Citrus Sinensis ID: 044843

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET
cccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccEEEEEEEEEccEEEcHHHHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHcccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccEEEcEEEEccccccc
cccEEEEcccccccccHHHHHHHHHHHHHHHHHccccccEEEHHEEcccEEEEEEEEEcccEEcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHccccccccEEEccccccHHHccHHHHHHHHHHHHHHHHHHccccccEccccccEEEEEEEccccEEEEEEEEEEEEEEccccc
metflftsesvneghpdklcdQVSDAVLDAclaqdpdskvacetctktnMVMVFGEITTKANVDYEKIVRDTCrsigftsddvgldadHCKVLVNIeqqspdiaqgVHGHLTkraeeigagdqghmfgyatdetpelmplSHVLATKLGAKLTEvrkngtcpwlrpdgktqVTVEYYNENGAMVPVRVHTVLISTQHDET
METFLFtsesvneghpdkLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEittkanvdyeKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTevrkngtcpwlrpdgktQVTVEYYNENGAMVPVRVHTVLISTQHDET
METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET
******************LCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLI*******
*ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVL*STQH***
*************GHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET
*********SVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQ****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query200 2.2.26 [Sep-21-2011]
Q9AT56 393 S-adenosylmethionine synt N/A no 1.0 0.508 0.955 1e-112
Q96552 393 S-adenosylmethionine synt N/A no 1.0 0.508 0.95 1e-112
Q8GTL5 429 S-adenosylmethionine synt N/A no 1.0 0.466 0.955 1e-112
Q96551 393 S-adenosylmethionine synt N/A no 1.0 0.508 0.955 1e-112
Q84MM2 393 S-adenosylmethionine synt N/A no 1.0 0.508 0.96 1e-112
Q4H1G3 393 S-adenosylmethionine synt N/A no 1.0 0.508 0.96 1e-112
Q9AT55 393 S-adenosylmethionine synt N/A no 1.0 0.508 0.945 1e-111
A9PDZ7 393 S-adenosylmethionine synt yes no 1.0 0.508 0.95 1e-111
A7Q0V4 391 S-adenosylmethionine synt yes no 1.0 0.511 0.945 1e-111
A9PEK8 395 S-adenosylmethionine synt no no 0.995 0.503 0.949 1e-111
>sp|Q9AT56|METK1_ELAUM S-adenosylmethionine synthase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/200 (95%), Positives = 196/200 (98%)

Query: 1   METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
           METFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDPDSKVACETC+KTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCSKTNMVMVFGEITTK 60

Query: 61  ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
           ANVDYEKIVRDTCR+IGF SDDVGLDAD+CKVLVNIEQQSPDIAQGVHGH TKR EEIGA
Sbjct: 61  ANVDYEKIVRDTCRAIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 120

Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
           GDQGHMFGYATDETPE MPLSHVLATKLGA+LTEVRKNGTCPWLRPDGKTQVTVEYYNEN
Sbjct: 121 GDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180

