum_probs=188.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC--C--hhhHHHHHHHHHcCCCchhHHHH
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR--N--VGSWNVRISGHASSGDFSLVVRS 209 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~a 209 (547)
.|+|..|++....-.+.+.. ....|..-.++--..|+.+.+-..+.+..++ | ....-.........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555555555554444422 1222333334444455555555555554432 1 11222333344444544444444
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC
Q 044812 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289 (547)
Q Consensus 210 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 289 (547)
..-+.+|...++........+|.+.|++.....++..+ .+.+.-.++..- .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L-~ka~~l~~~e~~----------------------------~ 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL-RKAGLLSDEEAA----------------------------R 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHccCCChHHHH----------------------------H
Confidence 44455555667777888888888888888888888888 666655443211 0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
....+|..+++-....+..+.-...+++.+ .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+. . ..-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHH
Confidence 122345566666555566666566666643 2345666677888889999999999999999988777762 2 223
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 446 (547)
.+.+.++...-++..++-.+.++.. +..+.+|...|.+.+.+.+|...|+.. +..|+..+|+.+..++.+.|++.+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 4667778777777777777665444 477888899999999999999999876 7789999999999999999999999
Q ss_pred HHHHHHHHhh
Q 044812 447 DLAYKSLIQL 456 (547)
Q Consensus 447 ~~~~~~~~~~ 456 (547)
.++.++.+..
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 9999888754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-10 Score=103.65 Aligned_cols=199 Identities=11% Similarity=0.105 Sum_probs=162.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3556777888899999999999998762 2233 45677888889999999999999999988764 3356677788888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 446 (547)
+...|++++|.+.+++.............+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764222234566777888899999999999999887 3334 456788899999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998887543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-10 Score=98.18 Aligned_cols=261 Identities=12% Similarity=0.094 Sum_probs=197.8
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
.....|..-+.+..+.|+.+.+-.++.+. .+..-.++..............|+++.|..-+..+.+.+ +-.+.+....
T Consensus 116 ~p~l~~l~aA~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa 193 (400)
T COG3071 116 QPVLAYLLAAEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLA 193 (400)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHH
Confidence 34556666778888899999999999888 554345555566667777888999999999999888877 5567788889
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 299 IDMYSKCGSLDCARRVFEDSS---FNKD-------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~---~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
.++|.+.|++.....++.++. .-.+ ..+|+.+++-....+..+.-...|+..-.. .+-++..-..++.-
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~ 272 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHH
Confidence 999999999999999987643 1112 235777777666666677767777776544 44556677788888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT----MPVEPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~p~~~~~~~l~~~~~~~~~~~ 444 (547)
+...|+.++|.++..+..+. +..|+... + -...+-++.+.-.+..++ .+. ++..+.+|+..|.+.+.+.
T Consensus 273 li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKR-QWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHcCChHHHHHHHHHHHHh-ccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHH
Confidence 99999999999999998877 66666222 2 233455555554444443 343 3478899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|...|+.+++..| +...|..++.++.+.|+..+|.+..++....
T Consensus 346 kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 346 KASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999988888 5779999999999999999999999887643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-10 Score=95.76 Aligned_cols=265 Identities=10% Similarity=0.072 Sum_probs=144.3
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD---VILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A 175 (547)
++++++|+++|-+|.+... -+..+-.+|.+.+.+.|..+.|+++++.+.+..--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4678888888888876321 1333445577788888888888888887765321111 22345566777888888888
Q ss_pred HHHhccCCCCChh---hHHHHHHHHHcCCCchhHHHHHHHHhhcCC-C----ChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 176 LNLFDEMPQRNVG---SWNVRISGHASSGDFSLVVRSRRVFDQMKR-R----NVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 176 ~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~a~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
+.+|..+.+.+.. ....|+..|-...++++|.++-+-+..+.. + -...|..+...+....+++.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887763322 344455555555555554443333333322 1 1134555666666666666666666665
Q ss_pred hhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChh
Q 044812 248 QLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAI 325 (547)
Q Consensus 248 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~ 325 (547)
.+. .|+ ...-..+.+.....|+++.|.+.++...+.+...-..+...|..+|...|+.++....+.+ +...++..
T Consensus 207 -lqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 207 -LQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred -Hhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 221 121 1222233344555566666666666666555444455555566666666666666555554 22233333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 369 (547)
.-+.+...-....-.+.|..++.+-... +|+...+..++...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 3333333333333344444444443332 45555555555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-10 Score=95.43 Aligned_cols=295 Identities=13% Similarity=0.113 Sum_probs=207.6
Q ss_pred cCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHch
Q 044812 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248 (547)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 248 (547)
..+.++|.+.|-+|.+.|.. ...+.-+|.+.|-+.|..|.|+++-+.+.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-------------------------------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~ 96 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-------------------------------TFEAHLTLGNLFRSRGEVDRAIRIHQTLL 96 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-------------------------------hhHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 46667777777777654432 23345567788888888888888888773
Q ss_pred hcCCCCCCh--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCC
Q 044812 249 LKDRIEPNK--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---SFNKD 323 (547)
Q Consensus 249 ~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ 323 (547)
...+..-+. ...-.+..-|...|-++.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++ +-++.
T Consensus 97 ~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 97 ESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 222222221 223345566777888888888888888755 334456777899999999999999987753 21222
Q ss_pred h----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 324 A----ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 324 ~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
. ..|.-+...+....+.++|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+. +..--..+..
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~ 253 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLE 253 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHH
Confidence 1 13555666666788999999999999886322 2333345667788999999999999999876 4444567888
Q ss_pred HHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH---cCC
Q 044812 400 CVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA---SSR 475 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g 475 (547)
.|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...| +...+..|+..-. ..|
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhcccccc
Confidence 9999999999999999999886 4455555555555555555667777777777777777 4556666666554 346
Q ss_pred CHHHHHHHHHHHHhCCCccCCcc
Q 044812 476 RWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 476 ~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
++.+....+++|....++.+|..
T Consensus 333 ~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred chhhhHHHHHHHHHHHHhhcCCc
Confidence 78999999999988777777754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-08 Score=95.02 Aligned_cols=433 Identities=11% Similarity=0.053 Sum_probs=249.8
Q ss_pred ccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHH
Q 044812 33 HRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELF 109 (547)
Q Consensus 33 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~ 109 (547)
.+.+.....+.+.+++ +.+-.+.+.....-.+...|+-++|....+...+ .+.++|+.+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4555555666666666 3343444444444445556777777777666544 34567777766666667777777777
Q ss_pred HHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhh
Q 044812 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189 (547)
Q Consensus 110 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 189 (547)
......+. -|...+.-+.-.-+..|+++..........+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 99 ~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-- 174 (700)
T KOG1156|consen 99 RNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-- 174 (700)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 77766432 133445555445556666666666666665543 23444566666666667777777766665432110
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHH------HHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhH
Q 044812 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA------MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~------li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 263 (547)
. .++...|.- -.....+.|..+.|++.+..- +. .+.-....-..-
T Consensus 175 -------------------------~--~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~-e~-~i~Dkla~~e~k 225 (700)
T KOG1156|consen 175 -------------------------T--SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN-EK-QIVDKLAFEETK 225 (700)
T ss_pred -------------------------c--CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh-hh-HHHHHHHHhhhH
Confidence 0 122222221 123455677777777777654 21 122222222333
Q ss_pred HHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcCCCC-CChhhHHHHHHHHHhcCC-h
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR-RVFEDSSFN-KDAITWSSIVSGYGLHGK-G 340 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~-~~~~~~~~li~~~~~~~~-~ 340 (547)
...+.+.+++++|..++..+...+ +.+...|-.+..++.+..+.-++. .+|....-. |-...-..+--......+ .
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 455677788888888888877764 333334444555554333333333 566542211 111110111111111122 3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH---HHHHHHhcC----------CCCchhHH--HHHHHHh
Q 044812 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI---YNSVINTYR----------IKPTTEIC--ACVVDML 405 (547)
Q Consensus 341 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~~~~----------~~~~~~~~--~~l~~~~ 405 (547)
+..-.++..+.+.|+++-...+.+|. -.....+-..++ +.......| -+|....| -.++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 34456677788888776444433333 222211111111 111111101 14454444 4567888
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
-+.|+++.|..+++.. ...|+.+ .|..-.+.+...|++++|...++++.+++..|...-..-+.-..++++.++|.++
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHH
Confidence 8999999999999987 6678765 6777778899999999999999999999977766655788889999999999999
Q ss_pred HHHHHhCCCc-----cCCccceEee
Q 044812 484 RTMMKDRGLK-----KSPGCSWISI 503 (547)
Q Consensus 484 ~~~m~~~~~~-----~~~~~~~~~~ 503 (547)
...+-+.|.. .+..|.|..+
T Consensus 462 ~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 462 LSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHhhhcccchhhhHHHhhhHHHhH
Confidence 9999877752 2235567655
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=111.98 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=133.9
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 044812 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186 (547)
Q Consensus 107 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 186 (547)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556666777777777777777777777777777 7777766666666777777777766666655544 566
Q ss_pred hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC----------------------CChhhHHHHHHHHHHCCCHHHHHHHH
Q 044812 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR----------------------RNVYAWTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~----------------------~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (547)
..+|+.|..+|...||+..-+.+.+.+..+.. .....-...+......|.++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776543333332221110 00011122344445556666666666
Q ss_pred HHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCC
Q 044812 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---SFN 321 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~ 321 (547)
..+.......|-.. +++-+... ..-.+++........-.|+..++..++++-...|+.+.|..++.+| |+.
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 55522222222211 12222221 2222233322222111355666666666666666666666666543 333
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 374 (547)
.+..-|..|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 333333444333 55555556666666666666666666655555555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-08 Score=98.67 Aligned_cols=430 Identities=14% Similarity=0.017 Sum_probs=247.6
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 044812 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119 (547)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 119 (547)
+.++....+.-|+..|..|.-++.+.|++..+-+.|++... .....|+.+-..+...|.-..|+.+++.-....-.|
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 44445555667899999999999999999999999988764 355678888888999999999999998876543334
Q ss_pred -CcchHHHHHHHH-ccCCCcHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcC-----------ChHHHHHHhccC
Q 044812 120 -DDFTLATISKLS-GEIKDLNVGMLIHGLSIKIG--F--VVDVILANSLMSMYVKCG-----------KFSECLNLFDEM 182 (547)
Q Consensus 120 -~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~ 182 (547)
|...+-..-..| .+.+.++++..+-.+++... . ......|..+.-+|...- ...++...+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 334444444444 45577788877777776621 1 122334444444443221 123455555555
Q ss_pred CCCC---hhhHHHHHHHHHcCCCchhHHHHHHHHhhc-CCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH
Q 044812 183 PQRN---VGSWNVRISGHASSGDFSLVVRSRRVFDQM-KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258 (547)
Q Consensus 183 ~~~~---~~~~~~li~~~~~~g~~~~a~~a~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 258 (547)
.+.+ ....-.+.--|+..++++.|.+-.+-+-.+ ...+...|..++-.+...+++.+|+.+.+....+.|. |..
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~ 548 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHV 548 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhh
Confidence 4322 212222222344445555433222222223 3345555555555556666666666665554222221 111
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CC-hhhHHHHHHH
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN----KD-AITWSSIVSG 333 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~li~~ 333 (547)
....-+..-..-++.+++......+... |... ......|+-....++...++.. .+ ..++..+..-
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111122222233444433333332210 0000 0000111112222222222211 11 1122222211
Q ss_pred HHhcC---ChHHHHHHHHHHHHcCCCC--C------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 334 YGLHG---KGHEAVLLYNKMVCLGSKP--D------IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 334 ~~~~~---~~~~a~~~~~~m~~~g~~p--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
....+ ..+.. +...-+.| + ...+......+.+.+..++|...+.+.... .+.....|....
T Consensus 620 ~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G 691 (799)
T KOG4162|consen 620 VASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRG 691 (799)
T ss_pred HHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhh
Confidence 11111 11111 11111222 2 123445556678888899998888777542 234677788778
Q ss_pred HHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 403 DMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDL--AYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
..+...|.+++|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+.+.+|.++.+|..++.++.+.|+.+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 8889999999999999876 56675 4588999999999999888888 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 044812 479 AVAELRTMMKDRG 491 (547)
Q Consensus 479 ~A~~~~~~m~~~~ 491 (547)
.|.+.|....+..
T Consensus 772 ~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 772 QAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.7e-12 Score=80.57 Aligned_cols=50 Identities=32% Similarity=0.477 Sum_probs=46.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-12 Score=81.54 Aligned_cols=50 Identities=36% Similarity=0.557 Sum_probs=43.4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHcc
Q 044812 84 KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 133 (547)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-09 Score=101.22 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=67.3
Q ss_pred chHHHHHHHHccCCCcHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHH
Q 044812 122 FTLATISKLSGEIKDLNVGMLIHGLSIKI-----GF-VVDV-ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194 (547)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 194 (547)
.+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~------------- 266 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE------------- 266 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-------------
Confidence 45555778888888888888888877665 21 1222 2234466677788888888888877
Q ss_pred HHHHcCCCchhHHHHHHHHhhcC----CCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 195 SGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 195 ~~~~~~g~~~~a~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
|+.+++... +.-..+++.|...|.+.|++++|...+++.
T Consensus 267 --------------AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 267 --------------ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred --------------HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 444444332 223457777888888888888888888766
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-09 Score=103.86 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=160.5
Q ss_pred HHhHHHHhhccCCchhHHHHHHHHHHc-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhc--------CC-CCCC
Q 044812 260 LVSVLPTCSSLIGLSGGKQIHGFAIRK-----E-LNHDVS-LCNALIDMYSKCGSLDCARRVFED--------SS-FNKD 323 (547)
Q Consensus 260 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~--------~~-~~~~ 323 (547)
...+...|...|+++.|...+++..+. | ..|... ..+.+...|...+++.+|..+|++ .| ..|.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333444455555555555554444432 1 122222 233577788888999988888875 23 0122
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCC
Q 044812 324 -AITWSSIVSGYGLHGKGHEAVLLYNKMVCL-----GS-KPDI-ITIVGVLSACGRSGLINEGLEIYNSVINTYR--IKP 393 (547)
Q Consensus 324 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~ 393 (547)
..+++.|..+|.+.|++++|...+++..+- |. .|.. .-++.+...|+..+++++|..+++...+.+. +.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 235778888899999999888887776432 22 2222 3456677778999999999999988766543 222
Q ss_pred ----chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 044812 394 ----TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQL--- 456 (547)
Q Consensus 394 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 456 (547)
-..+++.|...|...|++++|.+++++. +..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2467899999999999999999999876 12232 457788999999999999999999988654
Q ss_pred -CCC---CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 457 -EPE---NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 457 -~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+|+ ...+|..|+.+|.+.|++++|.++.+...
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 44578899999999999999999988774
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-08 Score=86.03 Aligned_cols=442 Identities=11% Similarity=-0.028 Sum_probs=237.0
Q ss_pred HHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHH
Q 044812 30 SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEAL 106 (547)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~ 106 (547)
+....++.-|..+++--...+-.-...+-.=+...+.+.|++++|...|..+.. ++...+-.|..++.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 344566677777776555433221112222233455667888888888877653 44555555555555567777877
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 044812 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186 (547)
Q Consensus 107 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 186 (547)
.+-....+ ++-.-..++...-+.++-++-..+.+.+... ..-.-+|.......-++.+|++++.++...+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77665432 2233344555555666666666555544322 2223345555555567888888888877643
Q ss_pred --hhhHHHHH-HHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhH
Q 044812 187 --VGSWNVRI-SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263 (547)
Q Consensus 187 --~~~~~~li-~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 263 (547)
....|.-+ -+|.+..-++-+.+.++++-+-...++..-|..+....+.=.-..|..-.+++ .+.+-+.-+..-..+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l-adN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL-ADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH-HhcccccchhHHHHH
Confidence 33444433 45666666676666666665555555666666665555543333333333333 221111100000000
Q ss_pred HHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC-----
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG----- 338 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~----- 338 (547)
-.-+.--.+-+.|.+++--+.+. - +..--.|+-.|.+.|++.+|..+.++.. +.++.-|-.-.-.++..|
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~-PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD-PTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC-CCChHHHHHHHHHHHHhhhhcCc
Confidence 00111112334555554444332 1 1223345556788888888888888876 444433322222233333
Q ss_pred --ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 339 --KGHEAVLLYNKMVCLGSKPDI-ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 339 --~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
...-|.+.|.-.-+++...|. ..-.++..++.-..++++.+.+++.+.. +=...|...+| +.++++..|.+.+|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHH
Confidence 234455555544444433332 1223344444555677788877777743 23333444443 677888888888888
Q ss_pred HHHHhCC--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCC-chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 416 DFIKTMP--VEPSPSIWG-ALVSASVMHGNSEMQDLAYKSLIQLE-PENP-SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 416 ~~~~~~~--~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
++|-+.. .-.|..+|. .|.++|.+.+.++.|..++-+ .+ |.+. ......++-|.+.+.+=-|.+.|+.+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 8887762 113444554 455677788888777665433 33 3222 23344556677778777777777777655
Q ss_pred CC
Q 044812 491 GL 492 (547)
Q Consensus 491 ~~ 492 (547)
+.
T Consensus 491 DP 492 (557)
T KOG3785|consen 491 DP 492 (557)
T ss_pred CC
Confidence 43
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-07 Score=83.22 Aligned_cols=262 Identities=12% Similarity=0.038 Sum_probs=170.5
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.|+.....+...+...|+.++|+..|++. .. +.|+..+ +....-.+.+.|+.+....+...+.... ..+...|-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~-~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSST-LC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHH-hh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 46667777778888888888888888766 22 3443322 2222333456667776666666665443 122333333
Q ss_pred HHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCc
Q 044812 298 LIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGL 374 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 374 (547)
-+......++++.|+.+-++ +...| +...|-.-...+...+++++|.-.|+..+.. .| +...|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhch
Confidence 44455566778888877765 22222 3334444445677778888888888887764 43 67788888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHH-HHh-HhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVV-DML-GRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAY 450 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~ 450 (547)
+.+|.-.-+...+. ++.+..+...+. ..+ ..-..-++|..++++. .+.|+-. ..+.+...|...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 88887777766553 233455554442 222 2223447788888775 6677643 6666777788888888888888
Q ss_pred HHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++.+...|+ ......|++.+...+.+++|.+.|....+
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888887774 56788888888888888888888876654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.9e-10 Score=95.22 Aligned_cols=228 Identities=13% Similarity=0.060 Sum_probs=183.3
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhH-HHHHHHHHh
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITW-SSIVSGYGL 336 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~li~~~~~ 336 (547)
.-.-+.++|.+.|.+..|.+.++...+. .|-+.||..|-.+|.+..+++.|+.++.+ +..-|..++| .-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3455677888888888888888877766 45566777888899999999999999876 4434555554 446677778
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (547)
.++.++|.++|+...+.. +.+......+...|...++.+.|..+++++..- |+ .+++.|+.+.-+|.-.++++-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 888999999999888752 335666677777788888999999999988765 54 477888888888888889998888
Q ss_pred HHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 417 FIKTM---PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 417 ~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
-|++. .-.|+ ..+|-.+.......||+..|.+.|+-++..++++...++.|+..-.+.|++++|..+++...+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88776 12243 45888899989999999999999999999999999999999999999999999999999877654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-09 Score=93.70 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=115.0
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (547)
...+..+...+...|++++|.+.+++. .. .. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~-l~-----------------------------------~~-p~~~~~~~~la~ 73 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKA-LE-----------------------------------HD-PDDYLAYLALAL 73 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HH-----------------------------------hC-cccHHHHHHHHH
Confidence 345566666666666666666666665 22 21 222334445555
Q ss_pred HHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINE 377 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 377 (547)
.+...|++++|.+.+++. .. +.+...+..+...+...|++++|...+.+.......| ....+..+..++...|++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 555566666666655541 11 2233455555666666666666666666665532222 23445556666677777777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
|...+++..+.. +.+...+..+...+...|++++|...+++. .. ..+...+..+...+...|+.+.|..+.+.+.+
T Consensus 154 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 154 AEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777766431 224556666677777777777777777665 21 23445555666667777777777777766655
Q ss_pred h
Q 044812 456 L 456 (547)
Q Consensus 456 ~ 456 (547)
.
T Consensus 232 ~ 232 (234)
T TIGR02521 232 L 232 (234)
T ss_pred h
Confidence 4
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-09 Score=105.71 Aligned_cols=261 Identities=13% Similarity=0.044 Sum_probs=181.6
Q ss_pred ChhhHHHHHHHHHH-----CCCHHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhh---------ccCCchhHHHHHHHHH
Q 044812 220 NVYAWTAMINGYVQ-----NGDLDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCS---------SLIGLSGGKQIHGFAI 284 (547)
Q Consensus 220 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 284 (547)
+...|...+.+-.. .+++++|+.+|++. .. ..|+. ..+..+..++. ..+++++|...++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~A-l~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQC-VN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHH-Hh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555555554321 23467899999887 43 44543 34444443332 2345789999999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HH
Q 044812 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI-IT 361 (547)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~ 361 (547)
+.+ +.+...+..+..++...|++++|...|++ +...|+ ...+..+...+...|++++|...+++..+. .|+. ..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 876 55677888888999999999999999987 333454 567888889999999999999999999886 4442 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASV 438 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~ 438 (547)
+..++..+...|++++|...++++.+. . .| ++..+..+..++...|++++|...++++ +..|+.. ..+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566689999999999988754 2 34 4556777888899999999999999987 4455544 4455555667
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..| +.|...++.+.+..-..+.....+...|.-.|+-+.+... +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4788888887765322222223366666677777777666 8877665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-08 Score=94.61 Aligned_cols=282 Identities=12% Similarity=0.073 Sum_probs=172.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Q 044812 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~ 234 (547)
+......-..-+...+++.+..++++...+.|+. +...+..-|.++...
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-------------------------------h~~~~~~~ia~l~el 291 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-------------------------------HLPCLPLHIACLYEL 291 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-------------------------------CcchHHHHHHHHHHh
Confidence 3444444445555666666666666666554332 223333334444455
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
|+..+-..+=.++ .+ ..+-...+|-++..-|...|..++|+++|.+....+ +.-...|-.+.+.|.-.|.-+.|+..
T Consensus 292 ~~~n~Lf~lsh~L-V~-~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 292 GKSNKLFLLSHKL-VD-LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred cccchHHHHHHHH-HH-hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHH
Confidence 5544444444444 11 123334455555555555556666666655554433 11233566777777778888877777
Q ss_pred HhcCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-C
Q 044812 315 FEDSS-F-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTY-R 390 (547)
Q Consensus 315 ~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 390 (547)
+.... . +.....+.-+.--|.+.++.+.|.++|..... +.| |+...+-+.-.....+.+.+|..+|+.....- .
T Consensus 369 Y~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 65410 0 11111122234456778888888888887766 445 45556666555566778888888888765210 0
Q ss_pred C---C-CchhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 391 I---K-PTTEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 391 ~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
+ . ....+++.|..+|.+.+.+++|+..+++. . .+.+..++.+++..|...|+++.|.+.|.+++.+.|++..+-
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 0 1 13456788888999999999999999876 2 334777888899999999999999999999999999886666
Q ss_pred HHHHHHHH
Q 044812 465 VSLSNLYA 472 (547)
Q Consensus 465 ~~l~~~~~ 472 (547)
..|..+..
T Consensus 527 ~lL~~aie 534 (611)
T KOG1173|consen 527 ELLKLAIE 534 (611)
T ss_pred HHHHHHHH
Confidence 66655443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-06 Score=83.19 Aligned_cols=437 Identities=12% Similarity=0.102 Sum_probs=253.3
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHH--HHHHH--HhcCChhH
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS--LINGY--VKNHGHNE 104 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--ll~~~--~~~~~~~~ 104 (547)
.....+++++|.+....++..+ +-+...+.+=+-++.+.+.|++|+.+.+.-.... +++. +=.+| -+.+..++
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHH
Confidence 3444578899999999988887 5567788888888999999999997776654321 1222 23344 46899999
Q ss_pred HHHHHHHhhhCCCCCCc-chHHHHHHHHccCCCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHhccC
Q 044812 105 ALELFSNMYYSNVSPDD-FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 105 A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
|+..++ |..++. .+...-.+.+.+.+++++|..+|+.+.+.+.+. +......++. .+-.-.+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----VAAALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----HHHhhhHH-HHHhc
Confidence 999988 333333 366667788899999999999999998876431 1111111211 11111221 33333
Q ss_pred CCCChhhHHHHH---HHHHcCCCchhHHHHHHHH----hh-cCCCCh----------hhHHHHHHHHHHCCCHHHHHHHH
Q 044812 183 PQRNVGSWNVRI---SGHASSGDFSLVVRSRRVF----DQ-MKRRNV----------YAWTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 183 ~~~~~~~~~~li---~~~~~~g~~~~a~~a~~~~----~~-~~~~~~----------~~~~~li~~~~~~~~~~~A~~~~ 244 (547)
......+|..+- -.+...|++.+|++.++-- .+ +...|. ..---|..++...|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 332233444433 4566788888843333222 11 111111 11223556778899999999999
Q ss_pred HHchhcCCCCCChHH----HHhHHHHhhccCCch-hHHHHHHHHHHc-----------CCCCchhHHHHHHHHHHhcCCH
Q 044812 245 LEMQLKDRIEPNKVS----LVSVLPTCSSLIGLS-GGKQIHGFAIRK-----------ELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
... .+. .++|... .|.++..-....-++ .+...++..... ...-....-+.++..| .+..
T Consensus 248 ~~~-i~~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 248 VDI-IKR-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHH-HHh-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence 988 443 3444422 223332222111122 111111111110 0000111112223322 3455
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHH-HH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH---
Q 044812 309 DCARRVFEDSSFNKDAITWSSIVSG-YG-LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN--- 383 (547)
Q Consensus 309 ~~A~~~~~~~~~~~~~~~~~~li~~-~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--- 383 (547)
+.+.++....+..-....+.+++.. +. +.....++.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 6666666655422223344444443 32 223467777777777665222224455556667889999999999999
Q ss_pred -----HHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 044812 384 -----SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--------PVEPS-PSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 384 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.+.+- +. .+.+...+...+.+.++-+.|..++.+. ...+. ..++..+...-.+.|+-++|..+
T Consensus 404 ~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44322 33 3445556777788777765555555443 22222 22444444555678999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++++.+.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999876 45566665444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=88.90 Aligned_cols=169 Identities=14% Similarity=0.168 Sum_probs=142.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDM 404 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 404 (547)
...|.-+|.+.|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+.|++.... .| +..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHH
Confidence 555677899999999999999999886 44 4678888888899999999999999988743 45 67888888999
Q ss_pred hHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH
Q 044812 405 LGRAGQLDRALDFIKTMPVEP----SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 480 (547)
+|..|++++|...|++.-..| -..+|..++.+..+.|+.+.|.+.|++.++.+|..+.....+.......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999873333 2458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCccceE
Q 044812 481 AELRTMMKDRGLKKSPGCSWI 501 (547)
Q Consensus 481 ~~~~~~m~~~~~~~~~~~~~~ 501 (547)
...+++....+. ++...-|.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHH
Confidence 999999887766 44444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-06 Score=83.83 Aligned_cols=452 Identities=13% Similarity=0.145 Sum_probs=213.2
Q ss_pred HHHhccCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHH
Q 044812 29 VSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 107 (547)
++...|++..-+..|+..+..- +......|...+......|-++.+.++++.-.+-++..-+-.|..+++.+++++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 3334445555555555544431 233344566666666666777777777777666555556667777777777777777
Q ss_pred HHHHhhhCC------CCCCcchHHHHHHHHccCCCcHH---HHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHH
Q 044812 108 LFSNMYYSN------VSPDDFTLATISKLSGEIKDLNV---GMLIHGLSIKIGFVVD--VILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 108 ~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~ 176 (547)
.+....... .+.+...|.-+-...++..+.-. ...+++.++. .-+| ...|.+|.+.|.+.|+++.|.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 777665321 11223334444333333322211 1122222221 1122 235667777777777777777
Q ss_pred HHhccCCCC--ChhhHHHHHHHHH----------------cCCCchh---HHHHHHHHhhcC---------------CCC
Q 044812 177 NLFDEMPQR--NVGSWNVRISGHA----------------SSGDFSL---VVRSRRVFDQMK---------------RRN 220 (547)
Q Consensus 177 ~~~~~~~~~--~~~~~~~li~~~~----------------~~g~~~~---a~~a~~~~~~~~---------------~~~ 220 (547)
.+|++..+. .+.-++.+.+.|. ..|+.+. .+-....|+.+. ..+
T Consensus 269 Dvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 269 DVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 777664431 1111111111111 1111110 011111111111 112
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC------hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc---
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD--- 291 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 291 (547)
+..|..-+. +..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 349 V~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 349 VEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred HHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 222222221 2345555555556555222 2221 23455566666666666666666666665543322
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--------------------ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNK--------------------DAITWSSIVSGYGLHGKGHEAVLLYNKMV 351 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 351 (547)
..+|..-..+-.+..+++.|+++.++.-..| +...|...++..-..|-++....+|+++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555556666666666665411011 11223333433334445555555555544
Q ss_pred HcCC----------------------------------CCCH-HHHHHHHHHHh---ccCcHHHHHHHHHHHHHhcCCCC
Q 044812 352 CLGS----------------------------------KPDI-ITIVGVLSACG---RSGLINEGLEIYNSVINTYRIKP 393 (547)
Q Consensus 352 ~~g~----------------------------------~p~~-~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~ 393 (547)
+..+ .|+. ..|+..+..+. ...+++.|..+|++..+ |.+|
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp 582 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPP 582 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCH
Confidence 4322 2221 12232222222 12346666777776665 4444
Q ss_pred ch--hHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc--hHH
Q 044812 394 TT--EICACVVDMLGRAGQLDRALDFIKTM--PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS--NYV 465 (547)
Q Consensus 394 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 465 (547)
.. ..|......-.+.|-...|+.++++. .+++. ...|+..++-....=-+.....+|+++++.-|++.. ...
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mcl 662 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHH
Confidence 22 12222222223446666666666665 22332 225555554333332334445566666665544322 233
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Q 044812 466 SLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..+..-.+.|..+.|..++..-.
T Consensus 663 rFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 663 RFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhh
Confidence 45556667788888888877643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-07 Score=90.66 Aligned_cols=429 Identities=13% Similarity=0.086 Sum_probs=243.7
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHHHHHHHH-h----
Q 044812 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLINGYV-K---- 98 (547)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~-~---- 98 (547)
-..++...|++.+|.+.++.-.+. +.-...........+.+.|+.++|..+|..+.+ |+...|-..+..+. -
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 346677778888887777664433 333455666677777778888888888877764 54444444433333 1
Q ss_pred -cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 044812 99 -NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN-VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 99 -~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 176 (547)
..+.+...++|+++...- |.......+.-.+.....+. .+..++..+...|++ .+|+.|-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 124566677777776543 44444444433333333332 444555566666643 34555555555444433333
Q ss_pred HHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCCh--hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV--YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 177 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
+++...... ....+.+.. . . -.....|.. .++..+...|...|++++|++++++. .. ..
T Consensus 164 ~l~~~~~~~-----------l~~~~~~~~---~-~-~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a-I~--ht 224 (517)
T PF12569_consen 164 SLVEEYVNS-----------LESNGSFSN---G-D-DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA-IE--HT 224 (517)
T ss_pred HHHHHHHHh-----------hcccCCCCC---c-c-ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hh--cC
Confidence 333332110 000000000 0 0 000012333 35567788999999999999999988 44 24
Q ss_pred CC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC------hh--
Q 044812 255 PN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD------AI-- 325 (547)
Q Consensus 255 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~-- 325 (547)
|+ ...|..-.+.+-+.|++.+|...++...... .-|..+-+..+..+.+.|++++|.+++.... +++ ..
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~~~~~~L~~m 302 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT-REDVDPLSNLNDM 302 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCCCcccCHHHH
Confidence 54 5678888899999999999999999998876 5577777888899999999999999887543 222 11
Q ss_pred --hH--HHHHHHHHhcCChHHHHHHHHHHHHc-------CC--------CCCHHHHHHHHHHHhccCc-------HHHHH
Q 044812 326 --TW--SSIVSGYGLHGKGHEAVLLYNKMVCL-------GS--------KPDIITIVGVLSACGRSGL-------INEGL 379 (547)
Q Consensus 326 --~~--~~li~~~~~~~~~~~a~~~~~~m~~~-------g~--------~p~~~~~~~l~~~~~~~g~-------~~~a~ 379 (547)
.| .....+|.+.|++..|+.-|....+. .+ +.+..+|..+++..-+... ...|.
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai 382 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAI 382 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 23457899999999988766655432 11 1222334444433221111 23345
Q ss_pred HHHHHHHHhcCCCCch-----------hHHHHHHHHh---HhcCCHHHHHHHHH-----------hC----C--CCCCHH
Q 044812 380 EIYNSVINTYRIKPTT-----------EICACVVDML---GRAGQLDRALDFIK-----------TM----P--VEPSPS 428 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~-----------~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~----~--~~p~~~ 428 (547)
+++-.+-......... .--..+..-. .+...-+++...-. +. + ..||+.
T Consensus 383 ~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~ 462 (517)
T PF12569_consen 383 RIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL 462 (517)
T ss_pred HHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc
Confidence 5555443321100000 0000011000 11111111111110 00 1 112221
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 429 IWGALVSASVMH-GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 429 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+.-+.+. .-.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 463 -----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 -----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred -----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 2222333 3578899999999999999999999999999999999998887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-09 Score=92.15 Aligned_cols=231 Identities=11% Similarity=0.091 Sum_probs=190.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
-+-+..+|.+.|.+.+|.+.++.- .+ -.|-..||..+-+.|.+..+...|..++.+-.+.- +.++....-..+.+.
T Consensus 226 k~Q~gkCylrLgm~r~Aekqlqss-L~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSS-LT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHH-hh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 367889999999999999999877 44 35666788889999999999999999998877763 445555566788888
Q ss_pred hcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044812 304 KCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 304 ~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 381 (547)
..++.++|.++|+.. .. ..++....++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...++++-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999873 21 345566677778899999999999999999999976 678899999999999999999999
Q ss_pred HHHHHHhcCCCCc--hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 382 YNSVINTYRIKPT--TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 382 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
|++.... .-.|+ ..+|-.+.......|++.-|.+-|+-. ...| +...++.|.-.-.+.|+++.|..+++.+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9988654 33343 567888888889999999999999876 3334 56689999998999999999999999999988
Q ss_pred CCC
Q 044812 458 PEN 460 (547)
Q Consensus 458 ~~~ 460 (547)
|.-
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 863
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-09 Score=104.42 Aligned_cols=212 Identities=12% Similarity=0.067 Sum_probs=163.5
Q ss_pred CCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCC
Q 044812 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK---------CGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGK 339 (547)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~ 339 (547)
+++++|...+++..+.. +.+...|..+..+|.. .+++++|...+++ +...| +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678999999988775 3345566666655542 3458899999986 33344 56678888888999999
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHH
Q 044812 340 GHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
+++|...|++..+. .| +...+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999986 45 4667888888999999999999999999854 453 23333445556778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 418 IKTMP--VEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 418 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+++.. ..|+ ...+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98872 2354 4457778888999999999999999988888887778888888888888 4888888877643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-09 Score=94.53 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSAC 369 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~ 369 (547)
..|..+...|...|+.++|...|++ +...| +...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3455556666666666666666654 22233 3455666666666777777777776666653 343 45555666666
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
...|++++|.+.|+...+. .|+..........+...++.++|...|++. ...|+...+ .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-
Confidence 6667777777776666543 232211111112233455666776666543 112222111 1222234444332
Q ss_pred HHHHHHH-------hhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 448 LAYKSLI-------QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 448 ~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333332 2334455567777777777777777777777666544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-06 Score=77.59 Aligned_cols=408 Identities=11% Similarity=0.113 Sum_probs=244.0
Q ss_pred hhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHh
Q 044812 72 TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150 (547)
Q Consensus 72 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (547)
+.++....+|+ ..|-.-+..+.++|+.......|+..+.. -+......|...+......+-.+.+.++++..++.
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44444444444 45777788888999999999999887653 44556677888999989999999999999998764
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC----------ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC-
Q 044812 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR----------NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR- 219 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~- 219 (547)
++..-+..+..+++.+++++|-+.+...... +...|..+-....+.-+.-.......+++.+...
T Consensus 168 ----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 ----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred ----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 3334677788899999999999999888753 2234555555555544433333344555555442
Q ss_pred -C--hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc----------------cC------Cch
Q 044812 220 -N--VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS----------------LI------GLS 274 (547)
Q Consensus 220 -~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----------------~~------~~~ 274 (547)
| ...|++|+..|.+.|++++|..+|++. ... ..+..-|..+..+|.. .+ +++
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeea-i~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEA-IQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 2 357999999999999999999999987 332 1222223333333321 11 122
Q ss_pred hHHHHHHHHHHcCC-----------CCchhHHHHHHHHHHhcCCHHHHHHHHhcC--CCCC------ChhhHHHHHHHHH
Q 044812 275 GGKQIHGFAIRKEL-----------NHDVSLCNALIDMYSKCGSLDCARRVFEDS--SFNK------DAITWSSIVSGYG 335 (547)
Q Consensus 275 ~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~------~~~~~~~li~~~~ 335 (547)
....-|+.+...+. +.++..|..-+.. ..|+..+-...|.+. .+.| -...|..+...|-
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 22333333333220 1122222222222 234445555555431 1111 1234777778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC----------CC------chh
Q 044812 336 LHGKGHEAVLLYNKMVCLGSKPD---IITIVGVLSACGRSGLINEGLEIYNSVINTYRI----------KP------TTE 396 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~------~~~ 396 (547)
..|+.+.|..+|++..+...+-- ..+|..-...=.+..+++.|.++.+....-... ++ +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 88888888888888776533211 223333334444566777777777766432000 00 123
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC----CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCchHHHHHH
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM----PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLE--PENPSNYVSLSN 469 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 469 (547)
.|...++.....|-++....+++++ ...|... .|..+ +-.+.-++++.+++++-+.+- |.-...|+..+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 3555566666677777777777776 2334433 23322 345566788888888877764 333345555554
Q ss_pred HHHc---CCCHHHHHHHHHHHHhCCCccCC
Q 044812 470 LYAS---SRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 470 ~~~~---~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
-+.+ ..+.+.|..+|+...+ |.+|.-
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 4433 2468888888888887 655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-08 Score=94.65 Aligned_cols=270 Identities=10% Similarity=0.070 Sum_probs=190.4
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC-- 305 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 305 (547)
...+...|++++|++.+..- ...+......+......+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~--~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKN--EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhh--hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 45567889999999999765 22244445556677788889999999999999999887 45555566666665332
Q ss_pred ---CCHHHHHHHHhcCC-CCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044812 306 ---GSLDCARRVFEDSS-FNKDAITWSSIVSGYGLHGKGH-EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380 (547)
Q Consensus 306 ---g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 380 (547)
.+.+...++|+++. .-|.......+.-.+.....+. .+..++..+...|+++ +|..|-..|....+..-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 24677777777643 1233333333322222222333 4556777888888764 55556555666666666666
Q ss_pred HHHHHHHhc-------------CCCCchh--HHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 044812 381 IYNSVINTY-------------RIKPTTE--ICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNS 443 (547)
Q Consensus 381 ~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 443 (547)
++....... .-+|+.. ++..+...|-..|++++|++++++. ...|+ +..|..-.+.+.+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 666654321 0123332 4466788899999999999999976 56786 45888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCC-----ccceEee
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP-----GCSWISI 503 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~~ 503 (547)
.+|.+.++.+.++++.|..+-...+..+.+.|+.++|.+++..+-+.+..|.. .+.|+.+
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 99999999999999999988889999999999999999999999877763332 3456655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.8e-07 Score=87.42 Aligned_cols=425 Identities=12% Similarity=0.063 Sum_probs=268.2
Q ss_pred CCcchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC----CC-cchHHHH
Q 044812 18 YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH----KD-VYLYNSL 92 (547)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~l 92 (547)
.++..+.++.-++..||++..+.+.|++....- .-....|+.+--.|...|.-..|..+.+.-.. |+ ...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 355568999999999999999999999987764 34677888999999999999999999987654 22 2233333
Q ss_pred HHHHHh-cCChhHHHHHHHHhhhC--CC--CCCcchHHHHHHHHccC-----------CCcHHHHHHHHHHHHhCCCCch
Q 044812 93 INGYVK-NHGHNEALELFSNMYYS--NV--SPDDFTLATISKLSGEI-----------KDLNVGMLIHGLSIKIGFVVDV 156 (547)
Q Consensus 93 l~~~~~-~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~ 156 (547)
-..|.+ -+..++++++-.+.... +. ...+..|..+.-+|... ....++.+.++..++.+. .|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 334443 36667777666666551 11 12344555555554322 123466777888877663 244
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC---ChhhHHHHHH
Q 044812 157 ILANSLMSMYVKCGKFSECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR---NVYAWTAMIN 229 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~---~~~~~~~li~ 229 (547)
.+...+.--|+..++++.|.....+..+ .+...|..+...+...+++.. |+.+.+..... |......-+.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~---Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE---ALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHhhhhhhhchhhhh
Confidence 4434455567888999999888777654 467789999999999999888 55555443322 2222222334
Q ss_pred HHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHH--cCCCCchhHHHHHHHHHHhcCC
Q 044812 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 230 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
.-...++.++++.....+..-..-.+.. ...++-....+....+.- ....-...++..+.......+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 4455788888888877662110000000 011111111111111100 0011122333333322221111
Q ss_pred ---HHHHHHHHhcCCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 308 ---LDCARRVFEDSSFNKDA------ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 308 ---~~~A~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+..+..+.... .|+. ..|......+.+.++.++|...+.+.... .+-....|......+...|+.++|
T Consensus 626 ~~~se~~Lp~s~~~~-~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLP-GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hcccccccCcccccC-CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHH
Confidence 111111111111 2331 23556667888899999998888887664 233456677777788889999999
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 379 LEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALD--FIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.+.|.... -+.| ++....++..++.+.|+..-|.. ++..+ ...| +...|..++..+.+.|+.+.|.+.|+.+
T Consensus 704 ~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99998776 4466 57788899999999998877777 88776 5556 5779999999999999999999999999
Q ss_pred HhhCCCCCc
Q 044812 454 IQLEPENPS 462 (547)
Q Consensus 454 ~~~~~~~~~ 462 (547)
.++++.+|.
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999866553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-08 Score=88.14 Aligned_cols=230 Identities=10% Similarity=-0.038 Sum_probs=154.5
Q ss_pred CCCHHHHHHHHHHchhcCCCCCC--hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044812 234 NGDLDEALVLFLEMQLKDRIEPN--KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 234 ~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (547)
.+..+.++.-+.++.......|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566677777666333333333 2456666777888888888888888888765 45678899999999999999999
Q ss_pred HHHHhc-CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 312 RRVFED-SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 312 ~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
...|++ +.+.|+ ...|..+...+...|++++|.+.|++..+. .|+..........+...++.++|.+.|++....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999987 333454 567888888899999999999999999885 454332222222345567899999999776543
Q ss_pred CCCCchhHHHHHHHHhHhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 044812 390 RIKPTTEICACVVDMLGRAGQLD--RALDFIKTM-PV----EP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN- 460 (547)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 460 (547)
..|+...+ .+... ..|+.. ++.+.+.+. .. .| ....|..++..+...|++++|+..|+++++.+|++
T Consensus 195 -~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23333222 23332 344443 333333322 11 12 23578999999999999999999999999999754
Q ss_pred CchHHHHHHHH
Q 044812 461 PSNYVSLSNLY 471 (547)
Q Consensus 461 ~~~~~~l~~~~ 471 (547)
...-..++...
T Consensus 271 ~e~~~~~~e~~ 281 (296)
T PRK11189 271 VEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHH
Confidence 33333344433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.8e-07 Score=79.87 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=165.3
Q ss_pred HHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 044812 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309 (547)
Q Consensus 230 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 309 (547)
.+.+.|+++....+...+... ..-+...|..-...+...++++.|..+-++.++.+ +.+...+-.-..++...|+.+
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 345667777777666665211 11222233333344455667777777777776654 344555655667788889999
Q ss_pred HHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHH
Q 044812 310 CARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL-SACG-RSGLINEGLEIYNSV 385 (547)
Q Consensus 310 ~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~ 385 (547)
+|.-.|+.. .. +-+..+|.-|+.+|...|++.+|.-.-+...+. +..+..+.+.+. ..|. ...--++|..++++.
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999762 22 346788999999999999999998877766554 344566666663 3333 334457888888877
Q ss_pred HHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 386 INTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 386 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|...+...+.+++|...|..+++.+|.+..+
T Consensus 431 L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 431 L---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred h---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 6 44564 566778889999999999999999986 678999999999999999999999999999999999988654
Q ss_pred H
Q 044812 464 Y 464 (547)
Q Consensus 464 ~ 464 (547)
.
T Consensus 508 l 508 (564)
T KOG1174|consen 508 L 508 (564)
T ss_pred H
Confidence 4
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-07 Score=76.26 Aligned_cols=386 Identities=10% Similarity=0.060 Sum_probs=217.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHH-HHHHHH
Q 044812 89 YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS-LMSMYV 167 (547)
Q Consensus 89 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~ 167 (547)
+++.+..+.+..++..|++++....++..+ +....+.+..+|....++..|-..++++-..- |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 344555556666666666666666554321 44555666666666666666666666654432 22222211 123445
Q ss_pred hcCChHHHHHHhccCCCC-ChhhHHHHH--HHHHcCCCchhHHHHHHHHhhcC-CCChhhHHHHHHHHHHCCCHHHHHHH
Q 044812 168 KCGKFSECLNLFDEMPQR-NVGSWNVRI--SGHASSGDFSLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVL 243 (547)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~-~~~~~~~li--~~~~~~g~~~~a~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (547)
+.+.+..|+++...|... +...-..-+ .+....+++.. +..+.+..+ +.+..+.+.......+.|+++.|++-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g---~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPG---SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcc---hHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 566667777776666553 211111111 22334555555 666666666 35666666667777788888888888
Q ss_pred HHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC-------------c---------------hhHH
Q 044812 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-------------D---------------VSLC 295 (547)
Q Consensus 244 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~ 295 (547)
|+...+-.|.+|- ..|+.- -+..+.++++.|.+...+++++|++. | ...+
T Consensus 167 FqaAlqvsGyqpl-lAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 167 FQAALQVSGYQPL-LAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHhhcCCCch-hHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 8887555666654 334433 35566788888888888888776531 1 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 296 NALIDMYSKCGSLDCARRVFEDSSF----NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
|.-...+.+.|+++.|.+.+-+|+- ..|++|...+.-.- ..+++....+-+.-+..... -...||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 3334445678899999999888762 13556654443221 23445555555565655533 346789999999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHhHh-cCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCC---HH
Q 044812 372 SGLINEGLEIYNSVINTYRIK-PTTEICACVVDMLGR-AGQLDRALDFIKTMPVEP--SPSIWGALVSASVMHGN---SE 444 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~---~~ 444 (547)
..-++.|..++-+-... ..+ .+...|+ |++++.. .-..++|++-++.+...- .......-+.--...++ ..
T Consensus 323 Neyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 99888888886643211 111 1333443 3344433 346677766665541000 00011111111111111 23
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+++-+++.+++-- .+....++.|.+..++..+.++|+.-.+
T Consensus 401 ~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 401 KAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 34444555555431 1456677888999999999999987544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.3e-07 Score=84.34 Aligned_cols=386 Identities=12% Similarity=0.091 Sum_probs=223.0
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 044812 98 KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177 (547)
Q Consensus 98 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 177 (547)
..+++.+.++..+.+.+. ..-...|.....-.+...|+-++|....+...+.+ ..+.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 334555555555555542 22223333333334445566666666655555543 2244555555555555666666666
Q ss_pred HhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 178 LFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 178 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
.|..... .|...|..+.-.-...++++........+-+........|..++.++.-.|++..|..+++.........
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6665432 2344444444444444555544334444444445566788999999999999999999999984333345
Q ss_pred CChHHHHhHHH------HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhH
Q 044812 255 PNKVSLVSVLP------TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITW 327 (547)
Q Consensus 255 p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 327 (547)
|+...+..... .....|..+.|.+.+..-...- ......-..-...+.+.+++++|..++..+ ...||...|
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 66665544433 3456677777777665543321 112223345567788999999999999874 235777666
Q ss_pred HHHH-HHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044812 328 SSIV-SGYGLHGKGHEAV-LLYNKMVCLGSKPDIITIVGV-LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404 (547)
Q Consensus 328 ~~li-~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (547)
.... .++.+..+.-+++ .+|....+. .|....-..+ +.......-.+....++....++ |+++-... +...
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~vf~d---l~SL 329 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSVFKD---LRSL 329 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCchhhh---hHHH
Confidence 6555 4443333333444 566655543 2221111111 11111222233344455555555 66543322 3333
Q ss_pred hHhcCCHH----HHHHHHHhC-C------------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 405 LGRAGQLD----RALDFIKTM-P------------VEPSPSIW--GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 405 ~~~~g~~~----~A~~~~~~~-~------------~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
|-.-...+ -+..+...+ + ..|....| ..+...+-..|+++.|...++.++..-|.-+..|.
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~ 409 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL 409 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH
Confidence 32211111 111122212 1 24555544 55677788999999999999999999998888898
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 466 SLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
.=++++...|+.++|..++++.++.+.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999999999999999999877654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-06 Score=86.98 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+..|+.+..+-.+.|...+|.+-|-+. -|+..|.-+++.+.+.|.+++-.+++.-.+++ .-.|.+. +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 456888888888888888888776543 35678999999999999999999999877655 4455544 47899
Q ss_pred HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
+|++.+++.+.++++. -|+..-...++.-|...|.++.|.-+|.. .+.|..|+..+...|.++.|.+.
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777653 47777788888999999999988888775 34588888888888888887765
Q ss_pred HHH
Q 044812 484 RTM 486 (547)
Q Consensus 484 ~~~ 486 (547)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-06 Score=76.40 Aligned_cols=52 Identities=6% Similarity=-0.029 Sum_probs=40.2
Q ss_pred HhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC
Q 044812 31 ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83 (547)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 83 (547)
..-|++.+|..+++-+.+.. .++...+-.|.-.+.-.|.+.+|..+-.+.++
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK 119 (557)
T ss_pred HhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33489999999999988855 66677777777666677999999988777653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-07 Score=85.75 Aligned_cols=219 Identities=16% Similarity=0.266 Sum_probs=137.4
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
..+...|+++.|+.-|-+. . .....+.+......+.+|..+++.+.+... ...-|..+.+.|...|++
T Consensus 714 ~hl~~~~q~daainhfiea-~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEA-N---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHh-h---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445556666666666544 1 122334455666777778777777766542 223466677788888888
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 044812 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388 (547)
Q Consensus 309 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 388 (547)
+.|.++|-+-+ .++--|..|.+.|+++.|.++-.+.. |.......|..-..-+...|++.+|+++|-.+.
T Consensus 782 e~ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-- 851 (1636)
T KOG3616|consen 782 EIAEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-- 851 (1636)
T ss_pred HHHHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--
Confidence 88888887655 24445677888888888877765542 233344455555555677788888877765442
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
.|+. -|.+|-+.|..++.+++.++-.-..-..|...+..-+-..|+.+.|+..|-++- -|..-+
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaav 915 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAV 915 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHH
Confidence 2432 456777888888888887776322233466667777777788877777665532 255555
Q ss_pred HHHHcCCCHHHHHHHHH
Q 044812 469 NLYASSRRWDAVAELRT 485 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~ 485 (547)
++|...+.|++|-++-+
T Consensus 916 nmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 916 NMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhhhhhhHHHHHHHHh
Confidence 66666666666655544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-07 Score=75.59 Aligned_cols=168 Identities=12% Similarity=0.060 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 367 (547)
+..++..+...|.+.|+.+.|.+.|++ +.+.| +-...|.....+|..|++++|...|++....-.-| -..||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 344555555556666666666666654 22222 33445555555666666666666666655532111 1345555555
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~ 444 (547)
+..+.|+.+.|...|++..+. .| .......+.....+.|++..|..+++.. ...++..++-..+..-...||..
T Consensus 148 Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 556666666666666655543 22 3344445555556666666666666554 22355555555555555666666
Q ss_pred HHHHHHHHHHhhCCCCC
Q 044812 445 MQDLAYKSLIQLEPENP 461 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~ 461 (547)
.+-+.=.++.+.-|.++
T Consensus 225 ~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 225 AAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHHHhCCCcH
Confidence 66655555555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-06 Score=76.39 Aligned_cols=295 Identities=14% Similarity=0.087 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHH---HHHcCCCchhHHHHHHHHhhcCCCChhhHHH---HHHH
Q 044812 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS---GHASSGDFSLVVRSRRVFDQMKRRNVYAWTA---MING 230 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~---li~~ 230 (547)
.-.--+...+...|++..|+.-|....+-|+..|..+.+ .|...|+... |+.-+.+..+..+..+.+ -...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~---al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA---ALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc---chhhHHHHHhcCccHHHHHHHhchh
Confidence 333445666777788888888888887777776666543 5666666655 333333333222222222 2356
Q ss_pred HHHCCCHHHHHHHHHHchhcCCCCCC------------h--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHH
Q 044812 231 YVQNGDLDEALVLFLEMQLKDRIEPN------------K--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~~~~~p~------------~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (547)
+.+.|.++.|..=|+.. .+.....+ . ......+..+...|+...|......+.+.. +.+...+.
T Consensus 116 llK~Gele~A~~DF~~v-l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQV-LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhcccHHHHHHHHHHH-HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 78899999999988887 44322111 0 112334456677888888888888888875 66788888
Q ss_pred HHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHHH---
Q 044812 297 ALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT----IVGVL--- 366 (547)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l~--- 366 (547)
.-..+|...|++..|+.-++. +. ..+.....-+-..+...|+.+.++...++-++ +.||... |..|-
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHH
Confidence 888889999999988877765 33 45566666777778888888888888888776 4666432 11110
Q ss_pred ------HHHhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 044812 367 ------SACGRSGLINEGLEIYNSVINTYRIKPT-----TEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGAL 433 (547)
Q Consensus 367 ------~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 433 (547)
......+.+.++.+-.+...+. .|. ...+..+-.++...|++-+|++...+. .+.|+ ..++.-=
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 1123445555666555555543 222 223334445555666777776666654 44454 4466666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
..+|.-...++.|+.-|+.+.+.++.|..
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 66666666777777777777777666543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=90.28 Aligned_cols=227 Identities=13% Similarity=0.114 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC-CchhHHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNALID 300 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 300 (547)
.....+.+++...|+++.++. ++ ... -.|.......+...+...++.+.+..-++........ .+..+......
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~---ei-~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLS---EI-KKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH---HS--TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHH---Hh-ccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344556778888888776543 33 232 2666666655555554444444444444433333322 23333333445
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHH
Q 044812 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR----SGLIN 376 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 376 (547)
++...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+++.
T Consensus 111 i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 566788899888888765 34566667778888899999999999888774 333 444445554332 34688
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS-EMQDLAYKSL 453 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 453 (547)
+|..+|+++..+ ..+++.+.+.+..+....|++++|.+++++. ...| ++.++..++.+....|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888888653 4567778888888888888888888888775 3334 445777777777777776 6677788888
Q ss_pred HhhCCCCC
Q 044812 454 IQLEPENP 461 (547)
Q Consensus 454 ~~~~~~~~ 461 (547)
....|.++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 87777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-08 Score=93.76 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=170.3
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHH
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAV 344 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~ 344 (547)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++ ..+.| |....-.|...|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456777888888888877775 55677888888888888888888877776 33444 5567778888899999888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH
Q 044812 345 LLYNKMVCLGSKPDIITIVGVL-----------SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413 (547)
Q Consensus 345 ~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (547)
..++.-+....+ |..+. ..+.....+....++|-++....+..+|+.++..|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888877654211 00010 12233334556677777777766766888999999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 414 ALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 414 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|.+-|+.. .++|+ ..+||.|+..++...+.++|+..|.+++++.|.-..+...|+..|...|.|++|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999986 67775 56999999999999999999999999999999999999999999999999999999877654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=91.12 Aligned_cols=247 Identities=10% Similarity=0.054 Sum_probs=168.4
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
++-+.-.|++..++.-.+ . ....-..+......+.+++...|+.+.+. ..+.+.. .|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 345566788998887665 4 33222233455667778888888876543 3333333 6666666666655554456
Q ss_pred HHHHHHHHhcCCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 308 LDCARRVFEDSSFNK----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 308 ~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
-+.+..-+++.-..+ +..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667766665421122 2222222335577789999999887642 356777788899999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 384 SVINTYRIKPTTEICACVVDMLG----RAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
.|.+ +..|. +...++.++. -.+.+.+|..+|+++ ...+++.+++.+..++...|++++|.++++++.+.+
T Consensus 156 ~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9963 34443 3333444443 234799999999998 345788899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCCH-HHHHHHHHHHHhC
Q 044812 458 PENPSNYVSLSNLYASSRRW-DAVAELRTMMKDR 490 (547)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 490 (547)
|.++.+...++-+....|+. +.+.+++..++..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999988 6788888887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-06 Score=81.67 Aligned_cols=375 Identities=11% Similarity=0.098 Sum_probs=215.7
Q ss_pred ChhHHHHHHH--HHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC-CC--------CCCcc
Q 044812 54 NPFVSTKLIT--AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NV--------SPDDF 122 (547)
Q Consensus 54 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~--------~p~~~ 122 (547)
|+.+-.++++ .|..-|+.|.|.+-.+.++.. ..|..+.+.|.+.++.+-|.-.+-.|... |. .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4555566655 356668888887777666543 45888888888888888777666666432 11 122 2
Q ss_pred hHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC-hhhHHHHHHHHHcCC
Q 044812 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN-VGSWNVRISGHASSG 201 (547)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g 201 (547)
+=.-+.......|-+++|+.+|++.++.+ .|=..|-..|++++|.++-+.-.+-. ..+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22223333445677777777777766532 23345566777777777655432211 113333333333344
Q ss_pred CchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHH
Q 044812 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281 (547)
Q Consensus 202 ~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 281 (547)
+.+. |++.|++...+--..+..|. .++.....+.+.+ .|...|.....-+...|+.+.|+.+|.
T Consensus 873 Di~~---AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEA---ALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHH---HHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcccchHHHHHHHH
Confidence 4443 44444443322211121111 1111112222222 234556666666677888888888887
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 044812 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361 (547)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 361 (547)
.+.+ |-++++..|-.|+.++|-++-++.| |......|.+.|-..|++.+|..+|.+...