Query: 181 GAMVPVRVHTVLISTQHDET 200
           GAMVPVRVHTVLISTQHDET
Sbjct: 181 GAMVPVRVHTVLISTQHDET 200
Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
Elaeagnus umbellata (taxid: 43233)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|Q96552|METK2_CATRO S-adenosylmethionine synthase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GTL5|METK_CARPA S-adenosylmethionine synthase OS=Carica papaya GN=SAMS PE=2 SV=1 Back     alignment and function description
>sp|Q96551|METK1_CATRO S-adenosylmethionine synthase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1 Back     alignment and function description
>sp|Q84MM2|METK_LITCN S-adenosylmethionine synthase OS=Litchi chinensis GN=SAMS PE=2 SV=1 Back     alignment and function description
>sp|Q4H1G3|METK2_BETVU S-adenosylmethionine synthase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT55|METK2_ELAUM S-adenosylmethionine synthase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1 Back     alignment and function description
>sp|A9PDZ7|METK2_POPTR S-adenosylmethionine synthase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1 Back     alignment and function description
>sp|A7Q0V4|METK5_VITVI S-adenosylmethionine synthase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1 Back     alignment and function description
>sp|A9PEK8|METK3_POPTR S-adenosylmethionine synthase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
189345252 307 S-adenosylmethionine synthetase [Panax g 1.0 0.651 0.965 1e-111
449522053 393 PREDICTED: S-adenosylmethionine synthase 1.0 0.508 0.955 1e-111
449436329 393 PREDICTED: S-adenosylmethionine synthase 1.0 0.508 0.955 1e-111
449472806 393 PREDICTED: S-adenosylmethionine synthase 1.0 0.508 0.955 1e-111
449522051 401 PREDICTED: S-adenosylmethionine synthase 1.0 0.498 0.955 1e-111
75308026 393 RecName: Full=S-adenosylmethionine synth 1.0 0.508 0.955 1e-111
255543014 403 s-adenosylmethionine synthetase, putativ 1.0 0.496 0.955 1e-111
449472803 401 PREDICTED: S-adenosylmethionine synthase 1.0 0.498 0.955 1e-111
444436384 392 SAM2-like protein, partial [Eucalyptus c 1.0 0.510 0.95 1e-111
3024127 393 RecName: Full=S-adenosylmethionine synth 1.0 0.508 0.95 1e-110
>gi|189345252|gb|ACD92982.1| S-adenosylmethionine synthetase [Panax ginseng] Back     alignment and taxonomy information
 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/200 (96%), Positives = 197/200 (98%)

Query: 1   METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
           METFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 61  ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
           ANVDYEKIVRDTCRSIGF SDDVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTK+ EEIGA
Sbjct: 61  ANVDYEKIVRDTCRSIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
           GDQGHMFGYATDETPELMPLSHVLATKLGA+LTEVRKNGTC WLRPDGKTQVTVEYYNEN
Sbjct: 121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNEN 180

Query: 181 GAMVPVRVHTVLISTQHDET 200
           GAMVPVRVHTVLISTQHDET
Sbjct: 181 GAMVPVRVHTVLISTQHDET 200

Source: Panax ginseng

Species: Panax ginseng

Genus: Panax

Family: Araliaceae

Order: Apiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449522053|ref|XP_004168042.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 2 [Cucumis sativus] gi|449522055|ref|XP_004168043.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 3 [Cucumis sativus] gi|449522057|ref|XP_004168044.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 4 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449436329|ref|XP_004135945.1| PREDICTED: S-adenosylmethionine synthase 1-like [Cucumis sativus] gi|449436367|ref|XP_004135964.1| PREDICTED: S-adenosylmethionine synthase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449472806|ref|XP_004153700.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 2 [Cucumis sativus] gi|449472809|ref|XP_004153701.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 3 [Cucumis sativus] gi|449523886|ref|XP_004168954.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 4 [Cucumis sativus] gi|449523888|ref|XP_004168955.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 5 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449522051|ref|XP_004168041.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|75308026|sp|Q9AT56.1|METK1_ELAUM RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 gi|13540316|gb|AAK29409.1|AF346305_1 S-adenosyl-L-methionine synthetase [Elaeagnus umbellata] Back     alignment and taxonomy information
>gi|255543014|ref|XP_002512570.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223548531|gb|EEF50022.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449472803|ref|XP_004153699.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 1 [Cucumis sativus] gi|449523880|ref|XP_004168951.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 1 [Cucumis sativus] gi|449523882|ref|XP_004168952.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 2 [Cucumis sativus] gi|449523884|ref|XP_004168953.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 3 [Cucumis sativus] Back     alignment and taxonomy information
>gi|444436384|gb|AGE09560.1| SAM2-like protein, partial [Eucalyptus cladocalyx] Back     alignment and taxonomy information
>gi|3024127|sp|Q96552.1|METK2_CATRO RecName: Full=S-adenosylmethionine synthase 2; Short=AdoMet synthase 2; AltName: Full=Methionine adenosyltransferase 2; Short=MAT 2 gi|1655578|emb|CAA95857.1| S-adenosyl-L-methionine synthetase 2 [Catharanthus roseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
TAIR|locus:2141385 393 SAM-2 "S-adenosylmethionine sy 1.0 0.508 0.935 2.3e-101
TAIR|locus:2196160 393 SAM1 "S-adenosylmethionine syn 1.0 0.508 0.93 2.7e-100
TAIR|locus:2089070 393 MTO3 "METHIONINE OVER-ACCUMULA 1.0 0.508 0.91 2.4e-99
TAIR|locus:2058011 390 MAT3 "methionine adenosyltrans 1.0 0.512 0.89 1.8e-96
DICTYBASE|DDB_G0291179 384 metK "S-adenosylmethionine syn 0.985 0.513 0.7 1.8e-71
ZFIN|ZDB-GENE-030131-6127 390 mat1a "methionine adenosyltran 0.975 0.5 0.670 3.8e-69
UNIPROTKB|A7E3T7 395 MAT2A "S-adenosylmethionine sy 0.975 0.493 0.670 4.9e-69
UNIPROTKB|D0G777 395 MATA2 "S-adenosylmethionine sy 0.975 0.493 0.670 4.9e-69
RGD|2322041 387 LOC100363915 "rCG56483-like" [ 0.975 0.503 0.659 1.3e-68
UNIPROTKB|E2R431 395 MAT2A "Uncharacterized protein 0.975 0.493 0.664 1.7e-68
TAIR|locus:2141385 SAM-2 "S-adenosylmethionine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 187/200 (93%), Positives = 193/200 (96%)

Query:     1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
             METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTK
Sbjct:     1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query:    61 ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
             A +DYEKIVRDTCRSIGF SDDVGLDAD CKVLVNIEQQSPDIAQGVHGH TKR E+IGA
Sbjct:    61 ATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 120

Query:   121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
             GDQGHMFGYATDETPELMPLSHVLATK+GA+LTEVRKNGTC WLRPDGKTQVTVEYYN+N
Sbjct:   121 GDQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDN 180

Query:   181 GAMVPVRVHTVLISTQHDET 200
             GAMVPVRVHTVLISTQHDET
Sbjct:   181 GAMVPVRVHTVLISTQHDET 200
GO:0004478 "methionine adenosyltransferase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006556 "S-adenosylmethionine biosynthetic process" evidence=IEA;ISS
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA;RCA
GO:0070062 "extracellular vesicular exosome" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2196160 SAM1 "S-adenosylmethionine synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089070 MTO3 "METHIONINE OVER-ACCUMULATOR 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058011 MAT3 "methionine adenosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291179 metK "S-adenosylmethionine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6127 mat1a "methionine adenosyltransferase I, alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A7E3T7 MAT2A "S-adenosylmethionine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D0G777 MATA2 "S-adenosylmethionine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2322041 LOC100363915 "rCG56483-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R431 MAT2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96551METK1_CATRO2, ., 5, ., 1, ., 60.9551.00.5089N/Ano
Q96552METK2_CATRO2, ., 5, ., 1, ., 60.951.00.5089N/Ano
Q8GTL5METK_CARPA2, ., 5, ., 1, ., 60.9551.00.4662N/Ano
P47916METK_POPDE2, ., 5, ., 1, ., 60.94970.9950.5037N/Ano
Q4LB21METK4_HORVU2, ., 5, ., 1, ., 60.931.00.5050N/Ano
Q56TU3METK2_DAUCA2, ., 5, ., 1, ., 60.9251.00.5089N/Ano
Q6SYB9METK2_TOBAC2, ., 5, ., 1, ., 60.92960.9950.5102N/Ano
A9PDZ7METK2_POPTR2, ., 5, ., 1, ., 60.951.00.5089yesno
A7NVX9METK2_VITVI2, ., 5, ., 1, ., 60.941.00.5089yesno
Q9LDQ7METK_CAMSI2, ., 5, ., 1, ., 60.931.00.5089N/Ano
Q84MM2METK_LITCN2, ., 5, ., 1, ., 60.961.00.5089N/Ano
P49611METK1_BRAJU2, ., 5, ., 1, ., 60.9451.00.5089N/Ano
P49613METK2_PEA2, ., 5, ., 1, ., 60.93460.9950.5320N/Ano
P43281METK2_SOLLC2, ., 5, ., 1, ., 60.931.00.5089N/Ano