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 6654 5567778888899999988888776 566677788899999999999998887643
Q ss_pred HHHHHHHH---------------hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-----
Q 044812 362 IVGVLSAC---------------GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----- 421 (547)
Q Consensus 362 ~~~l~~~~---------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 421 (547)
|...|+.| ....+.-.|.++|++. |.. ...-+..|-+.|.+.+|+++--+-
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 22222222 1222333444555533 211 112345677788887777763221
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------C-CC---------CCc
Q 044812 422 --------PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL---------------------E-PE---------NPS 462 (547)
Q Consensus 422 --------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-~~---------~~~ 462 (547)
....|+...+--..-+....++++|..++-.+.+. . |. ...
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~ 1146 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQ 1146 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHH
Confidence 12235566666666666777777777665443321 1 11 022
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
....++..+.++|.+..|.+-|..
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhh
Confidence 677889999999998888776654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-05 Score=86.37 Aligned_cols=325 Identities=12% Similarity=0.025 Sum_probs=196.4
Q ss_pred HHhcCChHHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC-C------CC--hhhHHHHHHHHH
Q 044812 166 YVKCGKFSECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-R------RN--VYAWTAMINGYV 232 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~-~------~~--~~~~~~li~~~~ 232 (547)
....|+++.+...++.+.. .+..........+...|+++++........... . +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455666666666665531 122222233334456666666443333222211 1 01 112223345567
Q ss_pred HCCCHHHHHHHHHHchhcCCCCCCh----HHHHhHHHHhhccCCchhHHHHHHHHHHcCC---CC--chhHHHHHHHHHH
Q 044812 233 QNGDLDEALVLFLEMQLKDRIEPNK----VSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL---NH--DVSLCNALIDMYS 303 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 303 (547)
..|++++|...++.. .......+. ...+.+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 464 ~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELA-LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 889999999999886 332111121 2345555667788999999988888765321 11 1234556677788
Q ss_pred hcCCHHHHHHHHhc-------CCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH
Q 044812 304 KCGSLDCARRVFED-------SSFN--K-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCL--GSKPD--IITIVGVLSAC 369 (547)
Q Consensus 304 ~~g~~~~A~~~~~~-------~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 369 (547)
..|+++.|...+++ .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999888764 2211 1 1223445566677789999999988887553 11122 33444556677
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHH-----HHHHHHhHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEIC-----ACVVDMLGRAGQLDRALDFIKTMPV-E-PSP----SIWGALVSASV 438 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~ 438 (547)
...|+.+.|.+.+...............+ ...+..+...|+.+.|..++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88899999999888875421111111111 1122445568899999999877621 1 111 12455677788
Q ss_pred HcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 439 MHGNSEMQDLAYKSLIQLE------PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..|+.++|...++++.+.. +....+...++.++.+.|+.++|.+.+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988752 1123366778889999999999999999887644
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.5e-06 Score=78.06 Aligned_cols=260 Identities=14% Similarity=0.011 Sum_probs=159.7
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhh----ccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS----SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
...+...|++++|.+.+++. ... .+.+...+.. ...+. ..+....+.+.+.. .....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~-l~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQL-LDD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHH
Confidence 45567889999999999887 332 2223333332 22222 23444555554443 11111223344456677888
Q ss_pred hcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHH
Q 044812 304 KCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDI--ITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 304 ~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a 378 (547)
..|++++|...+++ ... +.+...+..+...|...|++++|..++++...... .|+. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999987 222 34456678888899999999999999998877532 2232 3455677888999999999
Q ss_pred HHHHHHHHHhcCCCCchhHH-H--HHHHHhHhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044812 379 LEIYNSVINTYRIKPTTEIC-A--CVVDMLGRAGQLDRALDF---IKT---M-PVEPSPSIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 448 (547)
..++++........+..... + .++..+...|....+.++ ... . +.............++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99999875431111222111 1 223333444433333222 111 1 111112222356677788999999999
Q ss_pred HHHHHHhhCCC---------CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 449 AYKSLIQLEPE---------NPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 449 ~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+++.+...... ........+.++...|++++|.+.+......+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99998764311 23344566677789999999999999887554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-05 Score=80.22 Aligned_cols=358 Identities=13% Similarity=0.137 Sum_probs=187.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 044812 84 KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 162 (547)
.|+..-+..+.++...+-+.+-+++++++.-.+. -........|+-.-+-.-+..++.++.+++-..+ .| .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-ch------hH
Confidence 3555566677888888888888888888763211 1111112222222223334445555555543322 11 23
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHH
Q 044812 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242 (547)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (547)
.......+-+++|..+|+...- +....+.||.-. ++.+. |.+..++..+| ..|..+..+-.+.|...+|++
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie~i---~~ldR---A~efAe~~n~p--~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIENI---GSLDR---AYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHHHh---hhHHH---HHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHH
Confidence 3444555666777777765432 222233333222 22222 44555544433 346677777777777777777
Q ss_pred HHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 044812 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322 (547)
Q Consensus 243 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 322 (547)
-|-+. -|+..|.-++..+.+.|.+++-.+++...++..-.|.. -+.|+-+|++.+++.+..+++. .|
T Consensus 1126 Syika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gp 1192 (1666)
T KOG0985|consen 1126 SYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA----GP 1192 (1666)
T ss_pred HHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc----CC
Confidence 66444 24456677777777777777777777766666544443 3456667777777666665553 23
Q ss_pred Chhh--------------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 323 DAIT--------------------------WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 323 ~~~~--------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
|... |..|...+...|++..|.+.-++. .+..||..+-.+|...+.+.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 3333 444444444455555444433321 23455666655665554443
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
-| ++.-- ++.....-..-++..|...|-+++-..+++.. +.+ .....|+.|.-.|.+- ++++..+.++-..
T Consensus 1267 lA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1267 LA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred HH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 32 12110 12223444556677777777777777777654 332 2344555555555443 4444444444433
Q ss_pred hhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..- ..-.+++++..+..|.+..-++.+-.
T Consensus 1340 sRv-----NipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1340 SRV-----NIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred Hhc-----chHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 11235666666677777766665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-05 Score=77.27 Aligned_cols=342 Identities=12% Similarity=0.093 Sum_probs=207.4
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 044812 96 YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 96 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 175 (547)
....+.|.+|+.+++.+..... -..-|..+...|+..|+++.|.++|-+. ..++..|..|.+.|+|..|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 3456678888888887776532 3445777888999999999999888543 2356678889999999999
Q ss_pred HHHhccCCCCCh--hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCC
Q 044812 176 LNLFDEMPQRNV--GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253 (547)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 253 (547)
.++-++...|.. ..|-.-..-+-+.|++.+ |.+++-.+..|+. .|..|-+.|..+..+++..+- ..
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~e---aeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-h~--- 878 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAE---AEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-HG--- 878 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhh---hhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-Ch---
Confidence 999888877643 345555566777888877 7778877777764 477888999999988888654 11
Q ss_pred CCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhh-----HH
Q 044812 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT-----WS 328 (547)
Q Consensus 254 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~ 328 (547)
..-..|...+..-+...|++..|..-|-+.. -|.+-+++|..++-+++|.++-+.-| ..|..- |.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHH
Confidence 1123455666777788888888887765432 36667788888888888888876544 222211 11
Q ss_pred H-------------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 329 S-------------------IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 329 ~-------------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
. -+..-+..+-++-|.++-+-..+.. .|. ....+..-+...|++++|-+.+-+.++-.
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1 1112233344444444433333221 122 12223334567888999888777666431
Q ss_pred CCCCchhHHHH-------------------HHHHhHhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 044812 390 RIKPTTEICAC-------------------VVDMLGRAGQLDRALDFIKTMPVEPSP--SIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 390 ~~~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~ 448 (547)
. -..+|.. -+.++.+..++..|.++-+.- .|+. ..+..-.++....|++.+|+.
T Consensus 1026 t---ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aiee~d~~kae~ 1100 (1636)
T KOG3616|consen 1026 T---YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAEG 1100 (1636)
T ss_pred c---ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhccccccchhhhhh
Confidence 1 1111111 122333334444444433322 2332 244444455556777777776
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++-++ ..|+ ..++.|...+.|.+|.++.+.
T Consensus 1101 fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1101 FLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred heeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 65433 1232 234556677788888777654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.7e-06 Score=76.79 Aligned_cols=410 Identities=12% Similarity=0.084 Sum_probs=235.4
Q ss_pred HHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH
Q 044812 62 ITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 138 (547)
++.+...|++++|.+...++.. | +.....+=+-++.+.+++++|+.+.+.-... .-+..-+--=..+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 4556677899999998888764 3 4556666677888999999999665443211 111111111233445788999
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC
Q 044812 139 VGMLIHGLSIKIGFVVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217 (547)
Q Consensus 139 ~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~ 217 (547)
+|...++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+..-.... ...+.+..+
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l---~~~~~q~v~ 168 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL---QVQLLQSVP 168 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---hHHHHHhcc
Confidence 9988887 33333 33555556778899999999999999977655544433332211111000 111344444
Q ss_pred CCChhhHH---HHHHHHHHCCCHHHHHHHHHHchhcC-------CCCCCh------H-HHHhHHHHhhccCCchhHHHHH
Q 044812 218 RRNVYAWT---AMINGYVQNGDLDEALVLFLEMQLKD-------RIEPNK------V-SLVSVLPTCSSLIGLSGGKQIH 280 (547)
Q Consensus 218 ~~~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~-------~~~p~~------~-~~~~ll~~~~~~~~~~~a~~~~ 280 (547)
.....+|. .....+...|++.+|+++++.. .+. +-.-+. . .-.-+.-.+-..|+.++|..++
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA-~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKA-LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 43333443 3456778899999999999876 111 111111 1 1122334566789999999999
Q ss_pred HHHHHcCCCCchhH----HHHHHHHHHhcCCHH-HHHHHHhcCCCC-------------CChhhHH-HHHHHHHhcCChH
Q 044812 281 GFAIRKELNHDVSL----CNALIDMYSKCGSLD-CARRVFEDSSFN-------------KDAITWS-SIVSGYGLHGKGH 341 (547)
Q Consensus 281 ~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~A~~~~~~~~~~-------------~~~~~~~-~li~~~~~~~~~~ 341 (547)
....+... +|... -|.|+.+-....-++ .++..++..... ......| .++..|. +.-+
T Consensus 248 ~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~ 324 (652)
T KOG2376|consen 248 VDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMD 324 (652)
T ss_pred HHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHH
Confidence 99988773 33322 223332211111111 222223221100 1111111 2222222 2223
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHH
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACG--RSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFI 418 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 418 (547)
.+.++....- +..|. ..+..++..+. +.....++.+++....+. .+-. ..+.-.++......|+++.|.+++
T Consensus 325 q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3333322221 22333 34455555433 223577888888877654 2223 455667788888999999999999
Q ss_pred H--------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CC---CCCchHHHHHHHHHcCCCHHHHHH
Q 044812 419 K--------TM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL----EP---ENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 419 ~--------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
. .+ .+.-.+.+...++..+.+.++.+.|..++..++.- .+ .-...+..++..-.+.|+.++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 33 22334445566777788888888888888887753 12 223345566667778899999999
Q ss_pred HHHHHHhC
Q 044812 483 LRTMMKDR 490 (547)
Q Consensus 483 ~~~~m~~~ 490 (547)
+++++.+.
T Consensus 480 ~leel~k~ 487 (652)
T KOG2376|consen 480 LLEELVKF 487 (652)
T ss_pred HHHHHHHh
Confidence 99998763
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-07 Score=76.33 Aligned_cols=304 Identities=14% Similarity=0.150 Sum_probs=152.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC---hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHH-HHHHHHHC
Q 044812 159 ANSLMSMYVKCGKFSECLNLFDEMPQRN---VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA-MINGYVQN 234 (547)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~-li~~~~~~ 234 (547)
+.+.+.-+.+..++..|++++..-.+++ ....+.+..+|....++..|....+-+.... |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHh
Confidence 4555555677778888888776655433 3344555556666666655333322222221 22222211 23445556
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHH--HHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVL--PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (547)
+.+..|+++...| ... |+...-..-+ ....+.+++..+..++++.-..| +..+.+.......+.|+++.|.
T Consensus 92 ~i~ADALrV~~~~-~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLL-LDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHh-cCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 6666666666555 221 2211111111 11233444545544444432211 2333333444444555555555
Q ss_pred HHHhc----CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH---HHH--
Q 044812 313 RVFED----SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE---IYN-- 383 (547)
Q Consensus 313 ~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~---~~~-- 383 (547)
+-|+. .|.+| ...||.-+. ..+.|+++.|++...++++.|++-.+. +++ |...+... +=+
T Consensus 165 qkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgI--------Gm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGI--------GMTTEGIDVRSVGNTL 233 (459)
T ss_pred HHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCc--------cceeccCchhcccchH
Confidence 55543 12111 223333322 233455555555555555555432111 000 00000000 000
Q ss_pred HHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP----VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.|-. ..-+..+|.-...+.+.|+++.|.+.+-.|| ...|++|+..+.-. -..+++....+-++-+++.+|-
T Consensus 234 ~lh~----Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 234 VLHQ----SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred HHHH----HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 0000 0001223333344567899999999999995 33577777665432 2345677777777778888988
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.+.+|..++-.|++..-++-|.+++-+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888999999999999999999888765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-06 Score=79.72 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=164.1
Q ss_pred hccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-------------CCcchHHHHHHHHHh
Q 044812 32 THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-------------KDVYLYNSLINGYVK 98 (547)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~~ll~~~~~ 98 (547)
.-|+++.|.+-.+.+. +..+|..+.+.|.+..+.|-|.-.+..|.. ++ ..-....-....
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 3478888877666553 457899999999999999999988888753 22 111122222356
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 178 (547)
.|..++|..+|.+.++ |..+=..|...|.+++|.++-+.--+.. =..||.....-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 7899999999999876 3455567888999999998876533222 234566666667778999999999
Q ss_pred hccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH
Q 044812 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258 (547)
Q Consensus 179 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 258 (547)
|++...+-......|..- +. ......+++. |...|.-....+-..|+.+.|+.+|... +
T Consensus 881 yEK~~~hafev~rmL~e~------p~---~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A-~--------- 939 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEY------PK---QIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSA-K--------- 939 (1416)
T ss_pred HHhcCChHHHHHHHHHhC------hH---HHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHh-h---------
Confidence 998765422222221110 00 0222233333 3344555566667789999999999887 3
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
-|..+++..|-.|+.++|.++-++ .| |......|.+.|...|++.+|..+|-+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 366778888889999999887653 33 566677789999999999999988864
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-06 Score=82.76 Aligned_cols=220 Identities=10% Similarity=-0.020 Sum_probs=108.7
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-----C--CCCCChhhHHHHHHHHHhcCC
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-----S--SFNKDAITWSSIVSGYGLHGK 339 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~--~~~~~~~~~~~li~~~~~~~~ 339 (547)
+.+..+++.|...|....... +.+...|--........|+.-++..+|.. + +--++..-|-+-......+|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 334445555555555544432 22333333333333445555555555542 1 111233323333333344454
Q ss_pred hHHHHHHHH----------HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHH----HHHHh
Q 044812 340 GHEAVLLYN----------KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC----VVDML 405 (547)
Q Consensus 340 ~~~a~~~~~----------~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~ 405 (547)
.++-....+ +... |.+-....|........+.+.+..|.+...+.+.-...+.+...|+. +...+
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 443332222 2222 22334556666666666667777666666554432222334444543 33445
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHcCCCHHHHHH
Q 044812 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
+..|.++.|..-+...+..-+..+-..-+.. .-.++++++.+.|++++.+...+ ......++.+....+.-+.|..
T Consensus 1018 lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1018 LSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 5667777666655544322232222222221 44678888888888888764222 2345556666667777777777
Q ss_pred HHHHHHh
Q 044812 483 LRTMMKD 489 (547)
Q Consensus 483 ~~~~m~~ 489 (547)
.+-+...
T Consensus 1097 lLfe~~~ 1103 (1238)
T KOG1127|consen 1097 LLFEVKS 1103 (1238)
T ss_pred HHHHHHH
Confidence 7665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-05 Score=83.60 Aligned_cols=235 Identities=12% Similarity=-0.006 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCC-C-CC--ChHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC--C-c
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDR-I-EP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN--H-D 291 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 291 (547)
..+.+...+...|++++|...+.+...... . .+ ...++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 445666777889999999988887621111 0 11 1234455566778889999999888776652 211 1 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-----SFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCLG--SKPDII-- 360 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~-- 360 (547)
...+..+...+...|++++|...+.+. ...+. ...+..+...+...|+++.|...+.+..... ......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 233455667777889999999888752 11121 2334556677888999999999988875431 111110
Q ss_pred H-H-HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC-H
Q 044812 361 T-I-VGVLSACGRSGLINEGLEIYNSVINTYRIKPT---TEICACVVDMLGRAGQLDRALDFIKTM-------PVEPS-P 427 (547)
Q Consensus 361 ~-~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 427 (547)
. . ...+..+...|+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 1 0 11123345578999999887765432 11111 112345677788999999999998876 22222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.+...+..++...|+.++|...+.++++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 3667777888999999999999999998763
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-05 Score=73.98 Aligned_cols=426 Identities=11% Similarity=0.036 Sum_probs=239.8
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHH
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEA 105 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A 105 (547)
+....|+++.|...|.+..... ++|...|..-..+|+..|++++|++=-.+-.+ | ....|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4456788999999998888876 45888888888899999999988875554433 3 456788888888888999999
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHH-HHhCCCCchh--------HHHHHHHHH----------
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS-IKIGFVVDVI--------LANSLMSMY---------- 166 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~--------~~~~l~~~~---------- 166 (547)
+.-|.+-++... -|...+.-+..++.. +... .+.|..- .-.++..++. .|..++..+
T Consensus 90 ~~ay~~GL~~d~-~n~~L~~gl~~a~~~--~~~~-~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-SNKQLKTGLAQAYLE--DYAA-DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcCC-chHHHHHhHHHhhhH--HHHh-hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999988776531 133444555555511 0000 0000000 0000000110 111111111
Q ss_pred HhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC---------------CChhhHHHHHHHH
Q 044812 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR---------------RNVYAWTAMINGY 231 (547)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~---------------~~~~~~~~li~~~ 231 (547)
.....+..|...+.....+ .....|....+..+..- ..+.. .-..-.-.+.++.
T Consensus 166 l~d~r~m~a~~~l~~~~~~----------~~~~~~~~~~~~~~~p~-~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDEL----------LFYASGIEILASMAEPC-KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cccHHHHHHHHHHhcCccc----------cccccccccCCCCCCcc-cccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 1100111111111111000 00000000000000000 00000 0112355677788
Q ss_pred HHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHH-------HHHHHHHh
Q 044812 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN-------ALIDMYSK 304 (547)
Q Consensus 232 ~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~ 304 (547)
.+..+++.|++-+... ... .-+..-++....++...|.+..+...-....+.|-. ...-|+ .+..+|.+
T Consensus 235 ykkk~f~~a~q~y~~a-~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKA-LEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHhhhHHHHHHHHHHH-HhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 8888888888888876 442 233444555666777777777776666666655521 112222 23345666
Q ss_pred cCCHHHHHHHHhcCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFEDSS-FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI-ITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.++++.++..|++.- ...+.. ...+....++++.......- +.|.. .-...=...+.+.|++..|+..|
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 677888888887621 011111 11223334455554444433 23332 12222356678889999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+++++. +-|...|..-.-+|.+.|.+..|+.=.+.. ...|+. ..|.--+.++....+++.|.+.|++.++.+|.+
T Consensus 382 teAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 382 TEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9988752 447889999999999999999888876655 344543 366666677777889999999999999999988
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
......+.+++..........++.+
T Consensus 460 ~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 460 AEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 8777777777765433333333333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-05 Score=73.98 Aligned_cols=380 Identities=11% Similarity=0.080 Sum_probs=222.4
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCh
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV-ILANSLMSMYVKCGKF 172 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~ 172 (547)
.+....|+++.|+..|.+.+.... +|...|..-..+++..|++++|.+=-.+.++ +.|+. ..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 455678999999999999987654 3777788889999999999998876666655 45664 5788899999999999
Q ss_pred HHHHHHhccCCCC---ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC-CC------ChhhHHHHHHHHH----------
Q 044812 173 SECLNLFDEMPQR---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-RR------NVYAWTAMINGYV---------- 232 (547)
Q Consensus 173 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~-~~------~~~~~~~li~~~~---------- 232 (547)
++|+..|.+=.+. |...++-+..++...........--.++.... .| ....|..++..+-
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999887654 33345555555511100000000000000000 00 1112222322221
Q ss_pred HCCCHHHHHHHHHHch----hc-------CCCCCC----------------------hHHHHhHHHHhhccCCchhHHHH
Q 044812 233 QNGDLDEALVLFLEMQ----LK-------DRIEPN----------------------KVSLVSVLPTCSSLIGLSGGKQI 279 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~----~~-------~~~~p~----------------------~~~~~~ll~~~~~~~~~~~a~~~ 279 (547)
...+...|.-.+.... .. .+..|. ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111122222221110 00 011110 01133444455555566666666
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhH-------HHHHHHHHhcCChHHHHHHHHH
Q 044812 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITW-------SSIVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~ 349 (547)
+....+.. -+..-++....+|...|.+..+...-.+ .+ .-...-| ..+..+|.+.++++.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 66655554 3444455555666666666555544432 11 0000111 1223345555666667666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-C
Q 044812 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRALDFIKTM-PVEP-S 426 (547)
Q Consensus 350 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 426 (547)
.......|+.. .+....+++........ -+.|.. .-...-...+.+.|++..|+..|.++ ...| |
T Consensus 324 aLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 324 ALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 55543333221 12222333333333221 223322 11112255677889999999999987 3446 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++-.+.+
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66899999999999999999999999999999999999999999999999999999999877655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=78.67 Aligned_cols=184 Identities=12% Similarity=0.013 Sum_probs=121.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDA----ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI--ITI 362 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 362 (547)
.....+..+...+...|+++.|...|++. ...|+. ..+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556677777788888888888888763 223332 35667777888888888888888888775321111 234
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044812 363 VGVLSACGRS--------GLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433 (547)
Q Consensus 363 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 433 (547)
..+..++... |+.++|.+.++.+.+. .|+. ..+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444455443 6677888888887754 3432 22222211110 00000 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...+...|++.+|+..++++++..|.+ +..+..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 667889999999999999999987654 4688999999999999999999999887543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-06 Score=74.08 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=114.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (547)
..|...|+++......+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCH
Confidence 467888888776555433221 11 01223566778887888776542 45888999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSAS-VMHGN--SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987 4455 566888888764 67777 59999999999999999999999999999999999999999999
Q ss_pred HHhCCC
Q 044812 487 MKDRGL 492 (547)
Q Consensus 487 m~~~~~ 492 (547)
+.+..-
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 987654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-05 Score=76.89 Aligned_cols=437 Identities=13% Similarity=0.009 Sum_probs=247.1
Q ss_pred HHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 044812 40 KQSHSQILSLGHISN-PFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 115 (547)
..+...+....+.|+ ...|..|...|+...+...|.+.|+...+ .+..++..+...|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 333334444444455 45788888888888899999999988876 35667888889999999999998883332221
Q ss_pred CCC-CCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHH-H
Q 044812 116 NVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV-R 193 (547)
Q Consensus 116 ~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l 193 (547)
... .-...|....-.+...++...+..-|+...+.. +.|...|..++.+|..+|++..|.++|.+...-++.++-. .
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 100 011112223445667788888888888888776 4578888899999999999999999998877644433222 1
Q ss_pred --HHHHHcCCCchhHHHHHHHHhhcCC-------CChhhHHHHHHHHHHCCCHHHH------------------------
Q 044812 194 --ISGHASSGDFSLVVRSRRVFDQMKR-------RNVYAWTAMINGYVQNGDLDEA------------------------ 240 (547)
Q Consensus 194 --i~~~~~~g~~~~a~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A------------------------ 240 (547)
....+..|.+.++..+....-.... .-..++-.+...+.-.|-..+|
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 2234556666664332221111100 0111222222222222222222
Q ss_pred --------HHHHHHchhcCCCCCChHHHHhHHHHhhccCCc---h---hHHHHHHHHHHcCCCCchhHHHHHHHHHHh--
Q 044812 241 --------LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL---S---GGKQIHGFAIRKELNHDVSLCNALIDMYSK-- 304 (547)
Q Consensus 241 --------~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 304 (547)
..+|-.. + .. .|+......+..-..+.+.. + .+.+.+-.- .....+..+|..|+.-|.+
T Consensus 715 ~Wi~asdac~~f~q~-e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQE-E-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred HHHHHhHHHHHHHHh-c-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHH
Confidence 2222222 1 11 22222222222212222222 1 000000000 0111123334444433332
Q ss_pred --c----CCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 305 --C----GSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 305 --~----g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
. .+...|+..+.. ... ..+...||.|.-. ...|++.-|...|-+-.... +-+..+|..+.-.+....+++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 1 123356666654 222 2345556666554 55577777777766655542 335667777777788889999
Q ss_pred HHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-------PVEPSPSIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 448 (547)
.|...|.... .+.| +...|-.........|+.-++..+|..- +..|+..-|..........|+.++-+.
T Consensus 868 ~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 868 HAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 9999999776 4455 5666665555566778888888888762 233555555555445556666555444
Q ss_pred H----------HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 449 A----------YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 449 ~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
. +++.....|....+|...+....+.+.+.+|.+...+.
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3 34444456888888888888888888888888877765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=85.24 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=155.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
.+|-...-..+...+...|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+|+..-|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35555566778889999999999999999866 466788899999999999999888887 3788999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 445 (547)
......-+++|.++.+....+ .-..+.....+.++++++.+.|+.. .+.| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999988876443 1222333334578999999999864 5555 45689889999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
|.+.|.....++|++...|+.+.-+|.+.|+..+|...+++..+.+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999998877743
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-06 Score=86.55 Aligned_cols=204 Identities=12% Similarity=0.150 Sum_probs=168.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcC-C-CCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 044812 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDS-S-FNK-----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361 (547)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 361 (547)
|.+...|-..|......++.++|.+++++. + +.+ -...|.+++..-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 456667888888889999999999999872 2 111 2245777777777778888889999999874 223567
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP---SPSIWGALVSAS 437 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 437 (547)
|..|...|.+.+++++|.++++.|.++++ .....|...++.+.+..+-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999775 67889999999999999999999999876 3223 344556666677
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
.+.|+.+++..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|++....++.+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 89999999999999999999999999999999999999999999999999998886543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.3e-05 Score=71.24 Aligned_cols=315 Identities=13% Similarity=0.023 Sum_probs=189.2
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH-
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA- 297 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 297 (547)
....|..+...+...|+.+.+.+.+..........++... .......+...|+++.|...++...+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3556777778888888888877777665233322333322 2223345677899999999999988874 334444442
Q ss_pred --HHHHHHhcCCHHHHHHHHhcC-CCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 298 --LIDMYSKCGSLDCARRVFEDS-SFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 298 --l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
........|..+.+.+.+... +..|+. .....+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345566666666542 212332 334456678889999999999999999863 334667788888999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHHHcCCHH
Q 044812 374 LINEGLEIYNSVINTYRIKPTT--EICACVVDMLGRAGQLDRALDFIKTM-PVEP--S-PSIW-G--ALVSASVMHGNSE 444 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~~~~~ 444 (547)
++++|...+++..+.....|+. ..|..+...+...|++++|..++++. ...| . .... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999887642222332 34557888899999999999999986 2223 1 2111 1 2233334445433
Q ss_pred HHHHHHHHHHhh---C-CCCC--chHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc-CCccceEeeCCEEEEEeeCCCCC
Q 044812 445 MQDLAYKSLIQL---E-PENP--SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK-SPGCSWISIHGKTHCFSVADKAH 517 (547)
Q Consensus 445 ~a~~~~~~~~~~---~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 517 (547)
.+.+. +.+... . |... ......+.++...|+.++|..+++.+....... ..+..+..+...+- ........
T Consensus 243 ~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l-~A~~~~~~ 320 (355)
T cd05804 243 VGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA-EALYAFAE 320 (355)
T ss_pred hHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH-HHHHHHHc
Confidence 33332 222221 1 2222 222367778889999999999999987543321 01111111111100 01111235
Q ss_pred CChHHHHHHHHHHHHHHHHcC
Q 044812 518 PCSVSIYEMLDDLILIMRGAA 538 (547)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~ 538 (547)
++.+++.+.|.........-|
T Consensus 321 g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 321 GNYATALELLGPVRDDLARIG 341 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 577788888877766654444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-08 Score=56.96 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=29.0
Q ss_pred hCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC
Q 044812 49 LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82 (547)
Q Consensus 49 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 82 (547)
+|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888874
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=70.74 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=71.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|...|+..... -+.+...+..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344555666777777777777776643 1235666667777777777777777777765 3333 45566777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
.|++++|+..|+++++..|+++..+...+.+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777776666655554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-08 Score=56.23 Aligned_cols=33 Identities=42% Similarity=0.707 Sum_probs=27.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 044812 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 183 (547)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00012 Score=64.90 Aligned_cols=305 Identities=11% Similarity=0.081 Sum_probs=157.6
Q ss_pred HHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHH---HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHH-HHHHHcc
Q 044812 58 STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI---NGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT-ISKLSGE 133 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~ 133 (547)
..-+...+...|++.+|+.-|....+.|+..|.++. ..|...|+...|+.=|...++ .+||-..-.+ -...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334455555566666666666666665555555543 245555555555555555554 3444322111 1223344
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHH
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~ 213 (547)
.|.++.|..=|+..++.. |+..+ ...++.+.-..++-+.+ ...+..+.-+|+...+.....-+
T Consensus 119 ~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHH
Confidence 555555555555554432 11100 01111111111111111 11122233334444433333333
Q ss_pred hhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchh
Q 044812 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293 (547)
Q Consensus 214 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 293 (547)
-++...|...|..-..+|...|++..|+.=++.. .+.. ..+..
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a------------------------------------skLs-~DnTe 224 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQA------------------------------------SKLS-QDNTE 224 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHH------------------------------------Hhcc-ccchH
Confidence 3333445555555556666666666665555444 2222 12233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhh----HHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCC-
Q 044812 294 LCNALIDMYSKCGSLDCARRVFED-SSFNKDAIT----WSSI---------VSGYGLHGKGHEAVLLYNKMVCLGSKPD- 358 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~----~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~- 358 (547)
.+..+-..+...|+.+.++...++ +.+.||... |-.+ +......++|-++++..+...+......
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 333444455555555555555544 333444321 1111 1223456777788887777766533212
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 359 --IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 359 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
...+..+-.++...+++.+|++...+.. .+.| |+.++.--..+|.-...++.|+.=|+..
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2334556667778899999999999887 4466 4888888889999999999999998887
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-06 Score=81.71 Aligned_cols=239 Identities=12% Similarity=0.066 Sum_probs=176.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHH
Q 044812 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231 (547)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~ 231 (547)
.+|-...-..+...+...|-...|..+|++. ..|..+|.+|+..|+..+|+....-.-+ .+|+...|..+.+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 3455555667788899999999999999986 5788889999999988885544443333 567888999999888
Q ss_pred HHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044812 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 232 ~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (547)
....-+++|.++.+....+ .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..+.++++.|
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 8888899999999876222 11122222334688888888888877765 55677888888888899999999
Q ss_pred HHHHhc-CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 312 RRVFED-SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 312 ~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
.+.|.. ....|| ...||.+-.+|.+.++-.+|...+.+..+.+. -+-..+...+....+.|.+++|.+.+.++....
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 998876 334565 45799999999999999999999999988763 334455556666788899999999988876543
Q ss_pred CCCCchhHHHHHHHHhH
Q 044812 390 RIKPTTEICACVVDMLG 406 (547)
Q Consensus 390 ~~~~~~~~~~~l~~~~~ 406 (547)
....|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 33335555555554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.7e-07 Score=71.41 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+.++++..+ +.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555553 34543 556788889999999999999987 4455 6679999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+|.++..+..++.++...|++++|++.++...+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-06 Score=78.32 Aligned_cols=249 Identities=12% Similarity=0.076 Sum_probs=184.2
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
..-+.+.|++.+|.-.|+...++ -+-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 45567889999999999877222 23356678888888888888889999998888876 5577788888888999999
Q ss_pred HHHHHHHHhcC-CCCC----------ChhhHHHHHHHHHhcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHhccCcH
Q 044812 308 LDCARRVFEDS-SFNK----------DAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLI 375 (547)
Q Consensus 308 ~~~A~~~~~~~-~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~ 375 (547)
-..|...++.- ...| +...-+. ..+..........++|-++ ...+..+|......|.-.|-..|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988751 0000 1000000 1111222233444555555 4445457888888888889999999
Q ss_pred HHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 376 NEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
++|...|+.+.. ++| |..+||.|...+....+.++|+..|++. .++|+-+ ....|.-+|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999984 466 7889999999999999999999999987 7888755 778899999999999999999999
Q ss_pred HHhhCCC----------CCchHHHHHHHHHcCCCHHHHHHHH
Q 044812 453 LIQLEPE----------NPSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 453 ~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
++.+.+. +..+|..|=.++.-.++.|-+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 8876432 1246777777777777777555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-05 Score=67.70 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=116.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (547)
..+-..+...|+-+....+....... .+-|......++....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44556667777777777766664432 122444555577778888888888888888864 336688888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 408 AGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++.......+.+..+-..|..+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888888766 3444 455778888888888888888888888888777788888888888888888888888765
Q ss_pred H
Q 044812 486 M 486 (547)
Q Consensus 486 ~ 486 (547)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00014 Score=62.30 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCc
Q 044812 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR----SGL 374 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~ 374 (547)
...|+..|++++|++..+... .... ...=+..+.+..+++-|...+++|.+- -+..|.+.|..++.+ .++
T Consensus 115 a~i~~~~~~~deAl~~~~~~~-~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE-NLEA--AALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 444556666666666665522 2221 111222334445555666666666542 234455545444332 234
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNS-EMQDLAYK 451 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 451 (547)
+.+|.-+|+++.++ .+|+..+.+-...++...|++++|..++++. ....++.++..++.+-...|.. +...+.+.
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 55555555555432 3455555555555555555555555555544 2222344444444433333332 33334444
Q ss_pred HHHhhCCC
Q 044812 452 SLIQLEPE 459 (547)
Q Consensus 452 ~~~~~~~~ 459 (547)
++....|.
T Consensus 267 QLk~~~p~ 274 (299)
T KOG3081|consen 267 QLKLSHPE 274 (299)
T ss_pred HHHhcCCc
Confidence 44444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.9e-05 Score=69.54 Aligned_cols=214 Identities=11% Similarity=0.040 Sum_probs=128.2
Q ss_pred CCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCCh--HHHHH
Q 044812 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-SLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKG--HEAVL 345 (547)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~--~~a~~ 345 (547)
+..+.|......+++.. +-+..+|+....++...| ++++++..++++ .. +.+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444433 223334444444444455 456666666552 11 23344555544444444542 56677
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc---CC----HHHHHHHH
Q 044812 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA---GQ----LDRALDFI 418 (547)
Q Consensus 346 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~ 418 (547)
+++++.+... -|...|....-++...|+++++++.++++++. . .-+...|+.....+.+. |. .++++++.
T Consensus 130 ~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 7777776532 25667777667777777888888888888764 2 23555565555444443 22 24566666
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC-----------------
Q 044812 419 KTM-PVEP-SPSIWGALVSASVMH----GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR----------------- 475 (547)
Q Consensus 419 ~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------- 475 (547)
.++ ...| |...|+.+...+... ++..+|.+.+.++.+.+|.++.+...|++.|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 443 4445 456788777777763 44566888888888888888888999999998642
Q ss_pred -CHHHHHHHHHHHH
Q 044812 476 -RWDAVAELRTMMK 488 (547)
Q Consensus 476 -~~~~A~~~~~~m~ 488 (547)
..++|.++++.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 3467888888873
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=80.82 Aligned_cols=159 Identities=9% Similarity=0.032 Sum_probs=113.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICA 399 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 399 (547)
.+...+-.|.....+.|.+++|..+|+...+ +.|+ ......+...+.+.+++++|...+++.... .| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 3466777788888888888888888888887 4665 455666777788888888888888888753 44 566677
Q ss_pred HHHHHhHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTMP-VEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
.+..++.+.|++++|..+|++.- ..|+ ..++..+..++...|+.++|...|+++.+...+-...|+.++ ++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHH
Confidence 77888888888888888888872 3444 568888888888888888888888888887644434444332 223
Q ss_pred HHHHHHHHHHHhCC
Q 044812 478 DAVAELRTMMKDRG 491 (547)
Q Consensus 478 ~~A~~~~~~m~~~~ 491 (547)
..-...++++.-.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (694)
T PRK15179 233 NADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHcCccc
Confidence 33444555554333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-05 Score=70.39 Aligned_cols=183 Identities=13% Similarity=-0.009 Sum_probs=126.0
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChh----hH
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-H-DVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAI----TW 327 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~ 327 (547)
.....+......+...|+++.|...++.+...... | ....+..+..++...|++++|...+++. ...|+.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567788888999999999999999999876521 1 1246677899999999999999999873 2233222 35
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 328 SSIVSGYGLH--------GKGHEAVLLYNKMVCLGSKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 328 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
..+..++... |++++|.+.++++.+. .|+.. ....+..... . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HHH
Confidence 5555666554 7789999999999875 45432 2222211100 0 0000 0 111
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM----PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
..+...|.+.|++++|...+++. +..| ....+..++.++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667788999999999998876 2233 345888899999999999999998888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-05 Score=66.30 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 044812 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGAL 433 (547)
Q Consensus 356 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 433 (547)
.|+......+-..+...|+-+....+...... ..+.+.......+....+.|++.+|...+++. .-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433336666677888888888888877643 22446677777899999999999999999998 445688899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
..+|.+.|+.+.|...|.+++++.|.++...+.|+..|.-.|+.+.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999876654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.003 Score=63.62 Aligned_cols=415 Identities=15% Similarity=0.130 Sum_probs=216.1
Q ss_pred hcCCchhHHHHhccCCCC-CcchHHHHHHHH--HhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHH
Q 044812 67 LCGQPTQSQLVFNSIQHK-DVYLYNSLINGY--VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143 (547)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~-~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 143 (547)
.++++..|.+...++.+. ....|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 446777777777766442 223455555554 4667888888777777655444 667777777778888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChH----HHHHHhccCCCCChhhHHHHHHHHHcCCCchhH------HHHHHHH
Q 044812 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFS----ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV------VRSRRVF 213 (547)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a------~~a~~~~ 213 (547)
|+...+. .|+......+..+|.+.+++. .|+++++...++--.-|+.+--........+.+ .-|.+.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 8877654 344555556666777766553 466666655554444444332222222222221 1134444
Q ss_pred hhcCCCC-----hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 214 DQMKRRN-----VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 214 ~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
+.+.+.+ ..-.-.-...+...|++++|++++..-....-...+...-+.-+..+...+++.+..++-.++...|-
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 4443322 11111122345567889999999843313333344555555667777888888888888888888773
Q ss_pred CCchhHHHHHHHHHH----------------hcCCHHHHHHHHhc-CCC-CCChhh-HHHHHHHHHhcCChHHHHHHHHH
Q 044812 289 NHDVSLCNALIDMYS----------------KCGSLDCARRVFED-SSF-NKDAIT-WSSIVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 289 ~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~-~~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~ 349 (547)
. | |...++.+. ..+..+...+..++ .+. ..++.. +--+..-+..-|+.+++...|-+
T Consensus 258 D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 258 D-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred c-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 2 2 222222111 12223333333222 221 122221 11122223345777776654433
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh-------HHHHHHHHhHhcCC-----HHHHHHH
Q 044812 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE-------ICACVVDMLGRAGQ-----LDRALDF 417 (547)
Q Consensus 350 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~A~~~ 417 (547)
-. |-+|- |..=+..|...=..+.-..++..... ..++.. -+...+..-.-.|. -+.-..+
T Consensus 334 kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 334 KF--GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred Hh--CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 22 22221 11111111111112222222222211 111111 01111111111121 1112222
Q ss_pred HHhC------C------CCCC---------HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 418 IKTM------P------VEPS---------PSIWGALVSASVMHGNS---EMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 418 ~~~~------~------~~p~---------~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
+.+. + .-|. ..+-+.|+..+.+.++. -+|+-+++.....+|.|..+-..|+++|.-
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 2111 0 1111 12446677888888774 466777888888889898888899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCccCC
Q 044812 474 SRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
.|-+..|.++++.+.-+.|..+.
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhcc
Confidence 99999999999998777776544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00017 Score=61.72 Aligned_cols=245 Identities=9% Similarity=0.012 Sum_probs=155.3
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
++-+.-.|.+..++..-... ... +.+...-..+-++|...|.+.....-. .... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~-~~~--~~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKF-SSS--KTDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhh-ccc--cchhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcch
Confidence 44555567777777666554 222 234444444555666666554332211 1111 2333333333333333444
Q ss_pred HHHHHHHHhc-C---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 308 LDCARRVFED-S---SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 308 ~~~A~~~~~~-~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
.+.-..-+.+ + ....+......-...|+..|++++|++...... +......=...+.+..+++-|...++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222 1 112232223333456889999999999887621 22333333445677888999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 384 SVINTYRIKPTTEICACVVDMLGR----AGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
+|..- .+-.+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99642 345566666666654 45799999999999 367899999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCCHHHH-HHHHHHHHh
Q 044812 458 PENPSNYVSLSNLYASSRRWDAV-AELRTMMKD 489 (547)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 489 (547)
+.+|.+...++-+-...|+-.++ .+.+..++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999988888888876554 445555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6e-05 Score=64.60 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=115.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
+-.|...|+++.+....+... .|. ..+...++.+++...++...+.. +.|...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 446777888877655544322 121 01223566778888888777753 44688899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHh-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDML-GRAGQ--LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
...|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987542 33677888888864 67777 59999999987 4455 5668889999999999999999999999
Q ss_pred HhhCCCCCchHH
Q 044812 454 IQLEPENPSNYV 465 (547)
Q Consensus 454 ~~~~~~~~~~~~ 465 (547)
++..|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=6e-06 Score=66.47 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=73.3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+......+...+...|++++|.+.++.. ...| +...|..+..++...|+++.|...++++.+.+|.++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444556667777778888888887776 3334 5567777777888888888888888888888888888888888888
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 88888888888887776543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-05 Score=63.38 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=83.6
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+....-.+...+...|++++|..+|+-. ...| +..-|..|.-++...|++++|+..|.++..++|++|..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444445666778899999999999987 4455 5568888999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 044812 472 ASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~ 489 (547)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=76.54 Aligned_cols=227 Identities=12% Similarity=0.167 Sum_probs=167.8
Q ss_pred ChHHHHhHHHHhhccCCchhHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-hhhHHHH
Q 044812 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNH---DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD-AITWSSI 330 (547)
Q Consensus 256 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l 330 (547)
....|...|.-....++.+.|+++.+++... ++.- -..+|.++++.-..-|.-+...++|++..---| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455666677777778888888887777642 2211 234677788877778888889999988542334 3458899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
...|.+.+++++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++.+...-.-........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999887 34567889999999999999999999999988642111135556667777789999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCch-HHHHHHHHHcCCCHHHHHHH
Q 044812 411 LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PENPSN-YVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+++..+|+.. .-.| -...|+.++..-.++|+.+.+..+|++++.+. |..... |...+..-.+.|+-+.+..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99999999987 3234 45689999999999999999999999999876 444443 34444444445665444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=74.67 Aligned_cols=122 Identities=10% Similarity=0.135 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
...|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667778888888888888755 344 4445777777788888888888776 3234 56677777788889
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00033 Score=72.36 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.+..+..+|-+.|+.++|...+++. .. ..|+...|.+...|... +.++|..++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 4444555555555555555555541 11 23344455555555555 555555555544332 333
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
.+++..+.++|.++... .+.+...+-.+...... ..+..--..++..+-..|...++++++..+++
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~------------~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLG------------HREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHh------------hhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34555555555555432 11122222222211111 11122234455556667777778888888888
Q ss_pred HHHhhCCCCCchHHHHHHHHH
Q 044812 452 SLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~ 472 (547)
.+++.+|.|..+..-++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 888888888777777777776
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-05 Score=79.30 Aligned_cols=249 Identities=12% Similarity=0.110 Sum_probs=116.7
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.+...+..|+..+...+++++|.++.+.. .. ..|+... |..+...+.+.++...+..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~-l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEH-LK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHH-HH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 45667778888888888888888888755 22 2333221 11111123333332222111 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 298 LIDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
++.......++.....+...++- .-+...+..+..+|-+.|+.++|..+|+++.+.. +-|....+.+...+... +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22222222222222222222221 1122244445555555555555555555555543 22344455555555544 555
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
+|.+++.+.... |...+++.++.+++.++ ...|+.. +.-.++.+++..
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~---------------d~f~~i~~ki~~ 215 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDF---------------DFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccc---------------hHHHHHHHHHHh
Confidence 555555544332 23334445555555444 2222211 111111111111
Q ss_pred h-C-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHH
Q 044812 456 L-E-PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525 (547)
Q Consensus 456 ~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (547)
. + ..-..++.-+-..|...++|+++..+++.+.+..-.... ...+.+.++...|..|+..++.++
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~-----a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK-----AREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh-----hHHHHHHHHHHHccCcchHHHHHH
Confidence 1 0 111234555667788889999999999999876543222 133444555566666766554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.8e-05 Score=69.86 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=75.6
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 446 (547)
....|+++.|+..++.+.+. .+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+..+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34456677777777776653 2334555555666677777777777777765 44555 44556666777777777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
+..+++....+|+++..|..|+++|...|+..+|..-..++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777776666655555554444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00021 Score=60.81 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV-LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
|..++-+....|+.+.|...++.+.+.- |...-...+ ..-+...|++++|+++++.+.++. +.|..++-.-+-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 3333444445555555666665555542 322211111 112334455566666666555441 22444444444444
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC---CHHHH
Q 044812 406 GRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR---RWDAV 480 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 480 (547)
...|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-++++++=..|.++..|..+++.+.-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455544555444443 233455566666666666666666666666666666666665666665554443 34445
Q ss_pred HHHHHHHHhCC
Q 044812 481 AELRTMMKDRG 491 (547)
Q Consensus 481 ~~~~~~m~~~~ 491 (547)
.+++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 55555554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00028 Score=72.07 Aligned_cols=157 Identities=10% Similarity=-0.016 Sum_probs=124.7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVG 364 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ 364 (547)
.+.+...+..|.....+.|.+++|..+++. ..+.|+. .....++..+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688899999999999999999999987 4556664 46777889999999999999999999986 454 566777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGN 442 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 442 (547)
+..++...|++++|..+|+++... .+-+..++..+..++...|+.++|...|++. ...|....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HH
Confidence 788899999999999999999863 2345788889999999999999999999987 3345555555444 34
Q ss_pred HHHHHHHHHHHH
Q 044812 443 SEMQDLAYKSLI 454 (547)
Q Consensus 443 ~~~a~~~~~~~~ 454 (547)
...-..+++++.
T Consensus 232 ~~~~~~~~~~~~ 243 (694)
T PRK15179 232 LNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHcC
Confidence 444455565553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00057 Score=63.94 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDM 404 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 404 (547)
+.-....+...|++++|+..+..++.. .|+ ..........+...++.++|.+.++++... .|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333444566789999999999998886 554 555556667789999999999999999854 565 5666678899
Q ss_pred hHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH
Q 044812 405 LGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
|.+.|++.+|..++++. ..+-|+..|..|..+|...|+..++... .++.|...|+++.|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHH
Confidence 99999999999999987 3344778999999999999998776554 4567888899999999
Q ss_pred HHHHHHhCC
Q 044812 483 LRTMMKDRG 491 (547)
Q Consensus 483 ~~~~m~~~~ 491 (547)
.+...++..
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 999887665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00042 Score=64.03 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=137.2
Q ss_pred HHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044812 298 LIDMYSKCGSLDCARRVFED-SSFNKD-AITWSSIVSGYGLHG-KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 374 (547)
+-..+...+..++|+.+..+ +.+.|+ ..+|+.-...+...| ++++++..++++.+...+ +..+++.-...+.+.|.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 33344556778888888876 233454 445776666666777 579999999999886433 34455544444445554
Q ss_pred --HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CC----H
Q 044812 375 --INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH---GN----S 443 (547)
Q Consensus 375 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~----~ 443 (547)
.+++..+++++.+.. +-+..+|+.....+.+.|+++++++.++++ ...| +...|+.....+.+. |. .
T Consensus 122 ~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 367888888887542 347888988888999999999999999998 3333 566787777666554 22 2
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcC----CCHHHHHHHHHHHHhCC
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASS----RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~ 491 (547)
+..+....++++.+|.|..+|..+..++... ++..+|.+.+.+..+.+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 5678888899999999999999999999883 45567888887765543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=49.83 Aligned_cols=35 Identities=43% Similarity=0.638 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCc
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 121 (547)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999998988873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.3e-05 Score=60.12 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC
Q 044812 346 LYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV 423 (547)
Q Consensus 346 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 423 (547)
.+++.... .|+ ......+...+...|++++|.+.++.+.... +.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444443 443 3455666777888899999999999887642 447788888889999999999999998876 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 424 EP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 424 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.| +...+..+..++...|+.++|...|+++.+..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 566888888899999999999999999999998776533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0073 Score=57.44 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=136.0
Q ss_pred HHHHHHHHHHchhcCCCCCChHHHHhHHHHhhcc---CCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044812 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL---IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313 (547)
Q Consensus 237 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (547)
.+++..+++.. ...-..-+..+|..+..---.. ...+....+++.+...-..--.-+|..+++.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~-I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERA-IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 56777777766 3433444556666555433222 2367777777777765433334567778888888888999999
Q ss_pred HHhcCC---CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 314 VFEDSS---FNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 314 ~~~~~~---~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
+|.+.. ..+ ++..+++++.-||. ++.+-|.++|+--.+. ..-+..-....+..+...++-..+..+|++....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s- 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS- 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-
Confidence 997632 223 67778888887765 6678889998875554 2223344456677778888888999999999876
Q ss_pred CCCCc--hhHHHHHHHHhHhcCCHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHHcCCHH
Q 044812 390 RIKPT--TEICACVVDMLGRAGQLDRALDFIKTM----P--VEPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 390 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~ 444 (547)
++.|+ ..+|..+++--..-|++..+.++-+++ + ..+....-..+++-|.-.+...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 66664 578999999888899999998887765 2 2222233344555555555433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.4e-06 Score=48.85 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 119 (547)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.6e-05 Score=60.08 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=60.8
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEM 445 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 445 (547)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555566666666655432211 1222333445556666666666666655 111222 233345556666666666
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
|+..++.. ...+..+..+...+++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666542 22233445566666777777777777766654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-06 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 358 (547)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.2e-06 Score=60.68 Aligned_cols=78 Identities=14% Similarity=0.274 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 408 AGQLDRALDFIKTM-PVEP---SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1122 344455567777777777777777777 555555556666667777777777777777
Q ss_pred HHH
Q 044812 484 RTM 486 (547)
Q Consensus 484 ~~~ 486 (547)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.2e-05 Score=70.41 Aligned_cols=125 Identities=15% Similarity=0.213 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC
Q 044812 57 VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136 (547)
Q Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 136 (547)
....|+..+...++++.|+.+|+++.+.++.....+++.+...++..+|++++++..+.. +-+......-...+...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334555566667888888888888887666667777888888888888888888887642 2244455555666788888
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 044812 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183 (547)
Q Consensus 137 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 183 (547)
++.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888764 4455688888888888888888888888776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=57.56 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=50.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVS 435 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 435 (547)
+..+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|++++|...++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444445555555666655555554321101 1223344555555555555555555544 11222 234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
++...|+.++|...++++++..|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 5555666666666666666665555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.04 E-value=6e-05 Score=56.08 Aligned_cols=93 Identities=18% Similarity=0.307 Sum_probs=74.1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 33343 3567778888888899999999999998888888888888999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 044812 476 RWDAVAELRTMMKDR 490 (547)
Q Consensus 476 ~~~~A~~~~~~m~~~ 490 (547)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888877543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.3e-05 Score=58.19 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=81.5
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHH
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSL 467 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 467 (547)
.++..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45666788889999999999999987 22343 3467778999999999999999999999988765 5678899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 468 SNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.6e-06 Score=46.92 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 357 (547)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00051 Score=55.81 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT--TEICACV 401 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 401 (547)
.|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|. ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 345555555 37778888888888877632211 223334456677888999999999888765 32222 2234456
Q ss_pred HHHhHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
...+...|++++|+..++..+.. .....+...+.++...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888889999999998776322 34456777788889999999999988875
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.015 Score=55.44 Aligned_cols=148 Identities=5% Similarity=0.051 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHH
Q 044812 340 GHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 340 ~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
.+.....+.++... ...| ..+|..+++.--+..-+..|..+|.++.+. +..+ ++.++++++.-|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 55666677766554 2333 356778888888888899999999999887 5555 7788888888665 4788999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 418 IKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLE--P-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 418 ~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
|+-- ..-+|. .--...+.-+...++-..+..+|++++... | ....+|..++..-..-|+...+.++-+++...
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9853 333444 444667777888999999999999998762 2 23468999999999999999999998887643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=54.44 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR-RWDAVAELRTMMKD 489 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 489 (547)
++.+|..++..+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999988765
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00067 Score=57.81 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=118.8
Q ss_pred cCChHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH
Q 044812 337 HGKGHEAVLLYNKMVCL---G-SKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (547)
..+.++.++++.++... | ..|+.. .|..+.-+....|+.+.|...++.+..++ +-+..+-..-.-.+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 34567777777776532 4 556654 45666777788899999999999997764 22333333334445678999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++|.++++.. ...| |..++---+......|+.-+|++-+...++.-+.|..+|..|.+.|...|+++.|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999987 3334 6667877777788889999999999999999999999999999999999999999999999875
Q ss_pred C
Q 044812 490 R 490 (547)
Q Consensus 490 ~ 490 (547)
.
T Consensus 183 ~ 183 (289)
T KOG3060|consen 183 I 183 (289)
T ss_pred c
Confidence 4
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.7e-05 Score=65.16 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=79.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSE 444 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~ 444 (547)
-+.+.+++.+|+..|.+.++ +.| |.+.|..-..+|.+.|.++.|++-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 35667788888888888774 355 6667777778888888888888777765 5566544 8888888888888888
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
+|++.|+++++++|++......|-.+-.+.+..+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888766666655554444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=3e-05 Score=52.96 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=47.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...+...|++++|++.|+++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888888888888888888887654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00029 Score=66.69 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
..+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666431 224555556666666666666666666655 3334 3445666666666666666
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
+|+..|+++++++|.++.....+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6666666666666666555444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.027 Score=52.61 Aligned_cols=441 Identities=12% Similarity=0.058 Sum_probs=229.2
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCCchhHHHHhccCCC-CCcchHHHHHHHH--Hhc
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISN------PFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGY--VKN 99 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~ 99 (547)
.|.+.+++.++..+|..+.+.. ..+ ....+.++++|.. .+.+..........+ -....|-.+..++ -+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 5677889999999998887764 223 2234567777765 455555555544433 1133455555443 467
Q ss_pred CChhHHHHHHHHhhhC--CCCC------------CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCC----CchhHHHH
Q 044812 100 HGHNEALELFSNMYYS--NVSP------------DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV----VDVILANS 161 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 161 (547)
+.+++|++.+..-... +-.| |...=++.+.++...|++.+++.+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998888776654 2222 1111244566778888888888888887665433 67778887
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC--CCHHH
Q 044812 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN--GDLDE 239 (547)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~ 239 (547)
++-.++++=-.+. -+.+...=...|--++-.|.+.-..-+ +. -+.+. .|.......++....-. .+..-
T Consensus 173 ~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d---~~-~Y~k~-~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 173 AVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFD---QR-PYEKF-IPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHh---hc-hHHhh-CcHHHHHHHHHHHHHhCCHhhccH
Confidence 6666655322111 111111111123333333322111000 00 00000 11222222222222211 11222
Q ss_pred HHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHHHHHHH
Q 044812 240 ALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 240 A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
-++++..- ++.-+.|+... ...+.....+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.
T Consensus 244 ~mq~l~~W-e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 244 LMQILENW-ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred HHHHHHHH-HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22233222 33345565432 2223333332 4444444444333322111 234667777777888888888777
Q ss_pred HhcCC-CCCChhh-------HHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHhccCc-HHHH
Q 044812 315 FEDSS-FNKDAIT-------WSSIVSGYG----LHGKGHEAVLLYNKMVCLGSKPDIITIVGVL---SACGRSGL-INEG 378 (547)
Q Consensus 315 ~~~~~-~~~~~~~-------~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~---~~~~~~g~-~~~a 378 (547)
+.-+. ..|+... -..+-+..+ ..-+...=+.+|.......+.-.. ....|+ .-+-+.|. -++|
T Consensus 321 l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 321 LALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHH
Confidence 65321 1232221 111112222 111233345566666554332211 111222 22445555 7888
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHH----HhHhc---CCH---HHHHHHHHhCCCCC----CHHHHHHHHHH--HHHcC
Q 044812 379 LEIYNSVINTYRIKP-TTEICACVVD----MLGRA---GQL---DRALDFIKTMPVEP----SPSIWGALVSA--SVMHG 441 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~-~~~~~~~l~~----~~~~~---g~~---~~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~~ 441 (547)
.++++.+.+ +.+ |...-|.+.. .|... ..+ -.-..++++.++.| +...-|.|..| +...|
T Consensus 400 lnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 400 LNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 999888764 334 4444333322 22211 112 22333445555555 34455666554 56889
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++.++.-.-.-+.+..| ++.+|..++-++....++++|.++++.+.
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999998888889999 89999999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=59.08 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=63.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
..+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666667777777766655 21221 34677777788888888888888888888888877778788888
Q ss_pred HHcCCC--------------HHHHHHHHHHHHh
Q 044812 471 YASSRR--------------WDAVAELRTMMKD 489 (547)
Q Consensus 471 ~~~~g~--------------~~~A~~~~~~m~~ 489 (547)
+...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 877666 4556666655544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=65.50 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=77.7
Q ss_pred CCChhhHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHHH
Q 044812 321 NKDAITWSSIVSGYGL--HG---KGHEAVLLYNKMVCLGSKPDI-ITIVGVLSACGRS--------GLINEGLEIYNSVI 386 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 386 (547)
..|...|...+++... .+ +...|..+|++..+. .|+. ..+..+..++... .++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566778777776433 22 366788888888874 5653 3333333222111 11223333333322
Q ss_pred HhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
.......+...|..+.-.....|++++|...+++. ...|+...|..++..+...|+.++|.+.++++.+++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21012224455555555555566777777776665 44566666666666666777777777777777776666553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0055 Score=56.19 Aligned_cols=129 Identities=9% Similarity=0.082 Sum_probs=69.5
Q ss_pred HHHHHHhc-CCHHHHHHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-H
Q 044812 298 LIDMYSKC-GSLDCARRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-----PDII-T 361 (547)
Q Consensus 298 l~~~~~~~-g~~~~A~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~ 361 (547)
+...|... |+++.|++.|++ -+ .+. ...+..+...+.+.|++++|.++|++....-.. .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 44445555 566666666553 22 111 223556667788888888888888887654322 1222 2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhc-CCCCc--hhHHHHHHHHhHh--cCCHHHHHHHHHhCCCCCCHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTY-RIKPT--TEICACVVDMLGR--AGQLDRALDFIKTMPVEPSPS 428 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~ 428 (547)
|...+-++...|+...|.+.+++..... ++..+ ......|+.++-. ...+++|+.-|+.+. +.|..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 2333445666788888888888775331 22222 3445566676654 335777777777774 34444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=43.42 Aligned_cols=31 Identities=45% Similarity=0.656 Sum_probs=23.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNV 117 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 117 (547)
.+||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00036 Score=58.42 Aligned_cols=94 Identities=10% Similarity=-0.037 Sum_probs=74.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
....+..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556667777778888999998888876 22232 347888999999999999999999999999998888888888
Q ss_pred HHHH-------cCCCHHHHHHHHHHH
Q 044812 469 NLYA-------SSRRWDAVAELRTMM 487 (547)
Q Consensus 469 ~~~~-------~~g~~~~A~~~~~~m 487 (547)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.036 Score=51.21 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+-.. . -++..|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence 33444555666777777777777777 57777777778888888887766654332 1 12366777777777777
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+..+|..+...+ + +..-+..|.++|++.+|.+.--+.
T Consensus 252 ~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777766642 1 123456677777777776665554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0028 Score=58.13 Aligned_cols=135 Identities=12% Similarity=0.245 Sum_probs=69.9
Q ss_pred HHHHHHHhc-CChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCH
Q 044812 161 SLMSMYVKC-GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDL 237 (547)
Q Consensus 161 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~ 237 (547)
.+...|... |++++|++.|++ |.++|..-..+ -...+..++..+.+.|++
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~---------------------------A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQK---------------------------AAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHH---------------------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 344455555 677777777665 55555555433 234566788889999999
Q ss_pred HHHHHHHHHchhcCCCCC-----ChH-HHHhHHHHhhccCCchhHHHHHHHHHHcC--CCCc--hhHHHHHHHHHHh--c
Q 044812 238 DEALVLFLEMQLKDRIEP-----NKV-SLVSVLPTCSSLIGLSGGKQIHGFAIRKE--LNHD--VSLCNALIDMYSK--C 305 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~ 305 (547)
++|+++|++. ....... +.. .+...+-++...||...|...++...... +..+ ......|+.++-. .
T Consensus 172 ~~A~~~~e~~-~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 172 EEAIEIYEEV-AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHH-HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHH-HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 9999999887 4432221 111 22223334455566666666666655432 1111 2233445555443 2
Q ss_pred CCHHHHHHHHhcCCCCCCh
Q 044812 306 GSLDCARRVFEDSSFNKDA 324 (547)
Q Consensus 306 g~~~~A~~~~~~~~~~~~~ 324 (547)
..++.+..-|+.+. +.|.
T Consensus 251 e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 251 EAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp CCHHHHCHHHTTSS----H
T ss_pred HHHHHHHHHHcccC-ccHH
Confidence 33555555555555 4443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=52.89 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++.+..|.. .....+..++.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555543211112233333455555555555555555543222222 233334455555555555555554
Q ss_pred H
Q 044812 452 S 452 (547)
Q Consensus 452 ~ 452 (547)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0018 Score=54.45 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACV 401 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 401 (547)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3456666666677777777777777665432222 345666666667777777777777766543 23 34445555
Q ss_pred HHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
...+...|+...+..-++.. ...+++|.++++++.+.+|++ +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 55555555554443222211 112577888888888888876 545555444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.004 Score=50.50 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-CCC---CHHHH
Q 044812 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-VEP---SPSIW 430 (547)
Q Consensus 355 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 430 (547)
..|+...-..|..+....|+..+|...|++.... -+.-|......+.++....+++..|...++++. -.| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778888999999999999999988753 334578888888899999999999999998862 112 22334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
..+...+...|++..|+..|+.+....| .+..-......+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5577889999999999999999999888 4677788889999999988887766665543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00078 Score=63.80 Aligned_cols=101 Identities=15% Similarity=0.060 Sum_probs=81.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhc
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRA 408 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 408 (547)
....+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++++.+. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999863 235778888888999999999999999999864 44 677888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 044812 409 GQLDRALDFIKTM-PVEPSPSIWGALV 434 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 434 (547)
|++++|...|++. ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999987 5566555444333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.9e-05 Score=42.74 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 355 (547)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677778888888888888888887777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0013 Score=58.14 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCCchHHH
Q 044812 392 KPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMH---GNSEMQDLAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (547)
+-|...|-.|...|...|++..|..-|.+. .+. +++..+..+..++... ....++..+|+++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 448999999999999999999999999887 333 4566777777765543 35788999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCccCC
Q 044812 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
|+..+...|++.+|...|+.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00042 Score=51.10 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCcchHHHHHHHHccCC--------CcHHHHHHHHHHHHhCCCCchhHH
Q 044812 89 YNSLINGYVKNHGHNEALELFSNMYYSNV-SPDDFTLATISKLSGEIK--------DLNVGMLIHGLSIKIGFVVDVILA 159 (547)
Q Consensus 89 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 159 (547)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999998877653 234667889999999999999999
Q ss_pred HHHHHHHHh
Q 044812 160 NSLMSMYVK 168 (547)
Q Consensus 160 ~~l~~~~~~ 168 (547)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.6e-05 Score=52.16 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=45.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|++.|+++.+.+|.++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999899999999999999999999988776543
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=48.78 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=48.4
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
+...+.+.|++++|...|++. ...|+ ...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888899999988887 44564 55888888999999999999999999999988764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.074 Score=52.97 Aligned_cols=321 Identities=11% Similarity=0.016 Sum_probs=188.2
Q ss_pred HhCCCCchhHHH-----HHHHHHHhcCChHHHHHHhccCCCCC---hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC--
Q 044812 149 KIGFVVDVILAN-----SLMSMYVKCGKFSECLNLFDEMPQRN---VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-- 218 (547)
Q Consensus 149 ~~g~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~-- 218 (547)
..|++.+..-|. .+++-+...+.+..|+++-..+..|- ...+..+...+.+..+..+-+-+..+-.++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 345665555443 34666777788888888887777654 44566666666666544433334444444444
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC----CChHHHHhHHHHhhccCCchhHHHHHHHHHHcC-------
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE----PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE------- 287 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 287 (547)
....+|..++......|+.+.|..+++.= ...+.+ .+-.-+..-+.-+...|+.+....++-.+..+-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E-~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELE-PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcC-CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888999999999888643 222211 122234455666777788777777766655431
Q ss_pred ----CCCchhHHHHHHH--------HHHhcCCHHHHHHHHhc-CC-----CCCChhhHHHHHHHHHhcCC----------
Q 044812 288 ----LNHDVSLCNALID--------MYSKCGSLDCARRVFED-SS-----FNKDAITWSSIVSGYGLHGK---------- 339 (547)
Q Consensus 288 ----~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~~-~~-----~~~~~~~~~~li~~~~~~~~---------- 339 (547)
.+.....|.-+++ .+...++-..+..-|.- -+ +.+-..........+.+...
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1222223332222 01112222222222211 00 01111111222333333322
Q ss_pred hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 044812 340 GHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418 (547)
Q Consensus 340 ~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 418 (547)
..+-+.+.+.+... |..-...+.+--+..+...|+..+|.++-++.. -||...|-.-+.+++..+++++-+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 11112222222221 222333445555666777888888888866653 578888888889999999999988888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 419 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+... .+.-|.-++.+|.+.|+.++|.+.+-+... +.....+|.+.|++.+|.+..-+
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8774 245577788999999999999988766422 22678899999999999887544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00019 Score=50.34 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=51.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|.+.+++++|.++++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999987654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00078 Score=63.90 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=87.6
Q ss_pred CCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhH
Q 044812 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITW 327 (547)
Q Consensus 253 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~ 327 (547)
.+.+...+..+++.+....+++.+..++-..... ....-..|..++++.|.+.|..+.++.+++. -|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4456666777777777777777777777776654 2223344556888888888888888888875 5677888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 372 (547)
|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887777666767766666665544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00078 Score=49.85 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGN 442 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 442 (547)
+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3344444555555555555554321 122344445555555556666666666554 2222 23455566666666666
Q ss_pred HHHHHHHHHHHHhhCC
Q 044812 443 SEMQDLAYKSLIQLEP 458 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~ 458 (547)
.+.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666665554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00061 Score=64.59 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=96.6
Q ss_pred hCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-C-----CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc
Q 044812 49 LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K-----DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122 (547)
Q Consensus 49 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 122 (547)
++.+.++.....+++.+....+.+.+..++-+... | -..+.+++++.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 44566777788888888888888888887776653 2 23456789999999999999999999999999999999
Q ss_pred hHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044812 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169 (547)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 169 (547)
|++.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888777666666666555555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.11 Score=52.90 Aligned_cols=119 Identities=8% Similarity=0.140 Sum_probs=69.4
Q ss_pred HHHHHHHHhccCcHH---HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLIN---EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV---EPSPSIWGALVS 435 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~l~~ 435 (547)
.+.|++.|-+.++.. +|+-+++...... +.|..+--.++..|.-.|-+..|.++|+.+.+ +.|..-|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 345666777776654 4445555444321 22444555677888888888888888888843 33433332 334
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+...|++..+...+......-..+..---.++..-.+.|.+....+.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEM 563 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHH
Confidence 556677888888888887776433322223334444455666555554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00025 Score=62.10 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=77.4
Q ss_pred HHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH
Q 044812 403 DMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 480 (547)
.-+.+.+++++|+..|.+. .+.| |.+.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456788999999999987 5666 6667788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044812 481 AELRTMMKD 489 (547)
Q Consensus 481 ~~~~~~m~~ 489 (547)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.036 Score=49.25 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=38.8
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-HH---HHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-VS---LVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
+...+-.....+...|++++|.+.|+.+ .. .-|+. .. ...+..++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l-~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEAL-DN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333444566667788888888888887 33 22222 11 2344455666666666666666666553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0055 Score=55.94 Aligned_cols=133 Identities=12% Similarity=0.124 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA-CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 457778888888888899999999888543 2233334333333 333567777999999988764 456777888888
Q ss_pred HhHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 404 MLGRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888999999999999886 222333 489999988889999999999999998887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0017 Score=48.00 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=57.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSG--------LINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.+... +++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 345556666888888888888888888 888888888888765432 344567778888766 7888888888
Q ss_pred HHHHHhHh
Q 044812 400 CVVDMLGR 407 (547)
Q Consensus 400 ~l~~~~~~ 407 (547)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.001 Score=60.65 Aligned_cols=129 Identities=9% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR-AGQLDRALDFIKTM--PVEPSPSIWGALVSA 436 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 436 (547)
.+|..+++..-+.+..+.|..+|.+..+.. ..+..+|-..+..-.+ .++.+.|..+|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888889999999999998542 2344555555555333 56777799999987 344577889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...|+.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998755443 58999999999999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.004 Score=57.08 Aligned_cols=164 Identities=8% Similarity=0.073 Sum_probs=110.1
Q ss_pred CChhhHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 322 KDAITWSSIV-SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA--CGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 322 ~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
|....|-.+- .++...|++++|..+--...+.. + ...+..++++ +-..++.+.|...|++.. .+.|+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~s 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKS 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhH
Confidence 3334444443 45667788888887766665532 2 1223333333 445677888888888776 445553322
Q ss_pred HH-------------HHHHhHhcCCHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 399 AC-------------VVDMLGRAGQLDRALDFIKTM-P-----VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 399 ~~-------------l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.. =..-..+.|++..|.+.+.+. . .+|+...|.....+..+.|+.++|+.--+++++++|.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 11 123345778888888888876 3 3345666777777778889999999998988888887
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
-...|..-+.++...++|++|.+-++...+..
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888888888899999988888765443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=51.53 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=75.6
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
...-+...|++++|..+|+-+ ... -+..-|..|..++-..+++++|+..|..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999876 222 355667888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 044812 479 AVAELRTMMKD 489 (547)
Q Consensus 479 ~A~~~~~~m~~ 489 (547)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0025 Score=51.95 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH-----hCCCccCCc
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK-----DRGLKKSPG 497 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 497 (547)
.....++..+...|+++.|..+.++++..+|.+...|..++.+|...|+..+|.++|+++. +.|+.|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3556677888899999999999999999999999999999999999999999999999873 468877764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.032 Score=49.59 Aligned_cols=176 Identities=9% Similarity=0.021 Sum_probs=102.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CCCCChh-h---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 297 ALIDMYSKCGSLDCARRVFEDS-SFNKDAI-T---WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.....+...|++++|.+.|++. ..-|+.. . .-.++.+|.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3445556678888888888763 1123322 1 234556777888888888888888775322122233333333221
Q ss_pred --c------------------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 044812 372 --S------------------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431 (547)
Q Consensus 372 --~------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 431 (547)
. ....+|...|+.+++++ |+. .-..+|...+..+...--. --.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~-~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAK-YEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHH-HHH
Confidence 1 11234555555555542 332 2223333333222100000 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+..-|.+.|.+..|..-++.+++.-|..+ .+...++.+|...|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 355668899999999999999999876654 4566788999999999999998876643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0033 Score=52.57 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044812 86 VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP--DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163 (547)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 163 (547)
...|..+...+...|++++|+..|+........| ...++..+..++...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666777788888888877776543222 12356667777777788888888777777653 23344455555
Q ss_pred HHHH-------hcCChHHHHHHhcc
Q 044812 164 SMYV-------KCGKFSECLNLFDE 181 (547)
Q Consensus 164 ~~~~-------~~g~~~~A~~~~~~ 181 (547)
.++. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66666655555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.17 Score=50.09 Aligned_cols=178 Identities=10% Similarity=-0.013 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC-CCcchHHHHHHHHH----------hcCChhHHHHHHHHhhhCCCCCC
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGYV----------KNHGHNEALELFSNMYYSNVSPD 120 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~----------~~~~~~~A~~~~~~m~~~~~~p~ 120 (547)
.|.+..|..|.......-.++.|+..|-+... +.+..-..|-..+. --|++++|.++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 57777887777777777777777777766544 22211111111111 13667777777766655432
Q ss_pred cchHHHHHHHHccCCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHc
Q 044812 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKI-GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199 (547)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 199 (547)
.+....+.|++-.+.++++.--.. +-..-...++.+...+.....|++|.+.+..-... ...+.++.+
T Consensus 766 ------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~ 834 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYR 834 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHH
Confidence 244455556665555544321000 00011235566666666666666666666543211 112333333
Q ss_pred CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 200 ~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..++++ ...+...++ .+....-.+..++...|.-++|.+.|-+.
T Consensus 835 le~f~~---LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 835 LELFGE---LEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHhhhh---HHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 333333 222222222 24444555666666666666666666443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.01 Score=58.87 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhc--------CCHHHHHHHHH
Q 044812 354 GSKPDIITIVGVLSACGR--S---GLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRA--------GQLDRALDFIK 419 (547)
Q Consensus 354 g~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 419 (547)
+.+.|...|...+++... . +....|..+|++..+. .|+ ...|..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356678888888887433 2 3477899999999865 665 44455444433222 12345555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 420 TM---P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 420 ~~---~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
+. + ...+...|..+.-.+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1 233557788887777788999999999999999999 578999999999999999999999999876654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0021 Score=57.45 Aligned_cols=84 Identities=8% Similarity=0.067 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHcCCCH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYASSRRW 477 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 477 (547)
.+.|++++|...|+.+ ...|+. ..+..++.+|...|++++|...|+.+++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4445555555555554 222322 344556666666666666666666666665543 33444455666666667
Q ss_pred HHHHHHHHHHHh
Q 044812 478 DAVAELRTMMKD 489 (547)
Q Consensus 478 ~~A~~~~~~m~~ 489 (547)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 777766666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0043 Score=47.77 Aligned_cols=57 Identities=16% Similarity=-0.021 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPE---NPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
.+-.+...+...|++++|+.++++.....|+ +......++.++...|+.++|++.+-
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3334445555555555555555555544444 33334444445555555555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00066 Score=46.89 Aligned_cols=65 Identities=15% Similarity=0.292 Sum_probs=50.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 458 (547)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777788888888888888776 3445 4557888888888888 68899999998888876
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00029 Score=48.54 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=28.7
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS 428 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 428 (547)
..|++++|.++|+++.... +-+...+..++.+|.+.|++++|..+++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3455666666666655431 224445555555555555555555555555 2334433
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0081 Score=55.09 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=29.0
Q ss_pred HccCCCcHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCChHHHHHHh
Q 044812 131 SGEIKDLNVGMLIHGLSIKIGFVVDV----ILANSLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~ 179 (547)
+++.|+......+|+..++.|-. |. .+|..|.++|.-.+++++|++.-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 45666666666666666666522 32 34556666677777777776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00019 Score=41.00 Aligned_cols=34 Identities=32% Similarity=0.642 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH
Q 044812 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
+|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.011 Score=47.26 Aligned_cols=106 Identities=9% Similarity=-0.048 Sum_probs=55.3
Q ss_pred HHHHHhhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 209 SRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 209 a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
.+..+..+. +.+......+...+...|++++|.++|+-. -. +.|
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L-~~--~Dp-------------------------------- 66 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLL-TI--YDA-------------------------------- 66 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCc--------------------------------
Confidence 344444444 444455555566666777777777777665 22 222
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
.+..-|..|.-++-..|++++|+..|.. +. +-|+..+-.+..++...|+.+.|.+.|+..+.
T Consensus 67 --~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 67 --WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred --ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233344455555555555555555554 22 23344455555555555666666555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=53.88 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=64.7
Q ss_pred CCCcchHHHHHHHHHhc-----CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC----------------CcHHHH
Q 044812 83 HKDVYLYNSLINGYVKN-----HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK----------------DLNVGM 141 (547)
Q Consensus 83 ~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~ 141 (547)
..+-.+|..++..+.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34555666666666543 455556666777777777777788888777765422 456788
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044812 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGK 171 (547)
Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 171 (547)
+++++|...|+-||..++..|++.|++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00071 Score=41.60 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
.+|..+..+|...|++++|+++|+++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999998888764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.2 Score=47.07 Aligned_cols=382 Identities=10% Similarity=0.062 Sum_probs=194.5
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCCchhHHHHhccCCC------------------CCcchHHHHH
Q 044812 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITA--YALCGQPTQSQLVFNSIQH------------------KDVYLYNSLI 93 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~ll 93 (547)
.+++.....+....+.. | ...|-.|..+ +-+.+.+.+|.+.+..... ++...-+..+
T Consensus 59 ~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a 135 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEA 135 (549)
T ss_pred hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHH
Confidence 34555555555555542 3 2333444443 3467899999988865432 2223345667
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCC----CCCcchHHHHHHHHccC--------CC-------cHHHHHHHHHHHHh----
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNV----SPDDFTLATISKLSGEI--------KD-------LNVGMLIHGLSIKI---- 150 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~---- 150 (547)
.++...|++.++..+++.|...=. .-+..+|+.++-.++++ .. ++-+.-+..++...
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~ 215 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP 215 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch
Confidence 788899999999999998876533 36888888855554432 11 22222233333222
Q ss_pred --CCCCchhHHHHHHHHHHhcC-----ChHHHHHHhccCC-CCChh-hHHHHHHHHHcCCCchhHHHHHHHHhh------
Q 044812 151 --GFVVDVILANSLMSMYVKCG-----KFSECLNLFDEMP-QRNVG-SWNVRISGHASSGDFSLVVRSRRVFDQ------ 215 (547)
Q Consensus 151 --g~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~a~~~~~~------ 215 (547)
.+-|.......++.-..-.. -+-.+.+.++.-- .|+-. ....++..+.. +.+. +..+.+.
T Consensus 216 Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~---~~~~ce~ia~~~i 290 (549)
T PF07079_consen 216 YEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQ---VGHFCEAIASSKI 290 (549)
T ss_pred HHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHH---HHHHHHHHHHHhH
Confidence 13344444444544333221 2334445553322 23221 22233333333 2333 2222222
Q ss_pred --cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHH-------HHhh-ccCCchhHH---HHHHH
Q 044812 216 --MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL-------PTCS-SLIGLSGGK---QIHGF 282 (547)
Q Consensus 216 --~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll-------~~~~-~~~~~~~a~---~~~~~ 282 (547)
+.+.=+.++..++...++.++..+|.+.+.-+ .. +.|+...-..++ +..+ ...++..-. .++..
T Consensus 291 ~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL-~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 291 EKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL-KI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-Hh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 22334567888999999999999999888765 33 455443222221 1111 111122222 22222
Q ss_pred HHHcCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHhcC-CC-CCChhhHHHHH----HHHHh---cCChHHHHHHHHH
Q 044812 283 AIRKELNHDVSLCNALI---DMYSKCGS-LDCARRVFEDS-SF-NKDAITWSSIV----SGYGL---HGKGHEAVLLYNK 349 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~-~~-~~~~~~~~~li----~~~~~---~~~~~~a~~~~~~ 349 (547)
....++... ....-|+ .-+-+.|. -++|+++++.. .+ .-|..+-|... .+|.+ ...+.+-+.+-+-
T Consensus 368 ~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 222222111 1111122 22333444 67777777652 22 22333333222 22222 1223333444444
Q ss_pred HHHcCCCCC----HHHHHHHHHH--HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCC
Q 044812 350 MVCLGSKPD----IITIVGVLSA--CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423 (547)
Q Consensus 350 m~~~g~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 423 (547)
..+.|++|- ...-+.|.++ +...|++.++.-.-..+. .+.|++.+|..+.-++....++++|..++..+|
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 456677663 3334444443 456677777776655554 457788888877777777788888888888876
Q ss_pred CCCHHHHHH
Q 044812 424 EPSPSIWGA 432 (547)
Q Consensus 424 ~p~~~~~~~ 432 (547)
|+..+++.
T Consensus 523 -~n~~~~ds 530 (549)
T PF07079_consen 523 -PNERMRDS 530 (549)
T ss_pred -CchhhHHH
Confidence 56555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.092 Score=42.95 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=84.6
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhH
Q 044812 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397 (547)
Q Consensus 318 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 397 (547)
..+.|++..-..|..+....|+..+|...|.+...--+.-|......+.++....+++..|...++.+.+-+.-.-++..
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 33355666666677777777887888777777765444556667777777777777777777777777654211113445
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
...+...|...|+.++|...|+.. ...|+...-.-...-+.+.|+..++..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 556677777778877777777765 33455443333334455666655555443333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0078 Score=55.18 Aligned_cols=277 Identities=13% Similarity=0.060 Sum_probs=150.2
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcch----HHHHHHHHccCCCcHHHHHHHHHHHH----hCCC-CchhHHHHHHH
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFT----LATISKLSGEIKDLNVGMLIHGLSIK----IGFV-VDVILANSLMS 164 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~l~~ 164 (547)
.-+++.|+.+..+.+|+..++.|.. |..| |..|.++|.-.+++++|+++...=+- .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478899999999999999987743 4443 56677788888899999887643211 1100 01122233444
Q ss_pred HHHhcCChHHHHHHhccCCC-----C----ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCC
Q 044812 165 MYVKCGKFSECLNLFDEMPQ-----R----NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235 (547)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 235 (547)
.+--.|.+++|...-.+-.. . ....+..+...|-..|+.-...... +...++.=+. .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe---------e~g~f~~ev~-----~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE---------EKGAFNAEVT-----S 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh---------hcccccHHHH-----H
Confidence 55556777776654333211 0 1112333444444444322100000 0011111000 0
Q ss_pred CHHHHHHHHHHc---hhcCCC-CCChHHHHhHHHHhhccCCchhHHHHHHHHHH----cCCC-CchhHHHHHHHHHHhcC
Q 044812 236 DLDEALVLFLEM---QLKDRI-EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR----KELN-HDVSLCNALIDMYSKCG 306 (547)
Q Consensus 236 ~~~~A~~~~~~m---~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g 306 (547)
.++.|.++|.+= ..+.|- -.....|..+...|.-.|+++.|....+.-.. -|-. .....+..+.+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 122333333211 011111 11234566666777777888888776654332 2211 12345667788888888
Q ss_pred CHHHHHHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhcc
Q 044812 307 SLDCARRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCL----G-SKPDIITIVGVLSACGRS 372 (547)
Q Consensus 307 ~~~~A~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~l~~~~~~~ 372 (547)
+++.|.+.|+. ++ ... ..+..+|...|.-..++++|+.++.+-... + ..-....+.+|..++...
T Consensus 250 ~fe~A~ehYK~tl~LAielg-~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELG-NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhc-chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 88888888763 34 333 234566777777777888888777654321 1 112356778888888888
Q ss_pred CcHHHHHHHHHHHH
Q 044812 373 GLINEGLEIYNSVI 386 (547)
Q Consensus 373 g~~~~a~~~~~~~~ 386 (547)
|..++|+.+.+...
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 88888877665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.23 Score=45.74 Aligned_cols=247 Identities=18% Similarity=0.204 Sum_probs=163.0
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChH--HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKV--SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (547)
++-.-.|+++.|.+-|+.| .. .|... -...+.-.-.+.|+.+.|.++-+..-..- +.-.......+...|..|
T Consensus 128 Qaal~eG~~~~Ar~kfeAM-l~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 128 QAALLEGDYEDARKKFEAM-LD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHhcCchHHHHHHHHHH-hc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcC
Confidence 3445679999999999998 33 12211 12333334457788888888877776654 333456778899999999
Q ss_pred CHHHHHHHHhcC----CCCCChhh--HHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCcHH
Q 044812 307 SLDCARRVFEDS----SFNKDAIT--WSSIVSGYG---LHGKGHEAVLLYNKMVCLGSKPDIIT-IVGVLSACGRSGLIN 376 (547)
Q Consensus 307 ~~~~A~~~~~~~----~~~~~~~~--~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~ 376 (547)
+++.|+++++.. .+.++..- -..|+.+-. -..+...|...-.+..+ +.||... -..-..++.+.|+..
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchh
Confidence 999999999752 23455432 222332211 12245555555555444 5676433 334456788999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEP-SPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
++-.+++.+-+. .|.+.++... .+.+.|+ .+.+-+++. ..+| +..+...+..+....|++..|..--+
T Consensus 281 Kg~~ilE~aWK~---ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 281 KGSKILETAWKA---EPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred hhhhHHHHHHhc---CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999865 5655554322 2345554 333333322 2345 45577788889999999999999988
Q ss_pred HHHhhCCCCCchHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 044812 452 SLIQLEPENPSNYVSLSNLYASS-RRWDAVAELRTMMKDR 490 (547)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 490 (547)
.+.+..|. ...|..|.+.-... |+-.++...+-+..+.
T Consensus 354 aa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 354 AAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88888884 56888999888765 9999999998876654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.007 Score=50.89 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=62.1
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CcHHHHH
Q 044812 321 NKDAITWSSIVSGYGL-----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS----------------GLINEGL 379 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------g~~~~a~ 379 (547)
..+..+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 5566666666666654 456666777778888888888888888888876542 2235577
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
+++++|.. +|+.||.+++..+++.+++.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 77777744 4778888888777777766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=59.26 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN---YVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...|+.+..+|...|++++|+..|+++++++|++... |..++.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567777777777777777777777777777766643 777777777777777777777776654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.012 Score=52.63 Aligned_cols=102 Identities=9% Similarity=0.123 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALV 434 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 434 (547)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ ...|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556788888888888876632111 1245666777888888888888888776 22232 34566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
.++...|+.+.|...|+++++..|.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7788899999999999999999887653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.076 Score=49.60 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCCh------hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDA------ITWSSIVSGYGL---HGKGHEAVLLYNKMVCLGSKPDIITIVG 364 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 364 (547)
+...++-.|....+++..+++++.+...|+. ..-....-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3344555677788888888888876533322 112233445556 7888888888888666666777778777
Q ss_pred HHHHHhc---------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC-H---HHHHHHH---HhC-------
Q 044812 365 VLSACGR---------SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ-L---DRALDFI---KTM------- 421 (547)
Q Consensus 365 l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~---~~A~~~~---~~~------- 421 (547)
+...|-. ....++|...|.+.- .+.|+...=-.++..+...|. . .+..++- ...
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7765421 223566777766554 334443221112222222232 1 1111211 111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 422 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
....+-..+.+++.++.-.|+.++|.+..+++.+..|+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 12245556677888888888888888888888887654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.23 Score=49.18 Aligned_cols=131 Identities=9% Similarity=-0.005 Sum_probs=64.8
Q ss_pred cccCCcccccccccCCcch---------HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhH
Q 044812 4 SSARNTFALVTSRNYTSAT---------VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A 74 (547)
++|.++.+.-|++.+.+.. +...-.++-+||++.-..-+-+ +... .+...-.+=+. +--|++++|
T Consensus 680 edA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i---~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 680 EDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTI---HSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhh---hhHHHHhHhHh--hhhcchhHh
Confidence 4555555555555544332 2333456778888776532211 1110 01111111122 224888999
Q ss_pred HHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCcchHHHHHHHHccCCCcHHHHHHHH
Q 044812 75 QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHG 145 (547)
Q Consensus 75 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (547)
+++|-.+.++|.. +....+.|+|-...++++.--.. +-..-...|+.+...++....++.|.+++.
T Consensus 754 ek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 754 EKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888776643 45556667776666555431100 000012345555555555555555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.03 Score=43.19 Aligned_cols=91 Identities=15% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLG 406 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 406 (547)
+..++-..|+.++|..+|++....|+... ...+..+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677788888888888877776554 33555666677777888888888877765421101 1222222344566
Q ss_pred hcCCHHHHHHHHHh
Q 044812 407 RAGQLDRALDFIKT 420 (547)
Q Consensus 407 ~~g~~~~A~~~~~~ 420 (547)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 67777777776644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0029 Score=44.19 Aligned_cols=63 Identities=16% Similarity=0.360 Sum_probs=50.5
Q ss_pred HHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 403 DMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
..|.+.+++++|.+.++++ ...| +...|.....++...|++.+|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888999999998887 4445 4557788888899999999999999999999987765443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.33 Score=45.09 Aligned_cols=268 Identities=10% Similarity=0.019 Sum_probs=129.9
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 173 (547)
..+.+..++..|+..+....+.... +..-|..-...+...++++.+.--.+.-++.. +.....+...-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 3455566677777777776665422 22233333334444455554443333333221 111223333444455555555
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC-----CChhhHHHH-HHHHHHCCCHHHHHHHHHHc
Q 044812 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-----RNVYAWTAM-INGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~-----~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m 247 (547)
+|.+.++.-. .+ ++..++..++...+ |....|..+ ..++.-.|++++|.+.--..
T Consensus 135 ~A~~~~~~~~-----~~--------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 135 EAEEKLKSKQ-----AY--------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHhhhhh-----hh--------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 5555554111 00 11112222222221 222333332 24455566666666655544
Q ss_pred hhcCCCCCChHHHHhHH--HHhhccCCchhHHHHHHHHHHcCCCCc-----------hhHHHHHHHHHHhcCCHHHHHHH
Q 044812 248 QLKDRIEPNKVSLVSVL--PTCSSLIGLSGGKQIHGFAIRKELNHD-----------VSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 248 ~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
.+. .++ ..+...+ .++.-.++.+.+...|++.+..+.... ...+..=.+-..+.|++..|.+.
T Consensus 196 -lkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 196 -LKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred -Hhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 221 111 1112222 223344555666666655554431110 11122223445677888888888
Q ss_pred Hhc-CCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 315 FED-SSFNK-----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 315 ~~~-~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
|.+ +++.| +...|........+.|+..+|+.--++.... .|. ...|..-..++...+++++|.+-|++..+
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 865 44444 4445666667777888888888877776552 222 12233333456667788888888887765
Q ss_pred h
Q 044812 388 T 388 (547)
Q Consensus 388 ~ 388 (547)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 4
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.058 Score=52.67 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=104.8
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCCC-----------CCcchHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCC
Q 044812 53 SNPFVSTKLITAYALCGQPTQSQLVFNSIQH-----------KDVYLYNSLINGYVKNHG--HNEALELFSNMYYSNVSP 119 (547)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~p 119 (547)
|.+..+..-+-.|...|.+++|.++----.- .+...++..-.+|.+-++ +-+.+.-+++|+++|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3444444555556666777776653211110 122223333444544433 334445556677777666
Q ss_pred CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHc
Q 044812 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199 (547)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 199 (547)
+... +...++-.|.+.+|.++|.+ .|.. |..+..|.....+|.|.+++..-... .-..|++-
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~---eKKmL~RK--- 695 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPK---EKKMLIRK--- 695 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChH---HHHHHHHH---
Confidence 6543 33455666777777766643 3322 23344444555555555554332210 00011100
Q ss_pred CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHH-------------HHchhcCCCCCChHHHHhHHHH
Q 044812 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF-------------LEMQLKDRIEPNKVSLVSVLPT 266 (547)
Q Consensus 200 ~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~-------------~~m~~~~~~~p~~~~~~~ll~~ 266 (547)
-.+......+|. +....+...|+.++|..+. +++ -..+..+...+..-
T Consensus 696 ---------RA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl-----d~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 696 ---------RADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL-----DKAEREPLLLCATY 756 (1081)
T ss_pred ---------HHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc-----chhhhhHHHHHHHH
Confidence 000111111221 1223334445555554432 222 12233344444444
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 319 (547)
+.+...+..|.++|..|-+. ..+++.....+++++|.++-++.+
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 55556666777777665432 346677777888888888887754
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.37 Score=45.31 Aligned_cols=91 Identities=8% Similarity=0.007 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 044812 39 TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV---YLYNSLINGYVKNHGHNEALELFSNMYYS 115 (547)
Q Consensus 39 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 115 (547)
-.++-+.+.+. +.|..+|-+|++.+...|..++.+++++++..|-+ .+|..-+.+-...++++....+|.+.+..
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 34555555444 67899999999999999999999999999998753 57888888888889999999999998876
Q ss_pred CCCCCcchHHHHHHHHcc
Q 044812 116 NVSPDDFTLATISKLSGE 133 (547)
Q Consensus 116 ~~~p~~~~~~~l~~~~~~ 133 (547)
... ...|..-+.-..+
T Consensus 106 ~l~--ldLW~lYl~YIRr 121 (660)
T COG5107 106 SLN--LDLWMLYLEYIRR 121 (660)
T ss_pred hcc--HhHHHHHHHHHHh
Confidence 543 4455554444333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.082 Score=40.47 Aligned_cols=141 Identities=20% Similarity=0.207 Sum_probs=83.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (547)
..-.|..++..++..+...+ .+..-++.+|--....-+-+-..+.++.+-+-+ |. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHH
Confidence 34457777777777777663 245556665544433334444444444443322 22 22344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 414 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
...-+-.++ .+....+..+.++...|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++..++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444432 344556677788899999999999999998777778999999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0019 Score=45.89 Aligned_cols=61 Identities=10% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQL----EPE---NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
.+++.+...|...|++++|+..|+++++. ++. ...++..++.++...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36777777788888888888888877754 111 24467778888888888888888877654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.15 Score=50.07 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH---------HhhhCCCCCCcchHHHHHHHHccCCCcHH--HHHHHHHHHHhCCCCc
Q 044812 87 YLYNSLINGYVKNHGHNEALELFS---------NMYYSNVSPDDFTLATISKLSGEIKDLNV--GMLIHGLSIKIGFVVD 155 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~---------~m~~~~~~p~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~g~~~~ 155 (547)
..+.+-+..+...|.+++|..+-- .+-.. ..+.-.++..-.+|.+.++..- ...-++++++.|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 344455556677777777654421 11000 0122334444455655555442 2333456666676666
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC
Q 044812 156 VILANSLMSMYVKCGKFSECLNLFDEMPQ 184 (547)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 184 (547)
... +...++-.|++.+|-++|.+--.
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCc
Confidence 553 44556677888888877766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.41 Score=44.42 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=81.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 440 (547)
+.+..+.-|...|+...|.++-.+. .+ |+...|...+.+|+..|+|++-..+... +-.+.-|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4445566667778877777765544 43 7888888889999999999888876654 23456788888889999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|+..+|..+..++ .+..-+..|.+.|+|.+|.+..-+.+
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 9988888887771 23667788889999998888765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.081 Score=45.75 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=70.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKP--DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
.....+...|++.+|...|+.+....... -......++.++.+.|+++.|...++.+++.+.-.|.. -+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 33444556666666666666666542111 12334455556666666666666666666554332221 1111111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch-----------------HHHHHH
Q 044812 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN-----------------YVSLSN 469 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------~~~l~~ 469 (547)
......... ......+...+|...|+.+++.-|+++.. -..++.
T Consensus 89 ~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000000 00112223455666666666666665442 234678
Q ss_pred HHHcCCCHHHHHHHHHHHHhC
Q 044812 470 LYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 470 ~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.|.+.|.+..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999998764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.13 Score=48.15 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCchhHHHHhccCCCC-C------cchHHHHHHHHHh---cCChhHHHHHHHHhhhCCCCCCcchHHHHHH
Q 044812 60 KLITAYALCGQPTQSQLVFNSIQHK-D------VYLYNSLINGYVK---NHGHNEALELFSNMYYSNVSPDDFTLATISK 129 (547)
Q Consensus 60 ~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 129 (547)
.++-.|....+++..+++++.+... + ...--...-++-+ .|+.++|++++..+......+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566667777777777766542 1 1111122233344 5667777777766555555566666666655
Q ss_pred HHcc---------CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcC
Q 044812 130 LSGE---------IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200 (547)
Q Consensus 130 ~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 200 (547)
.|-. ...++.|...|.+.-+. .||...--.++..+...|...+...-++++. ..+-...++.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-------~~l~~llg~k 296 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG-------VKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH-------HHHHHHHHhh
Confidence 4421 11234444444443322 2333322222333333333211111111100 0111122233
Q ss_pred CCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhc
Q 044812 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250 (547)
Q Consensus 201 g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 250 (547)
|..+. ..+-..+.+++.+..-.|++++|.+.++.| .+
T Consensus 297 g~~~~------------~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~-~~ 333 (374)
T PF13281_consen 297 GSLEK------------MQDYWDVATLLEASVLAGDYEKAIQAAEKA-FK 333 (374)
T ss_pred ccccc------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH-hh
Confidence 33322 345566778888888889999999998888 44
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.085 Score=45.68 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+.++..+.-.+.+.-.+..+.+.++...+-+......|.+.-.+.|+.+.|...|+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444445555555555555554333344444555555555555555555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.29 Score=42.31 Aligned_cols=66 Identities=15% Similarity=0.017 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
...-.....+...|++++|.+.|+.+.......| -......++.++.+.|+++.|...++...+..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344556677888889999888888833322222 12334555666777777777777777766653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.21 Score=43.38 Aligned_cols=137 Identities=7% Similarity=0.028 Sum_probs=103.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--------CCCCCHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--------PVEPSPSIWGA 432 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~ 432 (547)
..+.++.++.-.|.+.-....+++.++. ..+.++.....|+..-.+.|+.+.|...|++. +.+.+......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4456667777778888888899998875 44557788888888888999999999999854 12223333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccce
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 500 (547)
....+.-.+++..|...+.++.+.+|.++..-+.-+-++.-.|+..+|++.++.|+... |.+....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 44456667889999999999999999999888888888888899999999999998764 3344443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.02 Score=52.80 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+++.|.-+|.+.+++..|++.-+++++.+|+|......-+.+|...|+++.|+..|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555566666666666665555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0041 Score=44.13 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=36.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-------P-VEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
.+++.+...|...|++++|++.|++. + ..|+ ..++..+..++...|++++|++.++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34555555555556655555555544 1 1122 346677777777777888887777777653
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.035 Score=43.24 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 370 (547)
..++..++.++++.|+++....+++.. ++..+... ..+. .-......|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 456667777777777777777777652 22211100 0000 1122346788888888888888
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
..|++..|.++.+.+.+.++++.+..+|..|++-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888777777887777643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.043 Score=50.74 Aligned_cols=96 Identities=11% Similarity=0.131 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
..++..+.-++.+.+++.+|+...++. .. .+|.-.+--=..+|...|+++.|+..|+++++.+|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 446777888999999999999998876 33 3566677778899999999999999999999999999999999999888
Q ss_pred cCCCHHHH-HHHHHHHHhC
Q 044812 473 SSRRWDAV-AELRTMMKDR 490 (547)
Q Consensus 473 ~~g~~~~A-~~~~~~m~~~ 490 (547)
+...+.+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 87776554 8889999643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.1 Score=45.23 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=48.8
Q ss_pred hCCCCChhHHHH-----HHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHHHHhcCCh--hHHHHHHHHhhhCCCC
Q 044812 49 LGHISNPFVSTK-----LITAYALCGQPTQSQLVFNSIQHKDV---YLYNSLINGYVKNHGH--NEALELFSNMYYSNVS 118 (547)
Q Consensus 49 ~g~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~ 118 (547)
-|++.+..-|.+ +++-+...+.+..|+++-..+..|.. ..|.....-+.+..+. +++++..++=...-.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 355555444433 45556666777777777777766542 2333333333333221 223332222221112
Q ss_pred CCcchHHHHHHHHccCCCcHHHHHHHHH
Q 044812 119 PDDFTLATISKLSGEIKDLNVGMLIHGL 146 (547)
Q Consensus 119 p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 146 (547)
-+..+|..+.+-....|+++-|..+++.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2344566666666667777777666543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.18 Score=44.89 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 044812 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG---QLDRALDFIKTM-PVEP-SPSIW 430 (547)
Q Consensus 356 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 430 (547)
+-|...|..|..+|...|+++.|..-|....+-. .+++..+..+..++..+. ...++..+|+++ ...| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3367889999999999999999999999887543 345666666666655432 457888889887 4455 45577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
..|...+...|++.+|...|+.|++..|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 77778899999999999999999998876543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.16 Score=40.11 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 044812 443 SEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~ 461 (547)
...|..-|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4456666666666666553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.97 Score=41.87 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=82.5
Q ss_pred CCCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chh
Q 044812 319 SFNKDAIT-WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTE 396 (547)
Q Consensus 319 ~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 396 (547)
.+.||... --.-..++.+.|+..++-.+++.+-+....|+.. .+....+.|+ .+..-++...+--.++| +.+
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 34555443 2233467888888888888888888875555532 1222344454 33333444333324455 456
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASV-MHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 456 (547)
....+..+-...|++..|..--+.. ...|....|..|...-. ..||-.++...+-+.++-
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6666777777888887776665554 45677777777776554 448888888888877653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.058 Score=47.35 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=27.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPE---NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|+.++...|+++.|...|..+.+..|. -|..+..|+.+..+.|+.++|..+|+.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444555555555555555555444322 23334444555555555555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.068 Score=46.92 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM----PVEPS-PSIWGALV 434 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~ 434 (547)
.|+.-+. +.+.|++..|..-|...++.+.-.+ ....+--|.+++...|++++|...|..+ +..|- +..+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3455667777777777766542111 2334445677777777777777777655 33332 35667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
.+..+.|+.++|...|+++.+.-|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77788888888888888888887776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.2 Score=39.48 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=42.1
Q ss_pred HHhHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 403 DMLGRAGQLDRALDFIKTM----PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
....+.|++++|.+.|+.+ +..| ....-..|+.+|.+.+++++|...+++.++++|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3345667777777777766 2222 2335566788888888888888888888888877665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.048 Score=51.67 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=42.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666777777777777777664 455553 24677777777777777777777777765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.092 Score=40.94 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 438 (547)
..++..++.++++.|+++....+++..- |+.++...- .+. +-..-+..|+..++.+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHHH
Confidence 4455666666666666666666554332 433322110 000 0011134566666666666666
Q ss_pred HcCCHHHHHHHHHHHHhhC--CCCCchHHHHHH
Q 044812 439 MHGNSEMQDLAYKSLIQLE--PENPSNYVSLSN 469 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 469 (547)
..|++..|.++.+...+.- |-+...|..|+.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666666666655543 222334444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.27 Score=44.28 Aligned_cols=112 Identities=15% Similarity=0.041 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhH----HHHHHHHhHhcCCHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI----CACVVDMLGRAGQLDR 413 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~ 413 (547)
|+..+|...|+++.+. .+-|...+...-.+|...|+...-...++++... ..++... ...+..++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444443 2233444444444444455444444444444332 1222221 1222333444555555
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 414 ALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 414 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
|++.-++. .+.| |...-..+...+...|+++++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55554443 2222 333444444444445555555544443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.23 Score=40.22 Aligned_cols=88 Identities=6% Similarity=-0.028 Sum_probs=68.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGALVSASVMHGNS 443 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 443 (547)
..-+...|++++|..+|+-+..- + .-+..-+..|..++...+++++|...|.... ...|+...-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33456789999999999988653 1 2256677888888889999999999998661 123444556678899999999
Q ss_pred HHHHHHHHHHHh
Q 044812 444 EMQDLAYKSLIQ 455 (547)
Q Consensus 444 ~~a~~~~~~~~~ 455 (547)
+.|...|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999999888
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.3 Score=38.77 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
..|+.- ..-.+.|++++|...|+.+..... +-...+...++.++.+.++++.|+...++..+.++-.|+.. |-..+
T Consensus 36 ~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 36 ELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 344444 445678999999999999987622 11356677778889999999999999999998877777653 22223
Q ss_pred HHhHh-------cCCHHHHHHHHHhC-------C---CCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHH
Q 044812 403 DMLGR-------AGQLDRALDFIKTM-------P---VEPSPSIW------------GALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 403 ~~~~~-------~g~~~~A~~~~~~~-------~---~~p~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.++.. ..+...+.+.+..+ | -.||...- ..+.+-|.+.|.+..|..-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 33322 12333444444333 2 22333221 22345678999999999999999
Q ss_pred HhhCCCCCchHH---HHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 454 IQLEPENPSNYV---SLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 454 ~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++.-|..+.+.. .|..+|.+.|..++|.+.-+-+..
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999888888655 456788999999999987766544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.26 Score=47.92 Aligned_cols=133 Identities=13% Similarity=0.046 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 101 (547)
....++..|.+.|-++.|.++-++-.. -.....+.|+++.|.++.+... +...|..|.....++|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 356666666666666666665543322 2455566677777777766655 44578888888888888
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
++-|.+.|++... |..|+-.|...|+.+...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887653 55666667777887777777777666551 44455556666777777777765
Q ss_pred CC
Q 044812 182 MP 183 (547)
Q Consensus 182 ~~ 183 (547)
..
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.93 Score=44.90 Aligned_cols=157 Identities=12% Similarity=0.078 Sum_probs=98.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLG-SKPD-----IITIVGVLSACGR----SGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+++...-.|+-+.+++.+.+..+.+ +.-. .-.|..++..++. ....+.|.++++.+.++ -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 4444444566666666666554431 2111 1223333333322 45678888888888866 46666554
Q ss_pred HH-HHHhHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHH-HHHH
Q 044812 400 CV-VDMLGRAGQLDRALDFIKTMPV------EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL-SNLY 471 (547)
Q Consensus 400 ~l-~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~~ 471 (547)
.. ...+...|++++|.+.|++... +.....+--+..++...+++++|.+.|.++.+.+.-+...|..+ +-++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33 3456678899999999987521 11234455567778888999999999999988765555555443 4445
Q ss_pred HcCCCH-------HHHHHHHHHHHh
Q 044812 472 ASSRRW-------DAVAELRTMMKD 489 (547)
Q Consensus 472 ~~~g~~-------~~A~~~~~~m~~ 489 (547)
...|+. ++|.+++.+...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 567877 888888887743
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.94 Score=44.19 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..|.....+.|+++-|.+.|.+. .. +..++-.|...|+.+...++.......| -++...
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af 409 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAF 409 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHH
Confidence 5567888888888888899999888877 32 5666666777777777777777766665 255556
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
.++.-.|++++..+++.+.+
T Consensus 410 ~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHcC
Confidence 66666788888888887766
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.054 Score=30.72 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
..|..+..++...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677788888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.04 Score=31.33 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.+|..++.++...|++++|+..|+++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.6 Score=37.77 Aligned_cols=162 Identities=12% Similarity=0.110 Sum_probs=86.0
Q ss_pred CHHHHHHHHhcCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 044812 307 SLDCARRVFEDSSFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385 (547)
Q Consensus 307 ~~~~A~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 385 (547)
.++.|.-+.+++..-+.+ ..|+.-...|..+|.++.|-..+++.-+. ....++++|+++|++.
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHH
Confidence 345555555555422222 23555556677777776666655554321 1122333444444333
Q ss_pred HHhc----CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 386 INTY----RIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-------VEPSP-SIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 386 ~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
..-. ....-...+......+.+...+++|-..+.+-. ..|+. ..|...+-.+....|+..|++.++.-
T Consensus 137 lavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 137 LAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 2210 111123344455566677777777666655441 12333 23445555566677888888888886
Q ss_pred Hhh----CCCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 454 IQL----EPENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 454 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
-+. +|.+..+...|+.+| ..|+.+++..++.
T Consensus 217 ~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 217 SQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 554 366667777777776 4567666665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.12 Score=45.33 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=81.0
Q ss_pred HHHHhccCC--CCCcchHHHHHHHHHhc-----CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC-----------
Q 044812 74 SQLVFNSIQ--HKDVYLYNSLINGYVKN-----HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK----------- 135 (547)
Q Consensus 74 A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 135 (547)
.+..|.... +++-.+|-..+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 46677777777776543 456666677888999999999999999999776543
Q ss_pred -----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHhccCC
Q 044812 136 -----DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF-SECLNLFDEMP 183 (547)
Q Consensus 136 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 183 (547)
+-+-+..++++|...|+.||..+-..|+++|.+.+.. .+..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3456788999999999999999999999999887763 33444443443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.44 Score=45.52 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=80.6
Q ss_pred ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh
Q 044812 339 KGHEAVLLYNKMVC-LGSKPD-IITIVGVLSACGRS---------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407 (547)
Q Consensus 339 ~~~~a~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (547)
..+.|+.+|.+... +.+.|+ ...|..+..++... ....+|.+.-+...+.. +-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 35567778888772 224555 44555555443321 22344555555554321 2255666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH--HHHHHHHcCCCHHHHHHH
Q 044812 408 AGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV--SLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~ 483 (547)
.|+++.|..+|++. ...||.. +|......+.-.|+.++|.+.++++++++|....+-. ..++.|+.. ..++|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 67777777777776 4455543 5555566666677777777777777777775433222 222234333 34555555
Q ss_pred HH
Q 044812 484 RT 485 (547)
Q Consensus 484 ~~ 485 (547)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.2 Score=35.72 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
...++..+...+.......+++.+...+ ..+...++.++..+++.+ .....+.++. . .+......++..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHH
Confidence 3456666666667777777777776665 245666677777766543 2333333331 1 12222333566666
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH-GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
+.+.++++.-++.+++.. ...+..+... ++++.|.+...+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 667777777777776521 1122222333 667777766654 234556666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.3 Score=35.60 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 101 (547)
....++..+...+.+..+...++.+...+ +.++..++.++..|++.+ ..+....++. ..+......+++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 35667777777788888888888888887 467888888888888753 3444455542 2333444556777777777
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHHccC-CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEI-KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 167 (547)
++++.-++..+.. +...+..+... ++++.|.++... ..+...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 7777777766532 12222222222 556666655543 124445555554443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.9 Score=41.65 Aligned_cols=99 Identities=10% Similarity=0.193 Sum_probs=69.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-V-EPSP--SIWGALVSASV 438 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 438 (547)
..+..++-+.|+.++|++.++++.+.+.......+...|+.++...+.+.++..++.+-. + -|.. ..|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778999999999999998764333345577789999999999999999998873 1 2433 35665554433
Q ss_pred HcCC---------------HHHHHHHHHHHHhhCCCCC
Q 044812 439 MHGN---------------SEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 439 ~~~~---------------~~~a~~~~~~~~~~~~~~~ 461 (547)
..++ -..|.+.+.++.+.+|.-|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3333 2346678888888776543
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.2 Score=38.20 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=59.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
...|++.+|..+|+...... +-+...-..+..++...|+.+.|..++..+-.+. -.........-+..+.+.....+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455555555555554431 1123334444555555555555555555442210 000111111122333333333333
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCC
Q 044812 415 LDFIKTMPVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 415 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 476 (547)
..+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.-.|.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33333332233 33344445555555555555555555444432 3344445555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=2 Score=37.62 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFEDSS----FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS- 367 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~- 367 (547)
..+......+...+.+..+...+.... .......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344445555555555555555554421 122333444455555555556666666666555332221 11111122
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCC
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRI--KPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS--PSIWGALVSASVMHGN 442 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 442 (547)
.+...|+++.|...+.+.... .. ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666665331 11 012222333333345566666666666655 22222 4556666666666667
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+.+...+.......|.....+..+...+...|.++++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777766654445555555555556667777666665443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.4 Score=39.41 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=87.9
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA---LVSASVMHGNS 443 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~ 443 (547)
......|++.+|...|....... +-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34677899999999999987642 33566777889999999999999999999964433333333 22333333333
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.+... +++-...+|+|...-..++..+...|+.++|.+.+=.+.+++
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33222 333455689999999999999999999999999877775543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.27 Score=39.89 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
..+...|++++|..++..+.... +-+...|..++.++...|+...|.++|+.
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 33444444444444444444431 12344444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.6 Score=41.96 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHh
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKT 420 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 420 (547)
+|.+.-++..+.+ +-|......+..+....++++.|...|++.. .+.|+ ...|........-.|+.++|.+.+++
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445555555543 2245555555555555555666666666554 22343 23333334444456666666666665
Q ss_pred -CCCCC
Q 044812 421 -MPVEP 425 (547)
Q Consensus 421 -~~~~p 425 (547)
+...|
T Consensus 398 alrLsP 403 (458)
T PRK11906 398 SLQLEP 403 (458)
T ss_pred HhccCc
Confidence 34344
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.22 Score=43.66 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=64.2
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------------cHHHHH
Q 044812 321 NKDAITWSSIVSGYGL-----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG----------------LINEGL 379 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~a~ 379 (547)
+.|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4566666666666543 3456666667788888888888888888887765432 224577
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (547)
.++++|. .+|+.||.++-..|++++++.+..
T Consensus 144 ~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 8888884 558999988888888888887753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.36 Score=37.02 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=48.2
Q ss_pred HhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC---CchHHHHHHHHHcCCCH
Q 044812 404 MLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE-PEN---PSNYVSLSNLYASSRRW 477 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~ 477 (547)
++...|+++.|++.|.+. .+.| ....||.=..++.-.|+.++|+.-+++++++. +.. ...|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666666554 2222 44556666666666666666666666666653 221 12344455556666666
Q ss_pred HHHHHHHHHHHhCC
Q 044812 478 DAVAELRTMMKDRG 491 (547)
Q Consensus 478 ~~A~~~~~~m~~~~ 491 (547)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.14 Score=45.72 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCccCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD-----RGLKKSP 496 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 496 (547)
.++..++..+...|+.+.+.+.+++....+|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 35566777777788888888888888888888888888888888888888888888887754 4555554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.2 Score=41.51 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=65.6
Q ss_pred hHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 405 LGRAGQLDRALDFIKTM-PVEP------SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
+...|++++|..-|.+. ...| ..+.|..-..++.+.+..+.|+.--.++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44566666666666554 1112 2344555566778889999999999999999998888888888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 044812 478 DAVAELRTMMKDRG 491 (547)
Q Consensus 478 ~~A~~~~~~m~~~~ 491 (547)
++|++=|+.+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987754
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.32 Score=43.87 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=91.3
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHHcCCH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIW----GALVSASVMHGNS 443 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~----~~l~~~~~~~~~~ 443 (547)
--.|+..+|...++++.+++ +.|...+...=+++.-.|+.+.-...+++. +. .||.+.| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34678888888999998864 557777777778888899999999999887 33 4665433 3334455688999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++|++.-+++.+++|.+..+......++...|++.++.+...+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999988888888888888888888887654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.75 E-value=4.8 Score=39.82 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFN--KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVL 366 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l~ 366 (547)
+..+|..-+..-.+.|+.+.+.-+|++..+. .=...|-..+.-....|+.+-|..++....+-.++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567788888888889999999998875422 11233444555455558888888887776654333 2233333322
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----H
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRAL---DFIKTM-PVEPSPSIWGALVS-----A 436 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~ 436 (547)
+...|+++.|..+++.+..++ |+. ..-..-+....+.|..+.+. .++... +.+-+..+...+.- .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 455789999999999998763 543 33333455567788888887 444443 22222222222222 2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999988877665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.3 Score=36.09 Aligned_cols=168 Identities=11% Similarity=0.091 Sum_probs=100.9
Q ss_pred CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh
Q 044812 318 SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396 (547)
Q Consensus 318 ~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 396 (547)
+.+.|+ +..||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+...-....-.|-..