P93254METK_MESCR2, ., 5, ., 1, ., 60.941.00.5102N/Ano
A2Y053METK1_ORYSI2, ., 5, ., 1, ., 60.931.00.5050N/Ano
Q9SBQ5METK2_PETHY2, ., 5, ., 1, ., 60.921.00.5128N/Ano
P50302METK2_ACTCH2, ., 5, ., 1, ., 60.9251.00.5128N/Ano
A4PU48METK_MEDTR2, ., 5, ., 1, ., 60.93460.9950.5050N/Ano
A7Q0V4METK5_VITVI2, ., 5, ., 1, ., 60.9451.00.5115yesno
Q5DNB1METK_BRARP2, ., 5, ., 1, ., 60.9451.00.5089N/Ano
B0LXM0METK_WHEAT2, ., 5, ., 1, ., 60.9251.00.5050N/Ano
A4ULF8METK_MEDFA2, ., 5, ., 1, ., 60.92960.9950.5025N/Ano
Q94FA4METK5_BRAJU2, ., 5, ., 1, ., 60.9451.00.5089N/Ano
Q94FA6METK3_BRAJU2, ., 5, ., 1, ., 60.9351.00.5089N/Ano
Q6F3F0METK3_ATRNU2, ., 5, ., 1, ., 60.931.00.5050N/Ano
Q6F3F1METK4_ATRNU2, ., 5, ., 1, ., 60.9251.00.5050N/Ano
Q8W3Y4METK_PHALU2, ., 5, ., 1, ., 60.93460.9950.5076N/Ano
Q9FUZ1METK2_BRAJU2, ., 5, ., 1, ., 60.9351.00.5089N/Ano
P17562METK2_ARATH2, ., 5, ., 1, ., 60.9351.00.5089yesno
P23686METK1_ARATH2, ., 5, ., 1, ., 60.931.00.5089yesno
Q7XZR1METK1_ATRNU2, ., 5, ., 1, ., 60.921.00.5050N/Ano
Q9SBQ7METK3_PETHY2, ., 5, ., 1, ., 60.941.00.5089N/Ano
O22338METK_MUSAC2, ., 5, ., 1, ., 60.92960.9950.5063N/Ano
A9NYY0METK2_PICSI2, ., 5, ., 1, ., 60.9251.00.5089N/Ano
A7L2Z6METK_GOSHI2, ., 5, ., 1, ., 60.931.00.5089N/Ano
Q0DKY4METK1_ORYSJ2, ., 5, ., 1, ., 60.931.00.5050yesno
Q9FVG7METK2_PINCO2, ., 5, ., 1, ., 60.931.00.5089N/Ano
Q4H1G3METK2_BETVU2, ., 5, ., 1, ., 60.961.00.5089N/Ano
Q944U4METK_DENCR2, ., 5, ., 1, ., 60.9151.00.5063N/Ano
Q9AT55METK2_ELAUM2, ., 5, ., 1, ., 60.9451.00.5089N/Ano
Q9AT56METK1_ELAUM2, ., 5, ., 1, ., 60.9551.00.5089N/Ano
P93438METK2_ORYSJ2, ., 5, ., 1, ., 60.94470.9950.5050yesno
Q9FPL6METK2_SUASA2, ., 5, ., 1, ., 60.9351.00.5063N/Ano
P48498METK1_PETHY2, ., 5, ., 1, ., 60.921.00.5128N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.60.914
3rd Layer2.5.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
PLN02243 386 PLN02243, PLN02243, S-adenosylmethionine synthase 1e-159
PTZ00104 398 PTZ00104, PTZ00104, S-adenosylmethionine synthase; 1e-142
PRK05250 384 PRK05250, PRK05250, S-adenosylmethionine synthetas 1e-120
COG0192 388 COG0192, MetK, S-adenosylmethionine synthetase [Co 1e-114
TIGR01034 377 TIGR01034, metK, S-adenosylmethionine synthetase 1e-105
PRK12459 386 PRK12459, PRK12459, S-adenosylmethionine synthetas 1e-93
pfam00438100 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine s 2e-64
pfam02772119 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine s 3e-53
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase Back     alignment and domain information 
 Score =  443 bits (1142), Expect = e-159
 Identities = 188/200 (94%), Positives = 193/200 (96%)