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 344555 4568888888899999999999999998854332222222222 34557888888877666654423344444
Q ss_pred HHHHHHHHhHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------CchHHHHH
Q 044812 397 ICACVVDMLGRAGQLDRALDFI-KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN-------PSNYVSLS 468 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~ 468 (547)
.|..+.. +.-++.+|..-+ ++.. ..|..-|...+-.+. .|+.. .+.+++++.+...++ ..+|..|+
T Consensus 171 LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 171 LWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 4444433 334666666544 3332 234344433333222 12221 134455554443333 44788999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 469 NLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
.-+...|+.++|..+|+-....++
T Consensus 245 K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHhH
Confidence 999999999999999998776654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.63 E-value=6.3 Score=40.66 Aligned_cols=178 Identities=9% Similarity=-0.008 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHH---HHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHH
Q 044812 55 PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN---SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131 (547)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 131 (547)
......-+..+.+...++-|..+-+.-..+....-+ ....-+-+.|++++|...|-+-... +.| ..++.-+
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 344566677788888888888887765443222222 2233455789999999888776543 222 2345555
Q ss_pred ccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChh--hHHHHHHHHHcCCCchhHHHH
Q 044812 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG--SWNVRISGHASSGDFSLVVRS 209 (547)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~a 209 (547)
........--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.+. |
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~---a 482 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDE---A 482 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHH---H
Confidence 5556666667788888888865 55556779999999999999888888776 2222 13344555555555554 3
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 210 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..+..+... +..... -.+-..+++++|++.+..+
T Consensus 483 ~~LA~k~~~-he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 333332222 222222 3344578899999999887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.5 Score=43.34 Aligned_cols=176 Identities=12% Similarity=0.004 Sum_probs=106.0
Q ss_pred HHhHHHHhhccCCchhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHh
Q 044812 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV--SLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGL 336 (547)
Q Consensus 260 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~ 336 (547)
...-+..+.+...++.|..+-+ ..+..++. .......+.+.+.|++++|...|-+ ++ ..++ ..+|.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~-~le~---s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG-FLEP---SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc-cCCh---HHHHHHhcC
Confidence 3444555555555555555432 33332221 2333344555667888888877754 55 2222 124555666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHhHhcCCHHHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI-KPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
..+...-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+..- . |. ..|. ...+..+.+.+-+++|.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAE 483 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHH
Confidence 66777777888888888865 44455778888888888888777766543 2 22 1133 33566666777778887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 416 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.+-.+... +......++ -..+++++|++.++.+
T Consensus 484 ~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777653 344444444 4567888888887654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=6.8 Score=40.56 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 411 LDRALDFIKTMP-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 411 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
..+|...++... ...+.....--+......++.+.+...+..+.......+....-+++++...|+.++|..+|+..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555432 11233333333334445556555555555554333334444555555555566666666665554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.8 Score=42.90 Aligned_cols=158 Identities=15% Similarity=0.069 Sum_probs=83.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH-----HHHhHHHHhhc----cCCchhHHHHHHHHHHcCCCCchhHH
Q 044812 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-----SLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLC 295 (547)
Q Consensus 225 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 295 (547)
..++....=.||-+.+++.+.......++.-... +|..++..++. ..+.+.+.+++..+.+.- |+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence 3455555667888888888877633333333222 23333333333 334566777777776652 343333
Q ss_pred H-HHHHHHHhcCCHHHHHHHHhcCCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 296 N-ALIDMYSKCGSLDCARRVFEDSSF------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 296 ~-~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
. .-.+.+...|++++|++.|++... +.....+--+.-.+...+++++|.+.|.++.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 2 334556667777777777764210 1122334445555666677777777777776642 2233344433333
Q ss_pred -HhccCcH-------HHHHHHHHHH
Q 044812 369 -CGRSGLI-------NEGLEIYNSV 385 (547)
Q Consensus 369 -~~~~g~~-------~~a~~~~~~~ 385 (547)
+...|+. ++|.++|.++
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 2344544 5555555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.5 Score=42.33 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccC
Q 044812 431 GALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495 (547)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 495 (547)
..|..++.+.|+.++|++.++.+.+..|. +..+...|+.++...+.+.++..++.+-.+...+++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 44666666777777777777777766543 344667777777777777777777777544434333
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.86 Score=41.73 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=25.2
Q ss_pred HHHCCCHHHHHHHHHHchhcCC-CCCChHHHHhHHHHhhccCCchhHHH
Q 044812 231 YVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQ 278 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~ 278 (547)
+....+.++|+..+.+...+.. ...-..++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 4566777777777765522211 11122345555566666666555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.22 E-value=2 Score=33.24 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
.....+..+.++|+-++-.+++.++ .+ .-.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l-~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNEL-KK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH-hh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3455677788888888888888887 33 4567777788888888888888888888888887774
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.14 E-value=4.5 Score=36.99 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHCCCHH---HHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc
Q 044812 222 YAWTAMINGYVQNGDLD---EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 286 (547)
.+...++.+|...+..+ +|.++++.+..+.+-+| ..+..-+..+.+.++.+.+.+.+..|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 35667777777776654 45555555522322222 23333344444455555555555555543
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.5 Score=40.21 Aligned_cols=145 Identities=7% Similarity=0.031 Sum_probs=93.1
Q ss_pred cchHHHHHHHHHhccC-ch----HHHHHHHHHHHhCCCCChhHHHHHHHHHHh--c----CCchhHHHHhccCCC-----
Q 044812 20 SATVQHFLQVSATHRS-LK----LTKQSHSQILSLGHISNPFVSTKLITAYAL--C----GQPTQSQLVFNSIQH----- 83 (547)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~----~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~----- 83 (547)
+.....++..+...+. ++ +...+++.+.+.|+..+..+|-+..-.... . ....+|..+|+.|++
T Consensus 57 ~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 57 GNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 3334555666666665 44 448899999999999898877764444433 2 246678889999975
Q ss_pred --CCcchHHHHHHHHHhcCCh----hHHHHHHHHhhhCCCCCCcch--HHHHHHHHccCCC--cHHHHHHHHHHHHhCCC
Q 044812 84 --KDVYLYNSLINGYVKNHGH----NEALELFSNMYYSNVSPDDFT--LATISKLSGEIKD--LNVGMLIHGLSIKIGFV 153 (547)
Q Consensus 84 --~~~~~~~~ll~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~ 153 (547)
++-.++..++.. ..+++ +.+..+|+.+.+.|...+... ...++..+....+ ...+..+++.+.+.|++
T Consensus 137 Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 333455555543 33333 567788888888787655442 2333333333322 34778889999999988
Q ss_pred CchhHHHHHHHHH
Q 044812 154 VDVILANSLMSMY 166 (547)
Q Consensus 154 ~~~~~~~~l~~~~ 166 (547)
+....|..+.-..
T Consensus 215 ik~~~yp~lGlLa 227 (297)
T PF13170_consen 215 IKYMHYPTLGLLA 227 (297)
T ss_pred cccccccHHHHHH
Confidence 8887777665443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.1 Score=34.22 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChh
Q 044812 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222 (547)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~ 222 (547)
+++.+.+.+++|+...+..+++.+.+.|++.....++.--.-+|.......+-.+.... .....-+.+++.++. .
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~-~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQY-PPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccC-hHHHHHHHHHHHHhh----h
Confidence 33334444555555555555555555555555444444332222222221111111110 000111344444433 2
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.+..++..+...|++-+|+++.+..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3556778888899999999998775
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.91 E-value=5.2 Score=36.91 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC---hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC-----Cchh
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-----HDVS 293 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 293 (547)
..|..+..++-+.-++.+++.+-+.-....|..|. ......+..++...+.++++.+.|+...+.... ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 45666666666666777777666554233333331 122334555556666666666666665542211 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 044812 294 LCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~ 314 (547)
++..|...|.+..++++|.-+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhh
Confidence 566666677776666665433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.17 Score=28.64 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
+|..+...|...|++++|.+.|+++++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677788888888888888888888888774
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.27 Score=37.68 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.-++...|+.+.|++.|.+.+.+-|.+++.|+.-+.++.-+|+.++|.+=+++..+..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999999999999999999887643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.57 E-value=6.9 Score=37.21 Aligned_cols=150 Identities=13% Similarity=0.016 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-cCCCCchhHH
Q 044812 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP---DIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPTTEIC 398 (547)
Q Consensus 323 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 398 (547)
...+|..++..+-+.|+++.|...+.++...+..+ .......-...+-..|+..+|...++...+. ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777788888888888888888777643211 2233333445556677778888887777652 1111111111
Q ss_pred HHHHHHhHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 399 ACVVDMLGRAGQLDRALDF-IKTMPVEPSPSIWGALVSASVMH------GNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
..+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112333333333334 7888899999999999888888888777776
Q ss_pred HcC
Q 044812 472 ASS 474 (547)
Q Consensus 472 ~~~ 474 (547)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.16 Score=29.29 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=19.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888743
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.19 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678889999999999999999996544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.09 E-value=5.6 Score=34.72 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=146.0
Q ss_pred CCHHHHHHHHHHchhcCCCC-CChHHHHhHHHHhhccCCchhHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIE-PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (547)
+....+...+... ...... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEA-LELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHH-HhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555544 222111 12455566666666677777776666666542 23445556666777777788888888
Q ss_pred HHHhcCC-CCCCh-hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 313 RVFEDSS-FNKDA-ITWSSIVS-GYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 313 ~~~~~~~-~~~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
..+.... ..++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8887632 12222 22333333 78889999999999999865221 12334444444456778899999999998875
Q ss_pred hcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 388 TYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 388 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.. .. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 196 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 42 33 3677888888888999999999999877 34454 445555666666777899999999999998886
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.97 E-value=12 Score=38.35 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=84.7
Q ss_pred HHHHHhcCCchhHHHHhccCCC--C---CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC
Q 044812 62 ITAYALCGQPTQSQLVFNSIQH--K---DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 136 (547)
++.+.+.+.+++|++.-+.... + -...+...|..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 5677777888888887776654 1 2235667777777788888888777777653 34445444444444444
Q ss_pred cHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhh
Q 044812 137 LNVGMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215 (547)
Q Consensus 137 ~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~ 215 (547)
......++ -.| ...+..+|..++..+.. .+... +++...+=....|..+-..-.-.-+ +.+
T Consensus 439 l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~---F~e~i~~Wp~~Lys~l~iisa~~~q----------~~q 500 (846)
T KOG2066|consen 439 LTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKG---FLELIKEWPGHLYSVLTIISATEPQ----------IKQ 500 (846)
T ss_pred cchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHH---HHHHHHhCChhhhhhhHHHhhcchH----------HHh
Confidence 43322221 111 11244566666666655 22222 2222222111112111111000000 001
Q ss_pred cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.. .+...-..|+..|...+++..|+..+-..
T Consensus 501 ~S-e~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 501 NS-ESTALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred hc-cchhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 00 12223344888899999999999998777
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.93 Score=28.88 Aligned_cols=51 Identities=4% Similarity=-0.080 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (547)
....++.++.+.|++++|.+..+.+.+. .|+..++.++...+.++|+..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567888999999999999999998753 46777888888888999998874
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=6.7 Score=34.53 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
.+-.=+..-.+.|++++|.+.|+.+..+....| ...+...++.++.+.++++.|....++.....
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 344445556788999999999998843333222 34455556666666777777766666666544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.50 E-value=27 Score=41.08 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
..+|....+...+.|+++.|...+-+.....-+..+....+-....|+...|+.++++.+++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 566777777777788888888776555322233345556667778888888888888888664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.33 E-value=3.9 Score=34.29 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCc----hhH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRI--KPT----TEI 397 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~----~~~ 397 (547)
.+..+...|++.|+.+.|.+.|.++.+....|. ...+..+|......+++..+.....+....... .++ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666777777777777777777766644443 234556666666777777777666665432111 111 122
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
|..+. +...+++.+|.+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23457787777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.27 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|.++..++.+|.+.|++++|.+++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999998754
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.22 E-value=11 Score=36.02 Aligned_cols=406 Identities=9% Similarity=0.034 Sum_probs=209.4
Q ss_pred HHHhccCCC-C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCC
Q 044812 75 QLVFNSIQH-K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152 (547)
Q Consensus 75 ~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 152 (547)
+++=+++++ | |+.+|-.|+.-+..++..++..+++++|..- .+--+..|..-+.+-....++...+.+|.+.+...+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 355556665 3 6789999999999999999999999999753 233456677777777777899999999999888755
Q ss_pred CCchhHHHHHHHHHHhcC-----C----hHHHHHHhccC--CCC-ChhhHHH---HHHHHHcCCCchhH---HHHHHHHh
Q 044812 153 VVDVILANSLMSMYVKCG-----K----FSECLNLFDEM--PQR-NVGSWNV---RISGHASSGDFSLV---VRSRRVFD 214 (547)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g-----~----~~~A~~~~~~~--~~~-~~~~~~~---li~~~~~~g~~~~a---~~a~~~~~ 214 (547)
. ...|...+..-.+.+ + +-+|.++.-.. .+| ...-|+. .+...-..|.+++- +...+.+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 444444444333322 1 22232222111 111 2223333 33333334444432 12333444
Q ss_pred hcCC-C---------ChhhHHHHHHHHH-------HCCCHHHHHHHHHHchh-cCCCC----CChHHHHhHHH-------
Q 044812 215 QMKR-R---------NVYAWTAMINGYV-------QNGDLDEALVLFLEMQL-KDRIE----PNKVSLVSVLP------- 265 (547)
Q Consensus 215 ~~~~-~---------~~~~~~~li~~~~-------~~~~~~~A~~~~~~m~~-~~~~~----p~~~~~~~ll~------- 265 (547)
++.. | |-..|..=++... ..--+-.|...+++... ..|.. .+..+++.+-+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 4332 1 1111111111111 01123344455544410 11211 12222222111
Q ss_pred ----Hhhcc-----CC-c-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHH
Q 044812 266 ----TCSSL-----IG-L-SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSG 333 (547)
Q Consensus 266 ----~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~ 333 (547)
--... ++ . ....-++++.... +.....+|----..+...++-+.|+..... +...|....+ +-..
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~--lse~ 342 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMF--LSEY 342 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhee--HHHH
Confidence 00000 00 0 0111111111111 122223333333334455666777776654 3333431111 1111
Q ss_pred HHhcCChHHHHHHHHHHH-------H-------cCC---------------CCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 334 YGLHGKGHEAVLLYNKMV-------C-------LGS---------------KPDIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~-------~-------~g~---------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
|.-.++.+.....|+... . .+. .-=...|...+++..+..-++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111111111111111110 0 001 01124466677777777888999999999
Q ss_pred HHHhcC-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCC--C
Q 044812 385 VINTYR-IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIW-GALVSASVMHGNSEMQDLAYKSLIQLEP--E 459 (547)
Q Consensus 385 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 459 (547)
+.+. + +.+++.++++++..++ .|+..-|..+|+-- ..-||...| +..+.-+...++-+.|..+|+..++.-. .
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9776 5 5678888898888665 57888899998753 334555543 5566677788999999999997665321 1
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
-..+|..++.--..-|+...+..+=++|.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 24578888888888888877766666553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.17 E-value=4.7 Score=33.15 Aligned_cols=131 Identities=10% Similarity=0.030 Sum_probs=75.9
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHhccCC
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG--KFSECLNLFDEMP 183 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 183 (547)
.+.+..+.+.+++|+...+..+++.+.+.|++.... ++++.++-+|.......+-.+.... -..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345555566778888888888888888888765443 3344454445443333322221111 1334445555543
Q ss_pred CCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..+..++..+...|++-+ |.+..+.....+......++.+..+.+|...-..+|+-.
T Consensus 90 ----~~~~~iievLL~~g~vl~---ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLE---ALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHH---HHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234456677777887777 777776655555555566777777777766555555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.45 Score=42.52 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=78.1
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-C------CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 044812 45 QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K------DVYLYNSLINGYVKNHGHNEALELFSNMYYSNV 117 (547)
Q Consensus 45 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 117 (547)
.--.+|.+....+...++..-....+++.++..+-+++. | +.. -...++.+ -.-++++++.++..=++.|+
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGi 131 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGI 131 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhcc
Confidence 334566677777777777777777889999888777653 2 222 12223333 33478899999999999999
Q ss_pred CCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhC
Q 044812 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151 (547)
Q Consensus 118 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 151 (547)
-||.+++..+|..+.+.+++..|.++.-.|+...
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888776654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.3 Score=35.08 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 408 AGQLDRALDFIKTM-PVEPS---PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
.++++++..+++.| ...|+ ..++. +..+...|++.+|.++|+.+.+..+..+..-..++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 55666666666555 22332 22222 2234555666666666666655555444444444445444554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.84 E-value=3.2 Score=32.31 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhh-CCCC-CchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccc
Q 044812 425 PSPSIWGALVSASVMHG---NSEMQDLAYKSLIQL-EPEN-PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 499 (547)
+...+--.+..++.+.. +..+.+.+++.+.+. .|.. ......|+-++.+.|+++.+.++++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--------- 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--------- 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---------
Confidence 33344444555555443 456666777777762 2332 234456667777888888888888776643
Q ss_pred eEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 044812 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540 (547)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (547)
.|+..++.++-+.+.++|.+.|+.
T Consensus 101 -----------------e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 101 -----------------EPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred -----------------CCCcHHHHHHHHHHHHHHhhccee
Confidence 234455666666667777777754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.5 Score=35.54 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=46.9
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPSPSIWG-ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
.+.++.+++..++..+ ..+|...... .-...+...|++.+|+.+|+.+.+..|..+..-..++.++...|+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 4567888888888777 3445433222 2234456778888888888887777776666666666666666663
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.8 Score=35.14 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
..+..+...|.+.|+.+.|++.|.++ ......+.. ..+..+|+...-.+++..+.....++...-..........-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788899999999999999999998 665555543 345667777788888888887777665432221111111111
Q ss_pred H-----HHHhcCCHHHHHHHHhcC
Q 044812 300 D-----MYSKCGSLDCARRVFEDS 318 (547)
Q Consensus 300 ~-----~~~~~g~~~~A~~~~~~~ 318 (547)
. .+...+++..|-+.|-+.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 1 123356777777766553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.13 Score=41.63 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccC
Q 044812 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++..
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~ 68 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS 68 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc
Confidence 355666667777777777887776665566777888888888887777777777743
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.04 E-value=14 Score=35.09 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE----PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
....+|..+...+.+.|.++.|...+.++.... +..+.+....+..+...|+..+|...++......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999998864 2256788888999999999999999999887733
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=14 Score=33.74 Aligned_cols=219 Identities=10% Similarity=-0.012 Sum_probs=112.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCCh----hHHHHHHHHhhhCCCCCCcchHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH----NEALELFSNMYYSNVSPDDFTLATI 127 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~l 127 (547)
.+|..+....+.++...|..+....+..-+..++...-...+.++.+.|+. .++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 467777777778887777655555555544566777777777788887764 4677777776433 2455555555
Q ss_pred HHHHccCCCc-----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 044812 128 SKLSGEIKDL-----NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202 (547)
Q Consensus 128 ~~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 202 (547)
+.+++..+.. ..+...+.... ..++..+-...+.++.+.|+.+....+..-+..+|...-..-+.++.+.+.
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 5555554321 22233332222 234666666777777777765444444444444444333333333333321
Q ss_pred -chhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHH
Q 044812 203 -FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281 (547)
Q Consensus 203 -~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 281 (547)
...+ .-.+...+..++...-...+.++.+.|+. .|+..+-.. .+.+ + .....+.++...|+. .+...+.
T Consensus 189 ~~~~~--~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~-L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~ 258 (280)
T PRK09687 189 DNPDI--REAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKE-LKKG---T--VGDLIIEAAGELGDK-TLLPVLD 258 (280)
T ss_pred CCHHH--HHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHH-HcCC---c--hHHHHHHHHHhcCCH-hHHHHHH
Confidence 1110 11223333445555555666666666663 344444333 2221 1 122344444555543 3444444
Q ss_pred HHHH
Q 044812 282 FAIR 285 (547)
Q Consensus 282 ~~~~ 285 (547)
.+.+
T Consensus 259 ~l~~ 262 (280)
T PRK09687 259 TLLY 262 (280)
T ss_pred HHHh
Confidence 4443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.73 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.+..++.+.|+.++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666665554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.87 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
.+++.|...|...|++++|+.+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666666677777777777776666553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=5.7 Score=38.08 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=87.2
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 446 (547)
-...|++-.|-+-+....+.+.-.|+.... ....+...|.++.+...+... .+.....+..+++....+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344566666655444444443333443333 334456778888888887766 2334566777888888888888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEE
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 510 (547)
...-+.++..+-.++......+..-...|-++++...|++....+.+ ....|+........|
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYF 438 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceec
Confidence 88888888777667766666666666678888888888887655443 333454443333333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.56 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=24.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
..+..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999988653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.29 E-value=12 Score=31.45 Aligned_cols=54 Identities=0% Similarity=-0.120 Sum_probs=24.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.....|.+++|+..++...+.+- .+.....-++++...|+-++|+.-|+.....
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34444555555554444332211 1112333445555555555555555554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.18 E-value=14 Score=32.05 Aligned_cols=18 Identities=22% Similarity=-0.018 Sum_probs=10.0
Q ss_pred HhcCChHHHHHHHHHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~ 352 (547)
.+..++++|...+...++
T Consensus 84 ykk~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIE 101 (288)
T ss_pred hhccChHHHHHHHHHHHH
Confidence 344466666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.98 E-value=4.7 Score=36.33 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC-----LGSKPDIITIVG 364 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 364 (547)
..++..++..+...|+.+.+...++++ .. +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345677888888888888888888773 21 44667888999999999999999888887765 477777666555
Q ss_pred HHHH
Q 044812 365 VLSA 368 (547)
Q Consensus 365 l~~~ 368 (547)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.92 E-value=3.5 Score=33.42 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=67.6
Q ss_pred CHHHHHHHHHH---HhccCcHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHhHhcCCHHHHHHHHHhCC-CCCCHHHHHH
Q 044812 358 DIITIVGVLSA---CGRSGLINEGLEIYNSVINTYRIKPTTEI-CACVVDMLGRAGQLDRALDFIKTMP-VEPSPSIWGA 432 (547)
Q Consensus 358 ~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ 432 (547)
+..+.+.|+.. -...++.+++..++..+. -+.|.... -..-...+...|++.+|..+|+++. ..|....-..
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHH
Confidence 34455555554 457789999999999886 44664332 2233455688999999999999983 2344444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
|+..|.....-..=...-+++++.++ ++.+ ..++..+....+...|.+
T Consensus 83 LlA~CL~~~~D~~Wr~~A~evle~~~-d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 83 LLALCLYALGDPSWRRYADEVLESGA-DPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhcCC-ChHH-HHHHHHHHHhccccchhh
Confidence 55444443333333333444444444 3333 334444444444444443
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.52 Score=36.18 Aligned_cols=38 Identities=39% Similarity=0.814 Sum_probs=29.7
Q ss_pred ccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCCCC
Q 044812 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546 (547)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 546 (547)
+++|+.+ |.|++|+++||+. .+..++...||.|+++.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~ 39 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEV 39 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhh
Confidence 5678766 9999999999988 344677778888887653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.41 E-value=13 Score=30.61 Aligned_cols=121 Identities=11% Similarity=-0.006 Sum_probs=59.1
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHH---H--HHHHHhcC
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNS---L--INGYVKNH 100 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~---l--l~~~~~~~ 100 (547)
-+...+..++|..-|.++.+.|...=+.. .-.........|+...|...|+.+-. +.+....- | .-.+..+|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 34455667777777777777665433322 22333445556677777777766543 11111111 1 11234556
Q ss_pred ChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHH
Q 044812 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149 (547)
Q Consensus 101 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 149 (547)
.++....-.+-+-..+-+.-...-..|.-+-.+.|++..|.+.|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666655555554332221222223344444455566666665555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.16 E-value=0.79 Score=25.78 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+|..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.75 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=15.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Q 044812 463 NYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777776654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.00 E-value=36 Score=35.26 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=89.9
Q ss_pred HHccCCCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhH
Q 044812 130 LSGEIKDLNVGMLIHGLSIKIGFVV---DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206 (547)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 206 (547)
.+.+.+.+++|..+-+... |..| ........|..+...|++++|-...-.|...+..-|...+..+...++...
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~- 441 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD- 441 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch-
Confidence 3344445555554443322 2222 234556677777888888888888888888888888777777777777443
Q ss_pred HHHHHHHhhcCC----CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHH
Q 044812 207 VRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282 (547)
Q Consensus 207 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 282 (547)
++.-++. -+...|..++..+.. .+...-.++..+- +++...-..++++. ..+
T Consensus 442 -----Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W------p~~Lys~l~iisa~------------~~q 497 (846)
T KOG2066|consen 442 -----IAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW------PGHLYSVLTIISAT------------EPQ 497 (846)
T ss_pred -----hhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC------ChhhhhhhHHHhhc------------chH
Confidence 3333332 255678888777776 3333333333222 22222111122111 001
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 044812 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 319 (547)
..+. .-+...-..|+..|...|+++.|..++-...
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 1111 1122233448888999999999998887655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.96 E-value=45 Score=36.41 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhcC--CchhHHHHhccCC
Q 044812 56 FVSTKLITAYALCG--QPTQSQLVFNSIQ 82 (547)
Q Consensus 56 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 82 (547)
.....++.+|.+.+ .++.|+.......
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 55566777777776 6666666555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.68 E-value=1 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=22.7
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 044812 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 176 (547)
+++.++.. +-+...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445544 456778888888888888888875
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.27 E-value=40 Score=35.01 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC-------cHHHHHHHHHHHHhCC
Q 044812 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD-------LNVGMLIHGLSIKIGF 152 (547)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~g~ 152 (547)
+...| .+|--|.++|++++|.++..+.... .......|...+..+....+ -+....-|++..+...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 34455 4566788999999999999666643 45566778888888877543 2355555666555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.04 E-value=6.2 Score=29.04 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=35.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 420 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
.+..-|++.+..+.+++|.+.+|+..|.++++-+...-.+....|..++.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 34567899999999999999999999999999988776544446766643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.93 E-value=74 Score=37.80 Aligned_cols=311 Identities=9% Similarity=0.034 Sum_probs=167.4
Q ss_pred HHHHHHHhcCChHHHHHHhccC----CCCChh-hHHHHHH-HHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Q 044812 161 SLMSMYVKCGKFSECLNLFDEM----PQRNVG-SWNVRIS-GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~-~~~~li~-~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~ 234 (547)
.|..+=.+++.+..|...++.- .+.+.. .+..++. .|..-+++|.+..+... +...++ ...-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~--r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR--RFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH--hhcCcc---HHHHHHHHHhh
Confidence 4555667888999999988883 222221 3334444 88888888875555443 111122 23345667788
Q ss_pred CCHHHHHHHHHHchhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL-CNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~ 312 (547)
|++..|...|+.+ .+ ..|+ ..+++.++......+.++...-..+-..... .+.... ++.=+.+--+.++++...
T Consensus 1463 g~~~da~~Cye~~-~q--~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1463 GNWADAAACYERL-IQ--KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred ccHHHHHHHHHHh-hc--CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 9999999999998 33 3344 6677878877777777777666544443332 222222 222334445666777666
Q ss_pred HHHhcCCCCCChhhHHHH--HHHHHhcCChH--HHHHHHHHHHHcCCCC--------C-HHHHHHHHHHHhccCcHHHHH
Q 044812 313 RVFEDSSFNKDAITWSSI--VSGYGLHGKGH--EAVLLYNKMVCLGSKP--------D-IITIVGVLSACGRSGLINEGL 379 (547)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~--~a~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~a~ 379 (547)
.... ..+..+|... +....+..+-+ .-.+..+.+++.-+.| + ...|..++..+.-. +.+.-
T Consensus 1539 ~~l~----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~- 1612 (2382)
T KOG0890|consen 1539 SYLS----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS- 1612 (2382)
T ss_pred hhhh----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH-
Confidence 6554 2333344333 22222222111 1112333333221111 0 12233333322111 01111
Q ss_pred HHHHHHHHhcCCCCchh------HHHHHHHHhHhcCCHHHHHHHHHhC----CCC-----CCHHHHHHHHHHHHHcCCHH
Q 044812 380 EIYNSVINTYRIKPTTE------ICACVVDMLGRAGQLDRALDFIKTM----PVE-----PSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~~~~~ 444 (547)
.+ ...++.++.. .|..-+..-....+..+-.--+++. ... --..+|....+.....|.++
T Consensus 1613 --~~---~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1613 --IE---ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred --HH---HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 11 1112233211 1211111111111111111111111 112 23568999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
.|...+-.+.+..+ +..+...+..+...|+...|..++++..+...+
T Consensus 1688 ~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99999888877774 568999999999999999999999998866553
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.81 E-value=5.6 Score=28.93 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=36.8
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 420 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
.+..-|++.+..+-+++|.+.+|+..|.++++-+......+...|..++
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3356688888888999999999999999999888765544445565554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.76 E-value=33 Score=33.61 Aligned_cols=177 Identities=8% Similarity=0.104 Sum_probs=102.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
.|.....+++..++......-...+..++ .+..+...|..+++.|..+ ..++-..+|+++.+..+. |...-..|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 34444555666666666666555555542 2234555677777777776 456677777777775332 22223333333
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPT------TEICACVVDMLGRAGQLDRALDFIKTM----PVEPSPSIWGALVSASV 438 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 438 (547)
|.+ ++...+..+|.++..+ +.|. .+.|..+...- ..+.+..+.+..+. +...-...+.-+..-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 433 6777777777776653 2331 22444444321 33555555555544 23334455566667777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
...++++|++++..+++.+..|..+...++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 78888888888888888776666666666555544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.69 E-value=10 Score=34.29 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..+.+-.+|.+.++++.|+++.+.++...|+++.-+..-+-+|.+.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456677788999999999999999999999999999999999999999999999998887643
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.45 E-value=34 Score=36.57 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCchhHHHHhccC
Q 044812 58 STKLITAYALCGQPTQSQLVFNSI 81 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~ 81 (547)
|..|+..|...|+.++|+++|...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l 530 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDL 530 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHH
Confidence 444555555555555555555444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.9 Score=38.15 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=48.7
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTMPVEPS---PSIWGALVSASVMHGNS 443 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~ 443 (547)
.|.++|++++|+..|...+ .+.| ++.++..-..+|.+..++..|..=....- ..| ...|.--+.+-...|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHhhH
Confidence 3556666666666666554 2344 55666656666666666655544333321 001 11222233333345667
Q ss_pred HHHHHHHHHHHhhCCCCCc
Q 044812 444 EMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~ 462 (547)
.+|.+-++.+++++|.+..
T Consensus 182 ~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhHHHHHhhCcccHH
Confidence 7777777777777776543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.18 E-value=22 Score=35.51 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+..-|..|..+..+.+++..|.+.|... .. |..|+-.+...|+-+....+-....+.|. .|...
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRA-RD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhh-cc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence 4556888888888888888888888776 22 45666666677776666666555555552 23344
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
.+|...|+++++.+++.+-+
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 56777888998888887655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.09 E-value=43 Score=34.26 Aligned_cols=248 Identities=12% Similarity=0.078 Sum_probs=140.6
Q ss_pred HHHCCCHHHHHHHHHHchhc-------CCCCCChHHHHhHHHHhhccC-----CchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 231 YVQNGDLDEALVLFLEMQLK-------DRIEPNKVSLVSVLPTCSSLI-----GLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
+....+.+.|+.+|+.+ .+ .+ .......+..+|.+.. +.+.|..++....+.| .|+.... +
T Consensus 259 ~g~~~d~e~a~~~l~~a-a~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--l 331 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLA-AESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYL--L 331 (552)
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHH--H
Confidence 34567899999999887 44 33 2234455555565533 5566888888888887 3333332 3
Q ss_pred HHHHHh---cCCHHHHHHHHhcCCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 299 IDMYSK---CGSLDCARRVFEDSSFNKDAITWSSIVSGYG----LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 299 ~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
..++.. ..+...|.++|......-....+-.+...|. ...+...|..++++.-+.| .|...--...+..+..
T Consensus 332 g~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 332 GVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 333332 2457788888876332333333333333332 3357788899999888887 4432222333333444
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh---Hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDML---GR----AGQLDRALDFIKTMPVEPSPSIWGALVSASVMH---- 440 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---- 440 (547)
+..+.+.-.+..+.+. +.......-..++... .. ..+.+.+..++.+...+-+......+...|...
T Consensus 411 -~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred -ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCC
Confidence 6666666555555433 3322111111111111 11 235666777777765555666666666665543
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC-C--CHHHHHHHHHHHHhCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS-R--RWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~~ 491 (547)
.+++.|...+.++.... ......++.++... | .+..|.++++...+.+
T Consensus 489 ~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 35888888888877666 56666777776543 1 2677777777765533
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.04 E-value=20 Score=30.26 Aligned_cols=128 Identities=10% Similarity=0.088 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHHHHhcCCCCch----hHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG--VLSACGRSGLINEGLEIYNSVINTYRIKPTT----EICA 399 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 399 (547)
.|..++.... .+.. +.......+....-+-...++.. +...+...|++++|+..++..... +.|. ..--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3555555443 2333 44455555555422222222222 344578889999999999877642 2222 2223
Q ss_pred HHHHHhHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 400 CVVDMLGRAGQLDRALDFIKTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.|.......|.+++|+..++....+ -.......-+..+...|+-++|...|++.++.++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 4566778899999999999987422 1233445556789999999999999999999874
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.84 E-value=2.6 Score=26.87 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
.+.-++.+.|++++|.+..+.+++.+|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566789999999999999999999999876443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.77 E-value=1.6 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.9
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999998754
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.70 E-value=3.5 Score=36.79 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++....+.|...|.+.+|.++-++++..+|-+...+..|+..|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455566788999999999999999999999999999999999999999888888888874
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.52 E-value=1.1 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
++..++.++.+.|++++|.++++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998764
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.12 E-value=2.1 Score=22.87 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.|..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345556666666666666666666666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.02 E-value=8.4 Score=28.37 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+..+-++.+....+.|++......+.+|-+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666666667788888888888888888888888888887766543 23336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.95 E-value=1.2 Score=35.80 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=65.9
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhH
Q 044812 25 HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104 (547)
Q Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 104 (547)
.++..+...+.+..+...++.+...+...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34556666788888888999999888777899999999999999888999998884433 334566777778888888
Q ss_pred HHHHHHHhhh
Q 044812 105 ALELFSNMYY 114 (547)
Q Consensus 105 A~~~~~~m~~ 114 (547)
|.-++..+..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888777643
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.45 E-value=2.4 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=25.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
|
... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.36 E-value=2 Score=26.08 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 465 VSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988644
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.11 E-value=13 Score=33.66 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=62.1
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 044812 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359 (547)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 359 (547)
.|.+.+..+...++..-....+++.+..++-++.-.|+ ...+ +.++.+. .-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 34444555555555555556667777766644321222 1111 1222222 23566777777777778888888
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINT 388 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 388 (547)
.+++.+++.+.+.+++.+|..+.-.|+.+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888777766554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.10 E-value=6.3 Score=31.45 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=43.5
Q ss_pred CHHHHHHHHHH---HhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHhHhcCCHHHHHHHHHhCCCCC
Q 044812 358 DIITIVGVLSA---CGRSGLINEGLEIYNSVINTYRIKPTTE-ICACVVDMLGRAGQLDRALDFIKTMPVEP 425 (547)
Q Consensus 358 ~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 425 (547)
+....+.|+.. -...++.+++..++..+. -+.|+.. .-..-...+...|++++|..+|++....+
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34445555544 345889999999999886 4456432 22223445678999999999999995333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.96 E-value=25 Score=29.00 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHH-
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE-ICACV- 401 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l- 401 (547)
..|..-+. +.+.++.++|+.-|..+.+.|...-+. .-..........|+...|...|.++-+. .-.|-+. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34444333 456788899999999998876543211 1122233467789999999999998765 2223221 11122
Q ss_pred -HHHhHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 402 -VDMLGRAGQLDRALDFIKTMPVEPS---PSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 402 -~~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
...+...|.+++.....+.+....+ ...-..|.-+-.+.|++..|...|.++...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2345678999999888888732222 234466777778999999999999998763
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.34 E-value=36 Score=30.29 Aligned_cols=222 Identities=16% Similarity=0.178 Sum_probs=119.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcC---CC--CCChHHHHhHHHHhhccCCchhHHHHHHHHHH-----cCCCCchh
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKD---RI--EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-----KELNHDVS 293 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 293 (547)
.-.+|..+.+.|++++.+..|.++ ... .+ .-+....+.++.-.+...+.+....+++.-.+ .+-..-..
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~ql-LTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQL-LTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 344566677777777777777666 211 11 22344566666655555555555444443322 11112223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--C-----C-------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDSS--F-----N-------KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPD 358 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~-----~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 358 (547)
|-..|...|...|.+.+...+++++. + . .-...|..-|..|....+-.+...+|++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 44567778888888887777776421 0 1 112357777888888888777777887765432 2333
Q ss_pred HHHHHHHHHHH-----hccCcHHHHHHHHHHHHHhcCC--CCch---hHHHHHHHHhHhcCC----HHHHHHHHHhCCCC
Q 044812 359 IITIVGVLSAC-----GRSGLINEGLEIYNSVINTYRI--KPTT---EICACVVDMLGRAGQ----LDRALDFIKTMPVE 424 (547)
Q Consensus 359 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 424 (547)
+. ...+|+-| .+.|.+++|..-|-+..+.+.- .|.. --|..|...+.+.|- -.+|. -....
T Consensus 227 Pl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred hH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 33 33445544 4678888887654444443322 2322 225556666666551 11111 01233
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 425 PSPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
|.......++.+|.. ++..+-++++..
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 455567778887754 455555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.28 E-value=84 Score=34.54 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCchhHHHHHHHHHHhcC--ChHHHHHHhccCC
Q 044812 153 VVDVILANSLMSMYVKCG--KFSECLNLFDEMP 183 (547)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 183 (547)
.|+ .....++..|.+.+ .+++|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 445 44566778888877 6777777766655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.08 E-value=16 Score=36.47 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=65.4
Q ss_pred HHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHH
Q 044812 65 YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144 (547)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 144 (547)
..+.|+.+.|.++..+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34556666666654433 3445688888888888888888888776543 445666666777776666665
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccC
Q 044812 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 145 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
....+.|. .|.-..+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 55555552 233344566778888888877654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.04 E-value=9.7 Score=32.26 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCchHHHHHHHHHcCCCHH
Q 044812 406 GRAGQLDRALDFIKTMPVEP---SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE----PENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 478 (547)
.+.|+ ++|.+.|-.+...| ++.....|. .|....|.++++.++-+++++. ..|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 56666666663222 344444444 4445678999999999998863 346888999999999999988
Q ss_pred HHH
Q 044812 479 AVA 481 (547)
Q Consensus 479 ~A~ 481 (547)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.77 E-value=42 Score=30.72 Aligned_cols=136 Identities=11% Similarity=0.028 Sum_probs=61.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHhcCCCCchhHHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG-LINEGLEIYNSVINTYRIKPTTEICAC 400 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 400 (547)
++...-...+.++.+.++ +.+...+..+.+ .+|...-...+.++...+ .-+.+...+-.+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444444555555544 344444444444 233333333333444332 12334444444432 234444555
Q ss_pred HHHHhHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 401 VVDMLGRAGQLDRALDFI-KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
.+.++++.|+. .|...+ +.+. .++ .....+.++...|+. +|...+.++.+..| |+.+-....+++
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 55666666653 333333 3332 222 223455666666664 46666666666555 444444444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.60 E-value=3.1 Score=37.90 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=67.3
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
..-|.++|.+++|.+.|.+. ...| +++++..-..+|.+...+..|+.--..++.++..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 34678999999999999875 5667 888888888899999999988888888887776555667666666666777777
Q ss_pred HHHHHHHHH
Q 044812 480 VAELRTMMK 488 (547)
Q Consensus 480 A~~~~~~m~ 488 (547)
|.+=++...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 766665543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.57 E-value=36 Score=29.89 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccC
Q 044812 159 ANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
|..-..+|....++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 344445566666677666655543
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=81.51 E-value=26 Score=28.09 Aligned_cols=88 Identities=7% Similarity=0.042 Sum_probs=54.6
Q ss_pred HHhCCCCCh--hHHHHHHHHHHhcCCchhHHHHhccCCC---------CCcchHHHHHHHHHhcCC-hhHHHHHHHHhhh
Q 044812 47 LSLGHISNP--FVSTKLITAYALCGQPTQSQLVFNSIQH---------KDVYLYNSLINGYVKNHG-HNEALELFSNMYY 114 (547)
Q Consensus 47 ~~~g~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~ 114 (547)
.+.+..++. ...|+++.-.+..+++...+.+++.+.. .+..+|+.++.+.++..- --.+..+|..|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 444444443 3457777777777777777777776632 344567777777655544 3445666666666
Q ss_pred CCCCCCcchHHHHHHHHccC
Q 044812 115 SNVSPDDFTLATISKLSGEI 134 (547)
Q Consensus 115 ~~~~p~~~~~~~l~~~~~~~ 134 (547)
.+.+++..-|..++.++.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 66666666777777666554
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=81.41 E-value=3.7 Score=22.40 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
|+.+.+..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888899999998888888888777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.33 E-value=12 Score=32.08 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHH
Q 044812 89 YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSMY 166 (547)
Q Consensus 89 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~ 166 (547)
-+..+..+.+.+...+++...++-.+... -|..+-..+++.++-.|++++|..-++..-+.. ..+-..+|..+|++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 44556777888888888888877776532 256667778888888888888888777765543 223345666666543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.60 E-value=8.9 Score=32.81 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=53.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS---NYVSLSN 469 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~ 469 (547)
.+..++.+.+.+++.+|+...+.- +.+| |..+-..+++.++-.|++++|..-++-+-++.|.... .|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345567788889999999888654 5556 4556777888999999999999999998888876433 4444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 5e-11
Identities = 29/253 (11%), Positives = 73/253 (28%), Gaps = 18/253 (7%)
Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
++ +++ + +R+ + + + + + + G ++
Sbjct: 28 KILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLE------- 80
Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
+ + P + L +L + L + G + +L+ A
Sbjct: 81 -----DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 301 MYSKCGSLDCARRVFE------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
L A + +++++ G+ G E V + + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
PD+++ L GR +E ++ +K A ++ RA L
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 415 LDFIKTMPVEPSP 427
T + P
Sbjct: 256 HKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 1e-04
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 61 LITAYALCGQPTQSQLVFNSI-------QHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
L Q + + + + +YN+++ G+ + E + + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 114 YSNVSPDDFTLATI 127
+ ++PD + A
Sbjct: 193 DAGLTPDLLSYAAA 206
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 14/144 (9%), Positives = 49/144 (34%), Gaps = 6/144 (4%)
Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR----N 186
+ ++ + +++H + ++ + + N++M + + G F E + + + +
Sbjct: 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199
Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
+ S+ + + + R +QM + + + D L +
Sbjct: 200 LLSYAAALQCMGRQDQDAGTI--ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 247 MQLKDRIEPNKVSLVSVLPTCSSL 270
++ + P V+ +
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDV 281
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 69/482 (14%), Positives = 148/482 (30%), Gaps = 118/482 (24%)
Query: 29 VSATHRSLKLTKQSHSQI--LSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
S K+ + +I L+L + ++P T L L Q + +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 87 YLYNSL---INGYVKNHGHNEALELFSNMYYSNVSPDDF-----TLATISKLSGEIKDLN 138
+S+ + +K+ + L + N+ + + F L T ++ L+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLT-TRFKQVTDFLS 282
Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL-FDEMPQRNVGSWNVRISGH 197
H I + + + + S+ + L+ ++P+
Sbjct: 283 AATTTH---ISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPRE------------ 321
Query: 198 ASSGD---FSLVVRSRRVF----DQMKRRNVYAWTAMINGYVQNGDLDE------ALVLF 244
+ + S++ S R D K N T +I + + E L +F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 245 ----------LEMQLKDRIEPNKVSLVSVLPTCSSLI---GLSGGKQIHG--FAIRKELN 289
L + + + + V +V SL+ I ++ +L
Sbjct: 382 PPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY-----GLHGKG---H 341
++ +L +++D Y+ + F+ + Y G H K
Sbjct: 441 NEYALHRSIVDHYN-------IPKTFDSDDLIPPYL------DQYFYSHIGHHLKNIEHP 487
Query: 342 EAVLLYNKMVC----LGSKPDIITIVGVLSACGRSGLIN--EGLEIYNSVINTYRIKPTT 395
E + L+ + L K I + ++N + L+ Y I P
Sbjct: 488 ERMTLFRMVFLDFRFLEQK---IRHDS-TAWNASGSILNTLQQLKFYKPYIC--DNDPKY 541
Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEP----SPSIWGALVSASVMHGNSEMQDLAYK 451
E ++ LDF+ +E S L+ ++M + + + A+K
Sbjct: 542 E------------RLVNAILDFLPK--IEENLICSKYT--DLLRIALMAEDEAIFEEAHK 585
Query: 452 SL 453
+
Sbjct: 586 QV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 84/553 (15%), Positives = 162/553 (29%), Gaps = 179/553 (32%)
Query: 18 YTSATVQHFLQ----VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY-------- 65
+ + H + VS T R +++ FV L Y
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK------FVEEVLRINYKFLMSPIK 99
Query: 66 ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
QP+ ++ + + LYN ++F+ NVS L
Sbjct: 100 TEQRQPSMMTRMYIEQRDR---LYNDN--------------QVFAKY---NVSRLQPYLK 139
Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
L E++ +LI G+ +G GK
Sbjct: 140 LRQALL-ELRP-AKNVLIDGV---LG-----------------SGK-------------- 163
Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
+W V S +V +M ++ W +N ++N + E + L
Sbjct: 164 ---TWVA-----------LDVCLSYKVQCKMDF-KIF-W---LN--LKNCNSPETV---L 199
Query: 246 EMQ--LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
EM L +I+PN S H I+ ++ S+ L
Sbjct: 200 EMLQKLLYQIDPNWTSRSD-----------------HSSNIKLRIH---SIQAEL----- 234
Query: 304 KCGSLDCARRVFEDSSFNK-----DAITWSS-IVSGYGLHGKGHEAVLL--YNKMVCLGS 355
RR+ + + + ++ + + L K +LL K V
Sbjct: 235 --------RRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCK----ILLTTRFKQVTDFL 281
Query: 356 KPDIITIVGVLSACGRSGLI-NEGLEIYNSVINTYRIKPTT---EICAC---VVDMLGRA 408
T + + L +E + ++ +P E+ + ++ +
Sbjct: 282 SAATTTHISLDHH--SMTLTPDEVKSLLLKYLD---CRPQDLPREVLTTNPRRLSIIAES 336
Query: 409 GQ--LDRALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPEN---PS 462
+ L D K + + +I + +S+ E + + + L P + P+
Sbjct: 337 IRDGLAT-WDNWKHVNCDKLTTI----IESSLNVLEPAEYRKM-FDRLSVF-PPSAHIPT 389
Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG-----KTHCFSVADKAH 517
LS ++ + D + + + K ++K P S ISI K + H
Sbjct: 390 I--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-H 446
Query: 518 PCSVSIYEMLDDL 530
V Y +
Sbjct: 447 RSIVDHYNIPKTF 459
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 6e-05
Identities = 49/340 (14%), Positives = 104/340 (30%), Gaps = 89/340 (26%)
Query: 12 LVTSRNYT---SATVQHFLQVSATHRSLKLTKQSHSQILS--LGHIS----------NPF 56
L+T+R + +S H S+ LT +L L NP
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 57 VSTKLITAYALCGQPTQSQLV-FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
++ + + L +++ +H + ++I + E ++F +
Sbjct: 329 -------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-- 379
Query: 116 NVSPDD--FTLATISKLSGEIKDLNVGML--------------------IHGLSIKIGFV 153
V P +S + ++ +V ++ I + +++
Sbjct: 380 -VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 154 VDVILA--NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS----SGDFSLVV 207
++ A S++ Y + + D +P + I H +L
Sbjct: 439 LENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF- 493
Query: 208 RSRRVF-D----QMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQL-KDRIEPNK--- 257
R VF D + K R + AW A +G + N +++ K I N
Sbjct: 494 --RMVFLDFRFLEQKIRHDSTAWNA--SGSILN--------TLQQLKFYKPYICDNDPKY 541
Query: 258 ----VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
+++ LP + S + +R L +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL----LRIALMAEDE 577
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.76 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.75 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.69 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.69 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.6 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.27 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.26 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.22 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.22 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.18 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.18 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.17 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.05 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.03 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.99 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.87 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.5 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.47 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.46 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.37 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.31 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.24 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.23 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.04 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.82 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.67 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.49 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.77 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.62 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.41 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.47 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.22 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.09 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.86 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.4 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.93 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.22 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.19 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.93 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.18 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.29 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.25 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.37 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.71 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 85.01 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.62 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 84.55 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.86 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.97 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.59 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.37 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.16 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=324.85 Aligned_cols=457 Identities=10% Similarity=0.043 Sum_probs=341.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCcchHHHHHHHHHhcC
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYVKNH 100 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~ 100 (547)
+..++..+...|++++|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 455555566666666666666666543 3455666666666666666666666666652 355556666666666666
Q ss_pred ChhHHHHHHHHhhhC---------------CCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044812 101 GHNEALELFSNMYYS---------------NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165 (547)
Q Consensus 101 ~~~~A~~~~~~m~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 165 (547)
++++|.++|+++... +..++..+|+.++.++.+.|++++|..+|+++.+.+ +.+...+..+...
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 243 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSN 243 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHh
Confidence 666666666632211 122234556666666666666666666666666543 2233344444433
Q ss_pred HHhcCChHHHHHH---hccCCCCC----hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC--CChhhHHHHHHHHHHCCC
Q 044812 166 YVKCGKFSECLNL---FDEMPQRN----VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR--RNVYAWTAMINGYVQNGD 236 (547)
Q Consensus 166 ~~~~g~~~~A~~~---~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~ 236 (547)
+...+..+.+... +..+...+ ...|+.++..|.+.|++++ |.++|+++.+ ++..+|+.++..|.+.|+
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR---AEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH---HHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH---HHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 3322221111110 11111111 1133444556667777777 8888988876 789999999999999999
Q ss_pred HHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044812 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316 (547)
Q Consensus 237 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (547)
+++|+++|+++ ...+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 321 ~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 321 FIDVLAITTKI-LEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHHHHHHH-HHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999 4432 3467789999999999999999999999998665 6678899999999999999999999998
Q ss_pred cC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 044812 317 DS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394 (547)
Q Consensus 317 ~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 394 (547)
++ .. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 74 11 4567799999999999999999999999998864 3478899999999999999999999999998752 447
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-------PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|++.++++.+.+|+++.+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 889999999999999999999999987 44677 789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 466 SLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.++.+|.+.|++++|.+.++++.+..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=326.40 Aligned_cols=413 Identities=10% Similarity=0.026 Sum_probs=315.7
Q ss_pred HHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHH
Q 044812 65 YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144 (547)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 144 (547)
+...|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34456666666666666666667777777777777777777777777764 3456666777777777777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-------------------ChhhHHHHHHHHHcCCCchh
Q 044812 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-------------------NVGSWNVRISGHASSGDFSL 205 (547)
Q Consensus 145 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 205 (547)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 765432 556667777777777777777777777754332 25567777777777777776
Q ss_pred HHHHHHHHhhcC---CCChhh--------------------------------------HHHHHHHHHHCCCHHHHHHHH
Q 044812 206 VVRSRRVFDQMK---RRNVYA--------------------------------------WTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 206 a~~a~~~~~~~~---~~~~~~--------------------------------------~~~li~~~~~~~~~~~A~~~~ 244 (547)
|.+.|+++. ..+... |+.++..|.+.|++++|.++|
T Consensus 219 ---A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 219 ---AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp ---HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 444444443 222222 333466677899999999999
Q ss_pred HHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC
Q 044812 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNK 322 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 322 (547)
+++ .+. +++..++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++++. .+.
T Consensus 296 ~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 296 SSI-NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp HTS-TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHh-hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 999 443 5889999999999999999999999999999877 4578889999999999999999999998741 145
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 323 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+. .+.+..+|..++
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 448 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLG 448 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHH
Confidence 67889999999999999999999999998853 336789999999999999999999999999864 245889999999
Q ss_pred HHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-CchHHHHHHHHHc
Q 044812 403 DMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL------EPEN-PSNYVSLSNLYAS 473 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~~~ 473 (547)
.+|.+.|++++|.++|+++ . ...+..+|..++.+|.+.|++++|+++|+++.+. +|.+ ..+|..++.+|.+
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999998 2 2346889999999999999999999999999987 4443 5689999999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 044812 474 SRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~ 491 (547)
.|++++|.++++++.+.+
T Consensus 529 ~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC
Confidence 999999999999998765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-27 Score=225.52 Aligned_cols=374 Identities=12% Similarity=0.080 Sum_probs=260.7
Q ss_pred HHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHH
Q 044812 64 AYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140 (547)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 140 (547)
.+.+.|++++|++.|+.+.+ | +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34444555555555544421 2 22233344444445555555555555544432 22334455555555555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCC
Q 044812 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220 (547)
Q Consensus 141 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~ 220 (547)
...|+++.+.. +.+...+..+..++.+.|++++|...|+++. ...+.+
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------------------~~~p~~ 134 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL-------------------------------QYNPDL 134 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-------------------------------HHCTTC
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------HhCCCc
Confidence 55555554432 2233344455555555555555555444432 222335
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (547)
...+..+...+...|++++|.+.|+++ ... .+.+..++..+...+...|++++|...++++.+.+ +.+...+..+..
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKA-IET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 566777888888888999999988888 332 23346778888888888888888888888888875 445677888888
Q ss_pred HHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+...|++++|...|++. ...| +..++..+...|...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999888762 2234 56778888999999999999999999998853 22467888888999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
.+.|+++.+.. +.+..++..+...+.+.|++++|...++++ ...| +..++..+..++.+.|++++|...++++++.
T Consensus 291 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 291 EDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999988652 457788889999999999999999999887 4445 4678889999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCC
Q 044812 457 EPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~ 476 (547)
.|.++..|..++.++...|+
T Consensus 369 ~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHhHHHHHHHccC
Confidence 99999999999988877664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=240.81 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=175.6
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC---------chhHHHHHHHHHHcCCCCc
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG---------LSGGKQIHGFAIRKELNHD 291 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~ 291 (547)
...++.+|.+|++.|++++|+++|++| ...|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M-~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEA-RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 346888999999999999999999999 889999999999999999987664 5789999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
..+|+++|.+|++.|++++|.++|++| ++.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999874 68899999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (547)
|++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999877 9999999999999988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=242.59 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=165.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC---------cHHHHHHHHHHHHhCCCCchh
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---------LNVGMLIHGLSIKIGFVVDVI 157 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 157 (547)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35778888899999999999999999988999999999999998887654 578889999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCH
Q 044812 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237 (547)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 237 (547)
+|++||.+|++.|++++|.++|++|.+.+. .||..+|+.+|.+|++.|++
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------------~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------------QPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------------------------------CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------------CCccceehHHHHHHHHCCCH
Confidence 999999999999999999999988876555 68888999999999999999
Q ss_pred HHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044812 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (547)
++|.++|++| .+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 157 ~~A~~l~~~M-~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 157 DKAYEVDAHM-VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999 888999999999999999999999999999999999999999999999998888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-25 Score=216.11 Aligned_cols=376 Identities=13% Similarity=0.094 Sum_probs=308.6
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCCh
Q 044812 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGH 102 (547)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 102 (547)
++..+...|++++|.+.++.+.+.. +.++..+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 4566778999999999999998885 44567777888889999999999999987653 4667899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCC-cchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 044812 103 NEALELFSNMYYSNVSPD-DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 103 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
++|.+.|+++.+. .|+ ..+|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999875 354 4578999999999999999999999999875 34566778888999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHH
Q 044812 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261 (547)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~ 261 (547)
+.+.+ +.+..+|..+...+...|++++|+..|+++ ... .+.+...+.
T Consensus 161 al~~~-------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~ 207 (388)
T 1w3b_A 161 AIETQ-------------------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-VTL-DPNFLDAYI 207 (388)
T ss_dssp HHHHC-------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHH-CTTCHHHHH
T ss_pred HHHhC-------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhc-CCCcHHHHH
Confidence 64321 235677888888899999999999999888 442 123456778
Q ss_pred hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCC
Q 044812 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGK 339 (547)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~ 339 (547)
.+...+...|++++|...+.+..+.. +.+..++..+..+|.+.|++++|...|++. ...| +..+|..+...+.+.|+
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 88888889999999999998888765 446778888999999999999999999873 2233 56788999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHH
Q 044812 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 419 (547)
+++|...|+++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...|+
T Consensus 287 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998863 457888999999999999999999999998753 23467888999999999999999999998
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCC
Q 044812 420 TM-PVEPS-PSIWGALVSASVMHGN 442 (547)
Q Consensus 420 ~~-~~~p~-~~~~~~l~~~~~~~~~ 442 (547)
++ ...|+ ...|..+...+...|+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCCCHHHHHhHHHHHHHccC
Confidence 87 55564 5678888777766553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=209.88 Aligned_cols=265 Identities=10% Similarity=-0.017 Sum_probs=217.9
Q ss_pred hhhHHHHHHHHHH---CCCHHHHHHHHHHchhc-----CCCCC--------ChHHHHhHHHHhhccCCchhHHHHHHHHH
Q 044812 221 VYAWTAMINGYVQ---NGDLDEALVLFLEMQLK-----DRIEP--------NKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284 (547)
Q Consensus 221 ~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 284 (547)
...+......+.. .|++++|+.+|+++ .. ....| +..++..+...+...|+++.|...++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKA-ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHH-HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHH-HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555554 89999999999988 44 21122 34567788888999999999999999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044812 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362 (547)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 362 (547)
+.... ...+..+..++...|++++|...+++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+
T Consensus 265 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 265 ELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 87644 788888999999999999999999862 22 3466788899999999999999999999998863 2256788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHH
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSIWGALV 434 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~ 434 (547)
..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++ +..++ ...|..+.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 888999999999999999999988652 336778888999999999999999999887 22222 44888899
Q ss_pred HHHHH---cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 435 SASVM---HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 435 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.++.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999 9999999999999999999999999999999999999999999999987654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=209.21 Aligned_cols=438 Identities=8% Similarity=-0.036 Sum_probs=310.7
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHh
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVK 98 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~ 98 (547)
.+......+...|++++|...++.+.+.+ |++..+..+..++.+.|++++|+..|+.+.+ | +..+|..+..++.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45677788888999999999999999986 7899999999999999999999999988753 3 45688889999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCChHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL---MSMYVKCGKFSEC 175 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~~A 175 (547)
.|++++|...|+.+.+.+. ++......++..+........+.+.+..+...+..|+......- ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988753 34444444444333322222222222211111111110000000 0000000111111
Q ss_pred HHHhccCC---------CC-ChhhHHHHHHHHHc---CCCchhHHHHHHHHhh-----c--C-------CCChhhHHHHH
Q 044812 176 LNLFDEMP---------QR-NVGSWNVRISGHAS---SGDFSLVVRSRRVFDQ-----M--K-------RRNVYAWTAMI 228 (547)
Q Consensus 176 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~a~~a~~~~~~-----~--~-------~~~~~~~~~li 228 (547)
...+.... .+ +...+......+.. .|++++|....+-... . . +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11111111 11 12233333333443 5666663332222222 1 0 12456788899
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
..+...|++++|+..|+++ ... .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~-l~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKA-IEL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHH-HHH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHH-Hhh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999998 443 3347788899999999999999999999998765 45677899999999999999
Q ss_pred HHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 309 DCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 309 ~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
++|...|++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999872 12 4466789999999999999999999999998863 3356788899999999999999999999987
Q ss_pred HhcCCCCc----hhHHHHHHHHhHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 387 NTYRIKPT----TEICACVVDMLGR---AGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 387 ~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
+...-.++ ...+..+...+.. .|++++|...++++ ...| +..++..+..++...|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 65322222 3388899999999 99999999999987 2334 57789999999999999999999999999999
Q ss_pred CCCCchHHHH
Q 044812 458 PENPSNYVSL 467 (547)
Q Consensus 458 ~~~~~~~~~l 467 (547)
|.++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988777666
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=201.73 Aligned_cols=426 Identities=10% Similarity=-0.006 Sum_probs=222.4
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHh
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVK 98 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 98 (547)
.+......+...|+++.|...++.+.+.. +.++..+..+...|.+.|++++|++.|+.+.+ .+..++..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 46777778888888888888888888875 45678888888888888888888888887643 356677788888888
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~ 176 (547)
.|++++|...|+.+.. .|+... ..+..+...+....+...++.+.... ..+........+..+....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 8888888888863322 222211 12223333444566777777765431 0111112233445566677777777
Q ss_pred HHhccCCCCChh---hHHHHHHHHHcCC--------CchhHHHHHHHHhhcCC---CCh-------hhHHHHHHHHHHCC
Q 044812 177 NLFDEMPQRNVG---SWNVRISGHASSG--------DFSLVVRSRRVFDQMKR---RNV-------YAWTAMINGYVQNG 235 (547)
Q Consensus 177 ~~~~~~~~~~~~---~~~~li~~~~~~g--------~~~~a~~a~~~~~~~~~---~~~-------~~~~~li~~~~~~~ 235 (547)
..+......+.. ....+...+...+ ++++ |...++.+.+ .+. .+|..+...+...|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~---A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK---STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH---HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH---HHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 777776654433 2222222222221 2333 4444443322 111 23444455555566
Q ss_pred CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044812 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315 (547)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (547)
++++|+..|++. .. ..|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|
T Consensus 258 ~~~~A~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQES-IN--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHH-HH--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-Hh--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666666666555 33 23334555555555555666666666655555543 234445555555555555555555555
Q ss_pred hcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC
Q 044812 316 EDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393 (547)
Q Consensus 316 ~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 393 (547)
++. .. +.+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...-.+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 441 11 2233445555555555555555555555555432 12334455555555555555555555555443210000
Q ss_pred ----chhHHHHHHHHhHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 394 ----TTEICACVVDMLGRA----------GQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 394 ----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
....+......+.+. |++++|...+++. ...| +...+..+..++...|++++|.+.|+++.+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 011122223334444 5555555555444 1122 33444555555555555555555555555555
Q ss_pred CCCC
Q 044812 458 PENP 461 (547)
Q Consensus 458 ~~~~ 461 (547)
|.++
T Consensus 493 ~~~~ 496 (537)
T 3fp2_A 493 RTMD 496 (537)
T ss_dssp --CH
T ss_pred CCcH
Confidence 4443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=192.62 Aligned_cols=344 Identities=12% Similarity=0.060 Sum_probs=228.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044812 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164 (547)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 164 (547)
+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+++.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34567777777777788888888887777642 2356667777777788888888888888877765 345677777888
Q ss_pred HHHhcCChHHHHHHhccCCCCCh------hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHH
Q 044812 165 MYVKCGKFSECLNLFDEMPQRNV------GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (547)
+|.+.|++++|...|+++.+.+. ..+..++..+. ...+..+...+...|+++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE----------------------MQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHcCCHH
Confidence 88888888888888877755322 23333322211 112334466678888888
Q ss_pred HHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 044812 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318 (547)
Q Consensus 239 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (547)
+|+..|+++ ... .+.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++
T Consensus 161 ~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 161 AAIAFLDKI-LEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887 332 23456677778888888888888888888887764 456677788888888888888888888763
Q ss_pred -CCCCC-hhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHH
Q 044812 319 -SFNKD-AITWSSI------------VSGYGLHGKGHEAVLLYNKMVCLGSKPD-----IITIVGVLSACGRSGLINEGL 379 (547)
Q Consensus 319 -~~~~~-~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~ 379 (547)
...|+ ...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 22333 3334333 66777777777777777777764 343 335666777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHHcC----
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSA------------SVMHG---- 441 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~---- 441 (547)
..++++.+.. +.+...+..+..+|...|++++|...++++ ...|+ ...+..+..+ |...|
T Consensus 316 ~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 7777776541 235667777777777777777777777766 44453 4455555422 22233
Q ss_pred -CHHHHHHHHHH-HHhhCCC
Q 044812 442 -NSEMQDLAYKS-LIQLEPE 459 (547)
Q Consensus 442 -~~~~a~~~~~~-~~~~~~~ 459 (547)
+.+++.+.+++ .++..|+
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGG
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 45566666665 4555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-22 Score=195.53 Aligned_cols=327 Identities=14% Similarity=0.084 Sum_probs=261.6
Q ss_pred CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHc
Q 044812 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199 (547)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 199 (547)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 45566777777778888888888888777654 446677777777788888888887777765322
Q ss_pred CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh----HHHHhH------------
Q 044812 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK----VSLVSV------------ 263 (547)
Q Consensus 200 ~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----~~~~~l------------ 263 (547)
.+.+...|..++.+|.+.|++++|...|+++ .. ..|+. ..+..+
T Consensus 90 -----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 90 -----------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV-LK--SNPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT--SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--cCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 1345778888999999999999999999998 44 34443 444444
Q ss_pred HHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-C-CCChhhHHHHHHHHHhcCChH
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-F-NKDAITWSSIVSGYGLHGKGH 341 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~ 341 (547)
...+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|...|++.- . +.+..+|..+...|...|+++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445889999999999999999875 5678889999999999999999999998731 1 456788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHH
Q 044812 342 EAVLLYNKMVCLGSKPD-IITIVGV------------LSACGRSGLINEGLEIYNSVINTYRIKPT-----TEICACVVD 403 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~-~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~ 403 (547)
+|...|+++... .|+ ...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..