Query: 1   METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
           METFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 61  ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
           A VDYEKIVRDTCR IGF SDDVGLDAD CKVLVNIEQQSPDIAQGVHGHLTK+ EEIGA
Sbjct: 61  AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
           GDQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKNGTCPWLRPDGKTQVTVEY NE 
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180

Query: 181 GAMVPVRVHTVLISTQHDET 200
           GAMVP+RVHTVLISTQHDET
Sbjct: 181 GAMVPIRVHTVLISTQHDET 200

Length = 386
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase Back     alignment and domain information
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase, N-terminal domain Back     alignment and domain information
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 200
COG0192 388 MetK S-adenosylmethionine synthetase [Coenzyme met 100.0
PLN02243 386 S-adenosylmethionine synthase 100.0
KOG1506 383 consensus S-adenosylmethionine synthetase [Coenzym 100.0
PRK12459 386 S-adenosylmethionine synthetase; Provisional 100.0
PRK05250 384 S-adenosylmethionine synthetase; Validated 100.0
PTZ00104 398 S-adenosylmethionine synthase; Provisional 100.0
TIGR01034 377 metK S-adenosylmethionine synthetase. Tandem isozy 100.0
PF00438100 S-AdoMet_synt_N: S-adenosylmethionine synthetase, 100.0
PF02772120 S-AdoMet_synt_M: S-adenosylmethionine synthetase, 100.0
PF01941 396 AdoMet_Synthase: S-adenosylmethionine synthetase ( 97.81
PRK04439 399 S-adenosylmethionine synthetase; Provisional 97.59
COG1812 400 MetK Archaeal S-adenosylmethionine synthetase [Ami 95.98
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-98  Score=678.27  Aligned_cols=195  Identities=62%  Similarity=0.974  Sum_probs=186.6

Q ss_pred             CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843            2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD   81 (200)
Q Consensus         2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~   81 (200)
                      ..+|||||||+|||||||||||||||||+||+|||+|||||||+++||+|+|+|||+|+++||+++++|++|++|||+++
T Consensus         3 ~~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~   82 (388)
T COG0192           3 KYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTES   82 (388)
T ss_pred             ccceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCcc
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843           82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC  161 (200)
Q Consensus        82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~  161 (200)
                      ++|||+++|.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++|++++||+|.+
T Consensus        83 ~~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l  161 (388)
T COG0192          83 DYGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGEL  161 (388)
T ss_pred             ccCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999997533 345799999999999999999999999999999999999999999999


Q ss_pred             CcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843          162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET  200 (200)
Q Consensus       162 ~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~  200 (200)
                      ||||||+||||||+|+++ +  +|+||+|||+||||+++
T Consensus       162 ~~LrpD~KsQVtv~Y~~~-~--~p~~idtIvvStQH~~~  197 (388)
T COG0192         162 PWLRPDAKSQVTVEYEDN-G--KPVRIDTIVVSTQHDPD  197 (388)
T ss_pred             cccCCCcceeEEEEEcCC-C--CceeEEEEEEEeccCcc
Confidence            999999999999999863 4  89999999999999874

>PLN02243 S-adenosylmethionine synthase Back     alignment and domain information
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK12459 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>PRK05250 S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>PTZ00104 S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>TIGR01034 metK S-adenosylmethionine synthetase Back     alignment and domain information
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea Back     alignment and domain information
>PRK04439 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
2p02_A 396 Crystal Structure Of The Alpha Subunit Of Human S- 2e-75
2obv_A 384 Crystal Structure Of The Human S-adenosylmethionine 7e-71
1qm4_A 396 Methionine Adenosyltransferase Complexed With A L-M 6e-70
3so4_A 415 Methionine-Adenosyltransferase From Entamoeba Histo 8e-68
1fug_A 383 S-adenosylmethionine Synthetase Length = 383 1e-56
3rv2_A 407 Crystal Structure Of S-Adenosylmethionine Synthetas 3e-55
3iml_A 399 Crystal Structure Of S-Adenosylmethionine Synthetas 8e-55
3s82_A 407 Structure Of A S-Adenosylmethionine Synthetase From 1e-54
1xrb_A 383 S-adenosylmethionine Synthetase (mat, Atp: L-methio 5e-54
3tde_A 408 Crystal Structure Of S-Adenosylmethionine Synthetas 7e-54
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S- Adenosylmethionine Synthetase 2 Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  277 bits (709), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 157/197 (79%), Gaps = 2/197 (1%)
Query: 3   TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN 62
           TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+++ GEIT++A 
Sbjct: 18  TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 63  VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGD 122
           VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGV  HL +  E+IGAGD
Sbjct: 78  VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGAGD 135
Query: 123 QGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
           QG MFGYATDET E MPL+ VLA KL AKL E+R+NGT PWLRPD KTQVTV+Y  + GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 183 MVPVRVHTVLISTQHDE 199
           ++P+RVHT++IS QHDE
Sbjct: 196 VLPIRVHTIVISVQHDE 212
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine Synthetase 1 In Complex With The Product Length = 384 Back     alignment and structure
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A L-Methionine Analogous Length = 396 Back     alignment and structure
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica Length = 415 Back     alignment and structure
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase Length = 383 Back     alignment and structure
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Mycobacterium Marinum Length = 407 Back     alignment and structure
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Burkholderia Pseudomallei Length = 399 Back     alignment and structure
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From Mycobacterium Avium Length = 407 Back     alignment and structure
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S- Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues Are Replaced With Selenomethionine Residues (mse) Length = 383 Back     alignment and structure
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase Rv1392 From Mycobacterium Tuberculosis Length = 408 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
2p02_A 396 S-adenosylmethionine synthetase isoform type-2; st 1e-142
3so4_A 415 Methionine-adenosyltransferase; structural genomic 1e-141
3iml_A 399 S-adenosylmethionine synthetase; structural genomi 1e-134
3s82_A 407 S-adenosylmethionine synthase; seattle structural 1e-131
1p7l_A 383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 1e-129
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Length = 396 Back     alignment and structure
 Score =  400 bits (1030), Expect = e-142
 Identities = 131/199 (65%), Positives = 157/199 (78%), Gaps = 2/199 (1%)

Query: 1   METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
             TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+++ GEIT++
Sbjct: 16  EGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSR 75

Query: 61  ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
           A VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGV  HL +  E+IGA
Sbjct: 76  AAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGA 133

Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
           GDQG MFGYATDET E MPL+ VLA KL AKL E+R+NGT PWLRPD KTQVTV+Y  + 
Sbjct: 134 GDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDR 193