T Consensus 229 ~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 229 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHH
Confidence 999999999875 444 4444444 78899999999999999999875 343 457888999
Q ss_pred HhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH------------
Q 044812 404 MLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN------------ 469 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~------------ 469 (547)
.+.+.|++++|...++++ ...| +..+|..++.+|...|++++|...++++++..|.++..+..++.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999987 3345 67899999999999999999999999999999999999999884
Q ss_pred HHHcCC-----CHHHHHHHHHHH
Q 044812 470 LYASSR-----RWDAVAELRTMM 487 (547)
Q Consensus 470 ~~~~~g-----~~~~A~~~~~~m 487 (547)
.|...| +.+++.+.++++
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHhCCCccCCHHHHHHHHHHH
Confidence 455555 556677777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-21 Score=193.34 Aligned_cols=422 Identities=10% Similarity=0.047 Sum_probs=324.8
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHH
Q 044812 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130 (547)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 130 (547)
....+..+...+.+.|++++|+..|+.+.+ .+..+|..+..++.+.|++++|++.|+++.+.+. .+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 356778889999999999999999999854 4677899999999999999999999999998652 356788889999
Q ss_pred HccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC------ChhhHHHHHHHHHcCCCch
Q 044812 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR------NVGSWNVRISGHASSGDFS 204 (547)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 204 (547)
+...|++++|...++ .... .|+. ....+..+...+....|...++++... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 3332 2222 222344566667778888888887652 1123344455566666655
Q ss_pred hHHHHHHHHhhcCCCChh---hHHHHHHHHHH--------CCCHHHHHHHHHHchhcCCCCCC--------hHHHHhHHH
Q 044812 205 LVVRSRRVFDQMKRRNVY---AWTAMINGYVQ--------NGDLDEALVLFLEMQLKDRIEPN--------KVSLVSVLP 265 (547)
Q Consensus 205 ~a~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~~p~--------~~~~~~ll~ 265 (547)
. +...+......+.. ....+...+.. .|++++|+.+|+++ .+ ..|+ ..++..+..
T Consensus 178 ~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~-l~--~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 178 L---EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL-LS--ANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp H---HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH-HC----CCCHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HH--HCCCcchhhHHHHHHHHHHHH
Confidence 5 55555554443332 33333333322 25899999999998 44 2333 235777778
Q ss_pred HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHH
Q 044812 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEA 343 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a 343 (547)
.+...|+++.|...++.+.+.. |+...+..+...+...|++++|...|++. .. +.+..+|..+...+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 8899999999999999999875 44788899999999999999999999862 21 44677899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--
Q 044812 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-- 421 (547)
Q Consensus 344 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 421 (547)
...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999998864 2246788899999999999999999999998752 346778899999999999999999999986
Q ss_pred --C----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 422 --P----VEPSPSIWGALVSASVMH----------GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 422 --~----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
+ .......+..+..++... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.++
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1 112233455666777888 999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 044812 486 MMKDRGL 492 (547)
Q Consensus 486 ~m~~~~~ 492 (547)
+..+...
T Consensus 487 ~al~~~~ 493 (537)
T 3fp2_A 487 DSAILAR 493 (537)
T ss_dssp HHHHHC-
T ss_pred HHHHhCC
Confidence 9877553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-19 Score=168.86 Aligned_cols=207 Identities=10% Similarity=0.036 Sum_probs=129.6
Q ss_pred HHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHH
Q 044812 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHE 342 (547)
Q Consensus 265 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~ 342 (547)
..+...|++++|...++.+.+.. +.+..++..+..++...|++++|...+++. .. +.+...+..+...|...|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555555555543 344556666777777777777777777652 11 3345667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHhHhc
Q 044812 343 AVLLYNKMVCLGSKPDIITIV------------GVLSACGRSGLINEGLEIYNSVINTYRIKPTT--EICACVVDMLGRA 408 (547)
Q Consensus 343 a~~~~~~m~~~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 408 (547)
|...+++..+... .+...+. .+...+...|++++|...++++.+...-.+.. ..+..+...+...
T Consensus 207 A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 207 SLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 7777777766421 1222222 22445677777777777777776542111111 2344566777777
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 409 GQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
|++++|...+++. ...| +..+|..+..++...|++++|...|+++++.+|.++..+..+..+...
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 7777777777766 2233 566777777777777777777777777777777777777766666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-18 Score=161.21 Aligned_cols=301 Identities=11% Similarity=0.037 Sum_probs=221.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Q 044812 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~ 234 (547)
+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------------------------------p~~~~~~~~~a~~~~~~ 50 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------------------------------PDNYIAYYRRATVFLAM 50 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------------cccHHHHHHHHHHHHHc
Confidence 34566777778888888888888887754311 22444555556666666
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC--CchhHHHH------------HHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSLCNA------------LID 300 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~ 300 (547)
|++++|+..|+++ ... .+.+...+..+...+...|++++|...++.+.+.... .+...+.. +..
T Consensus 51 ~~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 51 GKSKAALPDLTKV-IAL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp TCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-HHh-CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655 221 1223445555556666666666666666665544310 22333333 367
Q ss_pred HHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+...|++++|...+++. .. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999873 11 4567789999999999999999999999999863 34678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHH------------HHHHHhHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHc
Q 044812 379 LEIYNSVINTYRIKPTTEICA------------CVVDMLGRAGQLDRALDFIKTM-PVEPS-P----SIWGALVSASVMH 440 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~ 440 (547)
...+++..+.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+..++...
T Consensus 208 ~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 99999998652 22333332 2366789999999999999987 33343 2 2355678899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|++++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999988643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-17 Score=165.52 Aligned_cols=378 Identities=10% Similarity=0.007 Sum_probs=285.5
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCchhHHHHhccCCC-CCcchHHHHHHHHHh----cCChhHHHHHHH
Q 044812 40 KQSHSQILSLGHISNPFVSTKLITAYAL----CGQPTQSQLVFNSIQH-KDVYLYNSLINGYVK----NHGHNEALELFS 110 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~A~~~~~ 110 (547)
...++...+.| ++..+..+...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44444444444 67777777777777 7888888888877644 456677777777877 788888888888
Q ss_pred HhhhCCCCCCcchHHHHHHHHcc----CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHhccC
Q 044812 111 NMYYSNVSPDDFTLATISKLSGE----IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK----CGKFSECLNLFDEM 182 (547)
Q Consensus 111 ~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 182 (547)
+..+.| +...+..+...+.. .+++++|..+|+...+.| +...+..|..+|.. .+++++|...|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 887764 55666667777766 678888888888887765 45666677777776 67777777777664
Q ss_pred CCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHH----CCCHHHHHHHHHHchhcCCCCCChH
Q 044812 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ----NGDLDEALVLFLEMQLKDRIEPNKV 258 (547)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~ 258 (547)
.+ ..+...+..+...|.. .+++++|+++|++. .+.+ +..
T Consensus 178 ~~---------------------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-~~~~---~~~ 220 (490)
T 2xm6_A 178 AE---------------------------------QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKS-ATSG---DEL 220 (490)
T ss_dssp HH---------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHH
T ss_pred HH---------------------------------CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH-HHCC---CHH
Confidence 32 1355667777777777 78899999999887 4543 455
Q ss_pred HHHhHHHHhhc----cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCChhhHHHH
Q 044812 259 SLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK----CGSLDCARRVFEDSSFNKDAITWSSI 330 (547)
Q Consensus 259 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l 330 (547)
.+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .+++++|..+|++.--..+...+..+
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~L 297 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYL 297 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666664 778888999888887765 45567777778877 89999999999874324566777888
Q ss_pred HHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 331 VSGYGLH-----GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG---LINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 331 i~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
...|... +++++|..+|++..+.| +...+..+...+...| +.++|.+.|++..+. .+...+..+.
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg 370 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLG 370 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHH
Confidence 8888887 89999999999998875 4456667777776656 789999999998764 3577888888
Q ss_pred HHhHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHH
Q 044812 403 DMLGR----AGQLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPE---NPSNYVSLSNLY 471 (547)
Q Consensus 403 ~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~ 471 (547)
..|.. .+++++|..+|++.....+...+..|...|.. .++.++|...|+++.+.+|. ++.....++.++
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 88888 89999999999987333567788889999988 89999999999999999843 666777776665
Q ss_pred Hc
Q 044812 472 AS 473 (547)
Q Consensus 472 ~~ 473 (547)
..
T Consensus 451 ~~ 452 (490)
T 2xm6_A 451 AK 452 (490)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-18 Score=161.32 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=125.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+...+..+..++...|++++|...|++. .. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 202 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVV 202 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555666666666666666666542 11 2234555566667777777777777777776642 2345666777777
Q ss_pred HhccCcHHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYR-------IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
+...|++++|...++++.+... .+.....+..+...+...|++++|...+++. ...| +...|..+..++..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 7777777777777777665321 1224567777888888888888888888776 2223 55678888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HcCCCHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY-ASSRRWD 478 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 478 (547)
.|++++|.+.++++.+..|.++..+..++.++ ...|+.+
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88888888888888888888888888888887 4555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=162.65 Aligned_cols=348 Identities=9% Similarity=0.049 Sum_probs=130.9
Q ss_pred hcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHH
Q 044812 67 LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146 (547)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 146 (547)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5578999999999986664 8889999999999999999999653 5778999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHH
Q 044812 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226 (547)
Q Consensus 147 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~ 226 (547)
..+. .++..+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++ |...|..+ ..|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yee---A~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDA---AKLLYNNV-----SNFGR 153 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTT---HHHHHHHT-----TCHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHH---HHHHHHHh-----hhHHH
Confidence 7764 44577788899999999999998877753 444455555555555555555 44444443 24555
Q ss_pred HHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044812 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306 (547)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (547)
++.++.+.|++++|.+.++++ .++.+|..++.+|...|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------------------------------------------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------------------------------------------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHc------------------------------------------CCchhHHHHHHHHHHcC
Confidence 555555555555555555444 14556666666666666
Q ss_pred CHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 307 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+++.|......+...| .....++..|.+.|++++|..+++...... +-....|+.|...+++- ++++..+.++...
T Consensus 192 ef~lA~~~~l~L~~~a--d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~ 267 (449)
T 1b89_A 192 EFRLAQMCGLHIVVHA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFW 267 (449)
T ss_dssp CHHHHHHTTTTTTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCH--hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 6666655544433223 223456677777777777777777766542 22344555555444443 2333333333333
Q ss_pred HhcCCCC------chhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 387 NTYRIKP------TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 387 ~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+-+++| +...|..++..|...++++.|....-+-+ |+..--..+.....+..+.+---+...--++..
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--- 342 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--- 342 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC---
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC---
Confidence 3334444 46678888888999999998887665542 222222223333345555443333333333333
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
|..++.|..++...=+.+.+.+++++
T Consensus 343 p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 343 PLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34566666666666666666666654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-18 Score=160.85 Aligned_cols=352 Identities=10% Similarity=0.071 Sum_probs=168.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHH
Q 044812 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105 (547)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 105 (547)
.-.++..+|++++|.++++++ +++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHH
Confidence 345667889999999999988 44569999999999999999999999764 5666899999999999999999
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 185 (547)
+..++..++. .+++.+...++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777764 4567889999999999999999998874 467789999999999999999999999988
Q ss_pred ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHH
Q 044812 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265 (547)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 265 (547)
..|..++.++.+.|+++. |.+.+.+. .++.+|..++.+|+..|+++.|......+ .+.|+ -...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~---AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad--~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQA---AVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI----VVHAD--ELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHH---HHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHH--HHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHH---HHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH----HhCHh--hHHHHHH
Confidence 489999999999999999 66666666 48899999999999999999996665443 13443 3556889
Q ss_pred HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhc-CCCCC------ChhhHHHHHHHHHh
Q 044812 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC--GSLDCARRVFED-SSFNK------DAITWSSIVSGYGL 336 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~-~~~~~------~~~~~~~li~~~~~ 336 (547)
.|.+.|.++++..+++...... +.....|+-|.-+|++- +++.+.++.|.. +.++| +...|..+...|..
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888665 55677888887777764 566777777754 55333 46679999999999
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 337 HGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
.++++.|... |.+. ...-+...|.-++ .+..+.+--.+...-.... . +...+.|+.++...=+...+.
T Consensus 295 ~~e~d~A~~t---m~~h~~~a~~~~~f~~~~---~kv~n~elyYkai~fyl~~---~--p~~l~~ll~~l~~~ld~~r~v 363 (449)
T 1b89_A 295 YEEYDNAIIT---MMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYLEF---K--PLLLNDLLMVLSPRLDHTRAV 363 (449)
T ss_dssp TTCHHHHHHH---HHHSTTTTCCHHHHHHHH---HHCSSTHHHHHHHHHHHHH---C--GGGHHHHHHHHGGGCCHHHHH
T ss_pred hchHHHHHHH---HHhCChhhhhhHHHHHHH---hchhHHHHHHHHHHHHHhc---C--HHHHHHHHHHHHhccCcHHHH
Confidence 9999988764 4443 1122344444444 3333333322222222222 2 334566666666666777777
Q ss_pred HHHHhCC
Q 044812 416 DFIKTMP 422 (547)
Q Consensus 416 ~~~~~~~ 422 (547)
.+|++.+
T Consensus 364 ~~~~~~~ 370 (449)
T 1b89_A 364 NYFSKVK 370 (449)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 7777664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=155.39 Aligned_cols=266 Identities=11% Similarity=0.026 Sum_probs=226.5
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
.+...+..++..+...|++++|+++|+++... .+.+...+..++.++...|++++|...++.+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 45667888899999999999999999998333 23344566677788899999999999999999875 5567788999
Q ss_pred HHHHHhcC-CHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044812 299 IDMYSKCG-SLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375 (547)
Q Consensus 299 ~~~~~~~g-~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 375 (547)
...+...| ++++|...|++ ... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999987 232 3456789999999999999999999999998864 22456677788999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHcCCHH
Q 044812 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-V----------EPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~ 444 (547)
++|...++++.+. .+.+...+..+...+...|++++|...+++.. . ..+..++..+..++...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999864 23467889999999999999999999998761 1 334678999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|...++++.+..|.++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999987643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-16 Score=155.03 Aligned_cols=354 Identities=12% Similarity=0.026 Sum_probs=285.9
Q ss_pred CCcchHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHcc----CCCcHHHHHHHHHHHHhCCCCc
Q 044812 84 KDVYLYNSLINGYVK----NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE----IKDLNVGMLIHGLSIKIGFVVD 155 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 155 (547)
.+..++..+...|.. .+++++|+..|+...+.| +...+..+...+.. .+++++|..+|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677777777777 788889999988888764 56677777777777 788888988888888765 5
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHH
Q 044812 156 VILANSLMSMYVK----CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231 (547)
Q Consensus 156 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~ 231 (547)
...+..|...|.. .+++++|...|++..+. .+...+..+...|
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------------------~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---------------------------------GRDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHH
Confidence 5666777777777 67888888888764321 2455677778888
Q ss_pred HH----CCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc----cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 232 VQ----NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 232 ~~----~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
.. .+++++|+++|++. .+.+ +...+..+...+.. .++.++|...++...+.+ +...+..+...|.
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKA-AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 77 78999999999998 5543 56777778888877 899999999999999876 5667788888888
Q ss_pred h----cCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 044812 304 K----CGSLDCARRVFEDSSFNKDAITWSSIVSGYGL----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS--- 372 (547)
Q Consensus 304 ~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 372 (547)
. .+++++|..+|++.--..+...+..+...|.. .+++++|..+|++..+.| +...+..+...+...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 6 88999999999874324566778888888887 899999999999998865 455667777777766
Q ss_pred --CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 044812 373 --GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG---QLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNS 443 (547)
Q Consensus 373 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 443 (547)
+++++|...|++..+. + +...+..+...|...| ++++|.++|++.....+...+..|...|.. .+++
T Consensus 308 ~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp BCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 8999999999999764 3 4567777888887766 889999999987434678889999999998 8999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHc----CCCHHHHHHHHHHHHhCCC
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYAS----SRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 492 (547)
++|...|+++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 384 ~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 384 QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999998865 57789999999998 8999999999999988774
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-16 Score=155.83 Aligned_cols=417 Identities=9% Similarity=0.032 Sum_probs=275.0
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 044812 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119 (547)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 119 (547)
++..++.. +-+...|..++. +.+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|+++.... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 34444443 345667777777 3667888888888877754 3 44567777777778888888888888877653 5
Q ss_pred CcchHHHHHHHH-ccCCCcHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHhccCC
Q 044812 120 DDFTLATISKLS-GEIKDLNVGML----IHGLSIKI-GFVV-DVILANSLMSMYVK---------CGKFSECLNLFDEMP 183 (547)
Q Consensus 120 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 183 (547)
+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 655555555422 34466665554 56655443 4333 34566666665544 677888888887765
Q ss_pred C-CCh---hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHch-----hcC---
Q 044812 184 Q-RNV---GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ-----LKD--- 251 (547)
Q Consensus 184 ~-~~~---~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-----~~~--- 251 (547)
+ |.. ..|..........| ..+...++. .+.+++..|..++.... .+.
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~-------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGIN-------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHC-------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred hchhhhHHHHHHHHHHHHHhhc-------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4 211 11211111000000 001111111 12345666666665420 111
Q ss_pred CCCCCh--------HHHHhHHHHhhc----cCCc----hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCH
Q 044812 252 RIEPNK--------VSLVSVLPTCSS----LIGL----SGGKQIHGFAIRKELNHDVSLCNALIDMYSK-------CGSL 308 (547)
Q Consensus 252 ~~~p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~ 308 (547)
.++|+. ..|...+..... .++. +.+...|+++.... +.+...|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 134431 334444332222 1232 36677888888764 5577888888888875 6887
Q ss_pred H-------HHHHHHhc-CC-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCcHH
Q 044812 309 D-------CARRVFED-SS-FNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-I-ITIVGVLSACGRSGLIN 376 (547)
Q Consensus 309 ~-------~A~~~~~~-~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~ 376 (547)
+ +|..+|++ +. +.| +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999987 32 345 4678999999999999999999999999984 554 2 47888888888999999
Q ss_pred HHHHHHHHHHHhcCCCC-chhHHHHHHHH-hHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKP-TTEICACVVDM-LGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
+|..+|++..+. .| +...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++
T Consensus 374 ~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 999999999864 33 33333332222 34689999999999976 3334 577999999999999999999999999
Q ss_pred HHhhCCCCCc----hHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 453 LIQLEPENPS----NYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 453 ~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+++..|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998776665 7888888889999999999999988654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=159.70 Aligned_cols=262 Identities=12% Similarity=0.025 Sum_probs=208.9
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...+..+...+.+.|++++|+..|+++ .+. .+.+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 139 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAA-VQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALA 139 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHH-HHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3456777888888888888888888887 442 23456677778888888888888888888888775 45677888888
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCCC-hhhHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SFNKD-AITWSS---------------IVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIIT 361 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~ 361 (547)
.+|...|++++|...+++. ...|+ ...+.. .+..+...|++++|...++++.+..... +..+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 8888888888888888752 11222 222211 2333448899999999999998864221 4788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +..++..+..++..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999998652 346788999999999999999999999987 3334 57799999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPEN-----------PSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.|++++|...++++++..|.+ +.+|..++.+|...|++++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999988776 78899999999999999999998764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-16 Score=161.06 Aligned_cols=381 Identities=11% Similarity=0.091 Sum_probs=293.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC-C-----CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K-----DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 125 (547)
..+|.-....+++|...|.+.+|+++++++.- | +....+.|+.+..+. +..+..+..+..... ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 34566667888999999999999999998852 2 346677788777777 667777776665422 134
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchh
Q 044812 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205 (547)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (547)
-+...+...|.+++|..+|++.. -.....+.+ +-..|++++|.++.++... ..+|..+..++...|++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHH
Confidence 47788889999999999998852 122222333 2378999999999998744 5678899999999999999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHH
Q 044812 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285 (547)
Q Consensus 206 a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 285 (547)
|.+.|.+. .|...|..++.++.+.|++++|++.|... .+.. ++....+.++.+|++.++++....+. +
T Consensus 1124 ---AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mA-rk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 ---AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred ---HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 55555443 67888999999999999999999999877 4433 44333445888999998888644443 1
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044812 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365 (547)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 365 (547)
.++...+..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 445567778999999999999999999875 37999999999999999999999976 356899999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--C
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH--G 441 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--~ 441 (547)
-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..| ....|+.|...+++. +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 99999999999998865532 346677789999999999999999999876 4444 344676676666653 4
Q ss_pred CHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 442 NSEMQDLAYKSLIQLEP-----ENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
+..++.+.|..-....| .+...|..++..|.+.|+++.|..+
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 56666666665555444 5677899999999999999999853
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=162.15 Aligned_cols=262 Identities=9% Similarity=-0.014 Sum_probs=209.8
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..+...+.+.|++++|+..|+++ ... .+.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAA-ILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4556888888899999999999999988 332 23466788888889999999999999999988875 45677888999
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SFNKD-----------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PDIITIVGVL 366 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~ 366 (547)
.+|...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999762 11121 223445678899999999999999999986422 1578899999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
..+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++ ...| +..+|..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998752 346889999999999999999999999987 3345 4779999999999999999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 445 MQDLAYKSLIQLEPE------------NPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+|...++++++..|. +..+|..++.++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998765 367899999999999999998887764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=146.53 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=193.8
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC-chhHHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALIDM 301 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 301 (547)
....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 445567888888888888875532 245666777788888888888888888888888776434 56667778899
Q ss_pred HHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCcHHHH
Q 044812 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI---VGVLSACGRSGLINEG 378 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~g~~~~a 378 (547)
+...|++++|++.+++ ..+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|
T Consensus 111 ~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA 185 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDA 185 (291)
T ss_dssp HHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHH
Confidence 9999999999999998 4577789999999999999999999999999863 553211 2233445566999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEM-QDLAYKSLIQ 455 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 455 (547)
..+|+++.+.. +.+...++.+..++.+.|++++|...|++. ...| +..++..++..+...|+..+ +.++++++++
T Consensus 186 ~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 186 YYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999998763 558889999999999999999999999986 3445 67789999999999999875 6789999999
Q ss_pred hCCCCCchHHHHHHHHHcCCCHHHHHHHH
Q 044812 456 LEPENPSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
.+|+++.+. +...+.+.++++..-|
T Consensus 264 ~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 264 AHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred hCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999987544 4556666666665543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-15 Score=153.44 Aligned_cols=420 Identities=12% Similarity=0.097 Sum_probs=301.3
Q ss_pred cCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHH
Q 044812 17 NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGH--ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94 (547)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 94 (547)
..++.........|...|.+.+|.++++.+.-.+- .-+....+.|+....+. +..+..+..+....-+ ...+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 34455577888888899999999999999984421 13456677777666665 5555665555554322 455777
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 044812 95 GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174 (547)
Q Consensus 95 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 174 (547)
.+...|.+++|..+|++... .....+.++ ...+++++|.++.++. -+..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 88889999999999998631 112223332 2677888888888754 256788899999999999999
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 175 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
|+..|.+. .|...|..++.++.+.|+++++.+.+..-.... ++....+.++.+|.+.+++++...+. -.
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI--------~~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI--------NG 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH--------hC
Confidence 99999664 667778889999999999998544444433333 33333445889999998888543332 13
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 334 (547)
++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|+++.|.+.+++.+ +..+|..+-.+|
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFAC 1260 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 45566777889999999999999999875 378899999999999999999998765 557888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhc--CCH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRA--GQL 411 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~~ 411 (547)
...|++..|...... +..+...+..++..|.+.|.+++|+.+++... +..+ ....|+-+..+|.+. ++.
T Consensus 1261 ve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred hhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHH
Confidence 888988888876654 33356677788889999999999999998776 3343 445666666666654 466
Q ss_pred HHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCCCCchHHHHHHHHH
Q 044812 412 DRALDFIKTM-PVEP------SPSIWGALVSASVMHGNSEMQDLAYKSLIQL------------EPENPSNYVSLSNLYA 472 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~ 472 (547)
.++.++|..- .+.| +...|..++..|.+.|+++.|....-+-... .+.|+..|...+..|.
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH
Confidence 6666666543 3333 4667888999999999999888332222111 3667778887777777
Q ss_pred cCC---------------CHHHHHHHHH
Q 044812 473 SSR---------------RWDAVAELRT 485 (547)
Q Consensus 473 ~~g---------------~~~~A~~~~~ 485 (547)
..+ +.+.+.+++.
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 777 7777777776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-17 Score=156.75 Aligned_cols=297 Identities=11% Similarity=0.043 Sum_probs=151.7
Q ss_pred CChhHHHH-HHHHhhhCCC---CCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 044812 100 HGHNEALE-LFSNMYYSNV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 100 ~~~~~A~~-~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 175 (547)
|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++.. +.+..++..+..++.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 55666666 5554443211 1123445566666666666666666666666553 33555666666677777777777
Q ss_pred HHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC
Q 044812 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255 (547)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p 255 (547)
...|+++.+.+ +.+..++..+...+...|++++|+..++++ ... .|
T Consensus 118 ~~~~~~al~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~~ 163 (368)
T 1fch_A 118 ISALRRCLELK-------------------------------PDNQTALMALAVSFTNESLQRQACEILRDW-LRY--TP 163 (368)
T ss_dssp HHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHT--ST
T ss_pred HHHHHHHHhcC-------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--Cc
Confidence 66666542211 234556677777777777777777777776 332 22
Q ss_pred ChH-HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC---ChhhHHHH
Q 044812 256 NKV-SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK---DAITWSSI 330 (547)
Q Consensus 256 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l 330 (547)
+.. .+..+ +.... ...+ ...+..+...+ ..|++++|...|++. ...| +...+..+
T Consensus 164 ~~~~~~~~~-------~~~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 164 AYAHLVTPA-------EEGAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CcHHHHHHH-------HHHhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 211 11000 00000 0000 00011112222 455555555555441 1112 34555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
...|...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|+
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCC
Confidence 666666666666666666655542 2234555666666666666666666666655431 2245556666666666666
Q ss_pred HHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 411 LDRALDFIKTM-PVEP------------SPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
+++|...|+++ ...| ...+|..+..++...|+.++|..++++.+
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 66666666554 1111 14567777777777777777776666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-16 Score=152.56 Aligned_cols=368 Identities=10% Similarity=-0.005 Sum_probs=186.9
Q ss_pred CCcchHHHHHHHHccCCCcHHHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC------
Q 044812 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKI-----G---FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ------ 184 (547)
Q Consensus 119 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 184 (547)
.....|+.+...+...|++++|++.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777777888888888887776543 1 122356788899999999999999888876431
Q ss_pred -C----ChhhHHHHHHHHHc--CCCchhHHHHHHHHhhcCCCChhhHHHHHHH---HHHCCCHHHHHHHHHHchhcCCCC
Q 044812 185 -R----NVGSWNVRISGHAS--SGDFSLVVRSRRVFDQMKRRNVYAWTAMING---YVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 185 -~----~~~~~~~li~~~~~--~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
+ ...++..+..++.. .+++++|....+-.-.+.+.+...+..+..+ +...++.++|++.+++. .+ +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a-l~--l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA-IR--LN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH-HH--HC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hh--cC
Confidence 1 12233333333333 3345553333222222333344444444433 33455666666666655 22 22
Q ss_pred C-ChHHHHhHHHHh----hccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhH
Q 044812 255 P-NKVSLVSVLPTC----SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITW 327 (547)
Q Consensus 255 p-~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 327 (547)
| +...+..+...+ ...+++++|...++...... +.+..++..+...|...|++++|...+++. ...| +..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3 233333333322 23445666666666666554 344556666666677777777777666651 1123 34455
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 044812 328 SSIVSGYGLH-------------------GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388 (547)
Q Consensus 328 ~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 388 (547)
..+...|... +.++.|...+++..+.. +.+..++..+...+...|++++|.+.|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 5555555321 12344555555555432 123344555666666666666666666666543
Q ss_pred cCCCCch--hHHHHHHH-HhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 389 YRIKPTT--EICACVVD-MLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 389 ~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
...+.. ..+..+.. .+...|++++|+..|++. .+.|+...... ....+.+++++.++.+|.++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHH
Confidence 111111 11222222 223456666666666654 34444332221 12334455666667789999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceE
Q 044812 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501 (547)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 501 (547)
..|+.+|...|++++|++.+++..+.+-..+...+|+
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999988765544444553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-15 Score=148.98 Aligned_cols=418 Identities=9% Similarity=0.011 Sum_probs=282.1
Q ss_pred cccccccCCcc-hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcc
Q 044812 11 ALVTSRNYTSA-TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVY 87 (547)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~ 87 (547)
+...+.+|... ....++.. ...|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++.
T Consensus 3 e~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 33444455333 45666664 66899999999999999874 66788999999999999999999999999865 7777
Q ss_pred hHHHHHHHH-HhcCChhHHHH----HHHHhhhC-CCCCC-cchHHHHHHHHcc---------CCCcHHHHHHHHHHHHhC
Q 044812 88 LYNSLINGY-VKNHGHNEALE----LFSNMYYS-NVSPD-DFTLATISKLSGE---------IKDLNVGMLIHGLSIKIG 151 (547)
Q Consensus 88 ~~~~ll~~~-~~~~~~~~A~~----~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g 151 (547)
.|...+... ...|+++.|.+ +|+..... |..|+ ...|...+..... .|+++.|..+|+..++..
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 777776533 35677777665 77776543 55544 4556666665543 688999999999998731
Q ss_pred CCCchhHHHHHHHHHHh-------------cCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhc--
Q 044812 152 FVVDVILANSLMSMYVK-------------CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-- 216 (547)
Q Consensus 152 ~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~-- 216 (547)
.......|......... .++++.|..+++++. ...+.++..
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~------------------------~~~~~l~~~~~ 216 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE------------------------TVMKGLDRNAP 216 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHH------------------------HHHHHCCSSSC
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHH------------------------HHHHHhccccc
Confidence 11112333332221111 122223322222100 000111110
Q ss_pred -CCCC--------hhhHHHHHHHHHHC----CCH----HHHHHHHHHchhcCCCCCChHHHHhHHHHhhc-------cCC
Q 044812 217 -KRRN--------VYAWTAMINGYVQN----GDL----DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS-------LIG 272 (547)
Q Consensus 217 -~~~~--------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-------~~~ 272 (547)
..|+ ...|...+...... ++. ++|..+|++. ... .+-+...|......+.+ .|+
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a-l~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC-LLV-LGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH-HHH-HTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 0111 23454444333222 232 4777788877 332 23456667777766664 688
Q ss_pred ch-------hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-h-hhHHHHHHHHHhcCChHH
Q 044812 273 LS-------GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-A-ITWSSIVSGYGLHGKGHE 342 (547)
Q Consensus 273 ~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~-~~~~~li~~~~~~~~~~~ 342 (547)
++ .|..+++...+.-.+.+...|..++..+.+.|++++|..+|++ +...|+ . ..|..++..+.+.|++++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 77 8888888887633355678889999999999999999999987 333454 2 478888888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 343 AVLLYNKMVCLGSKPDIITIVGVLSA-CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 343 a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
|..+|++..+.. +.+...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.
T Consensus 375 A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 375 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999998852 2223333332222 335899999999999998763 336788999999999999999999999987
Q ss_pred ----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 422 ----PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 422 ----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
+..|+ ...|...+......|+.+.+..+++++.+..|.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22332 458888888888999999999999999998773
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-16 Score=148.27 Aligned_cols=262 Identities=10% Similarity=-0.040 Sum_probs=213.0
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...+..+...+...|++++|+.+|+++ .+. .+.+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAV-CQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 4456677888888999999999999888 332 23366777888888899999999999999988875 55677888899
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCCC-hhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SFNKD-AITWSSI--------------VS-GYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 362 (547)
..+...|++++|...+++. ...|+ ...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999998762 11232 2233332 22 3778899999999999998864 3367889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH 440 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 440 (547)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +..++..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998652 346788999999999999999999999987 3334 577899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 441 GNSEMQDLAYKSLIQLEPE------------NPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
|++++|.+.++++.+..|. ++..+..++.++.+.|++++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999888 6889999999999999999999998754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=154.91 Aligned_cols=293 Identities=11% Similarity=-0.001 Sum_probs=173.6
Q ss_pred CCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHH
Q 044812 69 GQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145 (547)
Q Consensus 69 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (547)
+....+...+..... .+...|..+...+.+.|++++|+..|+.+.+... .+..++..+..++...|++++|...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344445554444432 3556788999999999999999999999988642 367789999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChh---hHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChh
Q 044812 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG---SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222 (547)
Q Consensus 146 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~ 222 (547)
++++.. +.+..++..+..+|...|++++|...|+++.+.+.. .+..+ .....
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------------------~~~~~ 178 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK------------------------KGSPG 178 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhh------------------------ccchH
Confidence 999875 456888999999999999999999999886542211 00000 01123
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (547)
.+..+...+...|++++|+..|+++.......++..++..+...+...|++++|...++.+.+..
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 243 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------------- 243 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------
Confidence 34455677777888888888887773221111133344444444444444444444444444332
Q ss_pred HhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 303 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
+.+..+|+.+...|...|++++|...|+++.+.. +.+..++..+..++...|++++|...|
T Consensus 244 ------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 244 ------------------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2334455556666666666666666666655541 123555556666666666666666666
Q ss_pred HHHHHhcCC----------CCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 383 NSVINTYRI----------KPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 383 ~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+++.+...- ..+..+|..+..++...|+.+.+....++-
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 655543100 012556777777777777777777766553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=144.49 Aligned_cols=248 Identities=8% Similarity=0.052 Sum_probs=202.9
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCCh--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNK--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (547)
++.....|++..|+..++.. .. ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~-~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRV-KP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHS-CC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhc-cc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 45667889999999999876 33 34443 3556678999999999999986654 2466778889999999999
Q ss_pred CCHHHHHHHHhcC---CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044812 306 GSLDCARRVFEDS---SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 306 g~~~~A~~~~~~~---~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 381 (547)
|+.++|++.++++ +..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999873 2235 455677777999999999999999987 45788899999999999999999999
Q ss_pred HHHHHHhcCCCCchhHH---HHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 382 YNSVINTYRIKPTTEIC---ACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 382 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
|+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999876 3543211 22334445569999999999998 23457789999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCCHHH-HHHHHHHHHhCC
Q 044812 457 EPENPSNYVSLSNLYASSRRWDA-VAELRTMMKDRG 491 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 491 (547)
+|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578999887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=143.79 Aligned_cols=383 Identities=8% Similarity=-0.069 Sum_probs=195.8
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCC-----------CC-CcchHHHHHHHHHhcCChhHHHHHHHHhhhC-----
Q 044812 53 SNPFVSTKLITAYALCGQPTQSQLVFNSIQ-----------HK-DVYLYNSLINGYVKNHGHNEALELFSNMYYS----- 115 (547)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----- 115 (547)
.....||.|...+...|++++|++.|++.. .| ...+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345677888888888888888888776642 12 2456777888888888888888888776542
Q ss_pred C-CCC-CcchHHHHHHHHcc--CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH---HhcCChHHHHHHhccCCC---C
Q 044812 116 N-VSP-DDFTLATISKLSGE--IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY---VKCGKFSECLNLFDEMPQ---R 185 (547)
Q Consensus 116 ~-~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~---~ 185 (547)
+ ..+ ...++.....++.. .+++++|...|++.++.. +-+...+..+..++ ...++.++|++.+++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 011 12344444444433 346778888888777764 22444444444443 334555666666655432 2
Q ss_pred ChhhHHHHHHHHHc----CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-hHHH
Q 044812 186 NVGSWNVRISGHAS----SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-KVSL 260 (547)
Q Consensus 186 ~~~~~~~li~~~~~----~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~ 260 (547)
+...+..+...+.. .|+.+++....+......+.+...+..+...|...|++++|+..+++. .+ ..|+ ..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA-LE--YIPNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH-HH--hCCChHHHH
Confidence 23333333333322 233444332222222333445555566666666666666666666655 22 1222 2333
Q ss_pred HhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhc
Q 044812 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLH 337 (547)
Q Consensus 261 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~ 337 (547)
..+..++...+.. ..... ...........+..+.|...+++ .. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 3333222111000 00000 00000001112335667777765 23 44566788899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDII--TIVGVLS-ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
|++++|...|++..+....|... .+..+.. .....|+.++|+..|++..+. .|+....... ...+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHH
Confidence 99999999999998865443321 2223322 245789999999999988753 4543322222 2233
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 415 LDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 415 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
..++++. ... .+..+|..++.+|...|++++|++.|+++++.+|.+|.+..-++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3344433 222 35678999999999999999999999999999988887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-15 Score=139.64 Aligned_cols=227 Identities=11% Similarity=0.042 Sum_probs=106.6
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCc
Q 044812 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203 (547)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 203 (547)
+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------ 84 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------ 84 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Confidence 3344444444455555555555444432 224444555555555555555555555443211
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-HHHHhH--------------HH-Hh
Q 044812 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-VSLVSV--------------LP-TC 267 (547)
Q Consensus 204 ~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~l--------------l~-~~ 267 (547)
.+.+...+..+...+...|++++|++.++++ ... .|+. ..+..+ .. .+
T Consensus 85 -------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 85 -------------DPKDIAVHAALAVSHTNEHNANAALASLRAW-LLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHT--STTTTTC--------------------CCT
T ss_pred -------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 1124445556666666666666666666665 321 1211 111111 11 24
Q ss_pred hccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHH
Q 044812 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~ 345 (547)
...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++. .. +.+...+..+...+...|++++|..
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555555555443 224444555555555555555555555431 11 2233444555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 346 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 228 ~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 228 AYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555554431 12344444445555555555555555554443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-17 Score=165.67 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=103.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS------SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 363 (547)
.-..+|+++|++||+.|++++|.++|++| ++.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34567888888888888888888888652 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCc-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 044812 364 GVLSACGRSGL-INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 364 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
++|.++++.|+ .++|.++|++|.++ |+.||..+|++++.+..+.+-++.+.++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999888887 47788899999877 8899999998888777665444444333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-17 Score=167.51 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHH
Q 044812 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQ-------HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126 (547)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 126 (547)
-..+||+||++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999997753 58999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----ChhhHHHHHHHHHcC
Q 044812 127 ISKLSGEIKDL-NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-----NVGSWNVRISGHASS 200 (547)
Q Consensus 127 l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 200 (547)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+.-+ ...+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999998888776666666665555431 122334444555544
Q ss_pred C
Q 044812 201 G 201 (547)
Q Consensus 201 g 201 (547)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-15 Score=127.87 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=155.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044812 289 NHDVSLCNALIDMYSKCGSLDCARRVFED-SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366 (547)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 366 (547)
+++...+..+...+.+.|++++|...|++ +... .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 55677788888899999999999999986 2333 456778888999999999999999999998863 22567888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 044812 367 SACGRS-----------GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGAL 433 (547)
Q Consensus 367 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 433 (547)
..+... |++++|+..+++..+. .| +...+..+...+...|++++|+..|++. ....+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999865 34 6788889999999999999999999987 212778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..++...|++++|+..|+++++.+|.++..+..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-15 Score=132.62 Aligned_cols=221 Identities=11% Similarity=0.063 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (547)
...|..+...+...|++++|+..|++. .+.. .+..++..+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a------------------------------------~~~~--~~~~~~~~~~~ 46 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKA------------------------------------WELH--KDITYLNNRAA 46 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------------------HHHS--CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH------------------------------------HHhh--ccHHHHHHHHH
Confidence 345556666666666666666666665 3333 33444555555
Q ss_pred HHHhcCCHHHHHHHHhcC-CC----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 301 MYSKCGSLDCARRVFEDS-SF----NKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
++...|++++|...+++. .. .++ ...|..+...|...|++++|...|++..+. .|+. ..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~ 117 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTK 117 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHH
Confidence 555555555555555431 00 112 356777777778888888888888887774 3443 23455
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|++++|...++.+... .+.+...+..+...+...|++++|...+++. .. +.+..+|..+..++...|++++|+..
T Consensus 118 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888887653 1235667778888888888888888888876 22 23577888889999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
++++++..|.++..+..++.++...|++++|.+.+++..+.
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999988899999999999999999999999887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=131.50 Aligned_cols=239 Identities=7% Similarity=-0.005 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC--CCCChHHHHhHHH
Q 044812 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR--IEPNKVSLVSVLP 265 (547)
Q Consensus 188 ~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~p~~~~~~~ll~ 265 (547)
..|..+...+...|++++|....+-..... .+...|..+..++...|++++|+..+++. .... ..|+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~-------- 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDA-VEQGREMRADY-------- 75 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCCH--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCcccccch--------
Confidence 467788899999999999655555444455 78889999999999999999999999987 3310 00110
Q ss_pred HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHH
Q 044812 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAV 344 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~ 344 (547)
+....++..+..++...|++++|...|++. ...|+. ..+...|++++|.
T Consensus 76 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 76 -----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHH
Confidence 001345666677777777777777777652 223432 3455667788888
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-C
Q 044812 345 LLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-P 422 (547)
Q Consensus 345 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 422 (547)
..++++... .| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. .
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888774 34 45677778888888899999999999887652 336778888888999999999999998876 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHH
Q 044812 423 VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE------PENPSNYVSLSNL 470 (547)
Q Consensus 423 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 470 (547)
..| +...|..+..++...|++++|...++++.+.. |.+...+..+..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 334 57788899999999999999999999999887 7776666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-15 Score=143.30 Aligned_cols=373 Identities=10% Similarity=0.003 Sum_probs=213.3
Q ss_pred HHHHHHhcCCchhHHHHhccCCC-CCcchHHHHHHHHHhcCCh---hHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC-
Q 044812 61 LITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGYVKNHGH---NEALELFSNMYYSNVSPDDFTLATISKLSGEIK- 135 (547)
Q Consensus 61 l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 135 (547)
+...+.+.|++++|.+.|+...+ .+..++..|...+...|++ ++|...|+...+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 44555666777777777766543 3444555555555556666 6666666666543 3344444444333332
Q ss_pred ----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHH
Q 044812 136 ----DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211 (547)
Q Consensus 136 ----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~ 211 (547)
++++|..+|++..+.|. ...+..|...|...+..+.+ ..+.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~-------------------------------~~a~~ 130 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPN-------------------------------VNAQQ 130 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTT-------------------------------CCHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCC-------------------------------HHHHH
Confidence 55666666666666552 22444555555544433222 11222
Q ss_pred HHhhcC-CCChhhHHHHHHHHHHCCCHHHHH----HHHHHchhcCCCCCChHHHHhHHHHhhccC---CchhHHHHHHHH
Q 044812 212 VFDQMK-RRNVYAWTAMINGYVQNGDLDEAL----VLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GLSGGKQIHGFA 283 (547)
Q Consensus 212 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~----~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~ 283 (547)
.+.... ..+...+..+...|...+.++++. .+++.. ...+...+..+...+...| +.++|...|+..
T Consensus 131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-----~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA-----LNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-----TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 222221 123445556666666666443333 333333 1222236666666666677 777777777777
Q ss_pred HHcCCCCchhHHHHHHHHHHhc----CCHHHHHHHHhcCCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCC
Q 044812 284 IRKELNHDVSLCNALIDMYSKC----GSLDCARRVFEDSSFNKDAITWSSIVSG-Y--GLHGKGHEAVLLYNKMVCLGSK 356 (547)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~ 356 (547)
.+.| +++...+..+..+|... +++++|..+|++.. +.+...+..+... | ...+++++|..+|++..+.|
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 7776 44455445677777554 68888998888766 5666777777776 4 46788999999999988876
Q ss_pred CCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhCCCCCCH
Q 044812 357 PDIITIVGVLSACGRSG-----LINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLDRALDFIKTMPVEPSP 427 (547)
Q Consensus 357 p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~ 427 (547)
+...+..|...|. .| ++++|...|++.. .-+...+..|...|.. ..++++|..+|++.....+.
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 5566666666665 44 8899999988775 2356666677777665 34899999999887333345
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH--HcCCCHHHHHHHHHHHHh
Q 044812 428 SIWGALVSASVM----HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY--ASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 428 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 489 (547)
.....|...|.. ..+..+|...|+++.+.+++. ....+..+. ...++.++|.++.++...
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 556667776663 458999999999998877544 333333333 334567778888777654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=130.89 Aligned_cols=243 Identities=10% Similarity=-0.078 Sum_probs=189.6
Q ss_pred HHCCCHHHHHHHHHHchhcCCC-C--CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 232 VQNGDLDEALVLFLEMQLKDRI-E--PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 232 ~~~~~~~~A~~~~~~m~~~~~~-~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
...|++++|+..|+++ .+... . .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQI-LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3457889999999988 44321 1 135678888888999999999999999988875 45678899999999999999
Q ss_pred HHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 309 DCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 309 ~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
++|...|++. .. +.+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999862 21 446778999999999999999999999999885 4554445555556677799999999998887
Q ss_pred HhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
... +++...+ .++..+...++.++|...+++. ...|. ..++..+..++...|++++|...++++++.+|.+
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 652 3444444 4677778888899999999886 33332 5688899999999999999999999999999877
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHH
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
.. ..+.++...|++++|++.+
T Consensus 249 ~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CH---HHHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHhhHHHH
Confidence 44 3467788889999988776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-13 Score=132.09 Aligned_cols=312 Identities=11% Similarity=0.001 Sum_probs=163.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCc---hhHHHHhccCCCCCcchHHHHHHHHHhcC
Q 044812 24 QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP---TQSQLVFNSIQHKDVYLYNSLINGYVKNH 100 (547)
Q Consensus 24 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 100 (547)
..+...+...|++++|.+.++...+.| ++..+..|...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 446778888999999999999999987 444555667777778888 99999999987777778888887666655
Q ss_pred -----ChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 101 -----GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN---VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 101 -----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
++++|+..|+...+.|. ...+..|...|...+..+ .+.+.+......| +......|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999998763 346777777776655433 4455555555544 455667778888887744
Q ss_pred ----HHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhc---CCCChhhHHHHHHHHHHC----CCHHHHH
Q 044812 173 ----SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM---KRRNVYAWTAMINGYVQN----GDLDEAL 241 (547)
Q Consensus 173 ----~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~---~~~~~~~~~~li~~~~~~----~~~~~A~ 241 (547)
+.+..+++.....+...+..+...|...|......+|.+.|+.. ..++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 44444555555555545555555555555322223344444333 223333334444444333 4555666
Q ss_pred HHHHHchhcCCCCCChHHHHhHHHH-h--hccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-----CHHHHHH
Q 044812 242 VLFLEMQLKDRIEPNKVSLVSVLPT-C--SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-----SLDCARR 313 (547)
Q Consensus 242 ~~~~~m~~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~ 313 (547)
++|++. . +-+...+..+... + ...+++++|...|++..+.| +...+..|..+|. .| ++++|..
T Consensus 238 ~~~~~a-a----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKI-A----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHH-G----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHH-c----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 666555 2 1222333333333 2 33555555555555555544 3344444444444 33 5555555
Q ss_pred HHhcCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 044812 314 VFEDSSFNKDAITWSSIVSGYGL----HGKGHEAVLLYNKMVCLG 354 (547)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 354 (547)
.|++.- ..+...+..|...|.. ..++++|..+|++..+.|
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 555544 4444444444444443 225555555555555444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-14 Score=127.17 Aligned_cols=248 Identities=10% Similarity=-0.034 Sum_probs=154.6
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc--hhHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD--VSLCNALID 300 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 300 (547)
.+......+...|++++|+..|++. .+. .+.+...+..+..++...|++++|...++.+.+.+..++ ...|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~-l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKL-EAK-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-HHT-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-HHh-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566666777777777777766 332 112333566666666677777777777776666321111 223666777
Q ss_pred HHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
++...|++++|...|++. .. +.+...|..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777652 11 3345567777777777777777777777776641 22455555555233334577777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCCHHH
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQ---LDRALDFIKTM----PVEPS------PSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~~~~~ 445 (547)
...|+++.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...|...|++++
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776542 2235566666666666666 55566666554 11233 2467788888999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
|.+.++++++.+|.++.++..+.......+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999888887777665544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=117.88 Aligned_cols=169 Identities=8% Similarity=-0.032 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSA 368 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 368 (547)
...+..+..+|...|++++|.+.+++. .. +.+...+..+...|...|++++|..+++++.+.+..| +...+..+...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 334444555555555555555555431 11 2234445555555555666666666665555422233 23445555555
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a 446 (547)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...|+.++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 556666666666666555431 223445555555555555555555555554 222 2344555555555556666666
Q ss_pred HHHHHHHHhhCCCCCc
Q 044812 447 DLAYKSLIQLEPENPS 462 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~ 462 (547)
.+.++++.+..|.++.
T Consensus 229 ~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 229 ASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHCCCCHH
Confidence 6666666655555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=119.45 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=133.7
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+..++..+...+...|++++|+..|++. .+ +.+.. .+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~---~~~~~-----------------------------------a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKA-CD---LKENS-----------------------------------GCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH---TTCHH-----------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHH-HH---CCCHH-----------------------------------HHHHHH
Confidence 4556666667777777777777777666 33 11223 334444
Q ss_pred HHHHh----cCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 300 DMYSK----CGSLDCARRVFEDSSFNKDAITWSSIVSGYGL----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 300 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
..|.. .|++++|...|++.--..+...+..+...|.. .+++++|...|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 44444 55555555555442101244455555555555 666666666666665543 44555555555555
Q ss_pred ----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 044812 372 ----SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLDRALDFIKTMPVEPSPSIWGALVSASVM---- 439 (547)
Q Consensus 372 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 439 (547)
.+++++|...|++..+. + +...+..+...|.. .+++++|...|++.....+...+..+...|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 66666666666666543 2 34455555555655 66666666666655212345566666777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS----SRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 491 (547)
.+++++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777777777777777655 4567777777777 777777777777776655
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-13 Score=116.14 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=148.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+...+..+...+...|++++|...|++. .. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456667777777778888888777652 11 3446677777788888888888888888877753 3356677777888
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 369 CGRS-GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 369 ~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
+... |++++|...++++.+. +..| +...+..+...+...|++++|...++++ ...| +...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 8888888888887762 2333 3567777888888888888888888776 2233 4667888888888888888
Q ss_pred HHHHHHHHHHhhCC-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 445 MQDLAYKSLIQLEP-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 445 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|...++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 88888888888888888888888888887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=122.55 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.+..+...+...|++++|...+++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3333444444444444444444331 00 2233344444444555555555555555544432 1233444444445555
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++ ... .+..++..+..++...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 555555555555544321 123444444444555555555555555443 111 2334455555555555555555555
Q ss_pred HHHHHhhCCCCCchHHHHH
Q 044812 450 YKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~ 468 (547)
++++.+..|.++..+..+.
T Consensus 216 ~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHccCcchHHHHHHHH
Confidence 5555555555544444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.6e-13 Score=119.76 Aligned_cols=198 Identities=10% Similarity=-0.007 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 369 (547)
...+..+...+...|++++|...|++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 456778888888999999999988762 11 4467789999999999999999999999998863 33678888999999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 446 (547)
...|++++|.+.++++.+. +..| +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999762 3445 5678888999999999999999999987 2234 577899999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=118.38 Aligned_cols=226 Identities=13% Similarity=0.029 Sum_probs=155.2
Q ss_pred ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC-CCChhhHHHHHHHHHH----CCCHHHHHHHHHHchhcCCCCCChHHH
Q 044812 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-RRNVYAWTAMINGYVQ----NGDLDEALVLFLEMQLKDRIEPNKVSL 260 (547)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~~~ 260 (547)
+...+..+...+...|++++ |.+.|++.. ..+..++..+...|.. .+++++|+..|++. .+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~---A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQ---AKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA-CDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH-HHCC---CHHHH
Confidence 45577788889999999999 555555543 3466788889999999 99999999999988 4432 33344
Q ss_pred HhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 044812 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK----CGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336 (547)
Q Consensus 261 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 336 (547)
.. +...|.. .+++++|...|++.--..+...+..+...|..
T Consensus 78 ~~-----------------------------------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 78 HL-----------------------------------LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 122 (273)
T ss_dssp HH-----------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH-----------------------------------HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHc
Confidence 44 4444444 55555555555442101244555666666666
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh-
Q 044812 337 ----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR----SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR- 407 (547)
Q Consensus 337 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 407 (547)
.+++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+...|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcC
Confidence 677777777777777654 44555666666665 77788888888777654 2 45566677777777
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC
Q 044812 408 ---AGQLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 408 ---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+++++|...+++.....+...+..+...|.. .+++++|.+.++++.+.+|++
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 78888888888776212236677778888888 889999999999998888754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-12 Score=112.90 Aligned_cols=209 Identities=12% Similarity=0.015 Sum_probs=149.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..+...+...|++++|++.|+++ .+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------------------------------~~~~-~~~~~~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDA------------------------------------LKSD-PKNELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------------------HHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------------------------HHhC-ccchHHHHHHH
Confidence 4455666666666666666666666665 2222 22344566666
Q ss_pred HHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLH-GKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLI 375 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 375 (547)
.++...|++++|...+++. .. +.+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 6677777777777777652 11 34556777788888888 888888888888877333343 56777788888888899
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE--PSPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
++|...++++.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...|+.+.+..+++.
T Consensus 130 ~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 99988888887642 335777888888888999999999988876 222 4566777778888899999999999999
Q ss_pred HHhhCCCCCchHHHH
Q 044812 453 LIQLEPENPSNYVSL 467 (547)
Q Consensus 453 ~~~~~~~~~~~~~~l 467 (547)
+.+..|.++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 998999887665443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-13 Score=120.63 Aligned_cols=199 Identities=12% Similarity=0.126 Sum_probs=156.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
.....+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34566777888899999999999999873 22 3467788889999999999999999999998863 336788889999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 445 (547)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998752 346788889999999999999999999987 22 3467789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|+..++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-12 Score=114.99 Aligned_cols=195 Identities=16% Similarity=0.074 Sum_probs=105.2
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
++...+..+...+.+.|++++|+..|++. .+. -+.+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERA-LKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 35566777778888888888888888877 332 22344556666666666777777777776666654 3345556666
Q ss_pred HHHHHhc-----------CCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044812 299 IDMYSKC-----------GSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365 (547)
Q Consensus 299 ~~~~~~~-----------g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 365 (547)
..++... |++++|+..|++. ...| +...|..+...|...|++++|...|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 5555555555541 1122 34445555555555555555555555555544 445555555
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 420 (547)
..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555555431 22344455555555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=8.5e-13 Score=125.11 Aligned_cols=246 Identities=9% Similarity=-0.016 Sum_probs=193.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCC-chhHHHHHHHHHHcCCCCchhHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
+...|..+...+.+.|++++|+..|++. .. +.| +...|..+..++...|+ +++|...++++.+.. +-+...|..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~a-l~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDA-IE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHH-HH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 4467788888888999999999999888 44 344 45667788888888886 899999988888876 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCc
Q 044812 298 LIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR-SGL 374 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~ 374 (547)
+..++...|++++|+..|++. .+ ..+...|..+..++...|++++|+..++++++... -+...|+.+..++.. .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 888999999999999998862 22 45677888899999999999999999999988632 257788888888887 565
Q ss_pred HHHH-----HHHHHHHHHhcCCCC-chhHHHHHHHHhHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC----
Q 044812 375 INEG-----LEIYNSVINTYRIKP-TTEICACVVDMLGRAG--QLDRALDFIKTMPVEP-SPSIWGALVSASVMHG---- 441 (547)
Q Consensus 375 ~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~---- 441 (547)
.++| +..+++.++. .| +...|..+...+...| ++++|.+.+.++...| +...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5666 4778887764 44 6778888888888888 6889998888774445 4568888888888764
Q ss_pred -----CHHHHHHHHHHH-HhhCCCCCchHHHHHHHHHc
Q 044812 442 -----NSEMQDLAYKSL-IQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 442 -----~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 473 (547)
..++|+++++++ .+.+|.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 88999888888888777654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-13 Score=128.51 Aligned_cols=298 Identities=15% Similarity=0.117 Sum_probs=192.6
Q ss_pred chHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHH
Q 044812 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD----VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197 (547)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 197 (547)
..+......+...|++++|...++.+++.+.. + ..++..+..+|...|++++|...+++
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------- 72 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHH---------------- 72 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------
Confidence 34455566667777777777777777766422 2 34677788888888888888888876
Q ss_pred HcCCCchhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchh
Q 044812 198 ASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275 (547)
Q Consensus 198 ~~~g~~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 275 (547)
+.++......+ ...++..+...+...|++++|+..+++......-.++..
T Consensus 73 -----------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------- 124 (406)
T 3sf4_A 73 -----------DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV----------------- 124 (406)
T ss_dssp -----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-----------------
T ss_pred -----------HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-----------------
Confidence 33333333221 345678888899999999999999887721110001100
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHhc-------CCCCC-ChhhH
Q 044812 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGS--------------------LDCARRVFED-------SSFNK-DAITW 327 (547)
Q Consensus 276 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~-------~~~~~-~~~~~ 327 (547)
....++..+...|...|+ +++|...+++ .+..+ ....+
T Consensus 125 --------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 190 (406)
T 3sf4_A 125 --------------GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF 190 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 012234444444444454 5555544432 22111 12356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHH
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPD----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEIC 398 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 398 (547)
..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++
T Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 270 (406)
T 3sf4_A 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270 (406)
T ss_dssp HHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHH
Confidence 7777778888888888888877764310 111 236777778888888888888888877643211111 4567
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCCchH
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLE------PENPSNY 464 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~ 464 (547)
..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...++++.+.. +....++
T Consensus 271 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 350 (406)
T 3sf4_A 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTAR 350 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence 78888889999999998888776 11122 4578888999999999999999999998763 2234567
Q ss_pred HHHHHHHHcCCCHH
Q 044812 465 VSLSNLYASSRRWD 478 (547)
Q Consensus 465 ~~l~~~~~~~g~~~ 478 (547)
..++.++...|+..
T Consensus 351 ~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 351 LNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhHhH
Confidence 78888888877653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=132.99 Aligned_cols=265 Identities=12% Similarity=0.016 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-----HHHHhHHHHhhccCCchhHHHHHHHHHHc----C-CCCc
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-----VSLVSVLPTCSSLIGLSGGKQIHGFAIRK----E-LNHD 291 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 291 (547)
..+..+...+...|++++|+..|+++ ... .|+. ..+..+...+...|+++.|...+++..+. + .+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~a-l~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAA-IQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH-HHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34556677888999999999999888 442 3332 46777888888999999999988887754 1 1224
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCC-ChhhHHHHHHHHHhcCC-----------------hHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-------SFNK-DAITWSSIVSGYGLHGK-----------------GHEAVLL 346 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~-----------------~~~a~~~ 346 (547)
..++..+...|...|++++|...+++. +-.+ ....+..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567788899999999999999988752 2011 23467888889999999 9999998
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHHHHHHH
Q 044812 347 YNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 347 ~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
+++..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8886542 2122 2357778888899999999999999988764211112 23778889999999999999999
Q ss_pred HHhC-C---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHcCCCHHHHHHH
Q 044812 418 IKTM-P---VEP----SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 418 ~~~~-~---~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
+++. . ... ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9876 1 111 24578889999999999999999999998874322 34788999999999999999999
Q ss_pred HHHHHh
Q 044812 484 RTMMKD 489 (547)
Q Consensus 484 ~~~m~~ 489 (547)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=118.32 Aligned_cols=229 Identities=10% Similarity=-0.031 Sum_probs=185.9
Q ss_pred HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCCh----hhHHHHHH
Q 044812 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDA----ITWSSIVS 332 (547)
Q Consensus 258 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~li~ 332 (547)
..+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++. ...++. ..|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999875 445668888999999999999999999862 212222 24888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCH
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQL 411 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 411 (547)
.|...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863 235678999999999999999999999988753 44 667777777344445699
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC---CCC-----CchHHHHHHHHHcCCCHH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGN---SEMQDLAYKSLIQLE---PEN-----PSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~ 478 (547)
++|...|+++ ...| +...+..+..++...|+ .++|...++++.+.. |+. ..+|..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987 3344 46788888899998888 888999999998874 432 257888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 044812 479 AVAELRTMMKDRG 491 (547)
Q Consensus 479 ~A~~~~~~m~~~~ 491 (547)
+|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-13 Score=129.00 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=205.5
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-----hHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-----KVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN 289 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 289 (547)
.....+......+...|++++|+..|++. ... .|+ ...+..+...+...|+++.|...++.+.+. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~a-l~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAA-VQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH-Hhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 34556677788899999999999999988 442 333 246778888889999999999998887643 211
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC---CCC----hhhHHHHHHHHHhcCC--------------------h
Q 044812 290 H-DVSLCNALIDMYSKCGSLDCARRVFEDS-SF---NKD----AITWSSIVSGYGLHGK--------------------G 340 (547)
Q Consensus 290 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~----~~~~~~li~~~~~~~~--------------------~ 340 (547)
| ...++..+...|...|++++|...+++. .+ .++ ..++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2 2457788899999999999999988752 10 122 3468888899999999 9
Q ss_pred HHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCH
Q 044812 341 HEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQL 411 (547)
Q Consensus 341 ~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 411 (547)
++|...+.+..+. +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998887543 2122 2356788888899999999999999988754211122 34788889999999999
Q ss_pred HHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHcCCCH
Q 044812 412 DRALDFIKTM----PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYVSLSNLYASSRRW 477 (547)
Q Consensus 412 ~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~ 477 (547)
++|...+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999876 11122 4578889999999999999999999998874332 55788999999999999
Q ss_pred HHHHHHHHHHHh
Q 044812 478 DAVAELRTMMKD 489 (547)
Q Consensus 478 ~~A~~~~~~m~~ 489 (547)
++|.+.+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-12 Score=108.73 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=140.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 401 (547)
.++..|..+...|...|++++|...|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 356678888899999999999999999988853 2257788888888999999999999999887642 3356677778
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
...+...++++.|...+.+. ...| +...+..+..++...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888999999999998876 2334 567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 044812 480 VAELRTMMKDRG 491 (547)
Q Consensus 480 A~~~~~~m~~~~ 491 (547)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999987653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-13 Score=124.10 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-----hHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC-Cch
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-----KVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN-HDV 292 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 292 (547)
.+......+...|++++|+..|+++ ... .|+ ...+..+...+...|+++.|...++...+. +.. ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~a-l~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAA-VQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH-Hhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455667788888999999998887 442 233 356777788888888888888888876543 211 235
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFEDS----SFNKD----AITWSSIVSGYGLHGK--------------------GHEAV 344 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~li~~~~~~~~--------------------~~~a~ 344 (547)
.++..+...|...|++++|...+++. ...++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56788888999999999999988752 10122 3367788888999999 89999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHhHhcCCHHHHH
Q 044812 345 LLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 345 ~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
..+++.... +..| ....+..+...+...|++++|...+++..+...-.+ ....+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888876542 2122 234677888889999999999999998765421111 2347788889999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHcCCCHHHHH
Q 044812 416 DFIKTM----PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYVSLSNLYASSRRWDAVA 481 (547)
Q Consensus 416 ~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~ 481 (547)
..+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999876 11122 4578888999999999999999999998864322 347889999999999999999
Q ss_pred HHHHHHHhC
Q 044812 482 ELRTMMKDR 490 (547)
Q Consensus 482 ~~~~~m~~~ 490 (547)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=123.20 Aligned_cols=229 Identities=11% Similarity=0.042 Sum_probs=192.9
Q ss_pred hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcC-CC-CCChhhHHHHHHH
Q 044812 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS-LDCARRVFEDS-SF-NKDAITWSSIVSG 333 (547)
Q Consensus 257 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~-~~-~~~~~~~~~li~~ 333 (547)
...|..+...+.+.|++++|...++.+++.. +-+..+|+.+..++...|+ +++|+..|++. .+ +.+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777888899999999999999999886 5577889999999999997 99999999872 22 4467789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh-cCCHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR-AGQLD 412 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 412 (547)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999863 2267889999999999999999999999998752 3378889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC--------
Q 044812 413 RA-----LDFIKTM-PVEP-SPSIWGALVSASVMHG--NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR-------- 475 (547)
Q Consensus 413 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 475 (547)
+| +..+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777765 3445 5678999999999888 689999999998 888999999999999999874
Q ss_pred -CHHHHHHHHHHH-HhC
Q 044812 476 -RWDAVAELRTMM-KDR 490 (547)
Q Consensus 476 -~~~~A~~~~~~m-~~~ 490 (547)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-13 Score=131.74 Aligned_cols=192 Identities=8% Similarity=0.009 Sum_probs=151.8
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSL-DCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
+...+..+...|...|++ ++|++.|++. .. +.+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455566666666666666 6666666551 11 334567777888888888888888888888774 466677778888
Q ss_pred HHhcc---------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc--------CCHHHHHHHHHhC-CCCC----
Q 044812 368 ACGRS---------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA--------GQLDRALDFIKTM-PVEP---- 425 (547)
Q Consensus 368 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 425 (547)
.+... |++++|...|++..+.. +.+...|..+..+|... |++++|...|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 88888888888887652 33577888888888888 8899999999887 3345
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+...|..+..+|...|++++|++.|+++++.+|.++..+..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6779999999999999999999999999999999999999999999999999999976544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=118.18 Aligned_cols=220 Identities=10% Similarity=-0.009 Sum_probs=178.0
Q ss_pred hhccCCchhHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChH
Q 044812 267 CSSLIGLSGGKQIHGFAIRKEL---NHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGH 341 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~ 341 (547)
....|++++|...++.+.+... +.+..++..+...+...|++++|...|++. .. +.+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4556889999999999998642 224678889999999999999999999872 22 446788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+|...|+++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999863 235788999999999999999999999999865 454444444555567789999999999765
Q ss_pred -C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 422 -P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP----ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 422 -~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
. ..++...+ .++..+...++.++|...++++.+..| .++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 22343344 367777888899999999999887655 336789999999999999999999999998754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=124.72 Aligned_cols=274 Identities=14% Similarity=0.104 Sum_probs=171.3
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcC
Q 044812 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV----ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200 (547)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 200 (547)
..+...+...|++++|...++.+++.+.. +. ..+..+..+|...|++++|...+++
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~------------------- 111 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH------------------- 111 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------
Confidence 33455566667777777777777665422 22 4677778888888888888888876
Q ss_pred CCchhHHHHHHHHhhcCC--CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC-CCCCChHHHHhHHHHhhccCCchhHH
Q 044812 201 GDFSLVVRSRRVFDQMKR--RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGLSGGK 277 (547)
Q Consensus 201 g~~~~a~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 277 (547)
+.++...... .....+..+...|...|++++|+..+++. ... .-..+.
T Consensus 112 --------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~-------------------- 162 (411)
T 4a1s_A 112 --------DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH-LTLARQLGDR-------------------- 162 (411)
T ss_dssp --------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCH--------------------
T ss_pred --------HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHhhch--------------------
Confidence 3333333322 23456788888889999999999988876 221 000000
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhc-------CCCCC-ChhhHHHHHH
Q 044812 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGS-----------------LDCARRVFED-------SSFNK-DAITWSSIVS 332 (547)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~-------~~~~~-~~~~~~~li~ 332 (547)
+....++..+...|...|+ +++|...+++ .+..+ ....+..+..
T Consensus 163 -----------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 163 -----------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN 231 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012233444444444444 5555444433 12011 1235666677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC----CchhHHHHHHH
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSK-PD----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIK----PTTEICACVVD 403 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~ 403 (547)
.|...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+...-. ....++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776543110 11 2366777777888888888888887765532111 12466777888
Q ss_pred HhHhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 404 MLGRAGQLDRALDFIKTMP-------VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.|...|++++|...+++.. ..+ ...++..+..+|...|++++|...++++.+..+
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8888888888888887761 111 134777888889999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-12 Score=117.33 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=154.8
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 044812 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVD----VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202 (547)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 202 (547)
....+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------- 69 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD-------------------- 69 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence 344555666666666666666665321 2 345667777777888888888777663
Q ss_pred chhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC----hHHHHhHHHHhhccCC----
Q 044812 203 FSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN----KVSLVSVLPTCSSLIG---- 272 (547)
Q Consensus 203 ~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~---- 272 (547)
.++......+ ....+..+...+...|++++|...+++......-.++ ..++..+...+...|+
T Consensus 70 -------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 70 -------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp -------HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred -------HHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 2222222211 3456777788888888888888888776211111111 1233344444444444
Q ss_pred ----------------chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-ChhhHHHHHHHHH
Q 044812 273 ----------------LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK-DAITWSSIVSGYG 335 (547)
Q Consensus 273 ----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~ 335 (547)
++.|...++...+ +....+..+ ....+..+...+.
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~----------------------------~~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHH----------------------------HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhcCCHHHHHHHHHHHHHHHH
Confidence 3333333322221 111111011 1224555556666
Q ss_pred hcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHhH
Q 044812 336 LHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTEICACVVDMLG 406 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ 406 (547)
..|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.. ...++..+...+.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 666666666666655432 1111 123556666667777777777777776554311111 1456667777777
Q ss_pred hcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 407 RAGQLDRALDFIKTM-P---VEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
..|++++|...+++. . ..++ ..++..+...+...|++++|...++++.+..+
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 788888887777765 1 0111 34677788888888999999999988887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-12 Score=119.64 Aligned_cols=238 Identities=8% Similarity=-0.008 Sum_probs=147.7
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHH
Q 044812 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDE 239 (547)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~ 239 (547)
....+...|++++|...|++..+ ++...+.+ ...+|..+...|...|++++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~---------------------------~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~ 161 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAES---------------------------KLIFVKDRIEKAEFFFKMSESYYYMKQTYF 161 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT---------------------------TGGGCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH---------------------------HHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55566777888888887776432 22222211 34567788888888888888
Q ss_pred HHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-
Q 044812 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS- 318 (547)
Q Consensus 240 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 318 (547)
|+..+++...-..-.++. .+....+++.+..+|...|++++|...|++.
T Consensus 162 A~~~~~~al~~~~~~~~~------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHEAY------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHTCSTT------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccc------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888887762110000100 0011235566677777777777777776541
Q ss_pred CC---CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 319 SF---NKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 319 ~~---~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
.+ .++ ..++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 111 135777778888888888888888877662 2223 35667777888888888888888888765
Q ss_pred HhcC---CCCchhHHHHHHHHhHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 387 NTYR---IKPTTEICACVVDMLGRAGQ---LDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 387 ~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+... -+.....+..+...+...|+ +++|+.++++.+..|+. ..+..+...|...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 292 AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4311 11112234556677777777 77777777777544433 35666777777777777777777777664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-12 Score=120.96 Aligned_cols=225 Identities=8% Similarity=-0.002 Sum_probs=162.2
Q ss_pred HHHhhccCCchhHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCC-----hhhHHH
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRK----ELNH-DVSLCNALIDMYSKCGSLDCARRVFEDS----SFNKD-----AITWSS 329 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~ 329 (547)
...+...|++++|...++...+. +.++ ...++..+..+|...|+++.|...+++. .-.++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34445556666666666665542 1111 2456777888888889888888887651 10121 346888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CC-CCchhHHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTY---RI-KPTTEICAC 400 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~ 400 (547)
+...|...|++++|...+++..+. +-.+ ...++..+..++...|++++|.+.+++..+.. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 899999999999999999988754 1111 12478889999999999999999999887621 22 234677889
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-C-----CCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-P-----VEPS-PSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
+...|.+.|++++|...+++. . ..|. ...+..+...+...|+ .++|+..+++. ...|.....+..++.+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 999999999999999999876 1 1222 2245677888888898 77777777765 2224445678899999
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 044812 471 YASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~ 489 (547)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998854
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-11 Score=103.27 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=139.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+..+|..+...|...|++++|+..|++ +.. +.+...+..+...|...|++++|...+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788899999999999999999986 222 3456778889999999999999999999988763 2356677777888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 446 (547)
+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++. ...| +..+|..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 889999999999999987652 346778888999999999999999999987 3344 567899999999999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 044812 447 DLAYKSLIQLEPENP 461 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~ 461 (547)
++.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-09 Score=108.24 Aligned_cols=416 Identities=8% Similarity=0.020 Sum_probs=274.6
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCC---hhHHHHHH
Q 044812 36 LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHG---HNEALELF 109 (547)
Q Consensus 36 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~---~~~A~~~~ 109 (547)
..+....+++.+... +-|...|..++..+.+.+.++.+..+|+.+.. | ....|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455667777776 56899999999999999999999999998864 3 45577778888888888 99999999
Q ss_pred HHhhhCC-CCCCcchHHHHHHHHccCCCc--------HHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHH---------h
Q 044812 110 SNMYYSN-VSPDDFTLATISKLSGEIKDL--------NVGMLIHGLSIK-IGF-VVD-VILANSLMSMYV---------K 168 (547)
Q Consensus 110 ~~m~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~---------~ 168 (547)
+...... ..|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988753 136777777766655554443 334577776654 355 443 457777766543 2
Q ss_pred cCChHHHHHHhccCCC-C--Ch-hhH---HHHHHHHHc----------CCCchhHHHHHHHHhh-------cCC------
Q 044812 169 CGKFSECLNLFDEMPQ-R--NV-GSW---NVRISGHAS----------SGDFSLVVRSRRVFDQ-------MKR------ 218 (547)
Q Consensus 169 ~g~~~~A~~~~~~~~~-~--~~-~~~---~~li~~~~~----------~g~~~~a~~a~~~~~~-------~~~------ 218 (547)
.++++.+..+|++... | +. ..| ..+...+.. ..+++. |...+.+ +..
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~---Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMN---ARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHH---HHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHH---HHHHHHHHHHHHHhHhhcccccc
Confidence 3456778888888765 2 11 122 222222100 001111 2222221 110
Q ss_pred --------C--C------hhhHHHHHHHHHHCC-------CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchh
Q 044812 219 --------R--N------VYAWTAMINGYVQNG-------DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275 (547)
Q Consensus 219 --------~--~------~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 275 (547)
| + ...|...+..--..+ ..+.+..+|++.... ++-+...|...+.-+...|+.+.
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHH
Confidence 0 0 133444444322222 134456677777333 34456677777777778888889
Q ss_pred HH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-C-----------CCC------------hhhHHHH
Q 044812 276 GK-QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-F-----------NKD------------AITWSSI 330 (547)
Q Consensus 276 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-----------~~~------------~~~~~~l 330 (547)
|. .+++..... ++.+...+-..+....+.|++++|..+|++.- . .|+ ...|...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 96 999999864 35667777888888889999999999997621 0 132 2357777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGR-SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (547)
+....+.|+.+.|..+|.+..+. +. +....|...+..-.+ .++.+.|..+|+...+.+ +.+...+...++.....
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhC
Confidence 77778889999999999999875 21 122333322222223 355899999999998864 34566677888888889
Q ss_pred CCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 409 GQLDRALDFIKTM-PVEP----SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+..+.+++.+..|+++
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999986 3233 235888888888899999999999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-10 Score=104.36 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=125.7
Q ss_pred HHHHHHHHHchhcCCCCCChHHHHhHHHHhh-------ccCCc-------hhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-------SLIGL-------SGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
++|..+|++. ... .+-+...|..++..+. +.|++ ++|..++++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~a-l~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQC-LLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHH-HHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566666665 221 1223344444444443 23554 566666666665311334456666666677
Q ss_pred hcCCHHHHHHHHhc-CCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHH
Q 044812 304 KCGSLDCARRVFED-SSFNKD-AI-TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGL 379 (547)
Q Consensus 304 ~~g~~~~A~~~~~~-~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~ 379 (547)
+.|++++|..+|++ +.+.|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777765 233343 22 56666666667777777777777776643 12333333322221 1256777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-P---VEP--SPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666542 224566666666677777777777777665 1 233 3446666666666677777777777777
Q ss_pred HhhCCCCC
Q 044812 454 IQLEPENP 461 (547)
Q Consensus 454 ~~~~~~~~ 461 (547)
.+..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 77766544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=121.92 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC-------CCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc------
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK------ 286 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 286 (547)
+..++..+...+...|++++|+.+++++ ... ..+.....+..+...+...|++++|...++.+.+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQA-LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456778888888888888888888887 331 11112334444555555555555555555554432
Q ss_pred CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-C
Q 044812 287 EL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL------GSKP-D 358 (547)
Q Consensus 287 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~ 358 (547)
+. +....++..+...|. ..|++++|...++++.+. +-.| .
T Consensus 105 ~~~~~~~~~~~~l~~~~~--------------------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYG--------------------------------KRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp TTCHHHHHHHHHHHHHHH--------------------------------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCChHHHHHHHHHHHHHH--------------------------------HcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 11 112233444444444 444444444444444332 1111 1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----C-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC----------
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTY-----R-IKPTTEICACVVDMLGRAGQLDRALDFIKTMP---------- 422 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------- 422 (547)
...+..+...+...|++++|.++++++.+.. + .+....++..+...|...|++++|...++++.
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 2334444444555555555555555443320 0 01123344445555555555555555554431
Q ss_pred CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 423 VEP-------SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 423 ~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
..+ ....+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 001 0111222223333444555555566666666666666777777777777777777777776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-11 Score=101.35 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 4444455555555555555555554431 2234555555556666666666666666665431 224555666666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHH
Q 044812 407 RAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
..|++++|.+.++++ . ...+...+..+...+...|++++|...++++.+..|.++..+..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777766665 1 22356677777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 044812 485 TMMKDR 490 (547)
Q Consensus 485 ~~m~~~ 490 (547)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.9e-10 Score=104.84 Aligned_cols=265 Identities=12% Similarity=0.019 Sum_probs=187.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH----HHHhHHHHhhccCCchhHHHHHHHHHHcCCC-Cc----hhH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV----SLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-HD----VSL 294 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 294 (547)
+......+...|++++|...+++. .......+.. .+..+...+...|+++.|...+++..+.... .+ ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLA-LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344556677889999999999887 3332122222 4556667788889999999998887753211 11 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc-------CCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHH
Q 044812 295 CNALIDMYSKCGSLDCARRVFED-------SSFN--KD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--P--DII 360 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~-------~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~ 360 (547)
+..+...+...|++++|...+++ .+.. |. ...+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56778889999999999988875 2311 22 235667788899999999999999998764321 1 245
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH-----HHHHHhHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-----CVVDMLGRAGQLDRALDFIKTMP-VEPS-----PSI 429 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 429 (547)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999998865421111111121 23345778999999999999872 2221 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-CchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPE-----N-PSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+..+...+...|++++|...++++.+..+. + ...+..++.++...|+.++|.+.+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677888999999999999999998876322 1 23677788999999999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=124.87 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=140.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHH
Q 044812 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACV 401 (547)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 401 (547)
..+|+.|...|.+.|++++|...|++.++. .| +...+..+..++.+.|++++|++.|++..+. .| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 457888888999999999999999998885 45 4778888999999999999999999988865 44 57888899
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
..+|.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999886 4455 467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 044812 480 VAELRTMMKD 489 (547)
Q Consensus 480 A~~~~~~m~~ 489 (547)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-10 Score=107.50 Aligned_cols=214 Identities=9% Similarity=0.049 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCH-------HHHHHHHhc-CC-CCCC-hhhHHHHHHHHHh
Q 044812 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSK-------CGSL-------DCARRVFED-SS-FNKD-AITWSSIVSGYGL 336 (547)
Q Consensus 274 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~-~~-~~~~-~~~~~~li~~~~~ 336 (547)
+.|...|+++.... +.+...|..++..+.. .|++ ++|..+|++ +. +.|+ ...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888765 5677788888877763 5875 899999987 33 3554 5589999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH-hcCCHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPD-II-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG-RAGQLDR 413 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 413 (547)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 78889999999999999999999998641 234555544433322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 414 ALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQL---EPE-NPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 414 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
|..+|++. ...| +...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 2233 5778999999999999999999999999996 342 5668889999999999999999999998
Q ss_pred HhCCC
Q 044812 488 KDRGL 492 (547)
Q Consensus 488 ~~~~~ 492 (547)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-10 Score=107.04 Aligned_cols=230 Identities=11% Similarity=0.035 Sum_probs=116.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHchhcC-CCCCC----hHHHHhHHHHhhccCCchhHHHHHHHHHHcCC-----C-Cchh
Q 044812 225 TAMINGYVQNGDLDEALVLFLEMQLKD-RIEPN----KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-----N-HDVS 293 (547)
Q Consensus 225 ~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~ 293 (547)
......+...|++++|+..|++. ... ...++ ..++..+...+...|+++.|...+.+..+... . ....
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREA-EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHH-HHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34556677889999999999887 332 11222 23455566666666666666666666554210 0 0133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc-------CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHH
Q 044812 294 LCNALIDMYSKCGSLDCARRVFED-------SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKPDIIT 361 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~ 361 (547)
+++.+..+|...|++++|...|++ .+..+ ...+++.+...|...|++++|...+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 455566666666666666665543 11000 1123555555566666666666666555441 11112444
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCC---CCchhHHHHHHHHhHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRI---KPTTEICACVVDMLGRAGQ---LDRALDFIKTMPVEPSP-SIWGALV 434 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~ 434 (547)
+..+...+.+.|++++|...+++..+...- +.....+..+...+...|+ +.+|+..+++....|+. ..+..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555555666666666665555443111 1112233334444444454 55555555554322222 2334444
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 044812 435 SASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~ 455 (547)
..|...|++++|...|+++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=117.53 Aligned_cols=240 Identities=10% Similarity=0.063 Sum_probs=139.2
Q ss_pred hhhHHHHHHHHHcCCCchhHHHHHHHHhh----c----CCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC------C
Q 044812 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQ----M----KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD------R 252 (547)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~a~~~~~~----~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~ 252 (547)
...+..+...+...|++++|....+.... . .......+..+...|...|++++|+..+++. ... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHhCC
Confidence 34688888999999999995333322222 1 1124567888999999999999999999988 332 2
Q ss_pred C-CCChHHHHhHHHHhhccCCchhHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCh
Q 044812 253 I-EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK------ELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324 (547)
Q Consensus 253 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 324 (547)
. +.....+..+...+...|++++|...++.+.+. +..| ...++..+...+...|++++|...++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-------- 177 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ-------- 177 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--------
Confidence 2 223567888899999999999999999888764 1111 23344555555555555555555554
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc------CC
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCL------GSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTY------RI 391 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~ 391 (547)
++.+. +..|+ ..++..+...+...|++++|...++++.+.. ..
T Consensus 178 ------------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 178 ------------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp ------------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ------------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33322 11111 2234444444444455555555444443210 00
Q ss_pred CC-------chhHHHHHHHHhHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 392 KP-------TTEICACVVDMLGRAGQLDRALDFIKTMP-VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 392 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.+ ....+..+...+...+.+.+|...++... ..| +..++..+..+|...|++++|.+.+++++++.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11112222333344455555666666552 234 3457888999999999999999999999887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-10 Score=100.53 Aligned_cols=205 Identities=10% Similarity=0.002 Sum_probs=141.5
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHH
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVS 332 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~ 332 (547)
.|...+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++ +...| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345677777788888888888888888888876436666676688888888888888888876 22234 4456777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHH
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSKP-DI-------ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT---TEICACV 401 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 401 (547)
.|...|++++|...+++..+. .| +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 888888888888888888775 33 33 44666777777888888888888887643 454 4566667
Q ss_pred HHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
...|...|+. .++++ . ...+...|.... ....+.+++|+..++++++.+|.++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7776655443 22222 0 112333443333 23456679999999999999999887777766554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-10 Score=113.82 Aligned_cols=212 Identities=12% Similarity=0.041 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCc-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044812 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL-SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
.+++++..++.. .. ..+.+...+..+...+...|++ ++|...++++.+.. +.+...+..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~-~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEV-LG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHH-HT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHH-hc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356777777765 33 2334677788888888899999 99999999888875 45677899999999999999999999
Q ss_pred Hhc-CCCCCChhhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CcHH
Q 044812 315 FED-SSFNKDAITWSSIVSGYGLH---------GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS--------GLIN 376 (547)
Q Consensus 315 ~~~-~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------g~~~ 376 (547)
|++ +...|+...+..+...|... |++++|...|++..+.. +-+...+..+..++... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 987 45568878888899999999 99999999999998863 23577888888888888 9999
Q ss_pred HHHHHHHHHHHhcCCC---CchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIK---PTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
+|...|++..+.. + .+...|..+..+|...|++++|...|++. ...| +...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998652 2 37788999999999999999999999987 3344 55688888999999999888887654
Q ss_pred HH
Q 044812 452 SL 453 (547)
Q Consensus 452 ~~ 453 (547)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-09 Score=105.50 Aligned_cols=406 Identities=11% Similarity=0.021 Sum_probs=268.7
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC---cHHHHHHHHHHHHhC-CCCchhHH
Q 044812 84 KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---LNVGMLIHGLSIKIG-FVVDVILA 159 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 159 (547)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ ++.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47889999999999999999999999999986 34456667777888788888 999999999998864 13788888
Q ss_pred HHHHHHHHhcCCh--------HHHHHHhccCC------CC-ChhhHHHHHHHHHcCC---Cc---hhHHHHHHHHhhcCC
Q 044812 160 NSLMSMYVKCGKF--------SECLNLFDEMP------QR-NVGSWNVRISGHASSG---DF---SLVVRSRRVFDQMKR 218 (547)
Q Consensus 160 ~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~~g---~~---~~a~~a~~~~~~~~~ 218 (547)
...+....+.++. +.+.++|+... .+ +...|...+.-....+ .. .+...+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665553 23346666522 22 3346776665443321 11 123447777777653
Q ss_pred -C--Ch-hhH---HHHHHHH----------HHCCCHHHHHHHHHHchh-cCCC----C-----------C--C------h
Q 044812 219 -R--NV-YAW---TAMINGY----------VQNGDLDEALVLFLEMQL-KDRI----E-----------P--N------K 257 (547)
Q Consensus 219 -~--~~-~~~---~~li~~~----------~~~~~~~~A~~~~~~m~~-~~~~----~-----------p--~------~ 257 (547)
| +. .+| ..+...+ -...+++.|...+.++.. ..++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2 11 222 2222111 011234445555554310 0011 1 1 0 0
Q ss_pred HHHHhHHHHhhccC-------CchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhc-CCC-CCChhhH
Q 044812 258 VSLVSVLPTCSSLI-------GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR-RVFED-SSF-NKDAITW 327 (547)
Q Consensus 258 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~-~~~-~~~~~~~ 327 (547)
..|...+.---..+ ..+.+..+|++++... +....+|...+..+...|+.++|. .+|++ +.. +.+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 22333333222221 1233456777777654 557788888888888899998996 89876 222 3455667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGS---------KPD------------IITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
...+...-+.|++++|..+|+++..... .|+ ...|...+....+.|..+.|..+|..+.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888899999999999999886410 132 2357777777778899999999999998
Q ss_pred HhcCCCCchhHHHHHHHHhHhc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C
Q 044812 387 NTYRIKPTTEICACVVDMLGRA-GQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE---N 460 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~ 460 (547)
+.. .......|...+..-.+. ++.+.|..+|+.. ....+...|...+......|+.+.|..+|++++...|+ .
T Consensus 462 ~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred Hhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 641 122334444333333344 4589999999987 22235667778888888899999999999999998773 4
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
...|..++..-.+.|+.+.+.++.+++.+.-.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56788888888999999999999999976543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-10 Score=107.50 Aligned_cols=230 Identities=8% Similarity=0.008 Sum_probs=152.7
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC--CChhhHHHHHHHHHHCCCHH
Q 044812 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR--RNVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~ 238 (547)
.....+...|++++|...|++..+ ++..... ....++..+...|...|+++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~---------------------------~~~~~~~~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEK---------------------------ELPFVSDDIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT---------------------------TGGGCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH---------------------------HHhhCCChHHHHHHHHHHHHHHHHcCCcH
Confidence 345566778888888888877432 2222111 12345667777777777777
Q ss_pred HHHHHHHHchhcCCCCC-----ChHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCH
Q 044812 239 EALVLFLEMQLKDRIEP-----NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN-HDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 239 ~A~~~~~~m~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 308 (547)
.|+..+++......-.+ ...++..+...+...|+++.|...+....+. +.+ ....++..+..+|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 77777766521111111 1345666777777778888877777776653 111 1234677788889999999
Q ss_pred HHHHHHHhcC-------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHhccCc--
Q 044812 309 DCARRVFEDS-------SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KP-DIITIVGVLSACGRSGL-- 374 (547)
Q Consensus 309 ~~A~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p-~~~~~~~l~~~~~~~g~-- 374 (547)
++|...|++. + .| ...++..+...|.+.|++++|...+++..+... .| ....+..+...+...++
T Consensus 239 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKV-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9998888752 3 23 245678888899999999999999998876421 12 23456666666777787
Q ss_pred -HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 375 -INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 375 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+.+|..++++.. ..+.....+..+...|...|++++|...|++.
T Consensus 318 ~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 318 KIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777532 22224456778889999999999999988875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=102.24 Aligned_cols=189 Identities=12% Similarity=-0.010 Sum_probs=112.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc---CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED---SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGV 365 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 365 (547)
++..+......+...|++++|...|++ .. + ++...+..+..++...|++++|...+++..+. .| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 445666666677777777777777764 22 2 55555555666677777777777777776664 33 34556666
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCch-------hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTT-------EICACVVDMLGRAGQLDRALDFIKTM-PVEPS---PSIWGALV 434 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 434 (547)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++. ...|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 666777777777777777666542 1123 34555666666666777777766665 44454 23555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.++... +...++++....+.++..|... .....+.+++|...+++..+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 555432 3344555555554443333322 2334455699999999887643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-10 Score=94.40 Aligned_cols=169 Identities=12% Similarity=0.017 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDSS-F-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 369 (547)
...+..+...+...|++++|...+++.- . +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456778888999999999999998742 2 3456778889999999999999999999998863 34678888899999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998752 446788889999999999999999999987 22 345778999999999999999999
Q ss_pred HHHHHHHhhCCCCCch
Q 044812 448 LAYKSLIQLEPENPSN 463 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~ 463 (547)
..++++.+..|.++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-09 Score=99.88 Aligned_cols=268 Identities=9% Similarity=-0.026 Sum_probs=154.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCcc----hHHHHHHHHccCCCcHHHHHHHHHHHHhCCC-Cc----hhHHHHH
Q 044812 92 LINGYVKNHGHNEALELFSNMYYSNVSPDDF----TLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VD----VILANSL 162 (547)
Q Consensus 92 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 162 (547)
....+...|++++|...+++........+.. ++..+...+...|+++.|...+++..+.... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445567888999998888877653221221 3555666777889999998888887654211 11 2335667
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC----ChhhHHHHHHHHHHCCCHH
Q 044812 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~ 238 (547)
...+...|++++|...+++ +.++......+ ....+..+...+...|+++
T Consensus 100 a~~~~~~G~~~~A~~~~~~---------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEK---------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHH---------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHH---------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 7888899999999998877 44444443332 2345677888899999999
Q ss_pred HHHHHHHHchhcCC-CCC--ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHhcCCHH
Q 044812 239 EALVLFLEMQLKDR-IEP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV-SLCN-----ALIDMYSKCGSLD 309 (547)
Q Consensus 239 ~A~~~~~~m~~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~ 309 (547)
+|...+++...... ..+ ...++..+...+...|++++|...++........++. ..+. ..+..+...|+++
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 99999987622111 111 1234555666667777777777777766653211111 1111 2233355667777
Q ss_pred HHHHHHhcCC-CCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHH
Q 044812 310 CARRVFEDSS-FNKD-----AITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKPDI-ITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 310 ~A~~~~~~~~-~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a 378 (547)
+|...+++.- ..+. ...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 7777776532 1111 112344555566666666666666555332 111111 1333344444555555555
Q ss_pred HHHHHHHH
Q 044812 379 LEIYNSVI 386 (547)
Q Consensus 379 ~~~~~~~~ 386 (547)
...+++..
T Consensus 313 ~~~l~~al 320 (373)
T 1hz4_A 313 QRVLLDAL 320 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-09 Score=94.53 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=121.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPD-IITI 362 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~ 362 (547)
.+...+..+...+.+.|++++|...|++. ...|+ ...+..+..+|...|++++|...|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666677777777777777777652 22232 34566677777777777777777777776522 112 3445
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044812 363 VGVLSACGR--------SGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433 (547)
Q Consensus 363 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 433 (547)
..+..++.. .|++++|...|+++.+.+ |+ ......+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666666 777777777777776552 32 22222211111110000 1124677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcC----------CCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASS----------RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 491 (547)
...|...|++++|+..|+++++..|.++ ..+..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8899999999999999999999998854 4788999999876 99999999999987644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-10 Score=101.11 Aligned_cols=223 Identities=17% Similarity=0.175 Sum_probs=154.2
Q ss_pred hhccCCchhHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---------CCCC-ChhhHHH
Q 044812 267 CSSLIGLSGGKQIHGFAIRK-------ELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---------SFNK-DAITWSS 329 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~ 329 (547)
....|+++.|...+++..+. ..+....++..+...|...|++++|...+++. +-.| ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34678888888888887762 22334667888999999999999999998751 1112 2446888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----C-CCCchh
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL------GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTY-----R-IKPTTE 396 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~ 396 (547)
+...|...|++++|...+.+..+. .-.| ...++..+...+...|++++|...++++.+.. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 899999999999999999998764 1123 35678888889999999999999999887641 1 122456
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTMP----------VEPS-PSIWGALVSASVMHGN------SEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~ 459 (547)
++..+...|...|++++|...+++.. ..+. ...|..+...+...+. +..+...++......|.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 78888999999999999999998761 1222 2234444444333332 22333333332223355
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+.++..++.+|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566889999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-08 Score=92.05 Aligned_cols=241 Identities=7% Similarity=0.009 Sum_probs=145.5
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
++-..-.|++..++.-...+ . ... +......+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~-~--~~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF-S--KVT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS-S--CCC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhc-C--ccc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc-
Confidence 34455567777777743333 1 112 223344455666666665531 1112232233333332 2322
Q ss_pred HHHHHHHHhcCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 308 LDCARRVFEDSS-F-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 308 ~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
|+..|++.- . .++...+..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556665421 1 3455555667777888888888888888776654322 456667777778888888888888888
Q ss_pred HHHhcCCCC-----chhHHHHHHHH--hHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 385 VINTYRIKP-----TTEICACVVDM--LGRAG--QLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 385 ~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
|.+. .| +-.+...++.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.
T Consensus 162 ~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8644 45 24444455544 22233 788888888887 334553333344447778888888888888776
Q ss_pred hh----------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 455 QL----------EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 455 ~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+. +|.++.++..++.+....|+ +|.++++++++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 65 47777777777766666776 7788888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=111.73 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 367 (547)
+...++.|..+|.+.|++++|++.|++ +.+.| +...|+.+..+|.+.|++++|+..|++.++. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 466788899999999999999999986 23334 4678899999999999999999999999885 45 4778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++. ...| +...|..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998865 44 6788999999999999999999999987 4456 4668999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 044812 445 MQDLAYKSLIQLE 457 (547)
Q Consensus 445 ~a~~~~~~~~~~~ 457 (547)
+|.+.++++++..
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-09 Score=84.26 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=81.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++ . ...+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3344445555555555555555554431 223445555555556666666666666554 1 12345566677777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.|++++|...++++.+..|.++..+..++.++...|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 788888888888887777777777778888888888888888888777653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.9e-09 Score=90.00 Aligned_cols=184 Identities=8% Similarity=-0.004 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH-HHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SFNKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DI-ITIVG 364 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~-~~~~~ 364 (547)
...+..+...+.+.|++++|+..|++. ...|+ ...+..+..+|.+.|++++|...|++..+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667777788888888888762 11232 2456667777888888888888888877653211 11 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCC
Q 044812 365 VLSACGR------------------SGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKTMPVEP 425 (547)
Q Consensus 365 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 425 (547)
+..++.. .|++++|...|+++.+. .|+ ...+....... ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence 4444432 45666666666666643 232 22221111100 000000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123466788899999999999999999999876 56899999999999999999999999877643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-09 Score=95.07 Aligned_cols=203 Identities=8% Similarity=-0.019 Sum_probs=143.3
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC---C-hhh
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD---VSLCNALIDMYSKCGSLDCARRVFEDS-SFNK---D-AIT 326 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~-~~~ 326 (547)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++. ...| . ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677788889999999999999999998875 223 567888999999999999999999872 2123 2 345
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 327 WSSIVSGYGL--------HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 327 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
+..+..++.. .|++++|...|++..+. .|+... ...+...+...... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~-------------~~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHEL-------------VDDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTT-------------HHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchh-------------HHHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999886 343211 11111111111111 11224
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCCch
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMH----------GNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
..+...|.+.|++++|...|+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56777888889999999988876 22233 34677778888766 88999999999999999988643
Q ss_pred ---HHHHHHHHHcCCCHH
Q 044812 464 ---YVSLSNLYASSRRWD 478 (547)
Q Consensus 464 ---~~~l~~~~~~~g~~~ 478 (547)
...+..++.+.|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-09 Score=96.68 Aligned_cols=200 Identities=11% Similarity=0.040 Sum_probs=144.3
Q ss_pred CchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHH
Q 044812 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHE 342 (547)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~ 342 (547)
++++|...+... ...|...|++++|...|++ .+ .+. ..+|+.+...|...|++++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHH
Confidence 477777776655 4567788999988888864 33 222 4578899999999999999
Q ss_pred HHHHHHHHHHcCC---CC--CHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHH
Q 044812 343 AVLLYNKMVCLGS---KP--DIITIVGVLSACGRS-GLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLD 412 (547)
Q Consensus 343 a~~~~~~m~~~g~---~p--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 412 (547)
|+..+++..+... .+ -..++..+...|... |++++|+..|++..+...-..+ ..++..+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 9999988875411 11 135788888889986 9999999999998764211111 356888899999999999
Q ss_pred HHHHHHHhC-CCCC---CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--cCCC
Q 044812 413 RALDFIKTM-PVEP---SP-----SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN-----YVSLSNLYA--SSRR 476 (547)
Q Consensus 413 ~A~~~~~~~-~~~p---~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~ 476 (547)
+|+..|++. ...| .. ..|..++.++...|++++|+..+++++++.|..... +..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999986 2222 21 257788889999999999999999999998875543 344566665 4577
Q ss_pred HHHHHHHHHHH
Q 044812 477 WDAVAELRTMM 487 (547)
Q Consensus 477 ~~~A~~~~~~m 487 (547)
+++|++.++++
T Consensus 256 ~~~A~~~~~~~ 266 (292)
T 1qqe_A 256 LSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhccC
Confidence 88888887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-09 Score=95.59 Aligned_cols=199 Identities=10% Similarity=-0.073 Sum_probs=131.4
Q ss_pred HhhccCCchhHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhc-------CCCCCC--hhhHHHHH
Q 044812 266 TCSSLIGLSGGKQIHGFAIRK----ELNH-DVSLCNALIDMYSKCGSLDCARRVFED-------SSFNKD--AITWSSIV 331 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~--~~~~~~li 331 (547)
.+...|++++|...+.+..+. +.++ ...+|+.+..+|.+.|++++|+..|++ .+ .+. ..+++.+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg 124 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGANFKFELG 124 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 344556666666666555542 2111 145677788888888888888877764 22 221 34678888
Q ss_pred HHHHhc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch-----hHHHH
Q 044812 332 SGYGLH-GKGHEAVLLYNKMVCLGSKP-D----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-----EICAC 400 (547)
Q Consensus 332 ~~~~~~-~~~~~a~~~~~~m~~~g~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~ 400 (547)
..|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+...-.+.. ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 99999999999887641110 1 3567888888999999999999999987652111121 15677
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVEPSPS------IWGALVSASV--MHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|+..|+++.+++|.....+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 788888999999999999987 4445422 3444555554 456788888888887777775443333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=98.49 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=147.1
Q ss_pred hcCChhHHHHHHHHhhh-------CCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHh------CC-CCchhHHHHHH
Q 044812 98 KNHGHNEALELFSNMYY-------SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI------GF-VVDVILANSLM 163 (547)
Q Consensus 98 ~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~ 163 (547)
..|++++|+..|++..+ ...+....++..+...+...|++++|...++.+++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666655555543 121223456777888888888888888888887765 21 23456788899
Q ss_pred HHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC----CChhhHHHHHHHHHHCCCHHH
Q 044812 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDE 239 (547)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 239 (547)
.+|...|++++|...|++. .+++..... ....+|..+...|...|++++
T Consensus 93 ~~~~~~g~~~~A~~~~~~a---------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 145 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA---------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH---------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHH---------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998773 333333211 235678888888999999999
Q ss_pred HHHHHHHchhcC------CCCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHc-------CCCC-chhHHHHHHHHHHh
Q 044812 240 ALVLFLEMQLKD------RIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-------ELNH-DVSLCNALIDMYSK 304 (547)
Q Consensus 240 A~~~~~~m~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~ 304 (547)
|+..+++. ... +..| ...++..+...+...|++++|...++.+.+. ...+ ....+..+...+..
T Consensus 146 A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 146 VEYYYRRA-LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHH-HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 99998887 332 1122 3456778888888999999999998888764 1122 23334434333333
Q ss_pred cC------CHHHHHHHHhcCCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044812 305 CG------SLDCARRVFEDSSFN-K-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353 (547)
Q Consensus 305 ~g------~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 353 (547)
.+ .+..+...++..+.. | ...++..+...|...|++++|..+|++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 244455555554411 2 2346888899999999999999999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-08 Score=89.17 Aligned_cols=181 Identities=10% Similarity=0.070 Sum_probs=131.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044812 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK---DAITWSSIVSGYGLHGKGHEAVLLYNKMV 351 (547)
Q Consensus 276 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 351 (547)
+...+++..+.+ .++..++..+..++...|++++|++++.+. +..| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555444 344555567888899999999999999873 4333 45567788899999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHH--hc--cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-
Q 044812 352 CLGSKP-----DIITIVGVLSAC--GR--SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM- 421 (547)
Q Consensus 352 ~~g~~p-----~~~~~~~l~~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 421 (547)
+. .| +..+...|..++ .. .+++.+|..+|+++... .|+......++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 356666666663 32 34899999999998754 354333344445889999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 422 PV----------EP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 422 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.. .| |+.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 24 45577677766677787 88999999999999887543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-10 Score=90.50 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=101.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
..+...|++++|+..+...... .|+ ...+..+...|...|++++|++.|++..+.. +-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 3445566777777777766543 332 3345566777778888888888888777542 2366777788888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 411 LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLA-YKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
+++|...|++. ...| +...|..+...|.+.|+.++|.+. ++++++++|.++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 3445 466888888888888888766554 588999999999888888888887775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-08 Score=79.53 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677778888888888888888887753 2356677777888888888888888888887642 33566777888888
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 406 GRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
...|++++|...++++ .. ..+..++..+...+...|++++|...++++.+.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888999988888876 22 235678888888999999999999999999888775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-08 Score=84.76 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=124.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHhcCCCCchhH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG----LINEGLEIYNSVINTYRIKPTTEI 397 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 397 (547)
.+...+..+...|...+++++|..+|++..+.| +...+..|...|.. + ++++|.+.|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456667777777777788888888888877765 45666666666766 5 788888888887653 25566
Q ss_pred HHHHHHHhHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 398 CACVVDMLGR----AGQLDRALDFIKTM-PVEPS---PSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 398 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
+..|...|.. .+++++|..+|++. ...|. ...+..|...|.. .++.++|...|+++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6677777766 77889999988887 33342 6788888888888 78999999999999888 56677889
Q ss_pred HHHHHHHcC-C-----CHHHHHHHHHHHHhCCC
Q 044812 466 SLSNLYASS-R-----RWDAVAELRTMMKDRGL 492 (547)
Q Consensus 466 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 492 (547)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998764 3 89999999999887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-08 Score=91.14 Aligned_cols=163 Identities=8% Similarity=-0.053 Sum_probs=128.8
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+.+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++... .|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHH
Confidence 344456677778888889999999999988875 34 5677888888899999999999999988654 45443322
Q ss_pred -HHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHcC
Q 044812 400 -CVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASS 474 (547)
Q Consensus 400 -~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 474 (547)
.....+...++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ...+..++.+|...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2233356677788888888776 3344 56789999999999999999999999999999987 78899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 044812 475 RRWDAVAELRTMMK 488 (547)
Q Consensus 475 g~~~~A~~~~~~m~ 488 (547)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999999888754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-08 Score=82.23 Aligned_cols=102 Identities=8% Similarity=-0.025 Sum_probs=89.1
Q ss_pred CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 044812 390 RIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 390 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (547)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3345 4567778888889999999999999887 3345 67789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 467 LSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
++.+|.+.|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=104.79 Aligned_cols=169 Identities=11% Similarity=-0.068 Sum_probs=114.6
Q ss_pred HhcCCHHHHHHHHhc-C--------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044812 303 SKCGSLDCARRVFED-S--------SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372 (547)
Q Consensus 303 ~~~g~~~~A~~~~~~-~--------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 372 (547)
...|++++|++.+++ + ...| +...+..+...|...|++++|...|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 566777777777764 2 2223 34566777777777777777777777777642 22456677777777777
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
|++++|...|++..+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777654 33 56667777777777777777 7777765 2334 455777777777777788888877
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
|+++++.+|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777766544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-09 Score=85.01 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=102.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHG 441 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 441 (547)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556778899999999998764 344 4566778899999999999999999987 4455 5779999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH-HHHHHhC
Q 044812 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL-RTMMKDR 490 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 490 (547)
++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5776553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-08 Score=100.83 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=124.8
Q ss_pred cCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.|++++|...|++. ...| +...|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999873 3344 46789999999999999999999999998863 235788899999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhC
Q 044812 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH---GNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 457 (547)
++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++... |+.++|.+.++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998752 336788999999999999999999999987 3344 567889999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 044812 458 PENPSNYVSLS 468 (547)
Q Consensus 458 ~~~~~~~~~l~ 468 (547)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-08 Score=84.63 Aligned_cols=157 Identities=8% Similarity=-0.014 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM- 404 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 404 (547)
+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++.+. .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 444555566666666666666665543 23 3455666666666677777777776666543 2233222221111
Q ss_pred hHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHcCCCHHHH
Q 044812 405 LGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 480 (547)
+...+...+|...+++. ...| +...+..+..++...|++++|...|+++++.+|.. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11222223456666654 3345 56788889999999999999999999999998764 55889999999999999999
Q ss_pred HHHHHHHH
Q 044812 481 AELRTMMK 488 (547)
Q Consensus 481 ~~~~~~m~ 488 (547)
...+++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=82.12 Aligned_cols=98 Identities=8% Similarity=0.031 Sum_probs=84.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5566777888888999999999999876 3334 6778888999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999886543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-08 Score=75.72 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 455666667777777777777777776541 235667777777777777777777777765 2333 456777777888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
...|++++|++.|+++++++|.++.++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888877777766654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-07 Score=82.27 Aligned_cols=160 Identities=9% Similarity=-0.041 Sum_probs=120.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHH
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDI----ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICA 399 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 399 (547)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778888999999999998877421 2222 13334666777888999999999998763221223 33688
Q ss_pred HHHHHhHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTMP-------V-EPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNY 464 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 464 (547)
.+...|...|++++|...++++- . .+. ..++..++..|...|++++|+..++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888761 1 122 3378889999999999999999999998864222 5578
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHH
Q 044812 465 VSLSNLYASSRR-WDAVAELRTMMK 488 (547)
Q Consensus 465 ~~l~~~~~~~g~-~~~A~~~~~~m~ 488 (547)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999988874
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-07 Score=96.05 Aligned_cols=189 Identities=13% Similarity=0.043 Sum_probs=141.5
Q ss_pred hccCCchhHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhc
Q 044812 268 SSLIGLSGGKQIHGFAI--------RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLH 337 (547)
Q Consensus 268 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~ 337 (547)
...|++++|...++... +.. +.+...+..+..+|...|++++|+..|++. .. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 332 446677888899999999999999999862 22 34667888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (547)
|++++|...|++..+. .| +...+..+..++...|++++ ++.|+++.+.. +.+...|..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 34 46778888889999999999 99999988652 3367788899999999999999999
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCCCCCc
Q 044812 417 FIKTM-PVEPSP-SIWGALVSASVMHGN-----SEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 417 ~~~~~-~~~p~~-~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 462 (547)
.|++. ...|+. ..+..+..++...++ .+...+..+...+..+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99987 566764 577777777766555 23334444444444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=9.2e-08 Score=82.56 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=89.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (547)
+...|.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 7778888888888888888888753 2256778888888888888888888888887652 235677777777776555
Q ss_pred C--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 410 Q--LDRALDFIKTMPVEPSP--SIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 410 ~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
. .+.+...++... .|+. ..+.....++...|++++|+..|+++++..|.
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 345555665553 3333 34455566677788888888888888888885
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=82.44 Aligned_cols=125 Identities=10% Similarity=0.069 Sum_probs=86.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...+++. ... .+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344455566666777766666542 345566666667777777777777776665 222 345677777778888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENP----------------SNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.|++++|+..++++.+..|.+. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777666 677888888888888888888888776544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-07 Score=85.45 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=154.3
Q ss_pred HCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc-cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044812 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS-LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (547)
..|++++|.+++++. .+. .+.. +.+ .++++.|...|..+ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a-~k~-~~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKA-EKY-LKTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHH-HHH-HCCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHH-HHH-cccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 357788999998877 331 1111 122 46677777666543 4567788999988
Q ss_pred HHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHH
Q 044812 312 RRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPD--IITIVGVLSACGRSGLINE 377 (547)
Q Consensus 312 ~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~l~~~~~~~g~~~~ 377 (547)
...|.+ .+ .+. ..+|+.+...|...|++++|...|++..+.-. .|. ..++..+...|.. |++++
T Consensus 56 ~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 56 KDAYLQEAEAHANNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 888764 23 221 34688888999999999999999988765311 121 3567788888888 99999
Q ss_pred HHHHHHHHHHhcCCCC----chhHHHHHHHHhHhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHH
Q 044812 378 GLEIYNSVINTYRIKP----TTEICACVVDMLGRAGQLDRALDFIKTM-P---VEPS----PSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 378 a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~ 445 (547)
|+..|++..+...-.. ...++..+...|.+.|++++|+..|++. . ..++ ...+..++.++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998875421111 1467888899999999999999999876 1 1122 2366777778888899999
Q ss_pred HHHHHHHHHhhCCCCCch-----HHHHHHHHHcCCCHHHHHHH
Q 044812 446 QDLAYKSLIQLEPENPSN-----YVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 483 (547)
|...|++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999999 88865543 33455555 56777666663
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=95.51 Aligned_cols=148 Identities=11% Similarity=0.003 Sum_probs=101.2
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHH
Q 044812 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLY 347 (547)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 347 (547)
.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++ +...| +...+..+...|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888877654 44567788888888888999999888876 23333 4667888888888889999999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc---CCHHHHHHHHHhC
Q 044812 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA---GQLDRALDFIKTM 421 (547)
Q Consensus 348 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 421 (547)
++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888753 2356778888888888899999999888887652 23567778888888888 8888888888876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=9.7e-06 Score=79.59 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
..|...+..+.+.++.+.|..+|.+. .. ..++...|......- ...++.+.|..+|+...+.++ -++..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 34666666666778899999999988 32 123444443222211 123368999999999887643 23455666777
Q ss_pred HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788899999999999984 3567888888877888999999998888875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-07 Score=81.59 Aligned_cols=187 Identities=10% Similarity=-0.056 Sum_probs=131.1
Q ss_pred ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCCh----hhHH
Q 044812 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH--DVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDA----ITWS 328 (547)
Q Consensus 256 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~ 328 (547)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|++. ...|+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667788999999999999999999864221 2357788999999999999999999872 223332 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 329 SIVSGYGL------------------HGKGHEAVLLYNKMVCLGSKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 329 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
.+..++.. .|++++|...|++.++. .|+.. ..... .....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 55555554 57899999999999885 45432 21111 111111110
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+...
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112234677888999999999999987 33343 2468889999999999999999999998888876543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-07 Score=79.30 Aligned_cols=174 Identities=8% Similarity=-0.105 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHH
Q 044812 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG----KGHEAVLLYNKM 350 (547)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m 350 (547)
+|.+.|+...+.| +...+..+...|...+++++|...|++.--.-+...+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666665 6677888888888899999999999874313466777888888877 6 899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHhHh----cCCHHHHHHHHH
Q 044812 351 VCLGSKPDIITIVGVLSACGR----SGLINEGLEIYNSVINTYRIKP---TTEICACVVDMLGR----AGQLDRALDFIK 419 (547)
Q Consensus 351 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~A~~~~~ 419 (547)
.+.| +...+..|...|.. .+++++|.+.|++..+. .+ .+..+..|...|.. .+++++|..+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 56677777777777 88999999999988754 33 26778888888888 789999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCC
Q 044812 420 TM-PVEPSPSIWGALVSASVMH-G-----NSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 420 ~~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 458 (547)
+. ...++...+..|...|... | +.++|...|+++.+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 3235666777888887753 3 89999999999988864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=85.31 Aligned_cols=163 Identities=8% Similarity=-0.059 Sum_probs=117.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCc--hh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-----IITIVGVLSACGRSGLINEGLEIYNSVINTYRI--KPT--TE 396 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 396 (547)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566677888888888888887776532211 122344555677888999999998887643111 111 44
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTMP----VEPS-----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE------NP 461 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~ 461 (547)
+++.+...|...|++++|...+++.- ..|+ ..++..++.+|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888889999999999998887751 1222 258888999999999999999999999876421 14
Q ss_pred chHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 044812 462 SNYVSLSNLYASSRRWDAV-AELRTMMK 488 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 488 (547)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77777754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.7e-08 Score=76.07 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 044812 391 IKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467 (547)
Q Consensus 391 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 467 (547)
+.| ....+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 345 3466778889999999999999999987 3344 677999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC
Q 044812 468 SNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-07 Score=77.33 Aligned_cols=127 Identities=6% Similarity=0.036 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++. ...| +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445666667777888888888888777542 335677777888888888888888888776 2233 567888899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHcCCCHHHHHHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL--YASSRRWDAVAELRTMMK 488 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 488 (547)
...|++++|...++++.+..|.++..+..+..+ +.+.|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999988887555554 788899999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-06 Score=77.25 Aligned_cols=148 Identities=15% Similarity=0.172 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC-----
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN--EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ----- 410 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 410 (547)
+++++++.+++++.+.. +-|...+..-.-.+...|.++ ++++.++++.+.. +-+...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhh
Confidence 34444444444444432 113333333333333334433 4444444444331 1233344333333333333
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhC---CCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 411 -LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS-EMQDLAYKSLIQLE---PENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 411 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44444444443 1122 344455444444444442 22333444444333 44444555555555555555555555
Q ss_pred HHHHH
Q 044812 484 RTMMK 488 (547)
Q Consensus 484 ~~~m~ 488 (547)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.7e-07 Score=81.04 Aligned_cols=158 Identities=9% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCChhhHHHH-HHHHHhc
Q 044812 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-FNKDAITWSSI-VSGYGLH 337 (547)
Q Consensus 260 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-i~~~~~~ 337 (547)
+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++.. ..|+....... ...+...
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 3344444444455555555555444443 3344556666666666666666666666532 23433322221 1224455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
++.+.|...+++..... +.+...+..+...+...|++++|...|+++.+...-..+...+..++..|...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 55555666666665542 22455556666666666666666666666655421111244555555555555655555555
Q ss_pred HH
Q 044812 418 IK 419 (547)
Q Consensus 418 ~~ 419 (547)
++
T Consensus 278 ~r 279 (287)
T 3qou_A 278 YR 279 (287)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-07 Score=74.69 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=83.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4455666777888889999999988876 3334 6678888999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.7e-06 Score=74.23 Aligned_cols=231 Identities=10% Similarity=-0.021 Sum_probs=168.7
Q ss_pred HHCCC-HHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhhccC--CchhHHHHHHHHHHcCCCCchhHHHHHHHHH----H
Q 044812 232 VQNGD-LDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCSSLI--GLSGGKQIHGFAIRKELNHDVSLCNALIDMY----S 303 (547)
Q Consensus 232 ~~~~~-~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 303 (547)
.+.|. .++|+++++.+ .. +.|+. ..|+.--.++...+ +++++...++.+...+ +-+..+|+.-..++ .
T Consensus 43 ~~~~e~s~~aL~~t~~~-L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELG-IN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHH-HH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 34444 46788888877 44 45544 34555566666666 7888888888888765 44455555444444 4
Q ss_pred hc---CCHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-
Q 044812 304 KC---GSLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGKGH--EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL- 374 (547)
Q Consensus 304 ~~---g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~- 374 (547)
.. +++++++.+++++ . +.|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...++.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 44 7888998888763 3 567778888877788888888 999999999987533 66677666666666666
Q ss_pred -----HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCH
Q 044812 375 -----INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR-ALDFIKTM-PV----EPSPSIWGALVSASVMHGNS 443 (547)
Q Consensus 375 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~ 443 (547)
++++++.++.++... +-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..+..++.+.|+.
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred chhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 899999999988752 4478889888888888887444 55677765 21 34677899999999999999
Q ss_pred HHHHHHHHHHHh-hCCCCCchHHHHHHH
Q 044812 444 EMQDLAYKSLIQ-LEPENPSNYVSLSNL 470 (547)
Q Consensus 444 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~ 470 (547)
++|+++++.+.+ .+|.....|...+..
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999999997 699888777766554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.8e-07 Score=78.00 Aligned_cols=186 Identities=10% Similarity=0.024 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH-HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (547)
.+-.....+...|++++|+..|++. .. ..|+.. .+.. . . .... ..........+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~-~-~---~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQT-IA--LNIDRTEMYYW-T-N---VDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCHHHHHHHHH-H-H---SCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCChHHHHH-h-h---hcch--------------hhhhHHHHHHHHHH
Confidence 3444566777889999999988887 33 233322 1111 0 0 0000 00112233447778
Q ss_pred HHhcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCc--HH
Q 044812 302 YSKCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGL--IN 376 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~--~~ 376 (547)
|.+.|++++|+..|++ +.. +.+...+..+...|...|++++|...|++..+. .| +...+..+..++...|. ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHH
Confidence 8888888888888876 222 345667888888888888888888888888875 34 46677777777655543 34
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVS 435 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 435 (547)
.+...++... ...|....+.....++...|++++|...|++. ...|+......+..
T Consensus 142 ~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4455555443 22232333444555666778888888888876 56787665554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-07 Score=71.56 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|..+++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4456666666777777777777777776542 235566677777777777777777777765 22 2356678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999888888888888887776543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-07 Score=75.94 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHH
Q 044812 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (547)
+..+...+...|++++|...|++..+.++ .+...+..+...+...|+++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-------------------------------~~~~a~~~la~~~~~~g~~~ 57 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-------------------------------SRGDVKLAKADCLLETKQFE 57 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-------------------------------TSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------------------------------CcHHHHHHHHHHHHHCCCHH
Confidence 44455667777777777777777654322 35667788888888888888
Q ss_pred HHHHHHHHchhcCCCCCChHHHHhHHHH-hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 239 EALVLFLEMQLKDRIEPNKVSLVSVLPT-CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 239 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
+|+..|+.. .. ..|+.......... +...+....+...++...+.. +.+...+..+..++...|++++|...|++
T Consensus 58 ~A~~~~~~a-~~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 58 LAQELLATI-PL--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHTTC-CG--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHh-hh--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 888888877 33 22333222221111 112223334556666665543 33455666666666666666666666655
Q ss_pred -CCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044812 318 -SSFNKD---AITWSSIVSGYGLHGKGHEAVLLYNKMV 351 (547)
Q Consensus 318 -~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~ 351 (547)
+...|+ ...+..+...+...|+.++|...|++..
T Consensus 134 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 134 ILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 222332 3356666666666666666666666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-06 Score=76.11 Aligned_cols=145 Identities=7% Similarity=-0.072 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044812 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 374 (547)
+..+...+...|++++|...|++.- .|+...|..+...|...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 4455666667777777777777654 5666667777777777777777777777766642 2245566666666777777
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS-PSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
+++|.+.|++..+...-.+... +...|. ...|+ ...+..+..++...|++++|.+.++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776654311111000 000000 12333 357888899999999999999999999
Q ss_pred HhhCCCC
Q 044812 454 IQLEPEN 460 (547)
Q Consensus 454 ~~~~~~~ 460 (547)
++..|.+
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9998865
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-07 Score=72.67 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 4556666677777788888888887776542 235667777777888888888888888775 2233 46688888889
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998888999999998888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-07 Score=72.98 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++. ... .+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4455555556666666666666666655321 224555666666666666666666666654 222 346677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
+...|++++|...++++.+..|.+...+..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999998888888888888888876654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=79.53 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=83.7
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--H
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA-SVMHGNS--E 444 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~ 444 (547)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566777777777766542 235566777777777777777777777765 2223 55567777777 6677887 8
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+|...++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-07 Score=86.47 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHhHhcCCHHHHHHHHHhC-C
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----------------TEICACVVDMLGRAGQLDRALDFIKTM-P 422 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 422 (547)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555666666655555543 122 467888889999999999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 044812 423 VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV-AELRTMMK 488 (547)
Q Consensus 423 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 488 (547)
..| +...|..+..+|...|++++|+..|+++++.+|.++.++..++.++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 6778999999999999999999999999999999999999999999999999998 45666663
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=86.24 Aligned_cols=193 Identities=7% Similarity=-0.044 Sum_probs=125.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+...+..+...+.+.|++++|...|++. .. +.+...|..+...|...|++++|...+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445666777777888888888888752 22 3356677788888888888888888888887752 2246677778888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
+...|++++|...|++..+. .|+. ..+...+....+......... .......++......+... ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 88888888888888877654 2211 111111111111111111111 2222333444444444332 368999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 044812 448 LAYKSLIQLEPENPSNYVSLSNLYASS-RRWDAVAELRTMMKDR 490 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 490 (547)
+.++++.+.+|.+......+...+.+. +.+++|.++|....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7799999999987653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-06 Score=76.14 Aligned_cols=160 Identities=8% Similarity=-0.008 Sum_probs=121.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-C---CCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 044812 297 ALIDMYSKCGSLDCARRVFEDSS-F---NKDA----ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PD----IITIV 363 (547)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~~-~---~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~ 363 (547)
..+..+...|++++|..++++.. . .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999998621 1 1221 12334667777888999999999999884322 22 34688
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhc----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTY----RIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-------PVEPS-PSIW 430 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 430 (547)
.+..+|...|++++|...|+++.+.. +..+ ...++..+...|.+.|++++|...+++. ...+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999987521 1112 2347888999999999999999998876 12233 5689
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhh
Q 044812 431 GALVSASVMHGN-SEMQDLAYKSLIQL 456 (547)
Q Consensus 431 ~~l~~~~~~~~~-~~~a~~~~~~~~~~ 456 (547)
..++.++...|+ .++|.+.++++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998865
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-06 Score=83.03 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc-CCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA-GQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
..|...+....+.+..+.|..+|+.+ +.. ..+...|...+..-... ++.+.|..+|+.. ..-| +...|...+.-
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 44566666666778899999999988 431 22444554333332333 3699999999876 1123 34556677777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
....|+.+.|..+|+++ +.....|...+..-...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78899999999999998 23566788888888888999999998888763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-07 Score=71.81 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=77.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566677777888888888888776 2233 56788888888888999999999999999999888888899999999
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 044812 473 SSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~ 490 (547)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999988887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=85.36 Aligned_cols=197 Identities=9% Similarity=-0.033 Sum_probs=147.7
Q ss_pred ccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 044812 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348 (547)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 348 (547)
..|++++|..++++..+... .. .+...++++.|...|++. ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 35677888888887776432 11 011147788888877654 456788999999999998
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CC--chhHHHHHHHHhHhcCCHHHHHHHHH
Q 044812 349 KMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRI--KP--TTEICACVVDMLGRAGQLDRALDFIK 419 (547)
Q Consensus 349 ~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 419 (547)
+..+. |-.+ -..+|..+...|...|++++|...|++..+.+.- .+ ...++..+...|.. |++++|+..++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87654 2111 1457888889999999999999999987654211 11 24677888889988 99999999998
Q ss_pred hC-CCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHcCCCHHHHHHHHH
Q 044812 420 TM-PVE---PS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP------SNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 420 ~~-~~~---p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
+. .+. .+ ..++..+...+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 111 11 45788899999999999999999999998765443 266778888899999999999999
Q ss_pred HHH
Q 044812 486 MMK 488 (547)
Q Consensus 486 ~m~ 488 (547)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-07 Score=69.53 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=81.8
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCchHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSN 469 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 469 (547)
+...+..+...+...|++++|...+++. ... .+...|..+..++...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556666777788888888888888776 222 35668888888999999999999999999999998 8889999999
Q ss_pred HHHcC-CCHHHHHHHHHHHHhCCC
Q 044812 470 LYASS-RRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 470 ~~~~~-g~~~~A~~~~~~m~~~~~ 492 (547)
++... |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999876654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-06 Score=71.95 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455556666666666666666666665431 224555566666666666666666666554 2223 34456666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (547)
+...|++++|+..|+++++.+|.++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 666666666666666666666666554433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-06 Score=77.13 Aligned_cols=164 Identities=7% Similarity=-0.004 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--H
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFED-SSFNK-DA------ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPD--I 359 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 359 (547)
..+...+..+...|++++|.+.+++ +...+ .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455677788899999999999864 11112 11 2244456677888999999999999876421 122 4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHhHhcCCHHHHHHHHHhC-C------CCC-C
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-----TEICACVVDMLGRAGQLDRALDFIKTM-P------VEP-S 426 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~ 426 (547)
.+++.+...|...|++++|...|++..+.....|+ ..++..+...|...|++++|...+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999999998732111222 257888999999999999999999876 1 111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 044812 427 PSIWGALVSASVMHGNSEMQ-DLAYKSLIQL 456 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 456 (547)
..+|..+..+|...|++++| ...++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56889999999999999999 8888888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.7e-07 Score=78.86 Aligned_cols=135 Identities=11% Similarity=-0.014 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHh
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT--TEICACVVDML 405 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 405 (547)
..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677777888888877777654 344334455555677788888888888755321 1 111 23566677778
Q ss_pred HhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 044812 406 GRAGQLDRALDFIKTMP---VEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 467 (547)
.+.|++++|+..|++.. ..|. ...+.....++.+.|+.++|..+|+++...+|. +..+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888762 1143 335666777788888888888888888888886 5555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=74.55 Aligned_cols=152 Identities=9% Similarity=-0.012 Sum_probs=82.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCC-chhHHHHHHHHhHhcCCHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY---RIKP-TTEICACVVDMLGRAGQLD 412 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~ 412 (547)
.|++++|.+.++..... .......+..+...+...|++++|...+++..+.. +..+ ....+..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555533322221 11123445555555555555555555555544311 1111 2344555566666666666
Q ss_pred HHHHHHHhC-C---CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCC----chHHHHHHHHHcCCCH
Q 044812 413 RALDFIKTM-P---VEP-S----PSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PENP----SNYVSLSNLYASSRRW 477 (547)
Q Consensus 413 ~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~ 477 (547)
+|...+++. . ..+ + ...+..+...+...|++++|...++++++.. ..++ .++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666544 0 011 1 2356667777777788888888777776542 1121 2346777888888888
Q ss_pred HHHHHHHHHHHh
Q 044812 478 DAVAELRTMMKD 489 (547)
Q Consensus 478 ~~A~~~~~~m~~ 489 (547)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7.8e-07 Score=71.77 Aligned_cols=101 Identities=9% Similarity=-0.022 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++. ...| +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3456666677777888888888888877542 236777777888888888888888888776 3334 45678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|...|++++|+..|+++++..|+++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888999999999999888887653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-07 Score=70.77 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=82.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (547)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677888999999999999887 3345 6778999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 044812 475 RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 475 g~~~~A~~~~~~m~~~~ 491 (547)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-06 Score=70.03 Aligned_cols=99 Identities=8% Similarity=-0.015 Sum_probs=80.6
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 393 PTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777777788888888888888765 2233 466888888888999999999999999999999888899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCC
Q 044812 471 YASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|...|++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999998886543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.4e-07 Score=72.76 Aligned_cols=115 Identities=9% Similarity=-0.001 Sum_probs=90.3
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC
Q 044812 347 YNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE 424 (547)
Q Consensus 347 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 424 (547)
|+++.. +.| +...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 344 34566777778888999999999999887652 336778888888999999999999999886 333
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 425 P-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 425 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
| +...+..+..++...|++++|+..|+++++..|.++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 4 5668888999999999999999999999999988776543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-06 Score=65.88 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344445555555666666666666555431 224455555555566666666666666554 1222 345666666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666677777777776666666666555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=9.3e-07 Score=75.51 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=73.3
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
..+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|+..|+++++..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888889999998888876 2234 567889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHhCC
Q 044812 474 SRRWDAVA-ELRTMMKDRG 491 (547)
Q Consensus 474 ~g~~~~A~-~~~~~m~~~~ 491 (547)
.|+.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888877 5566665443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=76.98 Aligned_cols=127 Identities=11% Similarity=-0.009 Sum_probs=102.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP----SIWGALVSAS 437 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~ 437 (547)
...+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 344566788899999999999988643 454336666777889999999999999977444433 3678889999
Q ss_pred HHcCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLE--PE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998533 33 34578899999999999999999999998754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=74.25 Aligned_cols=154 Identities=10% Similarity=-0.017 Sum_probs=98.1
Q ss_pred HhcCCHHHHHH---HHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCc
Q 044812 303 SKCGSLDCARR---VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGL 374 (547)
Q Consensus 303 ~~~g~~~~A~~---~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~ 374 (547)
...|++++|.+ .+.... ......+..+...+...|++++|...+++..+. +..| ....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34567777777 443322 223456677777777778888887777776552 2222 24556667777778888
Q ss_pred HHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcC
Q 044812 375 INEGLEIYNSVINTYRIKP-----TTEICACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSIWGALVSASVMHG 441 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~ 441 (547)
+++|.+.+++..+...-.+ ....+..+...+...|++++|...+++. ...++ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 8888888877655311111 2345667777888888888888887765 11122 234577788888899
Q ss_pred CHHHHHHHHHHHHhhC
Q 044812 442 NSEMQDLAYKSLIQLE 457 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~ 457 (547)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999888887653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=73.12 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=99.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hHhcCCH--
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM-LGRAGQL-- 411 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 411 (547)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888887753 3367788888889999999999999999987652 3366777788888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
++|...+++. ...| +...+..+..++...|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 3334 567888899999999999999999999999999876544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=67.58 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=87.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
...+..+...+...|++++|...++++ .. ..+..++..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 22 3467789999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 044812 473 SSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~ 491 (547)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=66.57 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=87.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
....+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556777888999999999999999987 3334 6778999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=67.57 Aligned_cols=111 Identities=5% Similarity=-0.112 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 455666667777888888888888777542 335677777888888888888888888776 3334 466888888999
Q ss_pred HHcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLE------PENPSNYVSLSNLYA 472 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~ 472 (547)
...|++++|...|+++++.+ |.++..+..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999888 777777766666543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=68.57 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=89.0
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 393 PTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++.+..|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999987 4445 677899999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 044812 471 YASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~ 490 (547)
+.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=69.93 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++. ...| +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3455566667788888888888888887652 336777888888888889999998888876 2334 55678888999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
+...|++++|+..|+++++..|.++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 99999999999999999999988876655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-06 Score=67.50 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 044812 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWG 431 (547)
Q Consensus 358 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 431 (547)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3445555555666666666666666665532 343 455566666666667777776666654 2223 455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
.+..++...|++++|...|+++++..|.++..+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777888888888888888888888877776666665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.6e-07 Score=69.11 Aligned_cols=94 Identities=4% Similarity=-0.015 Sum_probs=66.7
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-------hHHH
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS-------NYVS 466 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ 466 (547)
..+..+...+.+.|++++|+..|++. .+.| +...|..+..+|...|++++|++.++++++++|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34555666777777777777777765 3334 4567777888888888888888888888877665543 5666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 044812 467 LSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++.++...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777788888888888877654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=69.98 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=42.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (547)
.+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|.++..|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444444444444444444443 1122 3334444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 044812 475 RRWDAVAELRTMMK 488 (547)
Q Consensus 475 g~~~~A~~~~~~m~ 488 (547)
|++++|.+.+++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-06 Score=68.92 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=88.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
+...+..+...+...|++++|...|++. ...|+ ...|..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5677888899999999999999999987 56677 578899999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC
Q 044812 469 NLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6.6e-06 Score=67.62 Aligned_cols=128 Identities=14% Similarity=-0.014 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
.+..+...+...|++++|...|.+..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 35556666777777777777777776642 2246667777777777788888888877776542 33566777777777
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-SPSIWG--ALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
...|++++|...+++. ...| +...+. ..+..+...|++++|+..+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888888887776 2223 334443 3333466778888888888776543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-06 Score=66.17 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=87.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 5667788889999999999999999987 2334 6778999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=69.24 Aligned_cols=64 Identities=6% Similarity=-0.104 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQL-------EPENPSNY----VSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 348899999999999999999999999999 99999999 99999999999999999999988653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-06 Score=66.54 Aligned_cols=111 Identities=10% Similarity=-0.086 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044812 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVS 435 (547)
Q Consensus 358 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 435 (547)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 46667777777777778888887777776542 235667777777788888888888887766 2233 5668888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-----CCchHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPE-----NPSNYVSLSNL 470 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~ 470 (547)
++...|++++|+..|+++++..|. +......+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 889999999999999999888766 44444444444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.4e-06 Score=81.50 Aligned_cols=131 Identities=7% Similarity=0.075 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-------------chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-------------TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP 425 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 425 (547)
..+..+...+.+.|++++|...|++..+...-.+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3445555556666666666666666554311111 1577888899999999999999999887 3334
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH-HHHHHHhC
Q 044812 426 -SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE-LRTMMKDR 490 (547)
Q Consensus 426 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~ 490 (547)
+...|..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|+++++.+ .++.|..+
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577899999999999999999999999999999999999999999999999988774 45655433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=67.51 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=57.3
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVEPS-P---SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYA 472 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 472 (547)
+...+...|++++|...|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666654 11222 1 355666667777777777777777777777766 555677777777
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 044812 473 SSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~ 490 (547)
..|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0001 Score=67.67 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH----
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ-------LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS---- 443 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~---- 443 (547)
++++.++++.+.. +-|...|+.....+.+.++ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 185 SELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 5555555555431 2244555555444444443 45555555544 2223 445555555555544432
Q ss_pred ----------------HHHHHHHHHHHhhC------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 444 ----------------EMQDLAYKSLIQLE------PENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 444 ----------------~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
....+....+.... +.++.++..|+.+|...|+.++|.++++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222222222211 3556677788888888888888888888875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-06 Score=67.67 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577778888888888888888888888888888888888888888888888888888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=83.65 Aligned_cols=118 Identities=7% Similarity=0.051 Sum_probs=92.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS 443 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 443 (547)
...+...|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|...+++. ...| +...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 334567788888888888887652 235778888888888888888888888876 3344 566888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH--HHcCCCHHHHHHHHH
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNL--YASSRRWDAVAELRT 485 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 485 (547)
++|++.++++++..|.++..+..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999888888888 888899999999887
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-05 Score=76.58 Aligned_cols=163 Identities=6% Similarity=-0.081 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCC-chhH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDI----ITIVGVLSACGRSGLINEGLEIYNSVINTY---RIKP-TTEI 397 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 397 (547)
+..+...|...|++++|.+.+..+...- ..++. ...+.+...+...|+.+.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667778888888888888887765431 11111 223334444566788888888887765421 1122 3567
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC----Cc
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-------PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLE---PEN----PS 462 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~ 462 (547)
+..+...|...|++++|..++++. ..+|. ..++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778889999999999999988765 11232 4478888899999999999999999988753 222 23
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888899999999888877643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=62.72 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=72.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTT---EICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVS 435 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 435 (547)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...+++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455667777777777777776542 1122 46666777777888888888887765 22233 456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
++...|++++|...|+++++..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8999999999999999999998887655544433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00077 Score=61.83 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=156.6
Q ss_pred HHHCCCHHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhhccC-CchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 044812 231 YVQNGDLDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCSSLI-GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC-G- 306 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 306 (547)
..+.+..++|+++++.+ .. +.|+. ..|+.--..+...+ .++++...++.+.... +-+..+|+.-..++... +
T Consensus 64 ~~~~e~se~AL~lt~~~-L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEII-VR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHH-HH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 34445556788888877 44 34443 34555555555666 4788888888888765 45666777666666665 6
Q ss_pred CHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc--
Q 044812 307 SLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGH--------EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL-- 374 (547)
Q Consensus 307 ~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-- 374 (547)
++++++++++++ .. ..|..+|+--.-.+.+.|.++ ++++.++++.+... -|...++.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 788888888763 22 345667766555555555555 89999999988743 367777777777777765
Q ss_pred -----HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH--------------------HHHHHHHHhC-CC-----
Q 044812 375 -----INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL--------------------DRALDFIKTM-PV----- 423 (547)
Q Consensus 375 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~----- 423 (547)
++++++.+++.+... +-|...|+.+-..+.+.|+. .+..++..++ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 688899988887652 33777887777777666653 4445555454 11
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCCchHHHHHHH
Q 044812 424 --EPSPSIWGALVSASVMHGNSEMQDLAYKSLI-QLEPENPSNYVSLSNL 470 (547)
Q Consensus 424 --~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~ 470 (547)
.+....+..|+..|...|+.++|.++++.+. +.+|.....|...+..
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 2577789999999999999999999999997 5578766666655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=63.09 Aligned_cols=109 Identities=6% Similarity=0.015 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV----EPS----PSIWG 431 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 431 (547)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++. .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34445555555556666666665555431 224445555555566666666666665554 11 122 55667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
.+..++...|++++|.+.++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777777888888888888888887776 4555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.9e-07 Score=68.17 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 409 GQLDRALDFIKTM-PV---EPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
|++++|+..|++. .. .|+ ...+..+..++...|++++|+..++++++..|.++.++..++.++...|++++|.+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555444 22 132 235555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHh
Q 044812 484 RTMMKD 489 (547)
Q Consensus 484 ~~~m~~ 489 (547)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-05 Score=61.80 Aligned_cols=95 Identities=6% Similarity=-0.014 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV----EPS----PSIWGA 432 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 432 (547)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444444555555555555555544321 123444555555555555555555555443 10 111 235666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
++.++...|++++|++.|+++++..|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 77777888888888888888877766
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-06 Score=65.47 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=84.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------CchHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN-------PSNYV 465 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 465 (547)
...+..+...+...|++++|...+++. .. ..+...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456777888999999999999999987 22 3467789999999999999999999999999987765 77899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 466 SLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.++.++...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=8.7e-06 Score=61.56 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP---SPSIWGALVSA 436 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 436 (547)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44455555666666666666666665431 224555666666667777777777776665 2233 46677777788
Q ss_pred HHHc-CCHHHHHHHHHHHHhhCCCCC
Q 044812 437 SVMH-GNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 437 ~~~~-~~~~~a~~~~~~~~~~~~~~~ 461 (547)
+... |++++|.+.++++.+..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.7e-06 Score=66.12 Aligned_cols=128 Identities=9% Similarity=-0.033 Sum_probs=73.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSI 429 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 429 (547)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|...+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444445555555544444332100011 124445555555566666665555543 00111 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEP------ENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+..+...+...|++++|.+.++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66677777788888888888888776521 1234677788888888888888888887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-06 Score=78.30 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ ....|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHHH
Confidence 3555566666777777777777776653 343321 22333333332211 123677788888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-cCCCHHHHHH
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA-SSRRWDAVAE 482 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 482 (547)
.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++.+|.++.++..|..+.. ..+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999888876 3334 56788888899999999999999999999999988888888887744 4567778888
Q ss_pred HHHHHHhCC
Q 044812 483 LRTMMKDRG 491 (547)
Q Consensus 483 ~~~~m~~~~ 491 (547)
++++|....
T Consensus 321 ~~~~~l~~~ 329 (338)
T 2if4_A 321 MYKGIFKGK 329 (338)
T ss_dssp ---------
T ss_pred HHHHhhCCC
Confidence 888876543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.22 E-value=9.8e-06 Score=76.43 Aligned_cols=90 Identities=8% Similarity=-0.016 Sum_probs=79.8
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|++++++.|.++..+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5678888999999999999999999887 4555 5678999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHH
Q 044812 472 ASSRRWDAVAEL 483 (547)
Q Consensus 472 ~~~g~~~~A~~~ 483 (547)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-05 Score=73.28 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--------------IITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 391 (547)
.+..+...|.+.|++++|...|++..+...... ...+..+..++.+.|++++|+..+++..+..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-- 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 445555555556666666666665555321111 3667777777788888888888888777542
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 044812 392 KPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ-DLAYKSLIQ 455 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 455 (547)
+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|+.++| ...++++.+
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677777788888888888888888776 3334 456777788888888888777 345565543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00052 Score=62.61 Aligned_cols=165 Identities=13% Similarity=0.031 Sum_probs=83.7
Q ss_pred ChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 323 DAITWSSIVSGYGLHG--KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL-INEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 323 ~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+..+|+.-...+...+ .+++++.++.++.+... -|...++.-.-.+...|. ++++++.+..+++.. +-|...|+
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~ 183 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWH 183 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 4444444444444444 25555555555555421 134444443333444444 355555555555431 22444444
Q ss_pred HHHHHhHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q 044812 400 CVVDMLGRA--------------GQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH-----------GNSEMQDLAYKS 452 (547)
Q Consensus 400 ~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~ 452 (547)
.....+.+. +.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.+++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 443333332 3355666666554 2223 445555444444333 346777888888
Q ss_pred HHhhCCCCCchHHHHHHH---HHcCCCHHHHHHHHHHHHhC
Q 044812 453 LIQLEPENPSNYVSLSNL---YASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 453 ~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~ 490 (547)
+++..|++...+..++.. ....|..+++...+.++.+.
T Consensus 264 lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 264 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 888888764433333222 22356677777777777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00046 Score=62.98 Aligned_cols=231 Identities=12% Similarity=0.069 Sum_probs=153.5
Q ss_pred HHCCCHH-HHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCC----------chhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 232 VQNGDLD-EALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIG----------LSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 232 ~~~~~~~-~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
.+.|.++ +|+.++..+ .. +.|+..| |+.--..+...+. ++++..+++.+.... +-+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~-L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQI-LG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHH-HT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHH-HH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3556554 788888877 44 4554433 3333222322222 567777888877765 55677777777
Q ss_pred HHHHhcC--CHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-
Q 044812 300 DMYSKCG--SLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGK-GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS- 372 (547)
Q Consensus 300 ~~~~~~g--~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~- 372 (547)
-++...| .+++++.+++.+ . +.|..+|+.-.-.+...|. ++++++.+.++++..+. |...++.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 7777777 488888888763 3 5677788877777777787 58999999999886432 555555544443332
Q ss_pred -------------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc-----------CCHHHHHHHHHhC-CCCCCH
Q 044812 373 -------------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA-----------GQLDRALDFIKTM-PVEPSP 427 (547)
Q Consensus 373 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~ 427 (547)
+.++++++.+....... +-|...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 45788999998888652 33677777555555544 4578888888887 455654
Q ss_pred HHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 428 SIWGALVSAS-----VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 428 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
.|..+..+. ...|..+++...+.++.+++|....-|..+...+
T Consensus 272 -~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp -HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 343322222 2467888999999999999998887787776554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-06 Score=73.06 Aligned_cols=96 Identities=7% Similarity=-0.135 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-S----------------PSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
...+..+...+...|++++|...|++. ...| + ...|..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555566666666777766666654 1111 1 368888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=72.80 Aligned_cols=113 Identities=10% Similarity=-0.092 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044812 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVS 435 (547)
Q Consensus 358 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 435 (547)
+...+..+...+...|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46678888889999999999999999998752 337788899999999999999999999986 4555 5668899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
++...|++++|+..|+++.+.+|.++..+...+....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999998877655554444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=62.12 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=62.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH 440 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 440 (547)
..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344455666777777777777776541 225666667777777777777777777765 3334 455777777788888
Q ss_pred CCHHHHHHHHHHHHhhCCCCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|++++|+..++++++.+|.++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888887777543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.6e-06 Score=66.51 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-chHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP-SNYVSLSNL 470 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 470 (547)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888889999999999999999886 3344 567899999999999999999999999999999887 445455444
Q ss_pred H
Q 044812 471 Y 471 (547)
Q Consensus 471 ~ 471 (547)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-06 Score=65.20 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=67.6
Q ss_pred cCcHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYR--IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
.|++++|+..|++..+. + -+.+...+..+...|...|++++|...|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888877643 1 1224567778888888888888888888876 3334 4668888888999999999999
Q ss_pred HHHHHHHhhCCCCCchHH
Q 044812 448 LAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (547)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999998888765543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-05 Score=75.89 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHhcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+.+.|++++|.+.|++ +.. +.+...|..+..+|.+.|++++|...+++..+.. +-+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555543 111 2234445555555555555555555555555431 11344444555555555555555
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHH--hHhcCCHHHHHHHHH
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDM--LGRAGQLDRALDFIK 419 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 419 (547)
.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555554331 1122233333333 444455555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.2e-06 Score=79.83 Aligned_cols=124 Identities=10% Similarity=0.072 Sum_probs=98.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcC--CC---C-chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYR--IK---P-TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPSP-SIWG 431 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 431 (547)
.+...|++++|+.++++..+... +. | ...+++.|...|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999988887765421 11 2 3567888999999999999999988775 244554 4899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCch---HHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQL-----EPENPSN---YVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.|...|...|++++|+.++++++++ +|++|.+ ...+..++...|++++|..++.++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 6766554 4577888889999999999999998754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=8e-05 Score=72.14 Aligned_cols=61 Identities=7% Similarity=-0.048 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--C--CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCL--G--SKPD-IITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
++..+...|...|++++|..++++.... + -+|. ...+..++..|...|++++|..++++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444555555555555555555544322 1 1111 2344445555555555555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=64.57 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----chh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PD----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTE 396 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 396 (547)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555566666666666666655442100 11 13555566666677777777777766544211111 134
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-------PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
.+..+...+...|++++|...+++. +..+ ...++..+...+...|++++|.+.++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666677777777777777777655 1111 13467778888888999999999998887753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=63.50 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=72.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----------chhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-------C
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKP----------TTEICACVVDMLGRAGQLDRALDFIKTM-PV-------E 424 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~ 424 (547)
......+...|++++|+..|++.++-..-.| +...|..+..++.+.|++++|+..+++. .+ .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3334444555555555555555543311100 1226777777777777777777776655 33 7
Q ss_pred CCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 425 PSPS-IW----GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 425 p~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
|+.. .| .....++...|++++|+..|++++++.|.+......+..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7654 78 8999999999999999999999999999887766555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-05 Score=57.69 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999999999999999999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-06 Score=65.87 Aligned_cols=92 Identities=10% Similarity=-0.011 Sum_probs=70.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYV 465 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 465 (547)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556667777788888888888888776 2233 56788888999999999999999999999999887 66777
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 044812 466 SLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~ 485 (547)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777666655444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-05 Score=72.60 Aligned_cols=151 Identities=16% Similarity=0.100 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 370 (547)
...+..+...+.+.|++++|...|++ +...|+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888889999999999999987 333444331 223333444433221 136778888899
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCCHHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-SIWGALVSA-SVMHGNSEMQD 447 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a~ 447 (547)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++. ...|+. ..+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988652 336788889999999999999999999987 455643 355555554 33456778888
Q ss_pred HHHHHHHhhCCCCC
Q 044812 448 LAYKSLIQLEPENP 461 (547)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (547)
..|+++.+..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999988887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00049 Score=68.66 Aligned_cols=169 Identities=10% Similarity=-0.018 Sum_probs=129.9
Q ss_pred HHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--
Q 044812 308 LDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGK----------GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG-- 373 (547)
Q Consensus 308 ~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-- 373 (547)
.++|++.++++ .+.| +...|+.--..+...|+ +++++..++++.+...+ +...|..-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 45667777652 2234 44557666666666666 88999999999886422 5677777666777778
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------
Q 044812 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG-QLDRALDFIKTM-PVEP-SPSIWGALVSASVMH---------- 440 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 440 (547)
+++++.+.++++.+.. +-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999998762 337788888777888888 899999999887 4445 677888888877763
Q ss_pred ----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 441 ----GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 441 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
+.++++++.+++++..+|.+..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988555
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4.2e-05 Score=55.24 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=61.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777777777888777777765 2223 56677888888888888888888888888888888888888888776
Q ss_pred cCC
Q 044812 473 SSR 475 (547)
Q Consensus 473 ~~g 475 (547)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.88 E-value=8.8e-05 Score=69.87 Aligned_cols=114 Identities=8% Similarity=0.049 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP-SPSIWGALVSAS 437 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 437 (547)
...+..+...+.+.|++++|+..|++..+.. +... .....+++. ...| +..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888776531 1100 000111111 1223 356888999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.+.|++++|+..++++++.+|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999987643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.7e-05 Score=56.82 Aligned_cols=77 Identities=6% Similarity=0.003 Sum_probs=61.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 414 ALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 414 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
|+..|++. ...| +...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555544 3334 56688888888888999999999999999988888888889999999999999999998887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=53.08 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 424 EPSPSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 424 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
.+++..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567788888888876665 799999999999999999999999999999999999999999999887653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=71.51 Aligned_cols=116 Identities=7% Similarity=-0.042 Sum_probs=95.3
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----------------PSIWGALV 434 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~ 434 (547)
+++++|...|+...+. .| ....+..+...|.+.|++++|...|++. ...|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444555555443322 22 4567788889999999999999999987 22232 57899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...|++..+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999988754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00022 Score=56.30 Aligned_cols=111 Identities=7% Similarity=-0.029 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 044812 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLA 449 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 449 (547)
++++|.+.|++..+. + .|. .. |...|...+.+++|.++|++.-...+...+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455566666655443 2 122 12 455555555566666666655223455566666666665 6677777777
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHc----CCCHHHHHHHHHHHHhCCC
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYAS----SRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 492 (547)
|+++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77776653 45567777777776 6777777777777766654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=55.19 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
++...|..+...+...|++++|++.++++++..|.++..+..++.++.+.|++++|++.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788899999999999999999999999999999999999999999999999999999988654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00016 Score=70.40 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=80.9
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCC---CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc----CC-CC-chhHHHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCL---GSK---PD-IITIVGVLSACGRSGLINEGLEIYNSVINTY----RI-KP-TTEICAC 400 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~---g~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~-~~~~~~~ 400 (547)
+...|++++|..++++.++. -+. |+ ..+++.|..+|...|++++|+.++++..+.+ |- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665443 111 22 3566777777777777777777777654421 11 22 3456777
Q ss_pred HHHHhHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 401 VVDMLGRAGQLDRALDFIKTM---------PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
|...|...|++++|+.++++. +..|+.. +...+..++...+.+++|+.++.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877765 2334433 5566777788888899999999888763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=3e-05 Score=61.77 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC
Q 044812 407 RAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGN----------SEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (547)
+.+.+++|...+++. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..++.+|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344556666666554 2233 45566666666665554 57999999999999999999999999999987
Q ss_pred C-----------CHHHHHHHHHHHHhCC
Q 044812 475 R-----------RWDAVAELRTMMKDRG 491 (547)
Q Consensus 475 g-----------~~~~A~~~~~~m~~~~ 491 (547)
| ++++|++.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00029 Score=50.60 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888999999999999999999999999999999999999999999999999999998764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0007 Score=53.23 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 425 PSPSIWGALVSASVMHG---NSEMQDLAYKSLIQLE-P-ENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++..+...+..++++.+ +.++++.+++.+.+.+ | .+...+..|+.+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555666666655 4456666666666665 4 3455666666666666666666666666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0003 Score=67.34 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=80.3
Q ss_pred HHHhHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCC---ch
Q 044812 402 VDMLGRAGQLDRALDFIKTM---------PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQL-----EPENP---SN 463 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~ 463 (547)
+..+.+.|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|.+| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777654 11232 347888888888889999999888888764 34443 36
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 044812 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535 (547)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (547)
++.|+.+|...|++++|..++++..+--.. .....||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778888999999999999988887542110 112268888888888877776665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=7.9e-05 Score=59.31 Aligned_cols=110 Identities=11% Similarity=0.100 Sum_probs=63.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 044812 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ----------LDRALDFIKTM-PVEP-SPSIWGALVSASVMH 440 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 440 (547)
+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34455555555554431 2244555555555554443 34666666665 3444 345677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 441 -----------GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|++++|++.|+++++++|.+.. |...+. ..++|.++.-.+...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~-y~~al~------~~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH-YLKSLE------MTAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHH------HHHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH-HHHHHH------HHHhCHhccCcccccc
Confidence 5899999999999999998743 222222 2344555555555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0024 Score=50.29 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=90.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLD 412 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 412 (547)
.+++++|..+|++..+.| .|+.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346788999999998887 34433 666777778888899999988764 356777778888887 78999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 044812 413 RALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 413 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 458 (547)
+|..+|++.-...+...+..|...|.. .++.++|.+.|+++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987434677888889999988 8999999999999988763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.47 E-value=8.8e-06 Score=75.78 Aligned_cols=236 Identities=12% Similarity=0.145 Sum_probs=138.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044812 88 LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167 (547)
Q Consensus 88 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 167 (547)
.|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-..++....+..- +..+=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 4555666666666666655544221 1455566666666666666666666655544322 2233345666666
Q ss_pred hcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC------------------------CCChhh
Q 044812 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK------------------------RRNVYA 223 (547)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~------------------------~~~~~~ 223 (547)
+.++..+-.+++. .+|......+.+-|...|.++. |.-+|..+. ..++.+
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeA---AKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDA---AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTT---SSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHH---HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 6666544332221 2444444455555555555555 333333332 136778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
|-.+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++...+++.-.... ......|+.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 8888889998888887765544441 2222 12345667888888888888887665322 456778888888888
Q ss_pred hcCCHHHHHHHHh----cCCCCC------ChhhHHHHHHHHHhcCChHHHHH
Q 044812 304 KCGSLDCARRVFE----DSSFNK------DAITWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 304 ~~g~~~~A~~~~~----~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 345 (547)
+- ++++..+.++ +++++. ....|.-++-.|+.-.+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 4455555444 344221 34458888888888888887753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00052 Score=52.07 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
.|...|++..+.. +.+...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666665421 235666777777777777777777777765 2233 45677788888888888888888888888
Q ss_pred hhCCC
Q 044812 455 QLEPE 459 (547)
Q Consensus 455 ~~~~~ 459 (547)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0024 Score=63.74 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=120.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc----------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGL----------INEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
....++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-...+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34457889999999985 554 4455554445555555 899999999998763 34777888888888
Q ss_pred HhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC------
Q 044812 406 GRAG--QLDRALDFIKTM-PVE-PSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS------ 474 (547)
Q Consensus 406 ~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 474 (547)
.+.| +++++++.++++ ... -+...|+.-..++...| ..+++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999998 333 47779999888889999 899999999999999999999999999988774
Q ss_pred --------CCHHHHHHHHHHHHhCC
Q 044812 475 --------RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 475 --------g~~~~A~~~~~~m~~~~ 491 (547)
+.++++.+.+++.....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988876543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0073 Score=55.38 Aligned_cols=138 Identities=15% Similarity=0.060 Sum_probs=74.9
Q ss_pred CCChhhHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----cC----cHHHHHHHHHHHH
Q 044812 321 NKDAITWSSIVSGYG--LHG---KGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGR----SG----LINEGLEIYNSVI 386 (547)
Q Consensus 321 ~~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~----~g----~~~~a~~~~~~~~ 386 (547)
+.+...|...+++.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 456667777776543 333 347888999998885 565 3444444333320 00 0111111111111
Q ss_pred HhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11112335556666655555567777777776665 334666566666666666777777777777777776644
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00027 Score=67.54 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCC---chHHHHHH
Q 044812 408 AGQLDRALDFIKTM---------PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQL-----EPENP---SNYVSLSN 469 (547)
Q Consensus 408 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~ 469 (547)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|++| .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46667777666554 223443 47788888888888888888888888764 34443 36778888
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 044812 470 LYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 470 ~~~~~g~~~~A~~~~~~m~~ 489 (547)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00088 Score=64.02 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=73.3
Q ss_pred ccCcHHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 044812 371 RSGLINEGLEIYNSVINTY--RIKP----TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPSPS-IWGALV 434 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~ 434 (547)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899998888776532 1222 2467888999999999999999998876 2456554 899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCCchHH
Q 044812 435 SASVMHGNSEMQDLAYKSLIQL-----EPENPSNYV 465 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 465 (547)
..|...|++++|+.++++++++ +|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999874 677765443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0027 Score=60.78 Aligned_cols=101 Identities=11% Similarity=0.057 Sum_probs=77.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcC--CCC----chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYR--IKP----TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPSP-SI 429 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 429 (547)
+..+...|++++|+.++++..+... +.| ...+++.++..|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445677899999999988865321 122 2467888999999999999999998876 244554 48
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCchHHH
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQL-----EPENPSNYVS 466 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 466 (547)
++.|...|...|++++|+.++++++++ +|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 899999999999999999999999874 6777665443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.033 Score=42.04 Aligned_cols=140 Identities=10% Similarity=0.012 Sum_probs=97.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+-+ |. ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHHH
Confidence 3456777777777776653 245555655544444444455555555553322 21 234555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
..-+-.+. .+....+..+..+...|+.+.-.+++..++...+++|.....++.+|.+.|+..+|.+++++..++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555553 355566777888899999999999999987788889999999999999999999999999999999985
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.001 Score=48.64 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=39.1
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
...+.+.|++++|...+++. ...| +.. .|..+..++...|++++|+..|+++++.+|.++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44555666677776666665 2223 345 566666666666777777777777766666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0026 Score=46.45 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTE-ICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
..+...|++++|...|+++.+.. +.+.. .+..+..+|...|++++|...|++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455566666666666655431 12344 5555556666666666666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0027 Score=46.56 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555556666666666666666655542 11344555555566666666666666665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.05 Score=57.22 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..+...+.+.|+++.|.+.|..+ .. |..+...+...++.+....+-+.....| -++...
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~ 743 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAF 743 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHH
Confidence 4456777777777788888888877776 22 3333333444444444444433333333 123333
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
.+|.+.|++++|.+++.+.+
T Consensus 744 ~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 744 NAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHcC
Confidence 34444555555555554444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.005 Score=54.02 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=73.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHcC-CCHHH
Q 044812 411 LDRALDFIKTM-PVEPS---PSIWGALVSASVMH-----GNSEMQDLAYKSLIQLEPEN-PSNYVSLSNLYASS-RRWDA 479 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 479 (547)
...|...+++. .+.|+ ...|..|+..|... |+.++|.++|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46677777765 45666 56888899889884 99999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 044812 480 VAELRTMMKDRGLKKSPG 497 (547)
Q Consensus 480 A~~~~~~m~~~~~~~~~~ 497 (547)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887765453
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0086 Score=44.24 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=54.3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-----P----VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
+..-+..|...+.+.|++..|..+|+.. + ..+...++..|..++.+.|+++.|...++++.+..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344445666666667777666666654 0 123456888999999999999999999999999999987765
Q ss_pred HHHH
Q 044812 465 VSLS 468 (547)
Q Consensus 465 ~~l~ 468 (547)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0021 Score=60.22 Aligned_cols=142 Identities=8% Similarity=0.053 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHcc
Q 044812 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133 (547)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 133 (547)
.+.+|..|..+..+.+++.+|++.|=+... +..|..++....+.|.+++-+..+.-.++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~D--ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADD--PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSC--CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCC--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 577899999999999999999887765554 45688889999999999999998877776533 44444578889999
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC------------------------CChhh
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ------------------------RNVGS 189 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 189 (547)
.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 98877655443 235655566677777888888888777766642 46778
Q ss_pred HHHHHHHHHcCCCchhH
Q 044812 190 WNVRISGHASSGDFSLV 206 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a 206 (547)
|..+-.+|...+.+..|
T Consensus 202 WKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLA 218 (624)
T ss_dssp HHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHhCchHHHHH
Confidence 99999999998888775
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.014 Score=44.05 Aligned_cols=65 Identities=9% Similarity=-0.068 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 425 PSPSIWGALVSASVMHGNSEM---QDLAYKSLIQLE-P-ENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445554444333 555555554443 2 2333445555556666666666666555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.033 Score=51.13 Aligned_cols=134 Identities=18% Similarity=0.140 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHh---cC-----C---HHHHHHH
Q 044812 355 SKPDIITIVGVLSACG--R---SGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGR---AG-----Q---LDRALDF 417 (547)
Q Consensus 355 ~~p~~~~~~~l~~~~~--~---~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 417 (547)
.+.+...|...+++.. . .....+|..+|++..+. .|+ ...|..+..+|.. .+ . ...+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777766533 2 23468899999999865 564 3444444333321 11 1 1222332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 418 IKTMP-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 418 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
...+. ...+..+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++....+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22332 235677888888888888999999999999999996 566778999999999999999999998876653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.012 Score=46.19 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG---QLDRALDFIKTM-PVE-P--SPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
...+.+.|.+..+. + .++..+...+..++++.+ +.+++..+|++. ... | +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555443 2 256666666677777766 555777777665 222 4 2445666778889999999999
Q ss_pred HHHHHHHhhCCCCCchHH
Q 044812 448 LAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (547)
+.++++++.+|.+..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999998865443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.16 Score=39.01 Aligned_cols=91 Identities=1% Similarity=-0.115 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccc
Q 044812 424 EPSPSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499 (547)
Q Consensus 424 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 499 (547)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .......|+.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4566666666667776654 45677777777776664 3445667778888888888888888877653
Q ss_pred eEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 044812 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540 (547)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (547)
.|...++.++-..+.++|...|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 345566777777777778777764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.099 Score=54.93 Aligned_cols=75 Identities=8% Similarity=-0.022 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH
Q 044812 59 TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138 (547)
Q Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 138 (547)
..++..+.+.|..+.|.++.+.. ..-.......|+++.|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 55556666666666666555321 11122334556666666654433 24455666666666666666
Q ss_pred HHHHHHHHH
Q 044812 139 VGMLIHGLS 147 (547)
Q Consensus 139 ~a~~~~~~~ 147 (547)
.|++.|..+
T Consensus 699 ~A~~~y~~~ 707 (814)
T 3mkq_A 699 LAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.049 Score=39.02 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHhHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 392 KPTTEICACVVDMLGRAGQ---LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
+.++..+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3466667777777654444 68888888876 3445 456777888888999999999999999999888743
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.049 Score=40.02 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE-------PENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+..-...++..+...|++..|...|+.+++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678999999999999999999998752 234567899999999999999999999998764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.41 Score=38.59 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044812 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 380 (547)
.....|+++.|.++.+++. +...|..|.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-..
T Consensus 14 LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445566666666665543 455666666666666666666666665432 2222223333455444443
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC
Q 044812 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422 (547)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (547)
+-+....+ | -++.-...+.-.|+++++.++|.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 33322221 1 12333344445666666666666654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=2.4 Score=42.27 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 339 KGHEAVLLYNKMVCLG-SKPDI--ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
+.+.|...|......+ +.+.. .....+.......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6778888887775443 22221 12223333344445345555555554332 233333333444445678888888
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 416 DFIKTMPVEP--SPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 416 ~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
..|+.|+..+ ...-.--+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888885332 233333455677778888888888888764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.15 Score=38.51 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR---ALDFIKTM-PVE-P--SPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
+..+.+-|...... +. ++..+--.+..++.+..+..+ ++.++++. ... | .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555443 32 566666667777777776655 77777765 222 3 2234556777899999999999
Q ss_pred HHHHHHHhhCCCCCchHHH
Q 044812 448 LAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (547)
+.++.+++.+|.|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999998765543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.14 Score=38.82 Aligned_cols=89 Identities=1% Similarity=-0.116 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccc
Q 044812 424 EPSPSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499 (547)
Q Consensus 424 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 499 (547)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. ....+..|+.++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--------- 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------
Confidence 4555555556666666554 45677777777776663 3456777788888888888888888877642
Q ss_pred eEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcC
Q 044812 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538 (547)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (547)
.|+..++.++-..+.++|.+.|
T Consensus 108 -----------------eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 108 -----------------ERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhhc
Confidence 3455666666666666666544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.86 Score=36.74 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..|.......|+++-|.+.|... .. +..+.-.|...|+.+....+-+.....| -++...
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af 96 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQ-HS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSML 96 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT-TC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHh-CC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHH
Confidence 4556777888888888888888888776 32 4444445555666666655555555444 245555
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
..+.-.|+++++.++|.+.+
T Consensus 97 ~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHCC
Confidence 56667788888888887776
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.73 E-value=4.8 Score=42.00 Aligned_cols=251 Identities=8% Similarity=-0.065 Sum_probs=112.8
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChH--HHHhHHHHhhccCCchhHHHHHHHHHHcCC-------CCchhHHHHHH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKV--SLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-------NHDVSLCNALI 299 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~ 299 (547)
-+....|+.++++.+++.. ...+...+.. .-..+.-+....|..+.+..++.......- .+....-.++.
T Consensus 382 LGlIh~g~~~~gl~~L~~y-L~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPY-LPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTT-STTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3456677888887777665 2211012222 222233334444444556666665554321 01111122222
Q ss_pred HH--HHhcCCHHHHHHHHhc-CCCCCChhh--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHh
Q 044812 300 DM--YSKCGSLDCARRVFED-SSFNKDAIT--WS--SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV--GVLSACG 370 (547)
Q Consensus 300 ~~--~~~~g~~~~A~~~~~~-~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~ 370 (547)
-+ |.-.++- ++.+.+.. +. ..+... .. +|...+.-.|+.+....++..+.+. .+..... .+.-++.
T Consensus 461 LGla~~GS~~e-ev~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSANI-EVYEALKEVLY-NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCCH-HHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCH-HHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh
Confidence 22 2233443 33333322 22 222211 11 2223344556666666666666553 1222322 2333344
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHH--HHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS--ASVMHGNSEMQ 446 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a 446 (547)
..|+.+.+..+.+.+.... .|....-. ++.-+|+-.|+.....+++..+...++..+-...+- ++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHH
Confidence 6677777777777665431 23222222 334456677777666667776632333332222222 33345665555
Q ss_pred HHHHHHHHhhCCCCCchHH--HHHHHHHcCCC-HHHHHHHHHHHHh
Q 044812 447 DLAYKSLIQLEPENPSNYV--SLSNLYASSRR-WDAVAELRTMMKD 489 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~-~~~A~~~~~~m~~ 489 (547)
.++++.+.+.. ++.+-. .++-+....|+ ..+|++++..+..
T Consensus 614 ~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 55555444322 222222 22222233333 2567777777753
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.07 Score=46.89 Aligned_cols=81 Identities=12% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHc-CCH
Q 044812 376 NEGLEIYNSVINTYRIKPT---TEICACVVDMLGR-----AGQLDRALDFIKTM-PVEPS--PSIWGALVSASVMH-GNS 443 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-~~~ 443 (547)
..|...+++..+- .|+ ...|..+...|.+ -|+.++|.+.|++. .+.|+ ..++......++.. |+.
T Consensus 180 ~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4444445554432 343 4455556665655 36666666666665 33442 45555566666553 667
Q ss_pred HHHHHHHHHHHhhCCC
Q 044812 444 EMQDLAYKSLIQLEPE 459 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~ 459 (547)
+.+.+.++++++..|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.2 Score=51.02 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=50.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..-|...|+++.|+++-+++....|.+-.+|..|+.+|...|+|+.|.-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788999999999999999999999999999999999999999999999884
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=1.3 Score=33.51 Aligned_cols=65 Identities=17% Similarity=0.033 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
...+..+..+...|.-++-.+++..+ .. +.+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~-l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREI-LK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-C---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHH-hc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34566678888899999999999884 22 4677888888888999999999999999888888875
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.27 Score=38.09 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+|+++|.++|+.+++....-...|...+..-.+.|+.+.|.+++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 455555555555555433334444555555555566666666555554433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.14 Score=48.15 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH-----hCCCccCCcc
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK-----DRGLKKSPGC 498 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 498 (547)
....++.++...|++.++...++.+...+|-+...|..++.+|.+.|+..+|.+.|++.. +.|+.|.+.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345567778899999999999999999999999999999999999999999999999874 3599888865
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.86 E-value=6.9 Score=40.87 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=53.4
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHH--HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVS--LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (547)
.-++...|+.+.+..+++.+ ... ..|.... ...+.-+|+..|+.....+++..+.+.. ..++.....+.-++...
T Consensus 531 gLGll~~g~~e~~~~li~~L-~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 531 GLALINYGRQELADDLITKM-LAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHH-HHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCChHHHHHHHHHH-HhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 33444566666666666665 321 1121111 1223345666666666666666665432 12222222222233334
Q ss_pred CCHHHHHHHHhcCCCCCChhh--HHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 044812 306 GSLDCARRVFEDSSFNKDAIT--WSSIVSGYGLHGKG-HEAVLLYNKMVC 352 (547)
Q Consensus 306 g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~~~~-~~a~~~~~~m~~ 352 (547)
|+.+.+.++++.+.-..|... -..+.-+....|.. .++.+++..+..
T Consensus 608 g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 554555555543211222222 22222333333332 456666666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.99 Score=35.01 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 409 GQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 409 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
++.++|.++|+.+ . .+.=...|.....--.+.|+...|.+++.+++...|.+...+...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 4555555555544 0 01115566666666677888888888888888877766555544443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.93 E-value=6.7 Score=37.45 Aligned_cols=256 Identities=8% Similarity=0.035 Sum_probs=126.0
Q ss_pred cCchHHHHHHHHHHHh-----CCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHH----HHhcCC
Q 044812 34 RSLKLTKQSHSQILSL-----GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV---YLYNSLING----YVKNHG 101 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~----~~~~~~ 101 (547)
+++..|.+.+-.+.+. +..-+......++..|...|+++...+.+..+..... ..-..++.. +.....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5666665555444432 2344567788899999999999988776655433211 112222222 222222
Q ss_pred hhH--HHHHHHHhhhCCCCCCc--------chHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHH
Q 044812 102 HNE--ALELFSNMYYSNVSPDD--------FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-----VILANSLMSMY 166 (547)
Q Consensus 102 ~~~--A~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~ 166 (547)
.+. -..+.+... .+.... .....|...+...|++.+|..++..+...-...+ ...+...++.|
T Consensus 110 ~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221 111221111 111110 1123355556666666666666666543211111 23444555666
Q ss_pred HhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCC--hhhHHHHHHHHHHCCCHHHHHHHH
Q 044812 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN--VYAWTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~ 244 (547)
...+++..|..+++++. ...+.....|+ ...|...+..+...+++.+|.+.|
T Consensus 188 l~~~d~~~a~~~~~ki~--------------------------~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL--------------------------KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHTCHHHHHHHHHHHH--------------------------HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH--------------------------HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666666555431 11222222222 245667778888889999988888
Q ss_pred HHchhcCCCCCChHHHH----hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhc
Q 044812 245 LEMQLKDRIEPNKVSLV----SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC--GSLDCARRVFED 317 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 317 (547)
.+.........|...+. .++.+..-.+....-..+.........-++...+..++.+|... .+++...+.|..
T Consensus 242 ~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 242 QEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 77733222222322221 11111111111122222333333333235667788888888764 467777777764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.63 Score=36.87 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=23.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+.-..++.+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 456779999999999999999988653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.19 E-value=6.2 Score=35.31 Aligned_cols=166 Identities=13% Similarity=0.050 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHH----HHHhhhCCCCCCcchHHHHHHHHc
Q 044812 57 VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL----FSNMYYSNVSPDDFTLATISKLSG 132 (547)
Q Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 132 (547)
.|.++..-|.+++++++|++++.. -...+.+.|+...|-++ .+...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778888899999886543 23345667777666554 455556688888888888887776
Q ss_pred cCCCc-----HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcC---CC
Q 044812 133 EIKDL-----NVGMLIHGLSIKIGF--VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS---GD 202 (547)
Q Consensus 133 ~~~~~-----~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 202 (547)
....- .-..+...+..+.|- ..++.....+...|.+.|++.+|..-|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 64321 222333334444432 246778888999999999999999877633222455555555444443 43
Q ss_pred chhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 203 ~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..+ .+...-.+ +-.|.-.|+...|..+|+..
T Consensus 184 ~~e-------------~dlf~~Ra-VL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 184 DST-------------VAEFFSRL-VFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHH-------------HHHHHHHH-HHHHHHTTBHHHHHHHHHHH
T ss_pred cch-------------HHHHHHHH-HHHHHHhcCHHHHHHHHHHH
Confidence 222 12222222 23345677777777777765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.93 E-value=6.9 Score=35.29 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHH----HHhhhCCCCCCcchHHHHHHHHc
Q 044812 57 VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF----SNMYYSNVSPDDFTLATISKLSG 132 (547)
Q Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~ 132 (547)
+|.++..-|.+++++++|++++-. -...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668889999999986533 233456667776655544 55556688888888888888877
Q ss_pred cCCCcH-HHHHH----HHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchh
Q 044812 133 EIKDLN-VGMLI----HGLSIKIG--FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205 (547)
Q Consensus 133 ~~~~~~-~a~~~----~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (547)
....-+ .=..+ ..+..+.| ..-|......+...|.+.+++.+|..-|-.-.+++...+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 665422 11223 33334444 334677888889999999999999998843222233566555555554443222
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 206 a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.+...-.+ +-.|...++...|..+++..
T Consensus 186 -------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 186 -------------APLYCARA-VLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp -------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHH
T ss_pred -------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHH
Confidence 23333333 33456677888887776655
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.33 E-value=3.1 Score=45.37 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhh
Q 044812 58 STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 113 (547)
...++..+.+.+.++-|.++....+. +....-.+..++...|++++|.+.|++.-
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44566677777888888776665544 33333445667788899999999997753
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.00 E-value=10 Score=41.40 Aligned_cols=166 Identities=9% Similarity=-0.062 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc
Q 044812 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 269 (547)
...++..+...+..+. +.++..-.+ .+...--.+..+|...|++++|.+.|.+. ..|+..+......
T Consensus 815 ~~~l~~~l~~~~~~~~---~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~------- 881 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNA---CMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAV------- 881 (1139)
T ss_dssp HHHHHHHHHHHSCTTH---HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSS-------
T ss_pred HHHHHHHHHHhhhHHH---HHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhh-------
Confidence 3346667777787776 555544444 34444456788999999999999999886 3333332211000
Q ss_pred cCCchhHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCC-CCCh--hhHHHHHHHHHhcCCh
Q 044812 270 LIGLSGGKQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFED----SSF-NKDA--ITWSSIVSGYGLHGKG 340 (547)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~-~~~~--~~~~~li~~~~~~~~~ 340 (547)
..-+..+..... ..-..-|..++..+.+.|.++.+.++-+. .+- .++. ..|..+..++...|++
T Consensus 882 -------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 882 -------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp -------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred -------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 000111111111 11223466778888888888877766542 221 1211 2588889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 044812 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377 (547)
Q Consensus 341 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 377 (547)
++|...+-.+..... -...+..|+..+|..|..+.
T Consensus 955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 999999988876533 35667777777777766544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.18 E-value=2.1 Score=33.87 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh-H
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPD-------IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE-I 397 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 397 (547)
+-.-+..+...|.++.|.-+...+.... ..|+ ..++..+.+++...|++..|...|++.......-+... .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344566777888888877766654321 1233 13556667778888888888888887654332222111 1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
...+. ........ ....++...--.+..+|.+.+++++|+.+++.+-.... ++.+-..|++.|
T Consensus 103 ~~~~~----~~ss~p~s------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTG----NSASTPQS------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLANLY 165 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHHHHC
T ss_pred ccccc----ccCCCccc------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHHHHh
Confidence 11010 00000000 00112233334466677778888888777766543332 344555555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.98 E-value=3.5 Score=29.32 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=40.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 420 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
.+..-|++.+..+.+++|.+.+|+..|.++++-+...-.+...+|..++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33567999999999999999999999999999998876555566776654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.29 E-value=6.1 Score=30.36 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=50.4
Q ss_pred CCchhHHHHHHHHhHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 392 KPTTEICACVVDMLGRAGQL---DRALDFIKTM-PVEP--SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.|+..+--.+..++.+..+. .+++.++++. ...| .....-.|.-++.+.|++++|.+..+.+++.+|.|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45555555566667666644 3566666655 2223 233455677789999999999999999999999986543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.25 E-value=14 Score=33.25 Aligned_cols=123 Identities=10% Similarity=0.037 Sum_probs=66.9
Q ss_pred hcCCCCCChHHHHhHHHHhhccCCch-----hHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 044812 249 LKDRIEPNKVSLVSVLPTCSSLIGLS-----GGKQIHGFAIRKE--LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321 (547)
Q Consensus 249 ~~~~~~p~~~~~~~ll~~~~~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 321 (547)
.+.++++|......++..+.....-+ -..+...+-.+.| ..-++.....+...|.+.+++.+|...|- .+-.
T Consensus 86 ~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~ 164 (336)
T 3lpz_A 86 RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTK 164 (336)
T ss_dssp HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCT
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCC
Confidence 34455556555555555554433211 1112222333333 23467788889999999999999998885 3423
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
+....+..++.-+...+... .++...-..++. |.-.+++..|...++...+
T Consensus 165 ~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 165 ESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp THHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 33456655554444333221 122233333443 4445788888887766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.37 E-value=3.8 Score=31.03 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=46.9
Q ss_pred CCchhHHHHHHHHhHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 392 KPTTEICACVVDMLGRAGQL---DRALDFIKTM-PVEP--SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.|+..+--.+..++.+..+. .+++.++++. ...| ....+-.|.-++.+.|++++|.+..+.+++.+|.|..+-
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34555555556666666544 3456666554 2224 233555667788888888888888888888888876543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.71 E-value=3.4 Score=42.13 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=27.2
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCC
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTMP 422 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (547)
|...|+++.|+++-++.... .| +..+|..|..+|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33455555555555555432 23 45555555555555555555555555554
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.01 E-value=10 Score=31.18 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 440 HGNSEMQDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
.+....+..+|..+...+ ......|...+..+...|++++|.++++.-.+++..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344778888888887764 5456677888888888888888888888877776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.62 E-value=4.7 Score=37.68 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=22.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
..+...|+++++...+..+.... +-+...+..++.++...|+..+|.+.|+.
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444443321 22344444444444444444444444444
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=84.55 E-value=17 Score=31.66 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCchhHHHHhccCCCCCc----chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH--HHHHHHHcc
Q 044812 60 KLITAYALCGQPTQSQLVFNSIQHKDV----YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL--ATISKLSGE 133 (547)
Q Consensus 60 ~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~ 133 (547)
..+...++.|+.+....+++.-..++. .-++ .+...+..|+.+ +++.+.+.|..|+.... .+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 445556677888887777776544321 1222 334445556654 34444455554433211 122223334
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHH
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVIL--ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~ 211 (547)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-...+.... .. .
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----------~~-------~ 139 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-----------TK-------E 139 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC-----------CC-------H
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc-----------cH-------H
Confidence 44443 3344444554433211 01123334455666555555554332221000 00 0
Q ss_pred HHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC---hHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 212 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
..... +.... +.+...+..|+.+-+..+++.. |..++ ....+.+. .....++......+.+.+.+.|.
T Consensus 140 ~~~~~---~~~g~-t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 140 DQERL---RKGGA-TALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp HHHHT---TCCCC-CHHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTC
T ss_pred HHHhh---ccCCC-cHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCC
Confidence 00000 00001 1233344566666655555432 22222 11222222 23334555555667777777776
Q ss_pred CCchhH--HHHHHHHHHhcCCHHHHHHHHhcCC
Q 044812 289 NHDVSL--CNALIDMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 289 ~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 319 (547)
.++... -.+.+...++.|+.+-+..+++..+
T Consensus 211 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence 554321 1234455566777777777776444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.86 E-value=9.6 Score=27.15 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+.-+..+-++.+....+-|++......+++|-+.+++..|.++|+.+..+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446666777777777888888888888999999999999999888866533 33456766664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.97 E-value=10 Score=26.82 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|..|-. .+.|-.+++...+.++..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4566666666665553 22222333455678899999999999888 899998877755 467888888888878877
Q ss_pred cCCCCCHHHHH
Q 044812 353 LGSKPDIITIV 363 (547)
Q Consensus 353 ~g~~p~~~~~~ 363 (547)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 44444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.59 E-value=9.5 Score=28.85 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=42.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 419 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
-.+..-|++.+....+++|.+.+|+..|.++++-+..+-.+...+|..++.
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 334567999999999999999999999999999998876555667777654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.37 E-value=27 Score=31.20 Aligned_cols=141 Identities=10% Similarity=-0.003 Sum_probs=76.7
Q ss_pred HHHCCCHHHHHH----HHHHchhcCCCCCChHHHHhHHHHhhccCCc-----hhHHHHHHHHHHcCC--CCchhHHHHHH
Q 044812 231 YVQNGDLDEALV----LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL-----SGGKQIHGFAIRKEL--NHDVSLCNALI 299 (547)
Q Consensus 231 ~~~~~~~~~A~~----~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~ 299 (547)
+.+.|+...|.+ +++-. .+.+++++......++..+...... +-..+...+-.+.|- .-++..+..+.
T Consensus 63 ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 344455444433 23333 4556777776666666665443221 122233333333332 23677888999
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH---GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
..|.+.|++.+|...|- .+-..+...+..++.-+... |...++- ...-..++. |.-.|+..
T Consensus 142 ~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL~-yL~l~n~~ 205 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVFN-YLFISNIS 205 (312)
T ss_dssp HHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHHH-HHHTTBHH
T ss_pred HHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHHH-HHHhcCHH
Confidence 99999999999998886 33122344554444433333 3333321 112222333 34567888
Q ss_pred HHHHHHHHHHHh
Q 044812 377 EGLEIYNSVINT 388 (547)
Q Consensus 377 ~a~~~~~~~~~~ 388 (547)
.|..+++...+.
T Consensus 206 ~A~~~~~~f~~~ 217 (312)
T 2wpv_A 206 FAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.16 E-value=11 Score=26.68 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... -||...|..|-. .+.|-.+++...+.++..
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4566666666665553 22222333455678899999999999988 899999877755 467777888888878877
Q ss_pred cCCCCCHHHHH
Q 044812 353 LGSKPDIITIV 363 (547)
Q Consensus 353 ~g~~p~~~~~~ 363 (547)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 44444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 547 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 9/187 (4%)
Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFE--DSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
+ + L ++ + D A + S A+ ++ Y G A+ Y
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 348 NKMVCLGSKPDIITIVGVL-SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
+ + L +P L +A G + E + YN+ + + + ++
Sbjct: 261 RRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKR 316
Query: 407 RAGQLDRAL-DFIKTMPVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
G ++ A+ + K + V P + L S G + + YK I++ P Y
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Query: 465 VSLSNLY 471
++ N
Sbjct: 377 SNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.001
Identities = 27/210 (12%), Positives = 72/210 (34%), Gaps = 10/210 (4%)
Query: 155 DVILANSLMSMYVKCGKFSECLNLFD---EMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
+ ++L ++ G+ ++ F+ + + ++ + + F V +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
+ + + Y + G +D A+ + ++P+ L
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEK 284
Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS--SFNKDAITWSS 329
G + + N L ++ + G+++ A R++ + F + A S+
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344
Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
+ S GK EA++ Y + + + P
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRI--SPTF 372
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.002
Identities = 42/320 (13%), Positives = 88/320 (27%), Gaps = 18/320 (5%)
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
N + + + Q LD + + P S L G
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPLLAEAYSNLGNVYKERGQLQEAIE 88
Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
H + + L G ++ A + + + + G L
Sbjct: 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 148
Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS-GLINEGLEIYNSVINTYRIKPT-TEI 397
G + + ++P+ L + G I + + + + P +
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV---TLDPNFLDA 205
Query: 398 CACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
+ ++L A DRA+ + G L G ++ Y+ I+
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 456 LEPENPSNYVSLSNLYASS-RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT------- 507
L+P P Y +L+N +A T ++ + +I +
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 508 HCFSVADKAHPCSVSIYEML 527
+ A + P + + L
Sbjct: 326 RLYRKALEVFPEFAAAHSNL 345
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.27 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.14 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.09 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.75 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.25 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.24 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.94 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.26 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.23 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.41 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.39 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.2e-22 Score=189.71 Aligned_cols=373 Identities=14% Similarity=0.136 Sum_probs=274.1
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 173 (547)
..+.+.|++++|.+.|+++.+... -+...+..+..++...|++++|...++.+++.. +.+..++..+..+|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 344566667777776666665421 134455666666666677777777776666654 334556666666777777777
Q ss_pred HHHHHhccCCCC---ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhc
Q 044812 174 ECLNLFDEMPQR---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250 (547)
Q Consensus 174 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 250 (547)
+|...+....+. +...+..........+.................................+....+...+... ..
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA-IE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH-HH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh-hc
Confidence 777666655432 22223333333334444444333333333333445556666677777788888888887776 32
Q ss_pred CCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhH
Q 044812 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITW 327 (547)
Q Consensus 251 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~ 327 (547)
. .+.+...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...+++ .. ..+...+
T Consensus 164 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 164 T-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred c-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 1 23345667777788888899999999988888765 44667888899999999999999999976 33 4566778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
..+...+.+.|++++|...|++..+. .| +..++..+...+...|++++|.+.++..... .+.+...+..+...+.
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHH
Confidence 88889999999999999999999885 44 4678888999999999999999999988764 2557788889999999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 407 RAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
..|++++|+..|++. ...|+ ..++..+..++...|++++|+..|+++++++|.++.+|..|+.+|.+.||
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999986 55664 66889999999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.1e-20 Score=175.76 Aligned_cols=357 Identities=12% Similarity=0.070 Sum_probs=289.9
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCCc
Q 044812 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDF 203 (547)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 203 (547)
+...+.+.|++++|.+.++++++.. +-+...+..+..+|.+.|++++|...|++..+ .+..+|..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3455677899999999999998875 44678889999999999999999999998764 3456788888999999999
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHH
Q 044812 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283 (547)
Q Consensus 204 ~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 283 (547)
++|.............+...+..........+....+....... ... ..................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-LQY-NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-HHH-CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccccchhhhhHHHHHHh
Confidence 99666666666666666666767777777777777777666655 222 2334444555556666777777777777777
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 044812 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361 (547)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 361 (547)
.... +.+...+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...+.+....+ +.+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7665 445677888899999999999999999862 22 3456678999999999999999999999998864 345777
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 439 (547)
+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|.+.++.. ..+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 8888899999999999999999988642 336788899999999999999999999887 234567789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.|++++|++.++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.6e-14 Score=130.66 Aligned_cols=242 Identities=14% Similarity=0.086 Sum_probs=160.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044812 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304 (547)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (547)
.....+.+.|++++|+..|+++ .+ ..| +...|..+..++...|+++.|...+.+..+.. +-+...+..+..+|..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~a-l~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAA-VQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 4566677777788887777776 33 223 34556666666666666666666666666554 3344555556666666
Q ss_pred cCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 305 CGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 305 ~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
.|++++|.+.+++. ...|+............. ..+.......+..+...+.+.+|.+.+.
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 66666666666541 112221110000000000 0000011111222334456778888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
+..+...-.++..++..+...+...|++++|...+++. ...| +..+|..++.++...|++++|++.++++++.+|.++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 87765333446677888889999999999999999886 3344 567899999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+|..++.+|.+.|++++|++.|++..+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988663
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.2e-13 Score=121.73 Aligned_cols=268 Identities=12% Similarity=0.041 Sum_probs=191.4
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhc
Q 044812 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSS 269 (547)
Q Consensus 191 ~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~ 269 (547)
-.....+.+.|++++|....+-.-+..+.+..+|..+..++...|++++|+..|.+. .+ +.| +...+..+...+..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC-LE--LKPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh-hc--cccccccccccccccccc
Confidence 345677899999999544444444445567889999999999999999999999988 44 234 46778888899999
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 044812 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 349 (547)
.|++++|...+..+....... ........... . ..+.......+..+...+.+.+|...+.+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAY-AHLVTPAEEGA----------------G-GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTT-GGGCC--------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccch-HHHHHhhhhhh----------------h-hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 999999999999988754211 11110000000 0 01111111122233445667788888888
Q ss_pred HHHcCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-C
Q 044812 350 MVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-S 426 (547)
Q Consensus 350 m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 426 (547)
..+... .++...+..+...+...|++++|...|++..... +-+...|..+...|...|++++|.+.|++. ...| +
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 776432 2356778888888999999999999999987652 336788889999999999999999999986 4445 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-----------hHHHHHHHHHcCCCHHHHH
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS-----------NYVSLSNLYASSRRWDAVA 481 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~ 481 (547)
...|..++.+|.+.|++++|++.|+++++..|.+.. .|..+..++...|+.+.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 668999999999999999999999999998776654 3455666766667665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.7e-09 Score=98.62 Aligned_cols=265 Identities=12% Similarity=0.016 Sum_probs=189.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCC-CCC---hHHHHhHHHHhhccCCchhHHHHHHHHHHcCC--CC---chhH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRI-EPN---KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL--NH---DVSL 294 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~ 294 (547)
.......+...|++++|++++++. ..... .++ ...+..+..++...|++++|...+....+... .. ....
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~a-L~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLA-LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344567788899999999999887 33211 111 23566677888899999999999988875321 11 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc-------CCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHH
Q 044812 295 CNALIDMYSKCGSLDCARRVFED-------SSFNKD---AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS----KPDII 360 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~ 360 (547)
+..+...+...|++..+...+.+ ...... ...+..+...+...|+++.+...+........ .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 56677788889999998888764 221111 12456677788899999999999988876422 22345
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-----CHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-----TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-----SPSI 429 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~ 429 (547)
.+......+...+....+...+........-.. ....+..+...+...|++++|...+++. ...| ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 566666777888999998888877654322111 1234566677788999999999999886 2221 2446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQL------EPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+..+..++...|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677888999999999999999998753 244556788999999999999999999998754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=5.9e-09 Score=96.24 Aligned_cols=295 Identities=8% Similarity=-0.034 Sum_probs=170.7
Q ss_pred HHHccCCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCch
Q 044812 129 KLSGEIKDLNVGMLIHGLSIKIGFVVD----VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204 (547)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 204 (547)
..+...|++++|..++++.++.....+ ...+..+..+|...|++++|...|++..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--------------------- 78 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE--------------------- 78 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------
Confidence 344556666666666666555421111 2345666777888888888888877632
Q ss_pred hHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHchh---cCCCCCChHHHHhHHHHhhccCCchhHHHH
Q 044812 205 LVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDEALVLFLEMQL---KDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279 (547)
Q Consensus 205 ~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 279 (547)
++......+ ....+..+...+...|++..+...+..... ..+..+.
T Consensus 79 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~----------------------- 129 (366)
T d1hz4a_ 79 ------QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL----------------------- 129 (366)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS-----------------------
T ss_pred ------HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchh-----------------------
Confidence 222222111 233556677778888888888888876511 0001100
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-------SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
......+..+...+...|+++.+...+... +.......+..+...+...++...+...+.+...
T Consensus 130 ---------~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 200 (366)
T d1hz4a_ 130 ---------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 200 (366)
T ss_dssp ---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 001123344555666667777666666531 1011223344555666677777777776665543
Q ss_pred c----CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHHhC---
Q 044812 353 L----GSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP--TTEICACVVDMLGRAGQLDRALDFIKTM--- 421 (547)
Q Consensus 353 ~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 421 (547)
. +..+. ...+..+...+...|+++.|...++...+.....+ ....+..+...+...|++++|...+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 280 (366)
T d1hz4a_ 201 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 280 (366)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 11111 22344555567778888888888877654311111 2334556777888888888888888765
Q ss_pred ----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------CchHHHHHHHHHcCCCHHHHHH
Q 044812 422 ----PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---------PSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 422 ----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
+..|+ ..++..+..+|...|++++|.+.+++++++.+.. ......++..+...++.+++..
T Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 281 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 23343 3477788889999999999999999988764221 1223345555566666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.7e-09 Score=95.20 Aligned_cols=201 Identities=10% Similarity=-0.081 Sum_probs=120.5
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCC-CChhhHHHHHHHHHh
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFN-KDAITWSSIVSGYGL 336 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~li~~~~~ 336 (547)
++..+..++.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|+..|++. .+. .+..++..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 45555566666666666666666666654 445677778888888888888888888762 223 345567778888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC----CHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG----QLD 412 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 412 (547)
.|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .+....++ ++..+.... ..+
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 888888888888887753 223444334444445555555555554444322 22222222 222222111 122
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 413 RALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 413 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
.+...+... ...|+ ..+|..+...+...|++++|...|+++++.+|.+...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 222222111 11232 336777888888999999999999999988887754443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=2.7e-08 Score=89.62 Aligned_cols=181 Identities=9% Similarity=0.083 Sum_probs=120.2
Q ss_pred CHHHHHHHHhc-C--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 307 SLDCARRVFED-S--SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 307 ~~~~A~~~~~~-~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
..++|..+|++ . ..+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566667665 1 11334455677777777788888888888887765333234567777777777788888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHH-hHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 384 SVINTYRIKPTTEICACVVDM-LGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+.+.. +.+...|...+.. +...|+.+.|..+|+.+ . ...+...|...+..+...|+++.|..+|+++++..|.+
T Consensus 159 ~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 776532 2233444433332 23457788888888776 2 22346677888888888888888888888888776544
Q ss_pred Cc----hHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 461 PS----NYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 461 ~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+. .|...+..-...|+.+.+.++.+++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 567777777777888888888887754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=5.3e-08 Score=87.66 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=150.0
Q ss_pred CCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC--hhhHHHHHHHHHhcCChHHHHHHH
Q 044812 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD--AITWSSIVSGYGLHGKGHEAVLLY 347 (547)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~ 347 (547)
+..+.+..++++..+...+.+...+...+..+.+.|+++.|..+|++ +...|. ...|...+..+.+.|+.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888999888766566777888889999999999999999987 343443 346889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----C
Q 044812 348 NKMVCLGSKPDIITIVGVLS-ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----P 422 (547)
Q Consensus 348 ~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 422 (547)
.++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.+ +.+...+...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999887433 3333433333 2445689999999999998763 446788999999999999999999999986 2
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 423 VEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 423 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
..|+ ...|...+..-...|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 3442 458898888888999999999999999998876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=5.8e-09 Score=94.21 Aligned_cols=223 Identities=9% Similarity=0.042 Sum_probs=130.8
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcC-CC-CCChhhHHHHHHHHH
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-SLDCARRVFEDS-SF-NKDAITWSSIVSGYG 335 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~ 335 (547)
.|+.+...+.+.+.+++|...++.+++.+ |-+...|+....++...| ++++|+..+++. .+ +.+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45555556666677777777777777765 445556666666666655 467777777652 22 334556777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCC----
Q 044812 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQ---- 410 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~---- 410 (547)
+.|++++|+..++++.+.. +-+...|..+...+...|++++|++.++++.+. .| +...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchh
Confidence 7777777777777777642 224666777777777777777777777777654 33 45556555555444443
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--chHHHHHHHHHcC--CCHHHHHH
Q 044812 411 --LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP--SNYVSLSNLYASS--RRWDAVAE 482 (547)
Q Consensus 411 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~--g~~~~A~~ 482 (547)
+++|++.+.+. ...| +...|..+...+.. ...+++.+.++.+.+..|... ..+..++.+|... +..+.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45666666554 2333 44555555544333 334566666666666655433 2334445554332 44444555
Q ss_pred HHHHH
Q 044812 483 LRTMM 487 (547)
Q Consensus 483 ~~~~m 487 (547)
.+++.
T Consensus 279 ~~~ka 283 (315)
T d2h6fa1 279 ILNKA 283 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.2e-09 Score=94.44 Aligned_cols=195 Identities=11% Similarity=-0.012 Sum_probs=137.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSA 368 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 368 (547)
..++..+..+|.+.|++++|+..|++ +.+ +.++.+|+.+..+|.+.|++++|...|++..+. .| +..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 34677788999999999999999987 333 446778999999999999999999999999986 44 46678888999
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----HcCCH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASV----MHGNS 443 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~----~~~~~ 443 (547)
+...|++++|...|+...+.. +.+......+..++.+.+..+.+..+.... ...+....+. ++..+. ..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHH
Confidence 999999999999999998752 224444444445555566555554444433 1112222222 122221 12223
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+.+...+.......|....+|..++.+|...|++++|.+.+++.....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 444444444444556666788899999999999999999999987654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.5e-08 Score=91.49 Aligned_cols=209 Identities=9% Similarity=0.028 Sum_probs=148.7
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhhccC-CchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCSSLI-GLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
...|+.+...+.+.+.+++|+.+++++ .+ +.|+. ..|+....++...| ++++|...++...+.. +-+..+|..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~a-i~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~ 118 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDA-IE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH-HH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHH
Confidence 456777778888899999999999988 45 45644 45677777777766 4799999999988876 5577888888
Q ss_pred HHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---
Q 044812 299 IDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG--- 373 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--- 373 (547)
..++.+.|++++|+..+++. .. +.+...|..+...+...|++++|+..++++++... -+...|+.+...+.+.+
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccc
Confidence 99999999999999999862 22 45677899999999999999999999999988632 25666766655544443
Q ss_pred ---cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 044812 374 ---LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEPSPSIWGALVSAS 437 (547)
Q Consensus 374 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 437 (547)
.+++|.+.+....+.. +.+...|..+...+...| .+++.+.++.. +...+...+..+...|
T Consensus 198 ~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 3678888888887652 336667776666554433 45555555544 2223455555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=2.1e-09 Score=98.55 Aligned_cols=231 Identities=7% Similarity=-0.079 Sum_probs=163.5
Q ss_pred HHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccC--CchhHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCC
Q 044812 232 VQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLI--GLSGGKQIHGFAIRKELNHDVSLC-NALIDMYSKCGS 307 (547)
Q Consensus 232 ~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 307 (547)
...|++++|+.+++.. .+ ..| +...+..+..++...+ +.+.+...+..+.+.. +.+...+ ......+...|.
T Consensus 84 ~~~~~~~~al~~~~~~-l~--~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~ 159 (334)
T d1dcea1 84 ESAALVKAELGFLESC-LR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVA 159 (334)
T ss_dssp HHHHHHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHH-HH--hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccc
Confidence 3455678889888887 33 234 4445555555554444 5788888898888875 3344443 455677888899
Q ss_pred HHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 044812 308 LDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385 (547)
Q Consensus 308 ~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 385 (547)
++.|+..++.. ...| +...|+.+...+.+.|++++|...+....+. .|+. ..+...+...+..+++...+...
T Consensus 160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999873 3334 5677889999999999988876655544332 2221 12223344456666777777777
Q ss_pred HHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
... -+++...+..+...+...|+.++|...+.+. ...|+ ..+|..++.++...|+.++|.+.++++++++|.+...
T Consensus 235 l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y 312 (334)
T d1dcea1 235 LLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312 (334)
T ss_dssp HHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence 653 2345556666777888889999999999876 55564 4588889999999999999999999999999998888
Q ss_pred HHHHHHHHHc
Q 044812 464 YVSLSNLYAS 473 (547)
Q Consensus 464 ~~~l~~~~~~ 473 (547)
|..|...+.-
T Consensus 313 ~~~L~~~~~~ 322 (334)
T d1dcea1 313 LDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 8888777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=7.1e-09 Score=94.87 Aligned_cols=147 Identities=7% Similarity=-0.133 Sum_probs=74.5
Q ss_pred HhccCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH----------hcCCchhHHHHhccCCC---CCcchHHHHHHHH
Q 044812 31 ATHRSLKLTKQSHSQILSLGHISN-PFVSTKLITAYA----------LCGQPTQSQLVFNSIQH---KDVYLYNSLINGY 96 (547)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~----------~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~ 96 (547)
........|.++++.+++.. |+ ...|+..-..+. ..|++++|+..|+...+ .+...|..+..++
T Consensus 40 ~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHH
Confidence 33344567777888777764 44 334433222222 22335556665555432 2344455555554
Q ss_pred HhcC--ChhHHHHHHHHhhhCCCCCCcchHH-HHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044812 97 VKNH--GHNEALELFSNMYYSNVSPDDFTLA-TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173 (547)
Q Consensus 97 ~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 173 (547)
...+ ++++|+..++.+.+... ++...+. .....+...+.++.|...++.+++.. +-+...|+.+..++.+.|+++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 4443 35566666666655421 1233322 23344555566666666666655554 234555666666666666665
Q ss_pred HHHHHhcc
Q 044812 174 ECLNLFDE 181 (547)
Q Consensus 174 ~A~~~~~~ 181 (547)
+|...++.
T Consensus 196 ~A~~~~~~ 203 (334)
T d1dcea1 196 DSGPQGRL 203 (334)
T ss_dssp CSSSCCSS
T ss_pred HHHHHHHH
Confidence 55444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=3.3e-07 Score=81.44 Aligned_cols=170 Identities=8% Similarity=-0.072 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC-
Q 044812 37 KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS- 115 (547)
Q Consensus 37 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~- 115 (547)
.++.++++...+.+- |....+..+.. ...+++++|.++|. .....|...+++++|.+.|++..+.
T Consensus 2 ~~~~~~l~~aek~~~-~~~~~~~~~~~--~~~~~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 2 SDPVELLKRAEKKGV-PSSGFMKLFSG--SDSYKFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CCHHHHHHHHHHHSS-CCCTHHHHHSC--CSHHHHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC-cchhHHHHhcC--CccccHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 355666666666652 22222221110 11234566665443 3466677778888888887776542
Q ss_pred ---CCCC-CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHh-cCChHHHHHHhccCCCC
Q 044812 116 ---NVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-----VDVILANSLMSMYVK-CGKFSECLNLFDEMPQR 185 (547)
Q Consensus 116 ---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 185 (547)
+-.+ -..+|..+..+|.+.|++++|...++...+.... ....++..+...|.. .|++++|++.+++
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~---- 143 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL---- 143 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH----
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHH----
Confidence 1111 1245777778888888888888888876553211 113445556666644 5888888888766
Q ss_pred ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
|.++......+ -..+|..++..+...|++++|++.|++.
T Consensus 144 -----------------------A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~ 184 (290)
T d1qqea_ 144 -----------------------AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (290)
T ss_dssp -----------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------HHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 33444333322 2346788889999999999999999887
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.7e-07 Score=70.20 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=62.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNS 443 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~ 443 (547)
...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++. ... .+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 344556666666666666666441 224555666666666666666666666655 222 3455666666666666666
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
++|+..|+++++.+|.++..+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666666665555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=7.9e-08 Score=80.42 Aligned_cols=118 Identities=9% Similarity=-0.072 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 044812 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALV 434 (547)
Q Consensus 357 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 434 (547)
|+...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. .+.|+ ...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 677777778888888888888888888877652 336777888888888888888888888876 55564 56788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
.+|...|++++|+..|++++++.|.+...+...+..+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 888888888888888888888777665555555555544333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.2e-07 Score=69.56 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=82.7
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456788899999999999987 3345 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 044812 479 AVAELRTMMKDRG 491 (547)
Q Consensus 479 ~A~~~~~~m~~~~ 491 (547)
+|+..+++..+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.2e-07 Score=79.25 Aligned_cols=96 Identities=8% Similarity=-0.033 Sum_probs=78.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICAC 400 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 400 (547)
|+...+......|.+.|++++|+..|.+.++.. +-+...|..+..+|.+.|++++|+..|+...+ +.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 566666777888889999999999999888763 33677888888889999999999999998873 455 5778888
Q ss_pred HHHHhHhcCCHHHHHHHHHhC
Q 044812 401 VVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+..+|.+.|++++|+..|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999888875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=5.2e-07 Score=71.94 Aligned_cols=118 Identities=7% Similarity=0.041 Sum_probs=96.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHG 441 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 441 (547)
.....+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++. ...| +...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34556788999999999999988652 337888889999999999999999999987 3445 5579999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHH--cCCCHHHHHHH
Q 044812 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYA--SSRRWDAVAEL 483 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~ 483 (547)
++++|...++++.+.+|.++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988888776643 34556666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=1e-07 Score=70.78 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=80.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
-.+...+.+.|++++|...|++. ...| +...|..++.++.+.|++++|+..++++++.+|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999999987 4455 577999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 044812 477 WDAVAELRTMMK 488 (547)
Q Consensus 477 ~~~A~~~~~~m~ 488 (547)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.5e-06 Score=71.40 Aligned_cols=141 Identities=7% Similarity=-0.059 Sum_probs=102.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
...+...|+++.|++.|.++. +|+...|..+...|...|++++|.+.|++.++.. +-+...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence 556678899999999998877 7888888888999999999999999999988853 22577888888889999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
...|++..... +.+... .+...|. ...++ ..++..+..++.+.|++++|.+.++++.+..
T Consensus 90 ~~~~~kAl~~~--~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTT--TTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--ccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99888876531 122100 0000000 01111 2356677788889999999999999999888
Q ss_pred CCC
Q 044812 458 PEN 460 (547)
Q Consensus 458 ~~~ 460 (547)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=8.6e-07 Score=72.99 Aligned_cols=121 Identities=11% Similarity=0.082 Sum_probs=92.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
..+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 34566778888888776542 456677777888888888888888888876 3344 5668888888899999999
Q ss_pred HHHHHHHHHHhhCCCCC----------------chHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 445 MQDLAYKSLIQLEPENP----------------SNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
+|+..|+++++..+.++ .++..++.++.+.|++++|.+.++.......
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999998887654432 3467889999999999999999998766543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=1.6e-06 Score=76.88 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=111.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----chhHHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL----GSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTEICAC 400 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 400 (547)
....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.+++..+.+.-.. ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345677777888888887776543 11222 35677778888888888888888887654321111 1345556
Q ss_pred HHHHhHh-cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-------hH
Q 044812 401 VVDMLGR-AGQLDRALDFIKTM-------PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS-------NY 464 (547)
Q Consensus 401 l~~~~~~-~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 464 (547)
+...|.. .|++++|.+.+++. +..+. ..++..+...+...|++++|...|+++....+.++. .+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666644 58888888888765 11111 346788889999999999999999999888765543 34
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 465 VSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...+.++...|+++.|.+.+++..+..
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 566777888899999999998876554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=7.3e-07 Score=71.01 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=83.1
Q ss_pred HHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
.....|.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..|+++++.+|.+..+|..++.++...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456788999999999999987 3344 6779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 044812 478 DAVAELRTMMKDRG 491 (547)
Q Consensus 478 ~~A~~~~~~m~~~~ 491 (547)
++|.+.+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.5e-07 Score=67.56 Aligned_cols=107 Identities=12% Similarity=-0.026 Sum_probs=82.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ---LDRALDFIKTM-PVEPSP---SIWGALVS 435 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 435 (547)
..+++.+...+++++|++.|++..... +.++.++..+..++.+.++ +++|+.+++++ ...|+. .+|..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 346677778889999999999888652 3467888888888877554 45688889886 334433 36788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+|.+.|++++|++.|+++++.+|.+..+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999987766554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.41 E-value=3.9e-05 Score=66.58 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=97.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIV-GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQL 411 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 411 (547)
..+.+.|...++...+.|......... ..............+...+..... ..+...+..|...|.. ..+.
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred chhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccccc
Confidence 345677777777776665322211111 111112234456666666666543 2345556666666654 4566
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc----CCCHHHHHHH
Q 044812 412 DRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS----SRRWDAVAEL 483 (547)
Q Consensus 412 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 483 (547)
..+..+++......+......+...+.. ..+++.|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.
T Consensus 163 ~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 163 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred ccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 7777777766334567777777766665 568999999999998875 46688899999886 4489999999
Q ss_pred HHHHHhCCCc
Q 044812 484 RTMMKDRGLK 493 (547)
Q Consensus 484 ~~~m~~~~~~ 493 (547)
|++..+.|-.
T Consensus 241 ~~kAa~~g~~ 250 (265)
T d1ouva_ 241 FKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHCcCH
Confidence 9998877753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.4e-06 Score=67.73 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=72.5
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
.+|+.+..+|.+.|++++|+..+++. ...| +...|..++.+|...|++++|+..|+++++++|.++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677888999999999999999887 4455 677999999999999999999999999999999999999988888776
Q ss_pred CCCHHHH
Q 044812 474 SRRWDAV 480 (547)
Q Consensus 474 ~g~~~~A 480 (547)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=8.4e-06 Score=65.35 Aligned_cols=113 Identities=5% Similarity=-0.031 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 439 (547)
..+......+.+.|++++|+..|++.+......+.... ..... ... ....+|+.+..+|.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~---~~~----~~~~~~~nla~~y~k 74 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQK---AQA----LRLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHH---HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhh---hch----hHHHHHHHHHHHHHh
Confidence 33444555677777888888877777654221111100 00000 000 012467778899999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+..
T Consensus 75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999987754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.1e-06 Score=64.28 Aligned_cols=92 Identities=9% Similarity=-0.032 Sum_probs=76.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--CchHHHHHHHH
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHG---NSEMQDLAYKSLIQLEPEN--PSNYVSLSNLY 471 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~ 471 (547)
..++..+...+++++|.+.|++. ...| +..++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999987 3334 6678899999998755 4557999999999988654 34789999999
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 044812 472 ASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~ 490 (547)
.+.|++++|++.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.27 E-value=1.2e-05 Score=63.17 Aligned_cols=112 Identities=12% Similarity=-0.040 Sum_probs=77.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 440 (547)
.+..-...+.+.|++.+|+..|++........+.... ........ .....+|..+..+|.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~----~~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKK----NIEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--------------HHHHHhhh----hHHHHHHhhHHHHHHHh
Confidence 4445556677777788887777776643211110000 00000000 01134677788899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
|++++|++.++++++.+|.+..+|..++.+|...|++++|...|++..+.
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999987754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.26 E-value=9.5e-06 Score=64.92 Aligned_cols=93 Identities=6% Similarity=0.042 Sum_probs=75.2
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
.+|+.+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45666788899999999999999886 333 4677899999999999999999999999999999999998888888777
Q ss_pred CCCHH-HHHHHHHHHH
Q 044812 474 SRRWD-AVAELRTMMK 488 (547)
Q Consensus 474 ~g~~~-~A~~~~~~m~ 488 (547)
.+... ...+++..|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 66544 3455555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=8.8e-06 Score=65.23 Aligned_cols=86 Identities=8% Similarity=-0.010 Sum_probs=69.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
....+..+..++.+.|++++|+..+++. .+.| +...|..++.++...|++++|+..|+++++++|.++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556777888889999999999998886 4555 5668888999999999999999999999999999888888887776
Q ss_pred HcCCCHHH
Q 044812 472 ASSRRWDA 479 (547)
Q Consensus 472 ~~~g~~~~ 479 (547)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0013 Score=57.97 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=102.2
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHc
Q 044812 53 SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132 (547)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 132 (547)
||..-...+.+.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++...- +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 444444555566666666666666666543 35555566666666666666554331 3445655655555
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCCchhHHHH
Q 044812 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP---QRNVGSWNVRISGHASSGDFSLVVRS 209 (547)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~a 209 (547)
.......+. +.......+......++..|-..|.+++...+++... ..+...++.++..|++.+. ++ .
T Consensus 81 ~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~k---l 151 (336)
T d1b89a_ 81 DGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QK---M 151 (336)
T ss_dssp HTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HH---H
T ss_pred hCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HH---H
Confidence 554443321 1112222333444556666666666666666666432 2334455566666655442 22 2
Q ss_pred HHHHhhcCC-C----------ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHH
Q 044812 210 RRVFDQMKR-R----------NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278 (547)
Q Consensus 210 ~~~~~~~~~-~----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 278 (547)
.+.+..... - ....|..++..|.+.|+++.|..+.-.- .++..-....+..+.+..+.+...+
T Consensus 152 ~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~------~~~~~~~~~f~e~~~k~~N~e~~~~ 225 (336)
T d1b89a_ 152 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH------PTDAWKEGQFKDIITKVANVELYYR 225 (336)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS------TTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc------chhhhhHHHHHHHHHccCChHHHHH
Confidence 222222110 0 1122445556666666666666554221 2222223333444455555554444
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044812 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (547)
......+.. +...+.++......-+..+..+.++
T Consensus 226 ~i~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 226 AIQFYLEFK----PLLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp HHHHHHHHC----GGGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHcC----HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 444444321 2223444444444444444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=1.1e-05 Score=63.32 Aligned_cols=127 Identities=11% Similarity=-0.007 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
.+......+.+.|++.+|+..|.+.+..- |. .....-.... .... .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-----------~~~~~~~~~~---~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-----------TEEWDDQILL---DKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-----------CTTCCCHHHH---HHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-----------hhhhhhHHHH---Hhhh-----hHHHHHHhhHHHHH
Confidence 35556678889999999999999987641 11 0000000000 1110 11245777889999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
.+.|++++|++.+++. ...| +..+|..++.++...|++++|+..|+++++++|.++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999986 4445 677999999999999999999999999999999999888777666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6e-06 Score=62.61 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=74.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-------hHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS-------NYVSLS 468 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 468 (547)
+..+...+.+.|++++|+..|++. ...| +...|..+..+|.+.|++++|++.++++++.+|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788888888888888876 3334 5778999999999999999999999999999877765 455566
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 044812 469 NLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~ 489 (547)
..+...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 777888899999999987653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=0.001 Score=57.11 Aligned_cols=225 Identities=13% Similarity=0.018 Sum_probs=147.0
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc----cCCchhHHHHHHHHHHcCCCCchhHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLC 295 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 295 (547)
|+..+..|...+.+.+++++|+++|++. .+.| +...+..+...+.. ..+...+...+....+.+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kA-a~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKA-CDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence 3456677778888889999999999988 5554 44455555555554 557788888888877766 33334
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhcCCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 296 NALIDMYSK----CGSLDCARRVFEDSSFNKDAITWSSIVSGYG----LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 296 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
..+...+.. .++.+.|...++.............+...+. .......+...+...... .+...+..|..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 444444443 4577888888876321222333333333333 244566777777776663 35566666666
Q ss_pred HHhc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044812 368 ACGR----SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439 (547)
Q Consensus 368 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 439 (547)
.+.. ..+...+...++...+. | +......+...|.. ..++++|..+|++....-++..+..|...|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhccCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHc
Confidence 6654 45677788888877653 2 45555556555554 56899999999987433467777778887765
Q ss_pred ----cCCHHHHHHHHHHHHhhCC
Q 044812 440 ----HGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 440 ----~~~~~~a~~~~~~~~~~~~ 458 (547)
..+.++|.+.|+++.+.+.
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCCccCHHHHHHHHHHHHHCcC
Confidence 3478899999999988874
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.13 E-value=9.2e-06 Score=65.44 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=86.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 443 (547)
.........|++++|.+.|.....-+.-.+-. .+...........-++. .....+..+..++...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~--------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLD--------DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccc--------cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 33456778899999999999887543211100 00000011111111111 1234677889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH-----hCCCccCCc
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK-----DRGLKKSPG 497 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 497 (547)
++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++. +.|+.|.+.
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999974 468887664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=1.8e-05 Score=63.36 Aligned_cols=111 Identities=8% Similarity=0.060 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 439 (547)
.+......+...|++++|+..|+++.+.. +.. .......+. ....| ....|..+..++.+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~~~----------~~~~~~~~~------~~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADG------AKLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHH------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hhh----------hhhhhhHHH------HHhChhhHHHHHHHHHHHHh
Confidence 34455556667777777777777665320 000 000000000 01123 34577888999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.|++++|+..++++++++|.++.+|..++.+|.+.|++++|++.|++..+.
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=7.8e-05 Score=59.36 Aligned_cols=114 Identities=4% Similarity=-0.038 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 438 (547)
...+.-....+.+.|++.+|...|++........+.... +. ......+ ...+|..+..+|.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~-~~~~~~~----~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KE-SKASESF----LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HH-HHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hh-hhhcchh----HHHHHHhHHHHHH
Confidence 344555566677777777777777766543211111000 00 0000000 1345677888999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+.|++++|+..++++++++|.+..+|..++.+|...|++++|.+.|++..+..
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.96 E-value=1.8e-05 Score=58.14 Aligned_cols=91 Identities=9% Similarity=-0.010 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044812 89 YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168 (547)
Q Consensus 89 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 168 (547)
+-.+...+.+.|++++|+..|++..+.... +..+|..+..++.+.+++++|...+++.++.. +.+...+..+..+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 334566778899999999999998876432 56778888899999999999999999998876 4567888889999999
Q ss_pred cCChHHHHHHhcc
Q 044812 169 CGKFSECLNLFDE 181 (547)
Q Consensus 169 ~g~~~~A~~~~~~ 181 (547)
.|++++|.+.|++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.1e-06 Score=84.52 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=42.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASV 438 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 438 (547)
.+..+...+.+.|+.+.|...+...... . ...++..+...+...|++++|...|++. ...|+ ...|+.|+..+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444445555555555444433321 1 1233444455555555555555555544 22332 335555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
..|+..+|+..|.+++...|+.+.++..|+..+.
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=0.0067 Score=53.28 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=63.4
Q ss_pred CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHc
Q 044812 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199 (547)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 199 (547)
|..-...+...|.+.|.++.|..++..+. -|..++..+.+.+++..|.+++.+. .+..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 33333345555555666666665554321 1344555556666666665555433 233355555555544
Q ss_pred CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhcc
Q 044812 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270 (547)
Q Consensus 200 ~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 270 (547)
...... ..+.......+......++..|-..|.+++...++... ... -.++...++-++..+++.
T Consensus 82 ~~e~~l----a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~-~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 82 GKEFRL----AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA-LGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp TTCHHH----HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTS-TTCCHHHHHHHHHHHHTT
T ss_pred CcHHHH----HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH-HcC-CccchHHHHHHHHHHHHh
Confidence 443322 11111111234444566788888888888888888865 221 244555666677766664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00019 Score=53.92 Aligned_cols=92 Identities=4% Similarity=0.014 Sum_probs=49.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHH
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEPS-----PSIWGALVS 435 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~ 435 (547)
+...+...|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..++++ +..+. ..+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554431 123444555555555555555555555543 10111 235556666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.+...+++++|++.|++.+...|
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCC
Confidence 67777777777777777776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=3.8e-05 Score=59.36 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHG-----------NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
++|...|++. .+.| +..+|..++.+|...| ++++|.+.|+++++.+|.+...+..|....
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~------- 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA------- 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------
Confidence 4444444443 2233 3345555555554433 468899999999999999887776666654
Q ss_pred HHHHHHHHHHhCCC
Q 044812 479 AVAELRTMMKDRGL 492 (547)
Q Consensus 479 ~A~~~~~~m~~~~~ 492 (547)
.|.+++.+..+.|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666666664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.75 E-value=8.6e-05 Score=58.26 Aligned_cols=64 Identities=8% Similarity=-0.175 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------CCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE-----------NPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...|+.+..+|...|++++|...++++++..|. ...++..++.+|...|++++|.+.|++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888899999999999999999998875321 1225778999999999999999999997653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=7.9e-05 Score=52.60 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=55.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM----P----VEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|+..++++++++|.++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334566666777777777766654 1 1223 458889999999999999999999999999999998888775
Q ss_pred HH
Q 044812 469 NL 470 (547)
Q Consensus 469 ~~ 470 (547)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=2.3e-05 Score=74.90 Aligned_cols=220 Identities=9% Similarity=-0.047 Sum_probs=121.6
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHH
Q 044812 208 RSRRVFDQMK---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284 (547)
Q Consensus 208 ~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 284 (547)
+|.+.|++.. +.....+..+..++...|++++| |+++ .. ..|+...-..+...+ -...+..+...++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~-i~--~dp~~a~~~~~e~~L-w~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKM-LV--TDLEYALDKKVEQDL-WNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHH-HH--HCHHHHHHHTHHHHH-HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHH-HH--cChhhHHHHhHHHHH-HHHHHHHHHHHHHHhc
Confidence 4555565543 33456777788888888888876 5555 22 123211100010000 0112345556666655
Q ss_pred HcCCCCchhHHHH--HHHHHHhcCCHHHHHHHHhc-CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044812 285 RKELNHDVSLCNA--LIDMYSKCGSLDCARRVFED-SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360 (547)
Q Consensus 285 ~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 360 (547)
+....++..-... +...+...+.++.|+..+.. .++. ++...+..+...+.+.|+.+.|...+...... .| ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence 5443333332222 22223345677888877765 3333 34556788888889999999999888776552 12 35
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSAS 437 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 437 (547)
++..+...+...|++++|...|++..+. .| +...|+.|...+...|+..+|...|.+. ...|-..++..|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6778888899999999999999999865 45 6789999999999999999999999886 3356777888888776
Q ss_pred HHc
Q 044812 438 VMH 440 (547)
Q Consensus 438 ~~~ 440 (547)
.+.
T Consensus 231 ~~~ 233 (497)
T d1ya0a1 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.45 E-value=0.00023 Score=60.96 Aligned_cols=128 Identities=12% Similarity=-0.073 Sum_probs=88.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLD 412 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 412 (547)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .| +...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 346788999999999988862 336788888888899999999999999988754 45 3445555555555445544
Q ss_pred HHHHHHHhC--CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 413 RALDFIKTM--PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 413 ~A~~~~~~~--~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
++..-.... ...|+. ..+......+...|+.++|.++++++.+..|..+..++
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 443332221 123332 34445566777889999999999999999888776544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.43 E-value=6.6e-05 Score=57.96 Aligned_cols=86 Identities=9% Similarity=0.083 Sum_probs=59.0
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM----------HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
.+.+.+++|...|++. ...| +..++..+..++.. .+.+++|+..|+++++++|.++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444455555555554 2223 33455555554442 3456889999999999999999999999999987
Q ss_pred CCC-----------HHHHHHHHHHHHhCC
Q 044812 474 SRR-----------WDAVAELRTMMKDRG 491 (547)
Q Consensus 474 ~g~-----------~~~A~~~~~~m~~~~ 491 (547)
.|+ +++|.+.|++..+..
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 653 678888888876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.42 E-value=0.00073 Score=52.68 Aligned_cols=90 Identities=13% Similarity=0.050 Sum_probs=57.3
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc----------hhHHHHHHHHhHhcCCHHHHHHHHHhC--------CCCCC----
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPT----------TEICACVVDMLGRAGQLDRALDFIKTM--------PVEPS---- 426 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---- 426 (547)
+...|++++|+..|++.++...-.|+ ...|+.+..+|...|++++|...+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 44455666666666655543221121 245666667777777777776666554 11222
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 427 -PSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 427 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
...+..+..+|...|++++|+..|++++++.|
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22567788999999999999999999998753
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=0.0031 Score=50.06 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hcCCCCchhH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN----TYRIKPTTEI 397 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 397 (547)
.+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+..+|++.|+++.+ ..|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34455556666666666666666665542 22455666666666666666666666665432 2355555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.0016 Score=45.56 Aligned_cols=65 Identities=12% Similarity=-0.057 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN-------PSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...+-.++..+.+.|+++.|+..|+++++..|.+ ..++..|+.++.+.|++++|++.++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3344568889999999999999999999875433 3468899999999999999999999987653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.13 E-value=0.017 Score=41.06 Aligned_cols=141 Identities=10% Similarity=0.026 Sum_probs=98.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (547)
+.-.|..++..+++.+.... .+..-|+.+|--....-+-+-..+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 44567777777777777663 3556666666555555555566666665544333222 333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 414 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
...-+-.+. .+..-.+..+..+...|+-+.-.++++.+.+.+..+|.....++.+|.+.|...++.+++.+..++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 344556677788899999999999999988888778999999999999999999999999999999975
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.09 E-value=0.00012 Score=62.75 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=84.4
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-SIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 446 (547)
..+.|++++|+..+++.++.. +.+...+..+...|+..|++++|...++.. ...|+. ..+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 456799999999999998752 448899999999999999999999999987 455654 4555555554443333332
Q ss_pred HHHHHHHHhh-CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 447 DLAYKSLIQL-EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 447 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.......... .|++...+...+..+.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2221111111 23333445566778889999999999999986643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.48 Score=43.35 Aligned_cols=26 Identities=19% Similarity=0.008 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..-.....+....|+.+.|...+...
T Consensus 103 ~~~c~~~~A~~~~g~~~~a~~~~~~l 128 (450)
T d1qsaa1 103 EAQCNYYYAKWNTGQSEEAWQGAKEL 128 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33344556666777777777776655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.028 Score=40.40 Aligned_cols=63 Identities=2% Similarity=-0.126 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 427 PSIWGALVSASVMHG---NSEMQDLAYKSLIQLEPENP-SNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
..+--....++.+.. +.++++.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333333444444332 33455555555555555432 3455555566666666666666655544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.88 E-value=0.064 Score=39.65 Aligned_cols=83 Identities=7% Similarity=-0.073 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc----CCCHHHH
Q 044812 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS----SRRWDAV 480 (547)
Q Consensus 409 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 480 (547)
.+.++|..++++....-++.....|...|.. ..+.++|.+.|++..+.+ ++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4555666666554222344444445444443 346778888888877665 34567777777766 4578888
Q ss_pred HHHHHHHHhCCCc
Q 044812 481 AELRTMMKDRGLK 493 (547)
Q Consensus 481 ~~~~~~m~~~~~~ 493 (547)
.+++++..+.|..
T Consensus 115 ~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 115 VKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCH
Confidence 8888887777653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.87 E-value=0.31 Score=35.69 Aligned_cols=111 Identities=10% Similarity=0.023 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHHHH
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLDRA 414 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 414 (547)
++++|..+|++..+.|... ....|. .....+.++|...+++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 5677888888877766322 222222 34456778888888877654 3 34444445555543 4567888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 044812 415 LDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 458 (547)
.++|++.-..-++.....|...|.. ..+.++|.+.|+++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888877323455556666666665 4588899999998887663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.26 Score=35.22 Aligned_cols=73 Identities=11% Similarity=-0.033 Sum_probs=51.9
Q ss_pred CchhHHHHHHHHhHhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 393 PTTEICACVVDMLGRAG---QLDRALDFIKTM-PVEP-SP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 393 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
+.+.+--....++.+.. +.++++.++++. ...| +. ..+-.|.-+|.+.|++++|.+.++.+++.+|.+..+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 44445445566666554 456788888776 2234 33 46677888899999999999999999999999876543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=3.9 Score=36.91 Aligned_cols=388 Identities=9% Similarity=-0.035 Sum_probs=223.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISN-PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 101 (547)
|..+..+-..-+..+ ..++..-+.+..-.|- ...-...+..+.+.++++...+.+...+ .+...-.....+..+.|+
T Consensus 40 Yl~~~~l~~~~~~~~-~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~ 117 (450)
T d1qsaa1 40 YLEYRQITDDLMNQP-AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQ 117 (450)
T ss_dssp HHHHHHHHHTGGGCC-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccccCC-HHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCC
Confidence 444444444433322 2344444444422222 2233445677888899998887775432 244444566778888999
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
..+|...+..+-..|.. .+. ....++..+.+.| ..+...+-.-+......|+...|..+...
T Consensus 118 ~~~a~~~~~~lW~~~~~-~p~----------------~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~ 179 (450)
T d1qsaa1 118 SEEAWQGAKELWLTGKS-QPN----------------ACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (450)
T ss_dssp HHHHHHHHHHHHSCSSC-CCT----------------HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCCC-Cch----------------HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhh
Confidence 99999988877665432 222 2334455555544 33444444456666778999999999988
Q ss_pred CCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHH--CCCHHHHHHHHHHchhcCCCCCChHH
Q 044812 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ--NGDLDEALVLFLEMQLKDRIEPNKVS 259 (547)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~~p~~~~ 259 (547)
+..........++........ +....... ..+......+..++.+ ..+.+.|..++..........++...
T Consensus 180 l~~~~~~~~~a~~~l~~~p~~------~~~~~~~~-~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~ 252 (450)
T d1qsaa1 180 MPADYQTIASAIISLANNPNT------VLTFARTT-GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQ 252 (450)
T ss_dssp CCGGGHHHHHHHHHHHHCGGG------HHHHHHHS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHhChHh------HHHHHhcC-CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHH
Confidence 776555455555555443332 22222222 2233332333333332 35788899998887333333333221
Q ss_pred --HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC--hhhHHHHHHHHH
Q 044812 260 --LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD--AITWSSIVSGYG 335 (547)
Q Consensus 260 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~li~~~~ 335 (547)
...+.......+..+.+...+......+. +.......+......+++..+...++.+...+. .....-+..++.
T Consensus 253 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~ 330 (450)
T d1qsaa1 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL 330 (450)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHH
Confidence 22233344556667778877777665543 344444456666778999999999998763332 223455778899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhH-----HHHHHHHhHhcC
Q 044812 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEI-----CACVVDMLGRAG 409 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-----~~~l~~~~~~~g 409 (547)
..|+.+.|..+|..... .++ |..++.+- +.|..-. + .....+. .... -..-+..+...|
T Consensus 331 ~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~-~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~ra~~L~~~g 395 (450)
T d1qsaa1 331 ERGREAEAKEILHQLMQ---QRG---FYPMVAAQ-RIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWN 395 (450)
T ss_dssp HTTCHHHHHHHHHHHHT---SCS---HHHHHHHH-HTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTT
T ss_pred HcCChhhHHHHHHHHhc---CCC---hHHHHHHH-HcCCCCC-------C-CcCCCCccHHHhhhcChHHHHHHHHHHcC
Confidence 99999999999998864 233 33333221 1111000 0 0000000 0000 112355677889
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 410 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
....|...+..+....+......+.....+.|.++.|+....++.
T Consensus 396 ~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 396 LDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 999999988776334466667777888889999999998877653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.23 E-value=1.3 Score=31.31 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=93.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044812 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 381 (547)
+.-.|.+++..+++.+.--..+..-||-+|--....-+-+-..++++..-.. + | ....+++......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHHHHH
Confidence 4557889999999887542455666777776666666666666666655332 1 1 1222333333333
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
+-.+ ..+......-++.+..+|+-++-.++++.+ ..+|++.....+..+|.+.|+..++-+++.++.+.+
T Consensus 79 ~~~~------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 79 GVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3222 124455666778888899988888888874 456888889999999999999999999999988765
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.41 E-value=2.5 Score=28.18 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 421 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
+..-|++.+..+-+++|.+.+|+..|.++++-+......+...|..++.
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3567999999999999999999999999999988776445667766543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.39 E-value=5.1 Score=26.65 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+.-++.+-++.+....+.|++....+.+.+|-+.+++..|.++|+....+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4446666777777777889999999999999999999999999988866533 34556666654
|