Query: 181 GAMVPVRVHTVLISTQHDE 199
           GA++P+RVHT++IS QHDE
Sbjct: 194 GAVLPIRVHTIVISVQHDE 212
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Length = 415 Back     alignment and structure
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Length = 399 Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Length = 407 Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Length = 383 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
3so4_A 415 Methionine-adenosyltransferase; structural genomic 100.0
3iml_A 399 S-adenosylmethionine synthetase; structural genomi 100.0
2p02_A 396 S-adenosylmethionine synthetase isoform type-2; st 100.0
3s82_A 407 S-adenosylmethionine synthase; seattle structural 100.0
1p7l_A 383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 100.0
4hpv_A 407 S-adenosylmethionine synthase; structural genomics 97.26
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=6.3e-102  Score=707.58  Aligned_cols=197  Identities=61%  Similarity=1.005  Sum_probs=181.1

Q ss_pred             CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843            2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD   81 (200)
Q Consensus         2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~   81 (200)
                      ++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++
T Consensus        21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~  100 (415)
T 3so4_A           21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT  100 (415)
T ss_dssp             -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred             cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843           82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC  161 (200)
Q Consensus        82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~  161 (200)
                      ++|||++||+|+++|++|||||||||+.+  +..+++||||||||||||||||||||||||+|||||++||+++||+|++
T Consensus       101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l  178 (415)
T 3so4_A          101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL  178 (415)
T ss_dssp             GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999964  2235799999999999999999999999999999999999999999999


Q ss_pred             CcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843          162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET  200 (200)
Q Consensus       162 ~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~  200 (200)
                      |||||||||||||+|++++|+++|+||+||||||||+++
T Consensus       179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~  217 (415)
T 3so4_A          179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADN  217 (415)
T ss_dssp             TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTT
T ss_pred             CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCC
Confidence            999999999999999976678899999999999999874
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Back     alignment and structure
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Back     alignment and structure
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 200
d2p02a1110 d.130.1.1 (A:38-147) S-adenosylmethionine syntheta 8e-52
d1mxaa1102 d.130.1.1 (A:1-102) S-adenosylmethionine synthetas 2e-46
d2p02a2126 d.130.1.1 (A:148-273) S-adenosylmethionine synthet 1e-38
d1mxaa2124 d.130.1.1 (A:108-231) S-adenosylmethionine synthet 2e-34
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 110 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

 Score =  160 bits (406), Expect = 8e-52
 Identities = 70/106 (66%), Positives = 84/106 (79%)

Query: 3   TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN 62
           TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+++ GEIT++A 
Sbjct: 2   TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 61

Query: 63  VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVH 108
           VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGVH
Sbjct: 62  VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH 107
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 102 Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
d2p02a1110 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa1102 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a2126 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa2124 S-adenosylmethionine synthetase {Escherichia coli 100.0
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

Probab=100.00  E-value=2.5e-59  Score=362.92  Aligned_cols=108  Identities=65%  Similarity=1.042  Sum_probs=106.4

Q ss_pred             CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843            2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD   81 (200)
Q Consensus         2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~   81 (200)
                      ++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||+|++++|+++|||++|++|||+++
T Consensus         1 g~~lfTsEsVs~GHPDKicDqISDailD~~l~~Dp~arVA~Et~v~~~~V~v~GEitt~~~vd~~~IvR~vi~~IGY~~~   80 (110)
T d2p02a1           1 GTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDS   80 (110)
T ss_dssp             CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred             CceEEEecccCCCCCcHHHHHHHhHHHHHHHhhCcccceeEEEEecCCEEEEEEEecccccccHHHHHHHhhhccCEecC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEEEEeccCChhhhhcccc
Q 044843           82 DVGLDADHCKVLVNIEQQSPDIAQGVHG  109 (200)
Q Consensus        82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~  109 (200)
                      ++|||+++|.|++.|++|||||+|||+.
T Consensus        81 ~~gfd~~t~~V~~~I~~QSpDIa~GVd~  108 (110)
T d2p02a1          81 SKGFDYKTCNVLVALEQQSPDIAQGVHL  108 (110)
T ss_dssp             GGTEETTTSEEEEEEECCCHHHHHHHTT
T ss_pred             cCCccccceEEEeeccCCChHHHhhccC
Confidence            9999999999999999999999999985
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure