Citrus Sinensis ID: 044872
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 604 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SR82 | 685 | Putative pentatricopeptid | yes | no | 0.990 | 0.872 | 0.591 | 0.0 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 1.0 | 0.815 | 0.437 | 1e-157 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.998 | 0.868 | 0.415 | 1e-149 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 1.0 | 0.818 | 0.407 | 1e-148 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 1.0 | 0.693 | 0.404 | 1e-143 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 1.0 | 0.844 | 0.390 | 1e-140 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.867 | 0.880 | 0.455 | 1e-140 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.978 | 0.818 | 0.390 | 1e-138 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.978 | 0.896 | 0.421 | 1e-138 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.995 | 0.758 | 0.4 | 1e-137 |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/604 (59%), Positives = 462/604 (76%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+I GFV+N F ++ + S+R G FTFP VLKAC R +LG+ HSL+VK G
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
+ D TSLL++Y G L DA K+FD+IPD++VV+WTA+ SGY G EAI++F+
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+++ G+KPDS+ IV+VL+AC +GDL + +WI Y+ E +N FV T+LV+LYAKCG
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCG 261
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
MEKAR VFD M EKDIV+WS+MIQGYASN FPKE +++F M +ENLKP+ +++VG LS
Sbjct: 262 KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
+CASLGAL+LG W S ++R+EFL+N + LIDMYAKCG MA+ +VF+EMK+KD V+
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
NA +SGL+ NG+VK++F VFGQ EK GI P+G+TF+GLLCGC HAGL+ +G +FFN++S
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
V++L +EHYGCMVDL GR+G LD+A+ LI MPM PNAIVWGALL+GCRL K T LA
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E VL +LIALEPWN+GNYV LSNIYS +W++AA++R MM KG++KI G SW+E++G
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFL D SHPLS+KIY+KL++L +++ GFVPTT+ V FD+EEEEK+ L HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKL 621
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+A GLI+T VIR+ KNLRVCGDCHE +KLISKIT REI+VRDNNRFHCF GSCSC
Sbjct: 622 AVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681
Query: 601 KDFW 604
D+W
Sbjct: 682 NDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust.
Identities = 279/637 (43%), Positives = 407/637 (63%), Gaps = 33/637 (5%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
M RG + A++ Y M + G LP ++TFPFVLK+CA+ F+ G + H ++K G
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 164
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFD------------------------------- 89
D D +V TSL+++YV G L DA KVFD
Sbjct: 165 CDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 224
Query: 90 DIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLST 149
+IP K+VVSW A+ISGY GN +EA+ +F+ ++ ++PD ++V V++AC Q G +
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 284
Query: 150 AKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYAS 209
+ +H ++++ G G N+ + +L+DLY+KCG +E A +F+++P KD++SW+++I GY
Sbjct: 285 GRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTH 344
Query: 210 NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFME-RNEFLSNPV 268
KEAL +F M R P TM+ +L ACA LGA+++G W +++ R + ++N
Sbjct: 345 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNAS 404
Query: 269 -LGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327
L T+LIDMYAKCG + A +VF + K WNA++ G +M+G +F +F ++ K
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 464
Query: 328 GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE 387
GIQP+ TFVGLL C+H+G++D GR F +M++ + +TP +EHYGCM+DLLG SG E
Sbjct: 465 GIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKE 524
Query: 388 AHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447
A E+I M MEP+ ++W +LL C++H +L E LI +EP N G+YVLLSNIY++
Sbjct: 525 AEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYAS 584
Query: 448 SHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATK 507
+ +WN+ AK R+++ DKG++K+ GCS +E+D VVHEF++GD HP + +IY L+E+
Sbjct: 585 AGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVL 644
Query: 508 LKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDC 567
L+ AGFVP T VL ++EEE K+ L HSEKLA+AFGLI+T P + I KNLRVC +C
Sbjct: 645 LEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNC 704
Query: 568 HEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
HEA KLISKI REII RD RFH F +G CSC D+W
Sbjct: 705 HEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/606 (41%), Positives = 384/606 (63%), Gaps = 3/606 (0%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+IRG+ N+ FQ A+ Y++M+ P +FTFP +LKAC+ Q+G H+ + + G
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFD--DIPDKNVVSWTAIISGYINEGNLEEAINM 118
D D FV+ L+ LY C L A VF+ +P++ +VSWTAI+S Y G EA+ +
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 119 FRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK 178
F ++ +KPD ++V VL A T L DL + IH V + G + SL +YAK
Sbjct: 210 FSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAK 269
Query: 179 CGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGV 238
CG + A+ +FD+M +++ W++MI GYA NG+ +EA+DMF+ M ++++P+ ++
Sbjct: 270 CGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSA 329
Query: 239 LSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ 298
+SACA +G+LE ++ R+++ + + + LIDM+AKCG + A VF D+D
Sbjct: 330 ISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDV 389
Query: 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNS 358
VVW+A++ G ++G + A ++ +E+ G+ PN TF+GLL C H+G+V EG FFN
Sbjct: 390 VVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNR 449
Query: 359 MSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTD 418
M+ + P +HY C++DLLGR+G LD+A+E+IK MP++P VWGALL+ C+ H+ +
Sbjct: 450 MAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508
Query: 419 LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVD 478
L E+ QL +++P N+G+YV LSN+Y+A+ W+ A++R M +KG+ K GCSWVEV
Sbjct: 509 LGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568
Query: 479 GVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSE 538
G + F VGD SHP E+I +++ + ++LK GFV D L D+ +EE + L HSE
Sbjct: 569 GRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSE 628
Query: 539 KLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSC 598
++A+A+GLI+T +RI KNLR C +CH A KLISK+ REI+VRD NRFH F +G C
Sbjct: 629 RIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVC 688
Query: 599 SCKDFW 604
SC D+W
Sbjct: 689 SCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/638 (40%), Positives = 393/638 (61%), Gaps = 34/638 (5%)
Query: 1 MIRGFVSN-DCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKA 59
+IR + S D F + + P +TFPF++KA A LG H + VK+
Sbjct: 101 LIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKS 160
Query: 60 GLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMF 119
+ D FV SL++ Y CG L A KVF I +K+VVSW ++I+G++ +G+ ++A+ +F
Sbjct: 161 AVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELF 220
Query: 120 RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179
+++ +K ++V VL+AC ++ +L + + Y+ E N+ +A +++D+Y KC
Sbjct: 221 KKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKC 280
Query: 180 GNMEKARRVFD-------------------------------QMPEKDIVSWSSMIQGYA 208
G++E A+R+FD MP+KDIV+W+++I Y
Sbjct: 281 GSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYE 340
Query: 209 SNGFPKEALDMFYNMQ-RENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNP 267
NG P EAL +F+ +Q ++N+K T+V LSACA +GALELG W S+++++ N
Sbjct: 341 QNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNF 400
Query: 268 VLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327
+ + LI MY+KCG + ++ +VF ++ +D VW+A++ GL+M+G A +F ++++
Sbjct: 401 HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEA 460
Query: 328 GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE 387
++PNG TF + C C+H GLVDE F+ M + + P +HY C+VD+LGRSG L++
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEK 520
Query: 388 AHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447
A + I++MP+ P+ VWGALL C++H +LAE +L+ LEP N G +VLLSNIY+
Sbjct: 521 AVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAK 580
Query: 448 SHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATK 507
KW + +++R M G++K GCS +E+DG++HEFL GDN+HP+SEK+Y KL E+ K
Sbjct: 581 LGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEK 640
Query: 508 LKAAGFVPTTDHVLFDIEEEE-KQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGD 566
LK+ G+ P VL IEEEE K+ L HSEKLA+ +GLI+T VIR+ KNLRVCGD
Sbjct: 641 LKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGD 700
Query: 567 CHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
CH KLIS++ REIIVRD RFH F G CSC DFW
Sbjct: 701 CHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/605 (40%), Positives = 377/605 (62%), Gaps = 1/605 (0%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+I G+VSN + + + M G T V CA LG HS+ VKA
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC 326
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
++ +LL++Y CG L A VF ++ D++VVS+T++I+GY EG EA+ +F
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+ G+ PD +++ VL C + L K +H ++ E G ++FV+ +L+D+YAKCG
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMF-YNMQRENLKPEYYTMVGVL 239
+M++A VF +M KDI+SW+++I GY+ N + EAL +F ++ + P+ T+ VL
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506
Query: 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299
ACASL A + G ++ RN + S+ + +L+DMYAKCG + A +F ++ KD V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566
Query: 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359
W +++G M+G+ K A +F Q+ + GI+ + +FV LL C+H+GLVDEG +FFN M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626
Query: 360 SRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDL 419
+ P +EHY C+VD+L R+G L +A+ I++MP+ P+A +WGALL GCR+H L
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686
Query: 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479
AE V ++ LEP N+G YVL++NIY+ + KW ++R +G +G++K GCSW+E+ G
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746
Query: 480 VVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEK 539
V+ F+ GD+S+P +E I + L ++ ++ G+ P T + L D EE EK+ L HSEK
Sbjct: 747 RVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEK 806
Query: 540 LALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCS 599
LA+A G+I++ +IR+ KNLRVCGDCHE K +SK+T REI++RD+NRFH F +G CS
Sbjct: 807 LAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCS 866
Query: 600 CKDFW 604
C+ FW
Sbjct: 867 CRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/640 (39%), Positives = 369/640 (57%), Gaps = 36/640 (5%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+IR F F A+ + MR G P + FP VLK+C D + G H IV+ G
Sbjct: 76 VIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135
Query: 61 LDCDEFVKTSLLNLY---------VHCGYLADAL-------------------------- 85
+DCD + +L+N+Y + G + D +
Sbjct: 136 MDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSV 195
Query: 86 -KVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQL 144
+VF+ +P K+VVS+ II+GY G E+A+ M R + LKPDSF++ VL ++
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255
Query: 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMI 204
D+ K IHGYV G +V++ +SLVD+YAK +E + RVF ++ +D +SW+S++
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315
Query: 205 QGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFL 264
GY NG EAL +F M +KP V+ ACA L L LG ++ R F
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375
Query: 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQL 324
SN + + L+DMY+KCG + A K+F M D+V W A++ G +++G+ A +F ++
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEM 435
Query: 325 EKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ 384
++ G++PN FV +L C+H GLVDE +FNSM++V+ L +EHY + DLLGR+G+
Sbjct: 436 KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGK 495
Query: 385 LDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444
L+EA+ I M +EP VW LL+ C +HK +LAE V ++ ++ N G YVL+ N+
Sbjct: 496 LEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNM 555
Query: 445 YSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDEL 504
Y+++ +W + AK+R M KG++K CSW+E+ H F+ GD SHP +KI L +
Sbjct: 556 YASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAV 615
Query: 505 ATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVC 564
+++ G+V T VL D++EE K+ L HSE+LA+AFG+I T P IR+ KN+R+C
Sbjct: 616 MEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRIC 675
Query: 565 GDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
DCH AIK ISKIT REIIVRDN+RFH F G+CSC D+W
Sbjct: 676 TDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/527 (45%), Positives = 348/527 (66%), Gaps = 3/527 (0%)
Query: 81 LADALKVFDDIPDK-NVVSWTAIISGYINEGNLEEAINMFRRLLHRGL-KPDSFSIVRVL 138
++ A KVF I NV W +I GY GN A +++R + GL +PD+ + ++
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 139 TACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIV 198
A T + D+ + IH V +G G ++V SL+ LYA CG++ A +VFD+MPEKD+V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188
Query: 199 SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFM 258
+W+S+I G+A NG P+EAL ++ M + +KP+ +T+V +LSACA +GAL LG +M
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248
Query: 259 ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAF 318
+ N L+D+YA+CGR+ +A +F EM DK+ V W +++ GL++NG+ K A
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAI 308
Query: 319 GVFGQLEKC-GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377
+F +E G+ P TFVG+L C+H G+V EG ++F M + + P IEH+GCMVD
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368
Query: 378 LLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437
LL R+GQ+ +A+E IKSMPM+PN ++W LL C +H +DLAE Q++ LEP +SG+
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGD 428
Query: 438 YVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKI 497
YVLLSN+Y++ +W+D KIR M G++K+ G S VEV VHEFL+GD SHP S+ I
Sbjct: 429 YVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAI 488
Query: 498 YSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRI 557
Y+KL E+ +L++ G+VP +V D+EEEEK+ + HSEK+A+AF LI+T + I +
Sbjct: 489 YAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITV 548
Query: 558 AKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
KNLRVC DCH AIKL+SK+ REI+VRD +RFH F GSCSC+D+W
Sbjct: 549 VKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/628 (39%), Positives = 378/628 (60%), Gaps = 37/628 (5%)
Query: 14 AIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLN 73
I FY +R+ G F+F +LKA ++ G+ H + K CD FV+T ++
Sbjct: 95 TILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMD 154
Query: 74 LYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFS 133
+Y CG + A VFD++ ++VV+W +I Y G ++EA +F + + PD
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214
Query: 134 IVRVLTACTQLGDLSTAKWIHGYVNE-----------------AGKG------------- 163
+ +++AC + G++ + I+ ++ E AG G
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMS 274
Query: 164 -RNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYN 222
RN+FV+T++V Y+KCG ++ A+ +FDQ +KD+V W++MI Y + +P+EAL +F
Sbjct: 275 VRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE 334
Query: 223 MQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGR 282
M +KP+ +M V+SACA+LG L+ W S + N S + LI+MYAKCG
Sbjct: 335 MCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGG 394
Query: 283 MAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342
+ VF +M ++ V W+++++ LSM+G A +F ++++ ++PN TFVG+L G
Sbjct: 395 LDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYG 454
Query: 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAI 402
C+H+GLV+EG++ F SM+ +++TP +EHYGCMVDL GR+ L EA E+I+SMP+ N +
Sbjct: 455 CSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVV 514
Query: 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462
+WG+L++ CR+H + +L + +++ LEP + G VL+SNIY+ +W D IR +M
Sbjct: 515 IWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVME 574
Query: 463 DKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLF 522
+K + K +G S ++ +G HEFL+GD H S +IY+KLDE+ +KLK AG+VP VL
Sbjct: 575 EKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLV 634
Query: 523 DIEEEEKQYFLACHSEKLALAFGLITTAPKD------VIRIAKNLRVCGDCHEAIKLISK 576
D+EEEEK+ + HSEKLAL FGL+ ++ VIRI KNLRVC DCH KL+SK
Sbjct: 635 DVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSK 694
Query: 577 ITGREIIVRDNNRFHCFIEGSCSCKDFW 604
+ REIIVRD RFHC+ G CSC+D+W
Sbjct: 695 VYEREIIVRDRTRFHCYKNGLCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/600 (42%), Positives = 372/600 (62%), Gaps = 9/600 (1%)
Query: 14 AIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLN 73
A+ ++SMR PT +FP +KAC+ D G ++H G D FV ++L+
Sbjct: 60 ALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIV 119
Query: 74 LYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLL------HRGL 127
+Y CG L DA KVFD+IP +N+VSWT++I GY GN +A+++F+ LL +
Sbjct: 120 MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM 179
Query: 128 KPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGN--MEKA 185
DS +V V++AC+++ + IH +V + G R V V +L+D YAK G + A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239
Query: 186 RRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKP-EYYTMVGVLSACAS 244
R++FDQ+ +KD VS++S++ YA +G EA ++F + + + T+ VL A +
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 245 LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAV 304
GAL +G + R + ++GT++IDMY KCGR+ A K F MK+K+ W A+
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAM 359
Query: 305 VSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS 364
++G M+G+ A +F + G++PN TFV +L C+HAGL EG ++FN+M F
Sbjct: 360 IAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFG 419
Query: 365 LTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVL 424
+ P +EHYGCMVDLLGR+G L +A++LI+ M M+P++I+W +LLA CR+HK +LAE +
Sbjct: 420 VEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISV 479
Query: 425 NQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEF 484
+L L+ N G Y+LLS+IY+ + +W D ++R +M ++G+ K G S +E++G VH F
Sbjct: 480 ARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVF 539
Query: 485 LVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAF 544
L+GD HP EKIY L EL KL AG+V T V D++EEEK+ L HSEKLA+AF
Sbjct: 540 LIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAF 599
Query: 545 GLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
G++ T P + + KNLRVC DCH IKLISKI RE +VRD RFH F +G CSC D+W
Sbjct: 600 GIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/605 (40%), Positives = 362/605 (59%), Gaps = 4/605 (0%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPF-VLKACAREHDFQLGVRSHSLIVKA 59
MI G+ N+ + +I+ + + NE + T +L A A + +LG++ HSL K
Sbjct: 191 MISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKT 250
Query: 60 GLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMF 119
G ++V T ++LY CG + +F + ++V++ A+I GY + G E ++++F
Sbjct: 251 GCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLF 310
Query: 120 RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179
+ L+ G + S ++V ++ G L IHGY ++ + V+T+L +Y+K
Sbjct: 311 KELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKL 367
Query: 180 GNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVL 239
+E AR++FD+ PEK + SW++MI GY NG ++A+ +F MQ+ P T+ +L
Sbjct: 368 NEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCIL 427
Query: 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299
SACA LGAL LG W + +F S+ + T LI MYAKCG +A+A ++F M K++V
Sbjct: 428 SACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV 487
Query: 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359
WN ++SG ++G + A +F ++ GI P TF+ +L C+HAGLV EG + FNSM
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSM 547
Query: 360 SRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDL 419
+ P ++HY CMVD+LGR+G L A + I++M +EP + VW LL CR+HK T+L
Sbjct: 548 IHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNL 607
Query: 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479
A V +L L+P N G +VLLSNI+SA + AA +R + + K G + +E+
Sbjct: 608 ARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGE 667
Query: 480 VVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEK 539
H F GD SHP ++IY KL++L K++ AG+ P T+ L D+EEEE++ + HSE+
Sbjct: 668 TPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSER 727
Query: 540 LALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCS 599
LA+AFGLI T P IRI KNLRVC DCH KLISKIT R I+VRD NRFH F +G CS
Sbjct: 728 LAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCS 787
Query: 600 CKDFW 604
C D+W
Sbjct: 788 CGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 604 | ||||||
| 225439588 | 686 | PREDICTED: putative pentatricopeptide re | 0.986 | 0.868 | 0.746 | 0.0 | |
| 224140549 | 682 | predicted protein [Populus trichocarpa] | 0.996 | 0.882 | 0.718 | 0.0 | |
| 449440243 | 688 | PREDICTED: putative pentatricopeptide re | 0.980 | 0.860 | 0.701 | 0.0 | |
| 449530632 | 688 | PREDICTED: putative pentatricopeptide re | 0.980 | 0.860 | 0.701 | 0.0 | |
| 356542389 | 676 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.893 | 0.690 | 0.0 | |
| 357453927 | 678 | Pentatricopeptide repeat protein [Medica | 0.991 | 0.883 | 0.663 | 0.0 | |
| 15231970 | 685 | pentatricopeptide repeat-containing prot | 0.990 | 0.872 | 0.591 | 0.0 | |
| 297833632 | 685 | pentatricopeptide repeat-containing prot | 0.996 | 0.878 | 0.587 | 0.0 | |
| 224091072 | 619 | predicted protein [Populus trichocarpa] | 0.913 | 0.891 | 0.616 | 0.0 | |
| 108862088 | 692 | pentatricopeptide, putative, expressed [ | 0.973 | 0.849 | 0.546 | 0.0 |
| >gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/604 (74%), Positives = 513/604 (84%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MIRG VSNDCF AIEFY MR+EGFLP NFTFPFVLKACAR D QLGV+ H+L+VK G
Sbjct: 83 MIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGG 142
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
DCD FVKTSL+ LY CGYL DA KVFDDIPDKNVVSWTAIISGYI G EAI+MFR
Sbjct: 143 FDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFR 202
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
RLL L PDSF+IVRVL+ACTQLGDL++ +WIH + E G RNVFV TSLVD+YAKCG
Sbjct: 203 RLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCG 262
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
NMEKAR VFD MPEKDIVSW +MIQGYA NG PKEA+D+F MQREN+KP+ YT+VGVLS
Sbjct: 263 NMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLS 322
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
ACA LGALELG W S ++RNEFL NPVLGT LID+YAKCG M++A +VF+ MK+KD+VV
Sbjct: 323 ACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVV 382
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
WNA++SGL+MNGYVK++FG+FGQ+EK GI+P+GNTF+GLLCGCTHAGLVDEGR++FNSM
Sbjct: 383 WNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMY 442
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
R FSLTP IEHYGCMVDLLGR+G LDEAH+LI++MPME NAIVWGALL CR+H+ T LA
Sbjct: 443 RFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLA 502
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E L QLI LEPWNSGNYVLLSNIYSA+ KW++AAK+R M +K IQK GCSW+EVDG+
Sbjct: 503 ELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGI 562
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFLVGD HPLSEKIY+KLDEL K+K AG+VPTTD VLFDIEEEEK++FL CHSEKL
Sbjct: 563 VHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKL 622
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+AFGLI+ P VIR+ KNLRVCGDCH AIKLIS ITGREI VRDNNRFHCF EGSCSC
Sbjct: 623 AIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSC 682
Query: 601 KDFW 604
D+W
Sbjct: 683 NDYW 686
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/604 (71%), Positives = 504/604 (83%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MIRG V NDCFQ +IE Y+SMR EG P +FTFPFVLKACAR D +LGV+ HSL+VKAG
Sbjct: 79 MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAG 138
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
+ D FVK SL+NLY CG++ +A KVFDDIPDKN SWTA ISGY+ G EAI+MFR
Sbjct: 139 CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFR 198
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
RLL GL+PDSFS+V VL+AC + GDL + +WI Y+ E G RNVFVAT+LVD Y KCG
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCG 258
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
NME+AR VFD M EK+IVSWSSMIQGYASNG PKEALD+F+ M E LKP+ Y MVGVL
Sbjct: 259 NMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLC 318
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
+CA LGALELG WAS+ + NEFL N VLGT LIDMYAKCGRM +A +VFR M+ KD+VV
Sbjct: 319 SCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVV 378
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
WNA +SGL+M+G+VK A G+FGQ+EK GI+P+ NTFVGLLC CTHAGLV+EGR++FNSM
Sbjct: 379 WNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSME 438
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
VF+LTP IEHYGCMVDLLGR+G LDEAH+LIKSMPME NAIVWGALL GCRLH+ T L
Sbjct: 439 CVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLV 498
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E VL +LIALEPW+SGNYVLLSNIY+ASHKW +AAKIRS+M ++G++KI G SW+EVDGV
Sbjct: 499 EVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGV 558
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VH+FLVGD SHPLSEKIY+KL ELA LKAAG+VPTTDHVLFDIEEEEK++F+ CHSEKL
Sbjct: 559 VHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKL 618
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+AFGLI+TAP D I + KNLRVCGDCHEAIK IS+I GREIIVRDNNRFHCF +G CSC
Sbjct: 619 AVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSC 678
Query: 601 KDFW 604
KD+W
Sbjct: 679 KDYW 682
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/604 (70%), Positives = 504/604 (83%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MIRG VS DCF AI Y SMR GFLP NFT PFVLKACAR+ D +LG++ HSL+VKAG
Sbjct: 85 MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
D D FVKTSLL+LYV C DALKVFDDIPDKNVVSWTAII+GYI+ G+ EAI F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+LL GLKPDSFS+V+VL AC +LGD ++ +WI Y++++G GRNVFVATSL+D+Y KCG
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG 264
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
N+E+A +F MPEKDIVSWS+MIQGYA NG P++ALD+F+ MQ ENLKP+ YTMVGVLS
Sbjct: 265 NLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLS 324
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
ACA+LGAL+LG+WASS M+RNEFLSNPVLGT LIDMY+KCG + QA ++F MK KD+VV
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVV 384
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
WNA++ GLSMNG+ K F +F +EK GI+P+ NTF+GLLCGCTH G V+EGRQFFN+M
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
RVFSLTP IEHYGCMVDLLGR+G L+EAH+LI +MPM+PNA+VWGALL GC+LHK T LA
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E VL +LI LEPWNSGNYV LSNIYS +H+W +A KIRS M ++ IQKIR CSW+E+DG+
Sbjct: 505 EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGI 564
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFLVGD SH LSEKIY+KLDEL +LKA G VPTT+ VLFDIEEEEK++FL HSEKL
Sbjct: 565 VHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKL 624
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+AFGLI + P VIR+ KNLRVCGDCH+AIKLISKIT REII+RD NRFH FI+GSCSC
Sbjct: 625 AVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSC 684
Query: 601 KDFW 604
+D+W
Sbjct: 685 RDYW 688
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/604 (70%), Positives = 504/604 (83%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MIRG VS DCF AI Y SMR GFLP NFT PFVLKACAR+ D +LG++ HSL+VKAG
Sbjct: 85 MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
D D FVKTSLL+LYV C DALKVFDDIPDKNVVSWTAII+GYI+ G+ EAI F+
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+LL GLKPDSFS+V+VL AC +LGD ++ +WI Y++++G GRNVFVATSL+D+Y KCG
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG 264
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
N+E+A +F MPEKDIVSWS+MIQGYA NG P++ALD+F+ MQ ENLKP+ YTMVGVLS
Sbjct: 265 NLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLS 324
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
ACA+LGAL+LG+WASS M+RNEFLSNPVLGT LIDMY+KCG + QA ++F MK KD+VV
Sbjct: 325 ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVV 384
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
WNA++ GLSMNG+ K F +F +EK GI+P+ NTF+GLLCGCTH G V+EGRQFFN+M
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
RVFSLTP IEHYGCMVDLLGR+G L+EAH+LI +MPM+PNA+VWGALL GC+LHK T LA
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E VL +LI LEPWNSGNYV LSNIYS +H+W +A KIRS M ++ IQKIR CSW+E+DG+
Sbjct: 505 EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGI 564
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFLVGD SH LSEKIY+KLDEL +LKA G VPTT+ VLFDIEEEEK++FL HSEKL
Sbjct: 565 VHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKL 624
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+AFGLI + P VIR+ KNLRVCGDCH+AIKLISKIT REII+RD NRFH FI+GSCSC
Sbjct: 625 AVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSC 684
Query: 601 KDFW 604
+D+W
Sbjct: 685 RDYW 688
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/605 (69%), Positives = 497/605 (82%), Gaps = 1/605 (0%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAR-EHDFQLGVRSHSLIVKA 59
+IRG VSND F+ A+ Y SMR GF P NFTFPFVLKAC R H F +G+ HSL++K
Sbjct: 72 LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131
Query: 60 GLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMF 119
G D D FVKT L+ LY G+L DA KVFD+IP+KNVVSWTAII GYI G EA+ +F
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLF 191
Query: 120 RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179
R LL GL+PDSF++VR+L AC+++GDL++ +WI GY+ E+G NVFVATSLVD+YAKC
Sbjct: 192 RGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKC 251
Query: 180 GNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVL 239
G+ME+ARRVFD M EKD+V WS++IQGYASNG PKEALD+F+ MQREN++P+ Y MVGV
Sbjct: 252 GSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVF 311
Query: 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299
SAC+ LGALELG WA M+ +EFLSNPVLGT LID YAKCG +AQA +VF+ M+ KD V
Sbjct: 312 SACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCV 371
Query: 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359
V+NAV+SGL+M G+V AFGVFGQ+ K G+QP+GNTFVGLLCGCTHAGLVD+G ++F+ M
Sbjct: 372 VFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGM 431
Query: 360 SRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDL 419
S VFS+TP IEHYGCMVDL R+G L EA +LI+SMPME N+IVWGALL GCRLHK T L
Sbjct: 432 SSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQL 491
Query: 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479
AEHVL QLI LEPWNSG+YVLLSNIYSASH+W++A KIRS + KG+QK+ GCSWVEVDG
Sbjct: 492 AEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDG 551
Query: 480 VVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEK 539
VVHEFLVGD SHPLS KIY KL+ L L+ AG+ PTT+ VLFD+EEEEK+YFL CHSEK
Sbjct: 552 VVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEK 611
Query: 540 LALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCS 599
LA+AF LI+T KDVIR+ KNLRVCGDCHEAIKL+SK+TGREIIVRDNNRFH F EGSCS
Sbjct: 612 LAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCS 671
Query: 600 CKDFW 604
C+D+W
Sbjct: 672 CRDYW 676
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/604 (66%), Positives = 480/604 (79%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MIRG VS D F +A+ Y SM +P +FTF FVLKACAR + F LGV HSL+ K G
Sbjct: 75 MIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTG 134
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
DCD FVKT+++ Y CG+L DA KVFDD+ KNVVSWT +I G I G EA+++FR
Sbjct: 135 FDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFR 194
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
LL GL+PD F IVRVL AC +LGDL + +WI + E G RNVFVATSLVD+Y KCG
Sbjct: 195 GLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCG 254
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
+ME+AR VFD M EKDIV WS+MIQGYASNG P+EA+++F+ M++ N++P+ Y MVG LS
Sbjct: 255 SMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALS 314
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
+CASLGALELG WA M EFLSNPVLGT+LID YAKCG M +A V++ MK+KD+VV
Sbjct: 315 SCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVV 374
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
+NAV+SGL+M G V AFGVFGQ+ K GI PN +TFVGLLCGCTHAGLVD+GR +FNSMS
Sbjct: 375 FNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMS 434
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
FS+TP IEHYGCMVDLL R+G LDEAH LIK MPM+ N IVWG+LL GCRLH++T LA
Sbjct: 435 HDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLA 494
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
EHVL QLI LEPWNSG+YVLLSNIYSAS +W++A KIRS + +KG+QK+ G SWVEVDGV
Sbjct: 495 EHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGV 554
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFLVGD SHPLS+KIY KL+ L LK AG+ PTT+ VLFD+EEEEK++FL CHSEKL
Sbjct: 555 VHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKL 614
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+AF LI+T K VIR+ KNLRVCGDCHEAIK ISK+TGREI++RDNNRFHCF +G+CSC
Sbjct: 615 AVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSC 674
Query: 601 KDFW 604
+D+W
Sbjct: 675 RDYW 678
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g08820 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana] gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana] gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/604 (59%), Positives = 462/604 (76%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+I GFV+N F ++ + S+R G FTFP VLKAC R +LG+ HSL+VK G
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
+ D TSLL++Y G L DA K+FD+IPD++VV+WTA+ SGY G EAI++F+
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+++ G+KPDS+ IV+VL+AC +GDL + +WI Y+ E +N FV T+LV+LYAKCG
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCG 261
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
MEKAR VFD M EKDIV+WS+MIQGYASN FPKE +++F M +ENLKP+ +++VG LS
Sbjct: 262 KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
+CASLGAL+LG W S ++R+EFL+N + LIDMYAKCG MA+ +VF+EMK+KD V+
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
NA +SGL+ NG+VK++F VFGQ EK GI P+G+TF+GLLCGC HAGL+ +G +FFN++S
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
V++L +EHYGCMVDL GR+G LD+A+ LI MPM PNAIVWGALL+GCRL K T LA
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E VL +LIALEPWN+GNYV LSNIYS +W++AA++R MM KG++KI G SW+E++G
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFL D SHPLS+KIY+KL++L +++ GFVPTT+ V FD+EEEEK+ L HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKL 621
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+A GLI+T VIR+ KNLRVCGDCHE +KLISKIT REI+VRDNNRFHCF GSCSC
Sbjct: 622 AVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681
Query: 601 KDFW 604
D+W
Sbjct: 682 NDYW 685
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/604 (58%), Positives = 464/604 (76%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+I GFV+N F ++ + S+R G FTFP VLKAC R + +LG+ HSL+VK G
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCG 141
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
+ D TSLL++Y G L DA KVF++IP+++VV+WTA+ SGY G EAI++F+
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFK 201
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+++ G++PDS+ IV+VL+AC +GDL + +WI ++ E +N FV T+LV+LYAKCG
Sbjct: 202 KMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCG 261
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
MEKAR VFD M EKDIV+WS+MIQGYASN FPKE ++ F M +ENLKP+ +++VG LS
Sbjct: 262 KMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLS 321
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
+CASLGAL+LG W S ++R+EFL+N + LIDMYAKCG MA+ +VF+EMK+KD V+
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
NA +SGL+ NG+VK++F VFGQ EK GI P+G+TF+GLLCGC HAGL+ +G +FFN++S
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
V++L +EHYGCMVDL GR+G LD+A+ LI MPM PNAIVWGALL+GCRL K T LA
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E VL +LIALEPWN+GNYV LSNIYS S +W++AA++R MM KG++KI G SW+E++G
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGT 561
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFL D SHPLS+KIY+KL++L +++ GFVPTT+ V FD+E+EEK+ L HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKL 621
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+AFGLI+T VIR+ KNLRVCGDCHE +KLISKIT REI+VRDNNRFHCF GSCSC
Sbjct: 622 AVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681
Query: 601 KDFW 604
D+W
Sbjct: 682 NDYW 685
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa] gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/590 (61%), Positives = 437/590 (74%), Gaps = 38/590 (6%)
Query: 53 HSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNL 112
H+ +++ GLD D ++ +L + G + ++F + N+ + +I G + +
Sbjct: 30 HAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSF 89
Query: 113 EEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSL 172
+E+I ++ + GL PDSF+ +L AC +L D +HG V +AG + FV TSL
Sbjct: 90 QESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSL 149
Query: 173 VDLYAKCGNMEKARRVFDQMPEK------------------------------------- 195
V LY KCG ++ A +VFD +PEK
Sbjct: 150 VSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLE 209
Query: 196 -DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWA 254
DIVSWSSMIQGYASNG PKEALD+F+ M E +P+ Y MVGVL ACA LGALELG WA
Sbjct: 210 KDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWA 269
Query: 255 SSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYV 314
S+ M+RNEFL NPVLGT LIDMYAKCGRM A +VFR M+ KD VVWNA +SGL+M+G+V
Sbjct: 270 SNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHV 329
Query: 315 KVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGC 374
K AFG+FGQ+EK GI+P+GNTFVGLLC CTHAGLVDEGRQ+FNSM RVF+LTP IEHYGC
Sbjct: 330 KAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGC 389
Query: 375 MVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434
MVDLLGR+G LDEAH+L+KSMPME NAIVWGALL GCRLH+ T L E VL QLIALEP N
Sbjct: 390 MVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSN 449
Query: 435 SGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLS 494
SGNYVLLSNIYSASHKW DAAKIRS+M ++GI+K+ G SW+EVDGVVHEFLVGD SHPLS
Sbjct: 450 SGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLS 509
Query: 495 EKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDV 554
EKIY+KL EL LKA+G+VPTTD+VLFDIEEEEK++F+ CHSEKLA+AFGLI+TAP D
Sbjct: 510 EKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDK 569
Query: 555 IRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
IR+ KNLRVCGDCHEAIK IS+ TGREIIVRDNNRFHCF +GSCSCKD+W
Sbjct: 570 IRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/593 (54%), Positives = 435/593 (73%), Gaps = 5/593 (0%)
Query: 13 HAIEFYNSMRNEGFLPTNFTFPFVLKACAR-EHDFQLGVRSHSLIVKAGLDCDEFVKTSL 71
HA+ + + N P++ TFP LK+ +R H + G + H+ +K + V TSL
Sbjct: 104 HALRLHCLLPN----PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSL 159
Query: 72 LNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDS 131
L LY CG L A +VFD++P + VSWTA+I+ Y++ G+L EA+++ R G++PDS
Sbjct: 160 LTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS 219
Query: 132 FSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ 191
F+ VRVLTAC ++ DL+T + + + G ++VFVAT+ VDLY KCG M KAR VFD+
Sbjct: 220 FTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDK 279
Query: 192 MPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELG 251
M +KD V+W +M+ GYASNG P+EALD+F MQ E ++P+ Y + G LSAC LGAL+LG
Sbjct: 280 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 339
Query: 252 VWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMN 311
A ++ +EFL NPVLGT LIDMYAKCG A+A VF++M+ KD +VWNA++ GL M
Sbjct: 340 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 399
Query: 312 GYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEH 371
G+ K AF + GQ+EK G++ N NTF+GLLC CTH GL+ +GR++F++M++++ ++P IEH
Sbjct: 400 GHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEH 459
Query: 372 YGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALE 431
YGC+VDLL R+G L EAH+LI MPM NA++ GALL GC++H+ +LAEHVL QLI LE
Sbjct: 460 YGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLE 519
Query: 432 PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSH 491
PWNSGNYV+LSNIYS +W DAAK+R M +KG++K+ CSWVE +G VHEF VGD SH
Sbjct: 520 PWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSH 579
Query: 492 PLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAP 551
PLS++IY KLDEL ++K G+ PTT+ V+FD+E+EEK++ L HSEKLA+AF L+ T P
Sbjct: 580 PLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGP 639
Query: 552 KDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
+ IR+ KNLRVC DCH AIKLIS+IT REIIVRDNNRFHCF +GSCSC D+W
Sbjct: 640 GETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 604 | ||||||
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 1.0 | 0.881 | 0.591 | 3.9e-202 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.887 | 0.723 | 0.460 | 4.4e-139 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 1.0 | 0.693 | 0.404 | 5.6e-132 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.862 | 0.875 | 0.458 | 9.6e-128 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.978 | 0.896 | 0.421 | 2e-127 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.993 | 0.691 | 0.405 | 6.1e-126 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.998 | 0.745 | 0.392 | 7e-125 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.993 | 0.757 | 0.402 | 4.9e-124 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.991 | 0.727 | 0.401 | 4.4e-123 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.985 | 0.955 | 0.403 | 5.7e-123 |
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1956 (693.6 bits), Expect = 3.9e-202, P = 3.9e-202
Identities = 357/604 (59%), Positives = 462/604 (76%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+I GFV+N F ++ + S+R G FTFP VLKAC R +LG+ HSL+VK G
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
+ D TSLL++Y G L DA K+FD+IPD++VV+WTA+ SGY G EAI++F+
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+++ G+KPDS+ IV+VL+AC +GDL + +WI Y+ E +N FV T+LV+LYAKCG
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCG 261
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
MEKAR VFD M EKDIV+WS+MIQGYASN FPKE +++F M +ENLKP+ +++VG LS
Sbjct: 262 KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
+CASLGAL+LG W S ++R+EFL+N + LIDMYAKCG MA+ +VF+EMK+KD V+
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
NA +SGL+ NG+VK++F VFGQ EK GI P+G+TF+GLLCGC HAGL+ +G +FFN++S
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
V++L +EHYGCMVDL GR+G LD+A+ LI MPM PNAIVWGALL+GCRL K T LA
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E VL +LIALEPWN+GNYV LSNIYS +W++AA++R MM KG++KI G SW+E++G
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VHEFL D SHPLS+KIY+KL++L +++ GFVPTT+ V FD+EEEEK+ L HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKL 621
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+A GLI+T VIR+ KNLRVCGDCHE +KLISKIT REI+VRDNNRFHCF GSCSC
Sbjct: 622 AVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681
Query: 601 KDFW 604
D+W
Sbjct: 682 NDYW 685
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
Identities = 248/538 (46%), Positives = 366/538 (68%)
Query: 69 TSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLK 128
T+L+ Y GY+ +A K+FD+IP K+VVSW A+ISGY GN +EA+ +F+ ++ ++
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 129 PDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRV 188
PD ++V V++AC Q G + + +H ++++ G G N+ + +L+DLY+KCG +E A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 189 FDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGAL 248
F+++P KD++SW+++I GY KEAL +F M R P TM+ +L ACA LGA+
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 249 ELGVWASSFMERN-EFLSNPV-LGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVS 306
++G W ++++ + ++N L T+LIDMYAKCG + A +VF + K WNA++
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 307 GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT 366
G +M+G +F +F ++ K GIQP+ TFVGLL C+H+G++D GR F +M++ + +T
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQ 426
P +EHYGCM+DLLG SG EA E+I M MEP+ ++W +LL C++H +L E
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
Query: 427 LIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLV 486
LI +EP N G+YVLLSNIY+++ +WN+ AK R+++ DKG++K+ GCS +E+D VVHEF++
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623
Query: 487 GDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGL 546
GD HP + +IY L+E+ L+ AGFVP T VL ++EEE K+ L HSEKLA+AFGL
Sbjct: 624 GDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGL 683
Query: 547 ITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
I+T P + I KNLRVC +CHEA KLISKI REII RD RFH F +G CSC D+W
Sbjct: 684 ISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
Identities = 245/605 (40%), Positives = 377/605 (62%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+I G+VSN + + + M G T V CA LG HS+ VKA
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC 326
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
++ +LL++Y CG L A VF ++ D++VVS+T++I+GY EG EA+ +F
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+ G+ PD +++ VL C + L K +H ++ E G ++FV+ +L+D+YAKCG
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMF-YNMQRENLKPEYYTMVGVL 239
+M++A VF +M KDI+SW+++I GY+ N + EAL +F ++ + P+ T+ VL
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506
Query: 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299
ACASL A + G ++ RN + S+ + +L+DMYAKCG + A +F ++ KD V
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566
Query: 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359
W +++G M+G+ K A +F Q+ + GI+ + +FV LL C+H+GLVDEG +FFN M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626
Query: 360 SRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDL 419
+ P +EHY C+VD+L R+G L +A+ I++MP+ P+A +WGALL GCR+H L
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686
Query: 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479
AE V ++ LEP N+G YVL++NIY+ + KW ++R +G +G++K GCSW+E+ G
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746
Query: 480 VVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEK 539
V+ F+ GD+S+P +E I + L ++ ++ G+ P T + L D EE EK+ L HSEK
Sbjct: 747 RVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEK 806
Query: 540 LALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCS 599
LA+A G+I++ +IR+ KNLRVCGDCHE K +SK+T REI++RD+NRFH F +G CS
Sbjct: 807 LAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCS 866
Query: 600 CKDFW 604
C+ FW
Sbjct: 867 CRGFW 871
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
Identities = 240/524 (45%), Positives = 346/524 (66%)
Query: 84 ALKVFDDIPDK-NVVSWTAIISGYINEGNLEEAINMFRRLLHRGL-KPDSFSIVRVLTAC 141
A KVF I NV W +I GY GN A +++R + GL +PD+ + ++ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 142 TQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWS 201
T + D+ + IH V +G G ++V SL+ LYA CG++ A +VFD+MPEKD+V+W+
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 202 SMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERN 261
S+I G+A NG P+EAL ++ M + +KP+ +T+V +LSACA +GAL LG +M +
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Query: 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVF 321
N L+D+YA+CGR+ +A +F EM DK+ V W +++ GL++NG+ K A +F
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 311
Query: 322 GQLEKC-GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLG 380
+E G+ P TFVG+L C+H G+V EG ++F M + + P IEH+GCMVDLL
Sbjct: 312 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371
Query: 381 RSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440
R+GQ+ +A+E IKSMPM+PN ++W LL C +H +DLAE Q++ LEP +SG+YVL
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431
Query: 441 LSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSK 500
LSN+Y++ +W+D KIR M G++K+ G S VEV VHEFL+GD SHP S+ IY+K
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491
Query: 501 LDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKN 560
L E+ +L++ G+VP +V D+EEEEK+ + HSEK+A+AF LI+T + I + KN
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKN 551
Query: 561 LRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
LRVC DCH AIKL+SK+ REI+VRD +RFH F GSCSC+D+W
Sbjct: 552 LRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 253/600 (42%), Positives = 372/600 (62%)
Query: 14 AIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLN 73
A+ ++SMR PT +FP +KAC+ D G ++H G D FV ++L+
Sbjct: 60 ALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIV 119
Query: 74 LYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLL------HRGL 127
+Y CG L DA KVFD+IP +N+VSWT++I GY GN +A+++F+ LL +
Sbjct: 120 MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAM 179
Query: 128 KPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGN--MEKA 185
DS +V V++AC+++ + IH +V + G R V V +L+D YAK G + A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239
Query: 186 RRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKP-EYYTMVGVLSACAS 244
R++FDQ+ +KD VS++S++ YA +G EA ++F + + + T+ VL A +
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 245 LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAV 304
GAL +G + R + ++GT++IDMY KCGR+ A K F MK+K+ W A+
Sbjct: 300 SGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAM 359
Query: 305 VSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS 364
++G M+G+ A +F + G++PN TFV +L C+HAGL EG ++FN+M F
Sbjct: 360 IAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFG 419
Query: 365 LTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVL 424
+ P +EHYGCMVDLLGR+G L +A++LI+ M M+P++I+W +LLA CR+HK +LAE +
Sbjct: 420 VEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISV 479
Query: 425 NQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEF 484
+L L+ N G Y+LLS+IY+ + +W D ++R +M ++G+ K G S +E++G VH F
Sbjct: 480 ARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVF 539
Query: 485 LVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAF 544
L+GD HP EKIY L EL KL AG+V T V D++EEEK+ L HSEKLA+AF
Sbjct: 540 LIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAF 599
Query: 545 GLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
G++ T P + + KNLRVC DCH IKLISKI RE +VRD RFH F +G CSC D+W
Sbjct: 600 GIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
Identities = 246/607 (40%), Positives = 380/607 (62%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MI G+ +N A+ + SMR + +F V+K CA + + + H +VK G
Sbjct: 266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDK-NVVSWTAIISGYINEGNLEEAINMF 119
D+ ++T+L+ Y C + DAL++F +I NVVSWTA+ISG++ EEA+++F
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLF 385
Query: 120 RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179
+ +G++P+ F+ +LTA L +S ++ +H V + R+ V T+L+D Y K
Sbjct: 386 SEMKRKGVRPNEFTYSVILTA---LPVISPSE-VHAQVVKTNYERSSTVGTALLDAYVKL 441
Query: 180 GNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVL 239
G +E+A +VF + +KDIV+WS+M+ GYA G + A+ MF + + +KP +T +L
Sbjct: 442 GKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSIL 501
Query: 240 SACASLGA-LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ 298
+ CA+ A + G F ++ S+ + + L+ MYAK G + A +VF+ ++KD
Sbjct: 502 NVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDL 561
Query: 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNS 358
V WN+++SG + +G A VF +++K ++ +G TF+G+ CTHAGLV+EG ++F+
Sbjct: 562 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDI 621
Query: 359 MSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTD 418
M R + P EH CMVDL R+GQL++A ++I++MP + +W +LA CR+HKKT+
Sbjct: 622 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTE 681
Query: 419 LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVD 478
L ++IA++P +S YVLLSN+Y+ S W + AK+R +M ++ ++K G SW+EV
Sbjct: 682 LGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVK 741
Query: 479 GVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSE 538
+ FL GD SHPL ++IY KL++L+T+LK G+ P T +VL DI++E K+ LA HSE
Sbjct: 742 NKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSE 801
Query: 539 KLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFI-EGS 597
+LA+AFGLI T + I KNLRVCGDCH IKLI+KI REI+VRD+NRFH F +G
Sbjct: 802 RLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGV 861
Query: 598 CSCKDFW 604
CSC DFW
Sbjct: 862 CSCGDFW 868
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
Identities = 237/604 (39%), Positives = 362/604 (59%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
++ G+ N + A+E SM E P+ T VL A + +G H +++G
Sbjct: 207 IVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
D + T+L+++Y CG L A ++FD + ++NVVSW ++I Y+ N +EA+ +F+
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
++L G+KP S++ L AC LGDL ++IH E G RNV V SL+ +Y KC
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK 386
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
++ A +F ++ + +VSW++MI G+A NG P +AL+ F M+ +KP+ +T V V++
Sbjct: 387 EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
A A L W + R+ N + T L+DMYAKCG + A +F M ++
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
WNA++ G +G+ K A +F +++K I+PNG TF+ ++ C+H+GLV+ G + F M
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
+S+ ++HYG MVDLLGR+G+L+EA + I MP++P V+GA+L C++HK + A
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E +L L P + G +VLL+NIY A+ W ++R M +G++K GCS VE+
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNE 686
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VH F G +HP S+KIY+ L++L +K AG+VP T+ VL +E + K+ L+ HSEKL
Sbjct: 687 VHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKL 745
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A++FGL+ T I + KNLRVC DCH A K IS +TGREI+VRD RFH F G+CSC
Sbjct: 746 AISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSC 805
Query: 601 KDFW 604
D+W
Sbjct: 806 GDYW 809
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 244/606 (40%), Positives = 363/606 (59%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGF--LPTNFTFPFVLKACAREHDFQLGVRSHSLIVK 58
MI G+ N+ + +I+ + + NE L T T +L A A + +LG++ HSL K
Sbjct: 191 MISGYRKNEMYVESIQVFRDLINESCTRLDTT-TLLDILPAVAELQELRLGMQIHSLATK 249
Query: 59 AGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINM 118
G ++V T ++LY CG + +F + ++V++ A+I GY + G E ++++
Sbjct: 250 TGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSL 309
Query: 119 FRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK 178
F+ L+ G + S ++V ++ G L IHGY ++ + V+T+L +Y+K
Sbjct: 310 FKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSK 366
Query: 179 CGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGV 238
+E AR++FD+ PEK + SW++MI GY NG ++A+ +F MQ+ P T+ +
Sbjct: 367 LNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426
Query: 239 LSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ 298
LSACA LGAL LG W + +F S+ + T LI MYAKCG +A+A ++F M K++
Sbjct: 427 LSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE 486
Query: 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNS 358
V WN ++SG ++G + A +F ++ GI P TF+ +L C+HAGLV EG + FNS
Sbjct: 487 VTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNS 546
Query: 359 MSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTD 418
M + P ++HY CMVD+LGR+G L A + I++M +EP + VW LL CR+HK T+
Sbjct: 547 MIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTN 606
Query: 419 LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVD 478
LA V +L L+P N G +VLLSNI+SA + AA +R + + K G + +E+
Sbjct: 607 LARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIG 666
Query: 479 GVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSE 538
H F GD SHP ++IY KL++L K++ AG+ P T+ L D+EEEE++ + HSE
Sbjct: 667 ETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSE 726
Query: 539 KLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSC 598
+LA+AFGLI T P IRI KNLRVC DCH KLISKIT R I+VRD NRFH F +G C
Sbjct: 727 RLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVC 786
Query: 599 SCKDFW 604
SC D+W
Sbjct: 787 SCGDYW 792
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 244/607 (40%), Positives = 369/607 (60%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MI G+ + + A+ N +R + T +L AC DF GV HS +K G
Sbjct: 222 MISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG 277
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGY-INEGNLEEAINMF 119
L+ + FV L++LY G L D KVFD + ++++SW +II Y +NE L AI++F
Sbjct: 278 LESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLR-AISLF 336
Query: 120 RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKG-RNVFVATSLVDLYAK 178
+ + ++PD +++ + + +QLGD+ + + G+ G ++ + ++V +YAK
Sbjct: 337 QEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK 396
Query: 179 CGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQREN-LKPEYYTMVG 237
G ++ AR VF+ +P D++SW+++I GYA NGF EA++M+ M+ E + T V
Sbjct: 397 LGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVS 456
Query: 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD 297
VL AC+ GAL G+ + +N + + T+L DMY KCGR+ A +F ++ +
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVN 516
Query: 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFN 357
V WN +++ +G+ + A +F ++ G++P+ TFV LL C+H+GLVDEG+ F
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE 576
Query: 358 SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKT 417
M + +TP ++HYGCMVD+ GR+GQL+ A + IKSM ++P+A +WGALL+ CR+H
Sbjct: 577 MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNV 636
Query: 418 DLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEV 477
DL + L +EP + G +VLLSN+Y+++ KW +IRS+ KG++K G S +EV
Sbjct: 637 DLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEV 696
Query: 478 DGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHS 537
D V F G+ +HP+ E++Y +L L KLK G+VP VL D+E++EK++ L HS
Sbjct: 697 DNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHS 756
Query: 538 EKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGS 597
E+LA+AF LI T K IRI KNLRVCGDCH K ISKIT REIIVRD+NRFH F G
Sbjct: 757 ERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGV 816
Query: 598 CSCKDFW 604
CSC D+W
Sbjct: 817 CSCGDYW 823
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
Identities = 245/607 (40%), Positives = 362/607 (59%)
Query: 2 IRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGL 61
+R F +I Y SM G P F+FPF+LK+CA G + H + K G
Sbjct: 25 LRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGC 84
Query: 62 DCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVS--WTAIISGYINEGNLEEAINMF 119
+ + FV T+L+++Y CG +ADA KVF++ P + +S + A+ISGY + +A MF
Sbjct: 85 ETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMF 144
Query: 120 RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179
RR+ G+ DS +++ ++ CT L + +HG + G V V S + +Y KC
Sbjct: 145 RRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKC 204
Query: 180 GNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVL 239
G++E RR+FD+MP K +++W+++I GY+ NG + L+++ M+ + P+ +T+V VL
Sbjct: 205 GSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVL 264
Query: 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299
S+CA LGA ++G +E N F+ N + I MYA+CG +A+A VF M K V
Sbjct: 265 SSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLV 324
Query: 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359
W A++ M+G ++ +F + K GI+P+G FV +L C+H+GL D+G + F +M
Sbjct: 325 SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 384
Query: 360 SRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDL 419
R + L P EHY C+VDLLGR+G+LDEA E I+SMP+EP+ VWGALL C++HK D+
Sbjct: 385 KREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDM 444
Query: 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479
AE ++I EP N G YVL+SNIYS S +IR MM ++ +K G S+VE G
Sbjct: 445 AELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG 504
Query: 480 VVHEFLVGDNSHPLSEKIYSKLDELATK-LKAAGFVPTTDHVLFDIEE-EEKQYFLACHS 537
VH FL GD SH +E+++ LDEL T ++ AG + D + EE HS
Sbjct: 505 RVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM--------DCDRGEEVSSTTREHS 556
Query: 538 EKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGS 597
E+LA+AFG++ + P I + KNLRVC DCH +K +SKI R+ +VRD +RFH F +G
Sbjct: 557 ERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGV 616
Query: 598 CSCKDFW 604
CSCKD+W
Sbjct: 617 CSCKDYW 623
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SR82 | PP219_ARATH | No assigned EC number | 0.5910 | 0.9900 | 0.8729 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 604 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-173 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-169 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-76 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-63 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-48 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 7e-29 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 508 bits (1309), Expect = e-173
Identities = 211/573 (36%), Positives = 336/573 (58%)
Query: 32 TFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDI 91
T+ +++AC + + + +G + D+++ +L ++V CG L DA ++FD++
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 92 PDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAK 151
P++N+ SW II G ++ GN EA +FR + G + + V +L A LG +
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 152 WIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNG 211
+H V + G + FV+ +L+D+Y+KCG++E AR VFD MPEK V+W+SM+ GYA +G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 212 FPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGT 271
+ +EAL ++Y M+ + + +T ++ + L LE A + + R F + V T
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 272 TLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP 331
L+D+Y+K GRM A VF M K+ + WNA+++G +G A +F ++ G+ P
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 332 NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL 391
N TF+ +L C ++GL ++G + F SMS + P HY CM++LLGR G LDEA+ +
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
Query: 392 IKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451
I+ P +P +W ALL CR+HK +L +L + P NYV+L N+Y++S +
Sbjct: 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544
Query: 452 NDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAA 511
+AAK+ + KG+ C+W+EV H F GD HP S +IY KLDEL ++
Sbjct: 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604
Query: 512 GFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAI 571
G+V + +L D++E+E++ HSEKLA+AFGLI T+ ++I ++ R+C DCH+ I
Sbjct: 605 GYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVI 664
Query: 572 KLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604
K I+ +T REI+VRD +RFH F G CSC D+W
Sbjct: 665 KFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 503 bits (1296), Expect = e-169
Identities = 235/602 (39%), Positives = 343/602 (56%), Gaps = 3/602 (0%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
MI G+ N +E + +MR P T V+ AC D +LG H +VK G
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
D V SL+ +Y+ G +A KVF + K+ VSWTA+ISGY G ++A+ +
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+ + PD +I VL+AC LGDL +H G V VA +L+++Y+KC
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
++KA VF +PEKD++SW+S+I G N EAL F M LKP T++ LS
Sbjct: 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALS 497
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
ACA +GAL G + + R + L L+D+Y +CGRM A F + KD V
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVS 556
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
WN +++G +G +A +F ++ + G+ P+ TF+ LLC C+ +G+V +G ++F+SM
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLA 420
+S+TP ++HY C+VDLLGR+G+L EA+ I MP+ P+ VWGALL CR+H+ +L
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676
Query: 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480
E + L+P + G Y+LL N+Y+ + KW++ A++R M + G+ GCSWVEV G
Sbjct: 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736
Query: 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKL 540
VH FL D SHP ++I + L+ K+KA+G + + +IE + F HSE+L
Sbjct: 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG-HSERL 795
Query: 541 ALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSC 600
A+AFGLI T P I + KNL +C +CH +K ISKI REI VRD +FH F +G CSC
Sbjct: 796 AIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSC 855
Query: 601 KD 602
D
Sbjct: 856 GD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 5e-76
Identities = 138/430 (32%), Positives = 225/430 (52%), Gaps = 8/430 (1%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
++ G+ F A+ Y+ M G P +TFP VL+ C D G H+ +V+ G
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
+ D V +L+ +YV CG + A VFD +P ++ +SW A+ISGY G E + +F
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF 277
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+ + PD +I V++AC LGD + +HGYV + G +V V SL+ +Y G
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
+ +A +VF +M KD VSW++MI GY NG P +AL+ + M+++N+ P+ T+ VLS
Sbjct: 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300
ACA LG L++GV ER +S V+ LI+MY+KC + +A +VF + +KD +
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457
Query: 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360
W ++++GL +N A F Q+ ++PN T + L C G + G++ +
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIH---A 513
Query: 361 RVFSLTPMIEHY--GCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTD 418
V + + ++DL R G+++ A S E + + W LL G H K
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGS 571
Query: 419 LAEHVLNQLI 428
+A + N+++
Sbjct: 572 MAVELFNRMV 581
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 4e-63
Identities = 130/466 (27%), Positives = 231/466 (49%), Gaps = 13/466 (2%)
Query: 2 IRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGL 61
+R S+ + A++ SM+ + + + C + + G R S + +
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117
Query: 62 DCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRR 121
+ ++L+++V G L A VF +P++++ SW ++ GY G +EA+ ++ R
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 122 LLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGN 181
+L G++PD ++ VL C + DL+ + +H +V G +V V +L+ +Y KCG+
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 182 MEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSA 241
+ AR VFD+MP +D +SW++MI GY NG E L++F+ M+ ++ P+ T+ V+SA
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 242 CASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVW 301
C LG LG ++ + F + + +LI MY G +A KVF M+ KD V W
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357
Query: 302 NAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361
A++SG NG A + +E+ + P+ T +L C G +D G + R
Sbjct: 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417
Query: 362 VFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAE 421
L + ++++ + +D+A E+ ++P E + I W +++AG RL+ + A
Sbjct: 418 K-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEAL 475
Query: 422 HVLNQLIA-LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466
Q++ L+P N V L SA A+I ++M K I
Sbjct: 476 IFFRQMLLTLKP----NSVTLIAALSA------CARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 3e-48
Identities = 104/363 (28%), Positives = 183/363 (50%), Gaps = 3/363 (0%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG 60
+I G V ++ A + M +G TF +L+A A + G + H ++K G
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 61 LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFR 120
+ D FV +L+++Y CG + DA VFD +P+K V+W ++++GY G EEA+ ++
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180
+ G+ D F+ ++ ++L L AK H + G ++ T+LVDLY+K G
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
Query: 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
ME AR VFD+MP K+++SW+++I GY ++G +A++MF M E + P + T + VLS
Sbjct: 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
Query: 241 ACASLGALELGVWASSFMERNEFLSNPVLG-TTLIDMYAKCGRMAQACKVFREMKDKDQV 299
AC G E G M N + + +I++ + G + +A + R K V
Sbjct: 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494
Query: 300 -VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNS 358
+W A+++ ++ +++ +L G + N +V LL +G E + +
Sbjct: 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN-YVVLLNLYNSSGRQAEAAKVVET 553
Query: 359 MSR 361
+ R
Sbjct: 554 LKR 556
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-29
Identities = 60/131 (45%), Positives = 74/131 (56%), Gaps = 23/131 (17%)
Query: 470 RGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEE- 528
GC W E + L GD SHP S +EL ++K G VP T + D++ EE
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 529 -----KQYFLACHSEKLALAFGLITTAPKDVIRIAKNL-RVCGDCHEAIKLISKITGREI 582
K LA H+EK ALA+GL+TT RI K L R+CGDCHE + I+K TGREI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 583 IVRDNNRFHCF 593
IVRD +RFH F
Sbjct: 105 IVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 74/351 (21%), Positives = 154/351 (43%), Gaps = 16/351 (4%)
Query: 91 IPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTA 150
I + + ++ ++S + +++ A+ + R + GLK D +++ C + G +
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 151 KWI-HGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDI----VSWSSMIQ 205
+ H VN AG NV +L+D A+ G + KA + M K++ V ++++I
Sbjct: 492 FEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 206 GYASNGFPKEALDMFYNMQREN--LKPEYYTMVGVLSACASLGALELGVWASSFMERNEF 263
+G A D+ M+ E + P++ T+ ++ ACA+ G ++ +
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 264 LSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK----DQVVWNAVVSGLSMNGYVKVAFG 319
P + T ++ ++ G A ++ +MK K D+V ++A+V G + AF
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 320 VFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLL 379
+ K GI+ ++ L+ C++A + + + + + L P + ++ L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITAL 729
Query: 380 GRSGQLDEAHEL---IKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQL 427
QL +A E+ +K + + PN I + LL D+ +L+Q
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 10/214 (4%)
Query: 201 SSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELG--VWASSFM 258
+S ++ S+G ++AL + +MQ + + V + C A+E G V + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 259 ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAF 318
LG ++ M+ + G + A VF +M ++D WN +V G + GY A
Sbjct: 115 SHPSL--GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 319 GVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD--EGRQFFNSMSRVFSLTPMIEHYGCMV 376
++ ++ G++P+ TF +L C G+ D GR+ + R F ++ ++
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVR-FGFELDVDVVNALI 229
Query: 377 DLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAG 410
+ + G + A + MP + I W A+++G
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRR-DCISWNAMISG 262
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-09
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFS 133
+VV++ +I GY +G +EEA+ +F + RG+KP+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACA 243
D+V+++++I GY G +EAL +F M++ +KP YT ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 13/180 (7%)
Query: 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFF 356
D ++ ++S + +G V F VF ++ G++ N +TF L+ GC AG V + +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 357 NSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-----PMEPNAIVWGALLAGC 411
M R ++ P + ++ G+SG +D A +++ M P++P+ I GAL+ C
Sbjct: 531 GIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 412 RLHKKTDLAEHVLNQL----IALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467
+ D A+ V + I P Y + N S W+ A I M KG++
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTP---EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 165 NVFVATSLVDLYAKCGNMEKARRVFDQMPEK----DIVSWSSMIQGYA 208
+V +L+D Y K G +E+A ++F++M ++ ++ ++S +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 296 KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGC 343
D V +N ++ G G V+ A +F +++K GI+PN T+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENL 228
V+++S+I GY G +EAL++F M+ + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDS 131
V++ +I G G +EEA+ +F+ + RG++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 271 TTLIDMYAKCGRMAQACKVFREMKDK----DQVVWNAVVSGL 308
TLID Y K G++ +A K+F EMK + + ++ ++ GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAR 42
+I G+ + A++ +N M+ G P +T+ ++ +
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGL 127
V++ ++ISGY G LEEA+ +F+ + +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230
V+++++I G G +EAL++F M+ ++P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 170 TSLVDLYAKCGNMEKARRVFDQMPEKDI 197
SL+ Y K G +E+A +F +M EK +
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 271 TTLIDMYAKCGRMAQACKVFREMK 294
TLID + GR+ +A ++ EM+
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (91), Expect = 0.002
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 13/174 (7%)
Query: 71 LLNLYVHCGYLADALKVFDDIPDK-----NVVSWTAIISGYINEGNLEEAINMFRRLLHR 125
L + G L +AL++ + + + + G EEA+ + + L
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124
Query: 126 GLKPDSFSIVRVLTACTQLGDLSTAK--WIHGYVNEAGKGRNVFVATSLVDLYAKCGNME 183
PD + L A +LGD A + + +L L G E
Sbjct: 125 DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 184 KARRVFDQM----PEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYY 233
+A + ++ P+ D + ++ Y G +EAL+ + + L P+
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY--EKALELDPDNA 236
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 170 TSLVDLYAKCGNMEKARRVFDQMPEKDIV 198
+L+D K G +E+A +F +M E+ I
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 271 TTLIDMYAKCGRMAQACKVFREMKDKD 297
+LI Y K G++ +A ++F+EMK+K
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 95 NVVSWTAIISGYINEGNLEEAINMFRR 121
+VV++ +I G G ++EA+ +
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 604 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.12 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.12 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.11 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.97 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.73 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.55 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.42 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.14 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.98 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.9 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.88 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.67 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.66 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.5 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.45 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.41 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.39 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.35 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.18 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.18 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.16 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.11 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.03 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.02 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.98 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.94 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.92 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.87 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.82 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.75 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.74 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.72 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.7 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.6 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.56 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.56 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.53 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.51 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.42 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.28 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.13 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.84 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.82 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.66 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.6 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.5 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.48 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.23 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.16 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.03 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.99 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.86 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.68 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.53 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.4 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.37 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.15 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.14 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.03 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.98 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.94 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.9 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.79 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.66 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.45 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.21 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.98 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.77 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.45 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.86 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.63 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.39 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.19 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.18 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.92 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.5 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.23 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.98 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.68 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.38 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.28 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.04 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.02 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.95 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.93 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.85 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.69 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.36 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.87 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.75 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.12 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.86 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.74 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.27 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.62 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.09 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.93 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.7 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.18 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.28 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.16 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.81 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.21 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.72 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.53 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.47 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.41 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.13 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.78 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.57 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.4 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.39 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-124 Score=1019.89 Aligned_cols=604 Identities=36% Similarity=0.672 Sum_probs=596.4
Q ss_pred CccchhhcCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 1 MIRGFVSNDCFQHAIEFYNSMRNEG-FLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCG 79 (604)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 79 (604)
+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.++|..|.+.|+.||..++|.|+.+|+++|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3678999999999999999998864 789999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 80 YLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044872 160 AGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVL 239 (604)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 239 (604)
.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHH
Q 044872 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
.+|++.|.++.|.++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|++
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044872 320 VFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEP 399 (604)
Q Consensus 320 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 399 (604)
+|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++++++|+++|++++|.+++++|+..|
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p 492 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~ 479 (604)
+..+|++|+.+|+.+|+++.|..+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+|||++++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHHHHhhhHHHHHHHHccccCCCCCeEEEEe
Q 044872 480 VVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAK 559 (604)
Q Consensus 480 ~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 559 (604)
++|.|++|+..||+.++|+..+.++..+|++.||.||+..+++++++++|+..+..||||||+|||||+++||.||||+|
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~k 652 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQ 652 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHhhhcCceEEEecCCccceeccccccCCCCC
Q 044872 560 NLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604 (604)
Q Consensus 560 ~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~~~ 604 (604)
|||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 653 nlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 653 SHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-121 Score=1015.45 Aligned_cols=599 Identities=39% Similarity=0.724 Sum_probs=590.7
Q ss_pred CccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY 80 (604)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 80 (604)
||++|+++|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 81 LADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
+++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||++++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 59999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHH
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGV 320 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 320 (604)
+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 044872 321 FGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN 400 (604)
Q Consensus 321 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 400 (604)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|+++|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999997789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCE
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~ 480 (604)
..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|+||+|||+++++
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHHHHhhhHHHHHHHHccccCCCCCeEEEEec
Q 044872 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKN 560 (604)
Q Consensus 481 ~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 560 (604)
+|.|++|+.+||+.++||..|+++..+|++.||.||+..++ ++++++|+..++.||||||+|||||+++||.||||+||
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~kn 815 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKN 815 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCC
Confidence 99999999999999999999999999999999999999888 55788899999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHhhhcCceEEEecCCccceeccccccCCC
Q 044872 561 LRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKD 602 (604)
Q Consensus 561 l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~ 602 (604)
||+|+|||+++|+||++++|+|||||.+|||||++|+|||+|
T Consensus 816 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 816 LYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-76 Score=655.74 Aligned_cols=584 Identities=24% Similarity=0.418 Sum_probs=519.4
Q ss_pred CccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY 80 (604)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 80 (604)
+|++|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.+..|.++|..+.+.+..++..++|+|+.+|+++|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 81 LADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+.+.
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
|+.||+.++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHH
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGV 320 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 320 (604)
+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 044872 321 FGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN 400 (604)
Q Consensus 321 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 400 (604)
|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|+ +||
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d 454 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD 454 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999976 999999999999999999999999999999997 579
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCC----------
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIR---------- 470 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~---------- 470 (604)
..+|++++.+|.+.|+.++|..+|++|.+.-+.|..+|..++.+|++.|..+.+.+++..|.+.|+.++.
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999998543335556655554444444444444444444443333221
Q ss_pred -------------------ceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHH
Q 044872 471 -------------------GCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQY 531 (604)
Q Consensus 471 -------------------~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~ 531 (604)
..+| +.++.|+..|++.+++. +++++|++.|+.||..++..-+..+.+.+
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~-------n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSW-------NILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhH-------HHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 2356 67788888999888874 78889999999999999987776666544
Q ss_pred HH---hhhHHHHHHHHccccCCCCCeEEEEecccccCChhHHHHHHhhhcCc------eEEEecCCccceeccccc
Q 044872 532 FL---ACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGR------EIIVRDNNRFHCFIEGSC 598 (604)
Q Consensus 532 ~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~------~~~~~~~~~~h~~~~g~~ 598 (604)
.+ ....+.+...+|+.++..++. ++++-+.++|+..+|.++|.+++.+ ..++..|+.+.+.+.|+-
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 33 223344444577766665555 5788999999999999999998644 234455655555555543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-65 Score=554.73 Aligned_cols=441 Identities=18% Similarity=0.279 Sum_probs=413.1
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHHHHH
Q 044872 28 PTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIP----DKNVVSWTAII 103 (604)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 103 (604)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999997 48999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCC
Q 044872 104 SGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE--AGKGRNVFVATSLVDLYAKCGN 181 (604)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~ 181 (604)
.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred HHHHHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 044872 182 MEKARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSF 257 (604)
Q Consensus 182 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 257 (604)
+++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999976 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 044872 258 MERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK----DKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 258 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|+.++|+++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999995 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHh----hcC-------------------CHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLG----RSG-------------------QLDEAHE 390 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~ 390 (604)
.||+.++.+|++.|++++|.++|+.|.+. |+.||..+|+++++++. +++ ..++|..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 99999999999999999999999999976 99999999999997643 222 2467999
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 391 LIKSM---PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA-LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 391 ~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
+|++| ++.||..||+.++.++...+..+.+..+++.+.. -.+.+..+|..|++.+.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 99999 8899999999999888888889998888887653 2355678999999987332 3689999999999999
Q ss_pred ccCCc
Q 044872 467 QKIRG 471 (604)
Q Consensus 467 ~~~~~ 471 (604)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 87753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=531.02 Aligned_cols=528 Identities=17% Similarity=0.249 Sum_probs=457.4
Q ss_pred CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHH
Q 044872 26 FLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGL-DCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIIS 104 (604)
Q Consensus 26 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 104 (604)
..++...|..++..+.+.|+++.|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778899999999999999999999999999985 5777888899999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 044872 105 GYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEK 184 (604)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (604)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 044872 185 ARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQR--ENLKPEYYTMVGVLSACASLGALELGVWASSFM 258 (604)
Q Consensus 185 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 258 (604)
|.++|++|.+ ||..+||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999964 8999999999999999999999999999986 689999999999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 259 ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 259 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999974 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM---PMEPNAIVWGALLAGC 411 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~ 411 (604)
+|++++.+|++.|++++|.++|+.|.+. |+.||..+|++||.+|++.|++++|.++|++| ++.||..+|++++.+|
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999875 99999999999999999999999999999998 7889999999999999
Q ss_pred HhcCChHHHHHHHHHHHccC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC-ccCCceeEEEECCEEEEEEecCC
Q 044872 412 RLHKKTDLAEHVLNQLIALE-PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI-QKIRGCSWVEVDGVVHEFLVGDN 489 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~s~~~~~~~~~~f~~~~~ 489 (604)
.+.|+++.|.+++++|.+.+ ..|..+|..|+.+|. +++++|.++.+.+..-+. .+....+|
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w--------------- 827 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIENKW--------------- 827 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccccch---------------
Confidence 99999999999999998754 225678888887754 246666665444432110 00011122
Q ss_pred CCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhh-hHHHHhhhHHHHHHHHccccCCCCCeEE--EEecccccCC
Q 044872 490 SHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEE-KQYFLACHSEKLALAFGLITTAPKDVIR--IAKNLRVCGD 566 (604)
Q Consensus 490 ~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~l~~c~~ 566 (604)
. .....++++|++.|+.||..++...+ .|. +... ......+-..++..+.+|+.... +++.+ |..
T Consensus 828 ----~----~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~ 895 (1060)
T PLN03218 828 ----T----SWALMVYRETISAGTLPTMEVLSQVL-GCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF--GEY 895 (1060)
T ss_pred ----H----HHHHHHHHHHHHCCCCCCHHHHHHHH-HHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccC
Confidence 1 22357889999999999998886544 222 1111 12233344446666666664421 33332 112
Q ss_pred hhHHHHHHhhhcCceEE
Q 044872 567 CHEAIKLISKITGREII 583 (604)
Q Consensus 567 ~~~~~~~~s~~~~~~~~ 583 (604)
-..|..++..+..+.|+
T Consensus 896 ~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 25799999998888664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=507.99 Aligned_cols=487 Identities=23% Similarity=0.362 Sum_probs=429.2
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRG-LKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSL 172 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (604)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 044872 173 VDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV 252 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (604)
+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 253 WASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCR 412 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 412 (604)
..||++++.+|++.|.+++|.++++.|.+. |+.||..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999976 999999999999999999999999999999996 589999999999999
Q ss_pred hcCChHHHHHHHHHHHccC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHhh-CCCccCCceeEEEECCEEEEEEecCC
Q 044872 413 LHKKTDLAEHVLNQLIALE--PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD-KGIQKIRGCSWVEVDGVVHEFLVGDN 489 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~f~~~~~ 489 (604)
++|+.++|.++|++|.+.+ | |..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+... | +.++.+..
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-y-------~~li~~l~ 473 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH-Y-------ACMIELLG 473 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc-h-------HhHHHHHH
Confidence 9999999999999998644 5 678999999999999999999999999986 577765432 2 34555666
Q ss_pred CCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHHHHhhhHHH-HHHHHccccCCCCCeEEEEecccccCChh
Q 044872 490 SHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEK-LALAFGLITTAPKDVIRIAKNLRVCGDCH 568 (604)
Q Consensus 490 ~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~c~~~~ 568 (604)
..++.+++++ .+++.++.||..+|..-+..+.+++.+- -.+. ....+++-+...+..+.+.+-+..+|+..
T Consensus 474 r~G~~~eA~~-------~~~~~~~~p~~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 474 REGLLDEAYA-------MIRRAPFKPTVNMWAALLTACRIHKNLE-LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred hcCCHHHHHH-------HHHHCCCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 6676666643 3456789999887755454443332210 0011 11224554444444455666788999999
Q ss_pred HHHHHHhhhcCceEE-------EecCCccceecccccc
Q 044872 569 EAIKLISKITGREII-------VRDNNRFHCFIEGSCS 599 (604)
Q Consensus 569 ~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~~s 599 (604)
+|.+++.++..+.+- +.-.+..|.|..|-.+
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 999999999988652 3345567888766443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-28 Score=277.73 Aligned_cols=451 Identities=14% Similarity=0.083 Sum_probs=261.9
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.+...|++++|++.|+.+.+..+. +......++..+.+.|+++.|..+++.+.+. .+.+..++..+...|...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH
Confidence 345566667777777666654432 2233444555566666666666666666553 23445566666666666666666
Q ss_pred HHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|..++..+.+.
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666665432 234455556666666666666666666666543 224455556666666666666666666666554
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVG 237 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 237 (604)
+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 4 33445555666666666666666666666543 234556666666666666666666666665532 223444555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCH
Q 044872 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 314 (604)
+..++...|+++.|..++..+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...|..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 5566666666666666666665543 22345555666666666666666666666543 2334455555566666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044872 315 KVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 315 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (604)
++|.+.|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|++
T Consensus 720 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6666666666553 344455555556666666666666666665542 233455555566666666666666666665
Q ss_pred C-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 395 M-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 395 ~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+ ... ++..+++.+...+...|+ ++|+..++++++..|+++..+..++.++...|++++|.++++++.+.+
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5 222 244455556666666666 556666666666666666566666666666666666666666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=272.08 Aligned_cols=451 Identities=15% Similarity=0.065 Sum_probs=376.4
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
..|.+.|++++|.+.|+++.+..+. +...+..+...+...|+++.|...+..+.+.... .......++..|.+.|+++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 3577889999999999999876432 5566777778888899999999999998876532 3455667788899999999
Q ss_pred HHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 83 DALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 83 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
+|..+++.+.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++.+.+
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988754 466789999999999999999999999998753 23455677788888899999999999999988
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 160 AGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++++.... +.+..++.
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 75 45778888999999999999999999988754 345678888999999999999999999988753 45677888
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCC
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGY 313 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 313 (604)
.+..++...|+++.|...+..+.+.. +.+...+..+..+|.+.|++++|...|+++.+ .+..+|..++..+...|+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999988765 33567788899999999999999999998764 356788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 044872 314 VKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIK 393 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (604)
+++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..+...+.+.|++++|.+.++
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998864 445677778888899999999999999988843 5666777888899999999999999998
Q ss_pred hC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 394 SM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 394 ~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++ ... .+..++..+...|...|+.++|...|+++++..|+++..+..++.++...|+ ++|..+++++.+.
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 87 333 4566888888889999999999999999999999999999999999999999 8899999988774
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-32 Score=216.00 Aligned_cols=106 Identities=68% Similarity=1.118 Sum_probs=96.5
Q ss_pred ceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhh--------HHHHhhhHHHHHH
Q 044872 471 GCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEK--------QYFLACHSEKLAL 542 (604)
Q Consensus 471 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~l~~ 542 (604)
|+||+++ |.|++|+.+||+. ++..+|...||.|+...+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899776 9999999999987 455677888999999999998888766 4578999999999
Q ss_pred HHccccCCCCCeEEEEecc-cccCChhHHHHHHhhhcCceEEEecCCccceec
Q 044872 543 AFGLITTAPKDVIRIAKNL-RVCGDCHEAIKLISKITGREIIVRDNNRFHCFI 594 (604)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 594 (604)
||||+++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-20 Score=215.34 Aligned_cols=450 Identities=13% Similarity=0.035 Sum_probs=289.6
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNF-TFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
.+.+.|++++|+..|+++.+.++. +.. ............|+.++|...++.+++.. +.+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 467889999999999999876432 322 11111222234588999999999998874 445677888889999999999
Q ss_pred HHHHHhccCCCCCc------cc-----------------HH----------------------------------HHHHH
Q 044872 83 DALKVFDDIPDKNV------VS-----------------WT----------------------------------AIISG 105 (604)
Q Consensus 83 ~A~~~f~~~~~~~~------~~-----------------~~----------------------------------~li~~ 105 (604)
+|...|+++...+. .. +. .....
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999887632110 00 00 11234
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHH------------HHH
Q 044872 106 YINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRN-VFVA------------TSL 172 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~------------~~l 172 (604)
+...|++++|+..|++.++... .+...+..+..++...|++++|...++.+++...... ...+ ..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 5667889999999998887532 2667788888888889999999999998887653321 1111 223
Q ss_pred HHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHH------
Q 044872 173 VDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSAC------ 242 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~------ 242 (604)
...+.+.|++++|...|++..+ .+...+..+...|...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHH
Confidence 4567788999999999988765 34556777888899999999999999888764 333 33333333332
Q ss_pred ------------------------------------HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044872 243 ------------------------------------ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQA 286 (604)
Q Consensus 243 ------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (604)
...|++++|...++.+++.... ++.++..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 2334444444444444443321 233344444445555555555
Q ss_pred HHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCcHHHHHH
Q 044872 287 CKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN---------TFVGLLCGCTHAGLVDEGRQ 354 (604)
Q Consensus 287 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~ 354 (604)
...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+......+...|+.++|..
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 555444422 1 22222223333334444444444444432211111110 11223344555666666666
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
+++. .+++...+..+...|.+.|++++|.+.|++. ...| +...+..+...+...|+.++|++.++++.+..|
T Consensus 595 ~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 6551 1234555667788888899999999988887 4455 456888888888889999999999998888888
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 433 WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 433 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+++..+..++.++...|++++|.++++++.+..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888888888899999999999999999887653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=190.70 Aligned_cols=443 Identities=14% Similarity=0.127 Sum_probs=327.1
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADAL 85 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 85 (604)
.+.|++++|.+.-...-+.+. .+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..|++++|+
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHH
Confidence 456777777776554433321 122323223333444444554444333333332 223567788888888889999999
Q ss_pred HHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHhC
Q 044872 86 KVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIV-RVLTACTQLGDLSTAKWIHGYVNEAG 161 (604)
Q Consensus 86 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g 161 (604)
.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+..... .+.......|++++|...+.++++..
T Consensus 137 ~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 137 ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 99887765 35678888889999999999999988888774 56554332 23333445788888888888887754
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHH
Q 044872 162 KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDI---VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVG 237 (604)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 237 (604)
. -=..+|+.|...+-..|++..|..-|++...-|+ ..|-.|...|-..+.+++|+..|.+.... .|+ ...+..
T Consensus 215 p-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gN 291 (966)
T KOG4626|consen 215 P-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGN 291 (966)
T ss_pred C-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccc
Confidence 2 2345788888888888999999999888876433 47888888888888999999888887663 564 455666
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCH
Q 044872 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 314 (604)
+...|-..|.++.|...+++.+..... -+..|+.|..++-..|++.+|.+.|.+... + -..+.+.|...|...|.+
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 666777888999999998888775422 367788888888888999999999888764 2 346778888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHH
Q 044872 315 KVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELI 392 (604)
Q Consensus 315 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 392 (604)
++|..+|....+ +.|.- ..++.|...|-++|++++|+..+++.. .++|+ ...|+.+...|-..|+.+.|.+.+
T Consensus 371 e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 371 EEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred hHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 999999988887 67765 578888888889999999999998887 67887 567888888899999999999888
Q ss_pred HhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 393 KSM-PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 393 ~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
.+. .+.|.- ...+.|...|...|+..+|+..+++.+.++|+.+.+|-.++.++----+|.+-.+.++++
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 877 677754 478888888999999999999999999999998888888887776666666644443333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-20 Score=211.90 Aligned_cols=449 Identities=12% Similarity=0.061 Sum_probs=306.9
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccH-----------------HHHHHHHHccCChHHHHHHHHHHHHhCCCCCh
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTF-----------------PFVLKACAREHDFQLGVRSHSLIVKAGLDCDE 65 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 65 (604)
..+.+.|+.++|...++++.+.. |+...+ ..+...+...|++++|.+.++.+.+.. +++.
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~ 146 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL 146 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh
Confidence 34678999999999999998865 443332 223345778899999999999998754 3332
Q ss_pred hH-HHHHHHHHHhcCChHHHHHHhccCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC--------------
Q 044872 66 FV-KTSLLNLYVHCGYLADALKVFDDIPD--K-NVVSWTAIISGYINEGNLEEAINMFRRLLHRGL-------------- 127 (604)
Q Consensus 66 ~~-~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------- 127 (604)
.. ...+.......|+.++|.+.|+++.. | +...+..+...+...|++++|++.|+++.....
T Consensus 147 ~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 147 DLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 21 11111222345999999999998865 2 566788899999999999999999998865321
Q ss_pred ----C--------------CChhhHH---------------------HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH
Q 044872 128 ----K--------------PDSFSIV---------------------RVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFV 168 (604)
Q Consensus 128 ----~--------------p~~~t~~---------------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 168 (604)
. |+...+. ....++...|++++|...++.+++.. +.+..+
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a 305 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEA 305 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 0 1110000 11233456788899999998888865 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--CCc---chHHHH------------HHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPE--KDI---VSWSSM------------IQGYASNGFPKEALDMFYNMQRENLKPE 231 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 231 (604)
+..|...|.+.|++++|+..|++..+ |+. ..|..+ ...+.+.|++++|+..|++..+.. +.+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 88889999999999999999888754 221 123222 345678899999999999988753 234
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------------cc
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD------------QV 299 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~ 299 (604)
...+..+...+...|++++|.+.++.+++.... +...+..+...|. .++.++|..+++.+.... ..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 556667778888889999999999988876432 3444455555553 345566666665543211 11
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHH------
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY------ 372 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------ 372 (604)
.+..+...+...|++++|++.|++..+ ..|+ ...+..+...+...|++++|...++.+.+...- +...+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN--DPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 233344555566666777776666666 3443 334455556666666666666666665532111 11111
Q ss_pred --------------------------------------HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044872 373 --------------------------------------GCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLH 414 (604)
Q Consensus 373 --------------------------------------~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 414 (604)
..+.+.+...|+.++|.++++.-| ++...+..+...+...
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHc
Confidence 123345566677777777777433 3445667788889999
Q ss_pred CChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 415 KKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 415 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=186.27 Aligned_cols=417 Identities=14% Similarity=0.152 Sum_probs=331.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCCh
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNL 112 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 112 (604)
|..-..+.|++..|++--..+-... +.+....-.+-..|.+..+.+.....-..... .-..+|..+...+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 4444455666666655333322211 11122222222455555555543332222111 2346788999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 113 EEAINMFRRLLHRGLKP-DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNV-FVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 113 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
++|+.+++.|++. +| ....|..+..++...|+.+.|.+.+...++.+ |+. .+.+.+.......|++++|...|.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999985 44 55689999999999999999999999998864 433 344556667777899999999988
Q ss_pred cCCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc
Q 044872 191 QMPE--KD-IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASSFMERNEFLSN 266 (604)
Q Consensus 191 ~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (604)
+..+ |. .+.|+.|...+-.+|+...|+..|++... +.|+ ...|..+-..+...+.++.|...+........ ..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cc
Confidence 8665 33 46899999999999999999999999876 4565 34677788888888888888888877766432 24
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKDKD---QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCG 342 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 342 (604)
..++..+...|...|.++.|...|++..+.+ ...|+.|..++-..|+..+|...|.+... ..|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 5667778888999999999999999987643 46899999999999999999999999988 66765 688899999
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDL 419 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~ 419 (604)
+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|..-+++. .++|+.. .++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999887 45676 567888999999999999999999988 8889855 99999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|.+.+.++++.+|.-..++..|+.+|-.+|+..+|+.-++...+..
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999988743
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-18 Score=189.90 Aligned_cols=211 Identities=10% Similarity=0.005 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 325 (604)
.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..
T Consensus 492 ~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 492 PGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred cHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444443332 3332233334444578888888888877653 334456666677788888888888888887
Q ss_pred HCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HH
Q 044872 326 KCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AI 402 (604)
Q Consensus 326 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 402 (604)
+. .|+. ..+..+.......|++++|...++... ...|+...+..+..++.+.|++++|.+.+++. ...|+ ..
T Consensus 570 ~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 570 QR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred hc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 74 3443 233333444556699999999999887 44677888888889999999999999999888 55665 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.+..+...+...|+.++|+..++++++.+|+++..+..++.++...|++++|...+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777788889999999999999999999999999999999999999999999999999998643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-18 Score=182.66 Aligned_cols=416 Identities=12% Similarity=0.006 Sum_probs=282.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCC
Q 044872 35 FVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGN 111 (604)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 111 (604)
.....+...|+++.|...|..+++. .|+...|..+...|.+.|++++|...++...+ .+...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4445566778888888888877764 45666777777778888888888887776543 245577777778888888
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 112 LEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
+++|+.-|......+.. +......++..... ..+........+.. +.+...+..+.. |......+.+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 88888777665543211 11111111111111 11222222222221 122222222222 2222122222221222
Q ss_pred CCCCCc---chHHHHHHHH---HhCCCchHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC
Q 044872 192 MPEKDI---VSWSSMIQGY---ASNGFPKEALDMFYNMQREN-LKPE-YYTMVGVLSACASLGALELGVWASSFMERNEF 263 (604)
Q Consensus 192 ~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (604)
..+.+. ..+..+...+ ...+.+++|++.|++....+ ..|+ ...+..+...+...|+++.|...++..++...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 111111 1111111111 23468999999999998764 3343 44566677777889999999999999987642
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGL 339 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 339 (604)
.+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+ +.|+ ...+..+
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~l 439 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQL 439 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHH
Confidence 2456777888899999999999999998764 3567888999999999999999999999988 5565 4667778
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-------I-VWGALLAG 410 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~ 410 (604)
..++...|++++|...|+...+. .+.+...++.+...|...|++++|.+.|++. ...|+. . .++..+..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88899999999999999998853 2334678888999999999999999999986 444421 1 12222223
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...|++++|...++++++++|++...+..++.++.+.|++++|.+.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445799999999999999999999889999999999999999999999998763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=181.58 Aligned_cols=287 Identities=13% Similarity=0.117 Sum_probs=180.3
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCC-C------cchHHHHHHHHHhCCCch
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEK-D------IVSWSSMIQGYASNGFPK 214 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~ 214 (604)
...|+++.|...+..+.+.+ +.+..++..+...|...|++++|..+++.+... + ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555543 223344555555555555555555555544331 1 123444455555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044872 215 EALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK 294 (604)
Q Consensus 215 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 294 (604)
+|..+|+++.+. . +.+..+++.++.+|.+.|++++|.+.|+.+.
T Consensus 125 ~A~~~~~~~l~~-----------------------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 125 RAEELFLQLVDE-----------------------------------G-DFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHHHcC-----------------------------------C-cchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 555555555432 1 1233444555555555555555555555553
Q ss_pred CCCc--------ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC
Q 044872 295 DKDQ--------VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 295 ~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
+.+. ..|..+...+.+.|++++|...|+++.+. .|+ ...+..+...+...|++++|.++|+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 3211 12344556667777788888888777763 343 345666667777788888888888877743
Q ss_pred CCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 366 TPM--IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 366 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
.|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|..+++++++..|++. .+..+.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 233 355677788888888888888888887 4567766677788888899999999999999988888765 454445
Q ss_pred HHHHh---cCChHHHHHHHHHHhhCCCccCCc
Q 044872 443 NIYSA---SHKWNDAAKIRSMMGDKGIQKIRG 471 (604)
Q Consensus 443 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 471 (604)
..+.. .|+.+++..++++|.+++++++|.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 44443 568899999999999888888876
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=181.97 Aligned_cols=282 Identities=13% Similarity=0.138 Sum_probs=135.0
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCC-C------cccHHHHHHHHHhCCChh
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDK-N------VVSWTAIISGYINEGNLE 113 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g~~~ 113 (604)
...|+++.|...+..+++.+ +.+..++..+...|...|++++|..+++.+... + ...|..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555542 123344555555555555555555555544331 1 123455555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 114 EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRN----VFVATSLVDLYAKCGNMEKARRVF 189 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~ 189 (604)
+|+.+|+++.+.. +++..++..+...+...|++++|.+.+..+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555431 22344555555555555555555555555554432221 112334444455555555555555
Q ss_pred ccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc
Q 044872 190 DQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSN 266 (604)
Q Consensus 190 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (604)
+++.+ | +...+..+...|.+.|++++|.+.|+++... +....
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------------------------~p~~~ 248 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----------------------------------DPEYL 248 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------------------------ChhhH
Confidence 55432 1 2234444455555555555555555555443 22212
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT 344 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 344 (604)
..+++.++.+|.+.|++++|...|+++.+ |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhh
Confidence 23334444455555555555555544432 3333334444455555555555555555544 2455555544444333
Q ss_pred c---cCcHHHHHHHHHHchh
Q 044872 345 H---AGLVDEGRQFFNSMSR 361 (604)
Q Consensus 345 ~---~g~~~~a~~~~~~~~~ 361 (604)
. .|+.+++...++.+.+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 2 2345555555555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-17 Score=177.33 Aligned_cols=399 Identities=10% Similarity=-0.031 Sum_probs=241.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCC---CCCcccHHHHHHH
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIP---DKNVVSWTAIISG 105 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 105 (604)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444556666778899999999988887632 3445568888888999999999999998843 3356678888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 044872 106 YINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKA 185 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 185 (604)
+...|++++|+..+++..+.. +.+.. +..+..++...|+.+.|...++.+++... .+..++..+..++...|..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 899999999999999988762 22444 77777788889999999999999988753 3566667788888888999999
Q ss_pred HHHHccCCCCCcc--------hHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHH
Q 044872 186 RRVFDQMPEKDIV--------SWSSMIQGYA-----SNGFP---KEALDMFYNMQRE-NLKPEYY-TMV----GVLSACA 243 (604)
Q Consensus 186 ~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~ 243 (604)
.+.++.... ++. ....++..+. ..+++ ++|++.++.+... ...|+.. .+. ..+.++.
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 998887765 211 1112222221 11223 6677777777653 2223221 111 1123344
Q ss_pred ccCchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-------ccHHHHHHHHHhCCCHH
Q 044872 244 SLGALELGVWASSFMERNEFL-SNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ-------VVWNAVVSGLSMNGYVK 315 (604)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~ 315 (604)
..++.++|...++.+.+.+.. |+. ....+...|...|++++|+..|+++.+.+. ..+..+..++.+.|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 556777777777777665422 221 122245567777777777777776643221 12344455666777777
Q ss_pred HHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh
Q 044872 316 VAFGVFGQLEKCGI-----------QPNG---NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR 381 (604)
Q Consensus 316 ~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 381 (604)
+|.++++++..... .|+. ..+..+...+...|+.++|++.++.+... .+.+...+..+..++..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 77777777665310 1121 12233334455555555555555555432 12234445555555555
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 382 SGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 55555555555554 33343 22444444445555555555555555555555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-17 Score=177.90 Aligned_cols=366 Identities=8% Similarity=-0.023 Sum_probs=278.8
Q ss_pred hcCChHHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHH
Q 044872 77 HCGYLADALKVFDDIPD------KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTA 150 (604)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 150 (604)
+..+++.-.-.|...++ .+..-...++..+.+.|++++|+.+++..+..... +...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 45566666666665554 13344556777888999999999999998876443 334455555666779999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 044872 151 KWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQREN 227 (604)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (604)
...++.+.+.. +.+...+..+...+...|++++|...|++..+ .+...|..+...+.+.|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998875 34567788889999999999999999988765 345678888999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHH
Q 044872 228 LKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAV 304 (604)
Q Consensus 228 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 304 (604)
..+. ..+.. +..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3222 22222 334778899999999999887765444455556667788899999999999998765 255677888
Q ss_pred HHHHHhCCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 305 VSGLSMNGYVKV----AFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 305 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
...|...|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++...+. .|+ ...+..+...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 889999999886 8999999988 5565 467888888999999999999999998853 454 5567778899
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEPNAIVW-GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999988 456765443 3456678899999999999999999998764 234455555
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+....+
T Consensus 396 ~~~~~~~ 402 (656)
T PRK15174 396 ALDGQIS 402 (656)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-16 Score=172.60 Aligned_cols=447 Identities=12% Similarity=0.064 Sum_probs=302.6
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAR-EHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYL 81 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 81 (604)
..|.+.|++++|+.++.++.+.++. +..-...+-.++.. .++ +.+..++.. .+..++.++.++...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCH
Confidence 3456667777777777777776433 23334444444544 244 555554332 2334666677777777777777
Q ss_pred HHHHHHhccCCC-----CCcccHH------------------------------HHHHHHHhCCChhHHHHHH-------
Q 044872 82 ADALKVFDDIPD-----KNVVSWT------------------------------AIISGYINEGNLEEAINMF------- 119 (604)
Q Consensus 82 ~~A~~~f~~~~~-----~~~~~~~------------------------------~li~~~~~~g~~~~A~~~~------- 119 (604)
++|.+++++++. |...+|- .++.-+.+.+.++.+.++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 777777776652 1111111 1122333344444333321
Q ss_pred ----------------------HHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-C-CCCChhHHHHHHHH
Q 044872 120 ----------------------RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA-G-KGRNVFVATSLVDL 175 (604)
Q Consensus 120 ----------------------~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~ 175 (604)
+.|.+. .+-+......+.-.....|+.++|.+++...... + -..+....+-|+..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 111111 0001112222222234556677777777666552 1 12244556678888
Q ss_pred HHhcCC---HHHHHHHH------------c-------------cCCC---C--CcchHHHHHHHHHhCCCchHHHHHHHH
Q 044872 176 YAKCGN---MEKARRVF------------D-------------QMPE---K--DIVSWSSMIQGYASNGFPKEALDMFYN 222 (604)
Q Consensus 176 y~~~g~---~~~A~~~~------------~-------------~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (604)
|.+.+. ..+|..+- . .... + +...|..+..++.. ++.++|+..|.+
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 888876 33333331 1 1111 2 45567777777776 889999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHH
Q 044872 223 MQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWN 302 (604)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 302 (604)
.... .|+......+..++...|+++.|...++.+.... |+...+..+...+.+.|++++|...|++..+.++..++
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~ 577 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA 577 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence 7764 4676555455556678999999999999876653 33344566778889999999999999988775544444
Q ss_pred HHHH---HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 303 AVVS---GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 303 ~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
.... .....|++++|+..+++..+ ..|+...+..+..++.+.|++++|...++...+ ..|+ ...+..+...
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3333 33445999999999999998 668888899999999999999999999999984 4564 6677888889
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++.......+++..+..+++.|.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999987 5556 456899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 044872 457 IRSMMGDKGI 466 (604)
Q Consensus 457 ~~~~m~~~~~ 466 (604)
-+++...-++
T Consensus 733 ~~~r~~~~~~ 742 (987)
T PRK09782 733 EVGRRWTFSF 742 (987)
T ss_pred HHHHHhhcCc
Confidence 8887766544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-17 Score=176.71 Aligned_cols=395 Identities=11% Similarity=0.049 Sum_probs=298.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 044872 63 CDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLT 139 (604)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 139 (604)
.++....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|+.+|++.+... +.+...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444455566777889999999999988764 344458999999999999999999999998752 234556677778
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHH
Q 044872 140 ACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 140 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 216 (604)
.+...|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 8899999999999999999874 44556 88899999999999999999999865 3 445667788888899999999
Q ss_pred HHHHHHHHHCCCCCCHH------HHHHHHHHHH-----ccCch---HHHHHHHHHHHHc-CCCCch--hHHHH---HHHH
Q 044872 217 LDMFYNMQRENLKPEYY------TMVGVLSACA-----SLGAL---ELGVWASSFMERN-EFLSNP--VLGTT---LIDM 276 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~--~~~~~---li~~ 276 (604)
++.++.... .|+.. .....+.... ..+.+ +.|...++.+.+. ...|+. ....+ .+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 999876653 33320 1111222221 11233 6677788787754 222322 11111 1234
Q ss_pred HHhcCCHHHHHHHHHhcCCCC--ccc--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccC
Q 044872 277 YAKCGRMAQACKVFREMKDKD--QVV--WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-----GNTFVGLLCGCTHAG 347 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g 347 (604)
+...|++++|...|+.+.+.+ ... -..+...|...|++++|+..|+++.+.. |. ......+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcc
Confidence 457799999999999998643 111 1225678999999999999999987643 32 244566677889999
Q ss_pred cHHHHHHHHHHchhhcC----------CCCc---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 348 LVDEGRQFFNSMSRVFS----------LTPM---IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 348 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
++++|.++++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999885311 1123 234556778899999999999999998 4445 5568899999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
..|++++|++.++++++++|+++..+..++..+...|++++|..+++.+.+..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-16 Score=171.55 Aligned_cols=433 Identities=14% Similarity=0.025 Sum_probs=296.7
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.|.+.|++++|+..|++.+.. .|+...|..+..++...|+++.|...+..+++.. +.+...+..+...|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 467889999999999999874 5677889999999999999999999999998864 3346678889999999999999
Q ss_pred HHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPDK---NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|..-|...... +......++..+.. ..+........... +++...+..+...+ ..........-+....+
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 285 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE- 285 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhhhcccc-
Confidence 99887654321 11111112211111 22333333333321 12222222222211 11111111111111111
Q ss_pred CCCCCh-hHHHHHHHH---HHhcCCHHHHHHHHccCCCC------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 044872 161 GKGRNV-FVATSLVDL---YAKCGNMEKARRVFDQMPEK------DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230 (604)
Q Consensus 161 g~~~~~-~~~~~li~~---y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 230 (604)
..+.. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|
T Consensus 286 -~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 286 -LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred -cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 11110 011111111 12346889999999887542 3456888888899999999999999998874 45
Q ss_pred C-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHH
Q 044872 231 E-YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVS 306 (604)
Q Consensus 231 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 306 (604)
+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 4 5577788888889999999999999998765 335778888999999999999999999988653 4566777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch--------HHHHHHHH
Q 044872 307 GLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI--------EHYGCMVD 377 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~ 377 (604)
.+.+.|++++|+..|++... ..|+ ...+..+..++...|++++|...|+...+. .|+. ..++....
T Consensus 442 ~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHH
Confidence 99999999999999999987 4454 577888888999999999999999988742 3321 11222223
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHH
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 455 (604)
.+...|++++|.+++++. ...|+. ..+..+...+...|++++|...|+++.++.+..... .....+.+|.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~ 588 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEAT 588 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHH
Confidence 344579999999999986 555654 478889999999999999999999999887754321 1233445566
Q ss_pred HHHHHHhh
Q 044872 456 KIRSMMGD 463 (604)
Q Consensus 456 ~~~~~m~~ 463 (604)
++....++
T Consensus 589 ~~~~~~~~ 596 (615)
T TIGR00990 589 RTQIQVQE 596 (615)
T ss_pred HHHHHHHH
Confidence 65554444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-16 Score=165.44 Aligned_cols=421 Identities=11% Similarity=0.021 Sum_probs=228.6
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTN--FTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.+.|++++|++.|++.++.. |+. ..+ .++..+...|+.++|...++..+.. -........++...|...|++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 46677777777777776643 332 223 5556666667777777766666510 11112222223446666677777
Q ss_pred HHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.++|+++.+ .|...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 7777766654 23445556666666677777777777766654 344444433333333344554466667766666
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchH--HHHHHHHHh---------CCC---chHHHHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSW--SSMIQGYAS---------NGF---PKEALDMFYNM 223 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~--~~li~~~~~---------~g~---~~~A~~~~~~m 223 (604)
. +.+...+..++....+.|-...|.++..+-+. +....| ...+.-.++ .++ .+.|+.-++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 33555666666666777776666666655442 000000 000000111 111 23344444444
Q ss_pred HH-CCCCCCHH-----HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044872 224 QR-ENLKPEYY-----TMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD 297 (604)
Q Consensus 224 ~~-~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 297 (604)
.. .+-.|... ...-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|+.+|+++...+
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 43 11123211 1112344556666667777777776666655455566666777777777777777776653311
Q ss_pred ---------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CC--CHHH-HHHHHHHHhccCcHHHHHH
Q 044872 298 ---------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-----------QP--NGNT-FVGLLCGCTHAGLVDEGRQ 354 (604)
Q Consensus 298 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~t-~~~ll~a~~~~g~~~~a~~ 354 (604)
......|.-+|...+++++|..+++++.+.-. .| |-.. +..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 11234566666667777777777776665211 12 2222 2233445566666666766
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
.++.+.. .-+-|......+.+++...|.+.+|.+.++.. ...|+. .+......++...+++++|..+.+.+.+..|
T Consensus 438 ~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 6666653 22334556666666666666666666666555 334433 3445555556666666666666666666666
Q ss_pred CCc
Q 044872 433 WNS 435 (604)
Q Consensus 433 ~~~ 435 (604)
+++
T Consensus 516 e~~ 518 (822)
T PRK14574 516 EDI 518 (822)
T ss_pred Cch
Confidence 665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-15 Score=162.51 Aligned_cols=427 Identities=13% Similarity=0.051 Sum_probs=312.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHH-HH--HHHHHhC
Q 044872 33 FPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWT-AI--ISGYINE 109 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~-~l--i~~~~~~ 109 (604)
|...+. ..+.|++..|...+.++++........++ .++..+...|+.++|+..+++...|+...+. .+ ...|...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 555444 45889999999999999886533222344 8888899999999999999998876444443 33 4577888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVF 189 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 189 (604)
|++++|+++|+++.+.... +...+..+...+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999986432 4566677778889999999999999998876 445555566666665667776799999
Q ss_pred ccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----HccCch---HHHH
Q 044872 190 DQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYT------MVGVLSAC-----ASLGAL---ELGV 252 (604)
Q Consensus 190 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~~~-----~~~~~~---~~a~ 252 (604)
+++.+ | +...+..+.....+.|-...|+++..+-... +.|...- ....++.- ....++ +.+.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 99875 4 4556788889999999999999876653211 1111110 11111110 011223 3344
Q ss_pred HHHHHHHH-cCCCCc--hhHHHHH---HHHHHhcCCHHHHHHHHHhcCCCC----cccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 253 WASSFMER-NEFLSN--PVLGTTL---IDMYAKCGRMAQACKVFREMKDKD----QVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 253 ~~~~~~~~-~~~~~~--~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
.-++.+.. .+..|. +....+. +-++.+.|++.++.+.|+.+.... ..+-.++..+|...+++++|+.+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 44444443 122222 1223333 446678999999999999998532 2345668889999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcC----------CCCc---hHHHHHHHHHHhhcCC
Q 044872 323 QLEKCG-----IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS----------LTPM---IEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 323 ~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~ 384 (604)
++.... ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 997643 122334457888999999999999999999986311 0122 2344556788899999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 385 LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+..++|++..+....+..+...|+|++|..+.+.+.
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999998 4445 677899999999999999999999999999999999999999999999999999999998887
Q ss_pred hCC
Q 044872 463 DKG 465 (604)
Q Consensus 463 ~~~ 465 (604)
+..
T Consensus 512 ~~~ 514 (822)
T PRK14574 512 SRS 514 (822)
T ss_pred hhC
Confidence 643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-16 Score=170.69 Aligned_cols=393 Identities=10% Similarity=-0.021 Sum_probs=257.3
Q ss_pred hhhcCCchHHHHHHHHHHhCC--CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEG--FLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
+.++.+++.---.|....+.- -.-+..-...++..+.+.|+++.|..+++.++.....+ ......++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 344555665555555443321 11234445566677778888888888888887765443 333444445556688888
Q ss_pred HHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 044872 83 DALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKP-DSFSIVRVLTACTQLGDLSTAKWIHGYVN 158 (604)
Q Consensus 83 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 158 (604)
+|...|+++.. .+...|..+...+.+.|++++|+..|++.... .| +...+..+...+...|++++|...+..+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 88888887654 35567777788888888888888888888774 33 34566777777888888888888888776
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH
Q 044872 159 EAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEK----DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYT 234 (604)
Q Consensus 159 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 234 (604)
.....+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..|++..... +.+...
T Consensus 172 ~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 654332 3333333 3467788888888888876542 22334445667788888888888888887653 224556
Q ss_pred HHHHHHHHHccCchHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHH
Q 044872 235 MVGVLSACASLGALEL----GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSG 307 (604)
Q Consensus 235 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 307 (604)
+..+...+...|++++ |...++.+.+... .+..++..+...+.+.|++++|...+++... | +...+..+...
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6667777788888775 6788888777643 3567778888888888888888888887764 2 34566777788
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC--c-hHHHHHHHHHHhhcC
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGNT-FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP--M-IEHYGCMVDLLGRSG 383 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~-~~~~~~li~~~~~~g 383 (604)
|.+.|++++|+..|+++.. ..|+... +..+..++...|+.++|...|+...+...-.+ + ......+-+++...+
T Consensus 328 l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcC
Confidence 8888888888888888877 3455433 33345667888888888888887764311111 0 122333444445555
Q ss_pred CHHHHHHHHHhCC---CCCCHHHHHH
Q 044872 384 QLDEAHELIKSMP---MEPNAIVWGA 406 (604)
Q Consensus 384 ~~~~A~~~~~~~~---~~p~~~~~~~ 406 (604)
..++......+.. ...|..+|+.
T Consensus 406 ~~~~~~~W~~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 406 LPPERLDWAWEVAGRQSGIERDEWER 431 (656)
T ss_pred CccchhhHHHHHhcccccCChHHHHH
Confidence 5554445555551 1235555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-14 Score=146.61 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=119.2
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHchhhc
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTH------------AGLVDEGRQFFNSMSRVF 363 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~ 363 (604)
++..|+-+...+.....+..|.+-|...... ...+|..+..+|.+.|.. .+..++|+++|..+.+
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-- 640 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-- 640 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--
Confidence 3444444444555555555555544443321 122566666666664433 3456788888888874
Q ss_pred CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-C-CCCchhHH
Q 044872 364 SLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL-E-PWNSGNYV 439 (604)
Q Consensus 364 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-p~~~~~~~ 439 (604)
.-+.|...-+-+.-.++..|++.+|..+|.+. ....+..+|-.+...|...|++-.|+++|+..++. . .+++....
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 23446777788888899999999999999988 22335668999999999999999999999998863 3 45677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 440 LLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.|+.++.+.|+|.+|.+.........
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988877643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-13 Score=142.41 Aligned_cols=367 Identities=13% Similarity=0.087 Sum_probs=248.9
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLK--PDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS 171 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (604)
.|++..|.|.+-|.-.|++..+..+...+...-.. .-...|-.+.+++-..|+++.|...|-+..+.....-+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46677777777777778888888877777654211 1223466777777788888888888877766543222444556
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC--C-CcchHHHHHHHHHhCC----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 172 LVDLYAKCGNMEKARRVFDQMPE--K-DIVSWSSMIQGYASNG----FPKEALDMFYNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
|..+|.+.|+++.|...|+.+.. | +..+...|...|+..+ ..+.|..++.+..+.- +.|...|..+...+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 77788888888888888877654 2 3345555666666654 3455666655555432 2345555555554443
Q ss_pred cCchHHHHHHHHHH----HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ccc------cHHHHHHH
Q 044872 245 LGALELGVWASSFM----ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-------DQV------VWNAVVSG 307 (604)
Q Consensus 245 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~------~~~~li~~ 307 (604)
. +......++..+ ...+-.+.+.+.|.+...+...|+++.|...|+..... |.. +--.+...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 3 333334444443 34555577888899999999999999999999876532 221 12224455
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 386 (604)
+-..++++.|.+.|..... -.|..+ .|..++......+...+|...+..... ....++..++.+.+.+.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhc
Confidence 6667789999999999888 457664 344444333345778888888888775 33445555666777888888888
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 387 EAHELIKSM----PMEPNAIVWGALLAGCRL------------HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 387 ~A~~~~~~~----~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
.|.+-|+.+ ...+|..+.-+|.+.|.+ .+..++|+++|.++++.+|.|..+-+-++-+++..|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 888855544 334677777777776532 2457889999999999999998888889999999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
+.+|..+|.+.++...
T Consensus 662 ~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS 677 (1018)
T ss_pred chHHHHHHHHHHHHHh
Confidence 9999999999998654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-13 Score=128.39 Aligned_cols=295 Identities=17% Similarity=0.229 Sum_probs=218.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-----------------------------hcCChH
Q 044872 32 TFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYV-----------------------------HCGYLA 82 (604)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-----------------------------~~g~~~ 82 (604)
+=+.|++. ...|.+..+.-+++.|...|.+.+..+-..|...-+ +.|++
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v- 195 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV- 195 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH-
Confidence 44555543 345677777778888877776666655555443321 11222
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 83 DALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 83 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
|.-+|+. ..++..++..||.|+++-...+.|.+++++-.....+.+..+||.++.+-+ +..++.+..+|+...+
T Consensus 196 -AdL~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 -ADLLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKM 269 (625)
T ss_pred -HHHHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhc
Confidence 3333333 335778999999999999999999999999998888999999999998765 3344889999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHH----ccCC----CCCcchHHHHHHHHHhCCCchH-HHHHHHHHHHC----CCC
Q 044872 163 GRNVFVATSLVDLYAKCGNMEKARRVF----DQMP----EKDIVSWSSMIQGYASNGFPKE-ALDMFYNMQRE----NLK 229 (604)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~ 229 (604)
.||..++|+++.+..+.|+++.|++.+ .+|+ +|...+|..+|..+.+.++..+ |..++.++... .++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999999998876654 4443 4888999999999999888755 55555555442 233
Q ss_pred ---C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 044872 230 ---P-EYYTMVGVLSACASLGALELGVWASSFMERNE----FLSN---PVLGTTLIDMYAKCGRMAQACKVFREMKD--- 295 (604)
Q Consensus 230 ---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 295 (604)
| |..-|...+..|.+..+.+.|.+++....... +.++ ...|..+..+.+....++.-...|+.|..
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 3 45678889999999999999999998876421 2222 34556677788888889999999998875
Q ss_pred -CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 296 -KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 296 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
|+..+-..++.+....|+++-.-+++..++..|..-+..
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 466666677778888888888888888888776444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-13 Score=128.54 Aligned_cols=441 Identities=13% Similarity=0.098 Sum_probs=290.0
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhc
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPF-VLKACAREHDFQLGVRSHSLIVKAGLDCDE----FVKTSLLNLYVHC 78 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~ 78 (604)
.|..+..+.+|+..|+-+.+...-|+.-.+.. +-..+.+.+.+.+|...+...+..-...+. .+.+.+.-.+.+.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 35556667778888887777666666554332 233455666788888888777665322222 2344444556788
Q ss_pred CChHHHHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC------------hhhHHHHHH-----
Q 044872 79 GYLADALKVFDDIPD--KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD------------SFSIVRVLT----- 139 (604)
Q Consensus 79 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~t~~~ll~----- 139 (604)
|++++|..-|+...+ ||..+--.|+-.+.--|+.++..+.|.+|+.-...|| ....+..++
T Consensus 290 gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred ccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 899999999887543 5655444445555567888888888888876433232 222222221
Q ss_pred HHhcCC--ChHHHHHHHHHHHHhCCCCChh-------------HH--------HHHHHHHHhcCCHHHHHHHHccCCCCC
Q 044872 140 ACTQLG--DLSTAKWIHGYVNEAGKGRNVF-------------VA--------TSLVDLYAKCGNMEKARRVFDQMPEKD 196 (604)
Q Consensus 140 ~~~~~g--~~~~a~~~~~~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~~~~~~~~~ 196 (604)
-.-+.+ +.+++.-.-..++.--+.|+-. .+ -.-..-|.+.|+++.|.++++-...+|
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd 449 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD 449 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc
Confidence 111111 1111111111111111111110 00 111235788899999998888777655
Q ss_pred cchHHH----H-HHHHHhC-CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 197 IVSWSS----M-IQGYASN-GFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 197 ~~~~~~----l-i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
..+-.+ | .--|.+. .++.+|.++-+..+... +-|....+.--......|+++.|...+.+.+...-.-....|
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 443222 2 2223333 34555655554443321 112222222222334568999999999999887644444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMK---DKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHA 346 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 346 (604)
|. .-.+-+.|++++|+..|-++. ..++...-.+...|....+...|++++.+... +.| |...+..|...|-+.
T Consensus 529 ni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 NI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQE 605 (840)
T ss_pred Hh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcc
Confidence 43 335778999999999997764 35667777788889999999999999988766 455 667888888999999
Q ss_pred CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHH
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGC-RLHKKTDLAEHVL 424 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~ 424 (604)
|+-.+|.+++-.--+ -++.+.++..-|...|....-+++|..+|++. -+.|+..-|..++..| ++.|++++|..++
T Consensus 606 gdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999998775442 45667888888888899999999999999998 5689999999999876 6889999999999
Q ss_pred HHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 425 NQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 425 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+..-...|.+...+..|..++...|-
T Consensus 684 k~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999888874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-11 Score=119.87 Aligned_cols=369 Identities=12% Similarity=0.048 Sum_probs=230.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 044872 98 SWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYA 177 (604)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 177 (604)
+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..+....+++.++..- +.....|-....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4555555566666666666666655553 12233444444444445566666666666665543 223444555555556
Q ss_pred hcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 044872 178 KCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWA 254 (604)
Q Consensus 178 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 254 (604)
..|++..|+.++.+.-+ .+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---+++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 66666666666665543 23445666666666666677777776666543 34544444444444445666666666
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 044872 255 SSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP 331 (604)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 331 (604)
++..++.- +.-...|-.+.+.+-..++++.|...|..-.+ | .+..|-.+...--+.|....|..++++.+-.+ +-
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 66665542 22344555666666666667766666655443 2 34456666555556666777777777666543 22
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044872 332 NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGC 411 (604)
Q Consensus 332 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 411 (604)
|...|...+..-.+.|+.+.|........+ .++.+-..|.--|.+..+.++-..+.+.+++.. .|+.+..++...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 445666666666777777777766666664 334445566666666666666555555555553 3555556666677
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEEC
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVD 478 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 478 (604)
....+++.|.+.|.+++..+|++..+|..+-..+.+.|.-++-.+++++.... .|.-|..|+.+.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 78889999999999999999999999999999999999999999999887663 455667775443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-11 Score=125.89 Aligned_cols=450 Identities=14% Similarity=0.064 Sum_probs=267.9
Q ss_pred cCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 044872 8 NDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKV 87 (604)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (604)
.|++++|.+++.+..+..+. +...|.+|...+-..|+.+++...+-.+.-. -+.|...|..+.....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 39999999999999988655 7778999999999999999888766544333 345678899999999999999999999
Q ss_pred hccCCCCCcccHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 88 FDDIPDKNVVSWTA---IISGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 88 f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.+..+.++.-|-. -+..|-+.|+...|++.|.++.....+.|.. +.-.+++.+...++-+.|.++++.....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99887654444444 3578889999999999999999864422222 2333456677777778888888877763
Q ss_pred C-CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC----CC----------------------cchHHH----HHHHHHh
Q 044872 161 G-KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE----KD----------------------IVSWSS----MIQGYAS 209 (604)
Q Consensus 161 g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~~----li~~~~~ 209 (604)
+ -..+...++.++.+|.+..+++.|......+.. +| ..+|+. +.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 3 234556788899999999988888776544322 11 111111 1112222
Q ss_pred CCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044872 210 NGFPKEALDMFYNMQRENLKP--EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQAC 287 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 287 (604)
....+....+........+.| +...|.-+..++.+.|.+..|..++..+......-+..+|-.+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 222222222222233333222 333455555566666666666666666655544444555555666666666666666
Q ss_pred HHHHhcCCCCcc---cHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044872 288 KVFREMKDKDQV---VWNAVVSGLSMNGYVKVAFGVFGQLEK--------CGIQPNGNTFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 288 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
..|+.+..-++. .--+|-+.+.+.|+.++|++.+..+.. .+..|+..........+...|+.++-..+-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666655442222 222333445556666666666555321 122333322222333333334333322211
Q ss_pred HHchhh--------------------------------------------------------------cCCCCc--hHHH
Q 044872 357 NSMSRV--------------------------------------------------------------FSLTPM--IEHY 372 (604)
Q Consensus 357 ~~~~~~--------------------------------------------------------------~~~~p~--~~~~ 372 (604)
..|... .++.-+ -..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 111100 011111 1234
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-C----CCCCH-H-H-HHHHHHHHHhcCChHHHHHHHHHHHcc-----CCCCchhHH
Q 044872 373 GCMVDLLGRSGQLDEAHELIKSM-P----MEPNA-I-V-WGALLAGCRLHKKTDLAEHVLNQLIAL-----EPWNSGNYV 439 (604)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~-~----~~p~~-~-~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~ 439 (604)
.-++..+.+.|++++|+.+...+ . ..++. . . =...+.++...+++..|...++-++.. +|.-...|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 55667888999999999988776 1 11222 1 2 233455677889999999999988865 555555666
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 044872 440 LLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~ 459 (604)
...+...+.|+-.--.+.+.
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~ 729 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIM 729 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555666654333333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-10 Score=113.83 Aligned_cols=421 Identities=12% Similarity=0.072 Sum_probs=330.0
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHH
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAIN 117 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 117 (604)
....+.+.|+-++..+++.- +.+...|.+ |++..-++.|.++++...+ .+...|.+-...=-.+|+.+....
T Consensus 387 VelE~~~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34456666888888877753 444444544 4555677888888776544 477788877777778898888888
Q ss_pred HHHH----HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 118 MFRR----LLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR--NVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 118 ~~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
++.+ +...|+..+..-|..=..+|-..|..-.+..|....+..|++. --.+|+.-.+.|.+.+.++-|+.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 7765 3457888898889888889999999999999999988888754 346888888999999999999999988
Q ss_pred CCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchh
Q 044872 192 MPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPV 268 (604)
Q Consensus 192 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 268 (604)
..+ .+...|...+..--..|..++-..+|++.... ++-....+.....-.-..|+...|+.++..+.+.... +..
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 765 45677888887777789999999999998875 2223334444444555679999999999999887644 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 044872 269 LGTTLIDMYAKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTH 345 (604)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 345 (604)
++-+-+.......+++.|..+|.+... +....|.--+...--.+..++|++++++.++ .-|+. ..|..+...+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHH
Confidence 888888999999999999999998764 5667777777766778999999999999988 56776 467777788999
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
.++++.|...|..=.+ .++-.+..|-.|...=.+.|.+-.|..++++. ..+.+...|-..+..-.++|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998886653 33445678888888888999999999999988 3334677999999999999999999999
Q ss_pred HHHHHccCCCC------------------------------chhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCcee
Q 044872 424 LNQLIALEPWN------------------------------SGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCS 473 (604)
Q Consensus 424 ~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s 473 (604)
..++++.-|++ +.....++.++....+++.|++.|.+....+ ++.|-.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~ 853 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDA 853 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchH
Confidence 88888765654 3456667888999999999999999988744 445555
Q ss_pred E
Q 044872 474 W 474 (604)
Q Consensus 474 ~ 474 (604)
|
T Consensus 854 w 854 (913)
T KOG0495|consen 854 W 854 (913)
T ss_pred H
Confidence 6
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-15 Score=142.26 Aligned_cols=255 Identities=16% Similarity=0.134 Sum_probs=112.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGV-LSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGR 282 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 282 (604)
...+.+.|++++|++++++......+|+...|-.+ ...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34445555555555555433332212333333322 22333455566666666666554433 44556666666 67888
Q ss_pred HHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 044872 283 MAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG-IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359 (604)
Q Consensus 283 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 359 (604)
+++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888876643 466778888888999999999999999987633 3446667778888899999999999999999
Q ss_pred hhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 360 SRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 360 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.+. .|+ ......++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++|...+++..+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 853 564 777888999999999999988888776 22345568899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
....+++++...|+.++|.+++++...
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-11 Score=126.91 Aligned_cols=326 Identities=16% Similarity=0.129 Sum_probs=189.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccC---CCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQM---PEKDIVSWSSMIQGYASNGFPKEALDMFY 221 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (604)
|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-.. ...|...|-.+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555543 234444555555555555555554443322 22344445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhcCC--
Q 044872 222 NMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG----TTLIDMYAKCGRMAQACKVFREMKD-- 295 (604)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~-- 295 (604)
+..+.. +++...+---...|-+.|+...|..-+.++.......|..-. ...+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 554432 222222333334444555555555555555443322221111 1123334444444555555554433
Q ss_pred C---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHHhc
Q 044872 296 K---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---------------------------IQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 296 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~~ 345 (604)
. +...++.++..|.....++.|......+.... +.++... ..+.-+..+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 1 22345555555556666666665555554411 2222222 112223333
Q ss_pred cCcHHHHHHHHHHchhhcCCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTP--MIEHYGCMVDLLGRSGQLDEAHELIKSM---PMEPNAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a 420 (604)
....+....+....... .+.| +...|.-+.++|...|++.+|+.+|..+ +...+...|-.+...|...|.++.|
T Consensus 390 L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 33333333333333332 4333 4678889999999999999999999998 2223577999999999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
.+.|++++.+.|++..+-..|+.+|.+.|+.++|.+++..+..-+-+..+++.|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999887444333455666
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-11 Score=112.26 Aligned_cols=402 Identities=12% Similarity=0.096 Sum_probs=304.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 044872 66 FVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACT 142 (604)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 142 (604)
..|-.-...=..++++..|+.+|++... ++...|-..+..=.++.....|..++++....=+..|.. |---+..=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH
Confidence 3333333333345778899999998765 677889999999999999999999999998753333333 333333445
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccC--CCCCcchHHHHHHHHHhCCCchHHHHHH
Q 044872 143 QLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQM--PEKDIVSWSSMIQGYASNGFPKEALDMF 220 (604)
Q Consensus 143 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 220 (604)
..|++..|.++|+.-.+ ..|+...|++.|+.=.+-..++.|+.++++. ..|++.+|--...--.++|+..-|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 67999999999998876 5799999999999999999999999999986 4699999999888889999999999999
Q ss_pred HHHHHC-CC-CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH-------
Q 044872 221 YNMQRE-NL-KPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS-NPVLGTTLIDMYAKCGRMAQACKVF------- 290 (604)
Q Consensus 221 ~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~------- 290 (604)
....+. |- .-+...|++...--.+...++.|.-++...++.=... ....|..+...--+-|+....+...
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 887763 11 1123344444444456778899999999998764332 2456666666556677765554432
Q ss_pred -HhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHH
Q 044872 291 -REMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-------NTFVGLLCGC---THAGLVDEGRQFF 356 (604)
Q Consensus 291 -~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~ 356 (604)
+.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+=-+| ....+++.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 233333 5567777777777889999999999999875 66632 1222222222 3468899999999
Q ss_pred HHchhhcCCCCc-hHHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 357 NSMSRVFSLTPM-IEHYGCMVDLL----GRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 357 ~~~~~~~~~~p~-~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
+...+ +.|. ..++.-+--+| .|+.++..|.+++... |.-|...++...|..-.+.++++....++++.++.
T Consensus 390 q~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 98884 4554 55665554444 4789999999999876 88899999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 431 EPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
+|.+..++...+..-...|++|.|+.+|....+....-.|..-|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999999999999999999876555565556
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-10 Score=110.62 Aligned_cols=395 Identities=12% Similarity=0.121 Sum_probs=234.2
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
.++++..|.++|++.+..+.+ +...|...+..-.+...+..|+.+++.++..-...| ..|-.-+.|=-..|.+..|++
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 356677899999999876533 666677777777788889999999999888633323 334444555556689999999
Q ss_pred HhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-
Q 044872 87 VFDDIP--DKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA-GK- 162 (604)
Q Consensus 87 ~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~- 162 (604)
+|++-. +|+..+|++.|..=.+-..++.|..+|++..- +.|+..+|....+.=.+.|....+..+++.+++. |-
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 998754 48999999999999999999999999999876 5689999988888888899999999999888764 21
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHccC----CCC-------------------------------------------
Q 044872 163 GRNVFVATSLVDLYAKCGNMEKARRVFDQM----PEK------------------------------------------- 195 (604)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----~~~------------------------------------------- 195 (604)
..+...++++...=.++..++.|.-+|+-. +..
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 123345666666666677777777776432 221
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCchHHHHHHHHHHHHcCCCC
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEY-------YTMVGVLSAC---ASLGALELGVWASSFMERNEFLS 265 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~ 265 (604)
|-.+|-..+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.+.+++...++. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 2223444444444455555555555555443 33311 1111111111 2334555555555555541 122
Q ss_pred chhHHHHHHHHH----HhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 044872 266 NPVLGTTLIDMY----AKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVG 338 (604)
Q Consensus 266 ~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 338 (604)
...++.-+=-+| .++.++..|.+++....- |...++...|..-.+.++++....+|++.++ ..| |..++..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence 233333332222 245555555555554432 3344444455555555556666666666655 334 3345555
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLA 409 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 409 (604)
....-...|+.+.|..+|+.+.+...+......|.+.|+.=...|.++.|..+++.+ ...+...+|-++..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 554445556666666666655543222222334555555555566666666666555 22333445554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-11 Score=115.55 Aligned_cols=213 Identities=18% Similarity=0.189 Sum_probs=168.6
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHH
Q 044872 245 LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVF 321 (604)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 321 (604)
.|+.-.+..-++.+++....++. .|--+..+|....+.++..+.|+...+ .|+.+|..-...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666777777777776544332 255566678888888888888887764 35667777777777778899999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 044872 322 GQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP 399 (604)
Q Consensus 322 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 399 (604)
++.+. +.|+. ..|..+..+..+.+.++++...|+..+++ ++.-+++|+.....+..+++++.|.+.|+.. .+.|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 67754 67888888888999999999999999974 4555788999999999999999999999887 4444
Q ss_pred C---------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 N---------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+ +.+-.+++.. .-.+++..|..+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 2233333333 2348999999999999999999999999999999999999999999997754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-12 Score=120.84 Aligned_cols=423 Identities=14% Similarity=0.129 Sum_probs=278.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHhccC----CCCC----cccHHHHHHHH
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFV-KTSLLNLYVHCGYLADALKVFDDI----PDKN----VVSWTAIISGY 106 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~~----~~~~----~~~~~~li~~~ 106 (604)
|.+.|.......+|+..++-+++...-|+.-. -..+.+.|.+...+.+|.+.++.. +.-+ +...|.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33444445567788888888888776665433 233456777888899999887543 3212 22345555567
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC------------ChhHHHHHH-
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR------------NVFVATSLV- 173 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~------------~~~~~~~li- 173 (604)
.+.|.++.|+..|+...+. .|+..+-..++-.+...|+-++.++.|..++.....+ +....|.-+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 8899999999999998774 6787776666666667899999999999998754322 222222221
Q ss_pred ----HHHHhcCC--HHHHH----HHHccCCCCCcc---hHH------------------HHHHHHHhCCCchHHHHHHHH
Q 044872 174 ----DLYAKCGN--MEKAR----RVFDQMPEKDIV---SWS------------------SMIQGYASNGFPKEALDMFYN 222 (604)
Q Consensus 174 ----~~y~~~g~--~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~ 222 (604)
.-.-+... .+++. ++..-+..||-. -|. .-...|.++|+++.|+++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 11111111 11221 222222223211 111 112357899999999999988
Q ss_pred HHHCCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc
Q 044872 223 MQRENLKPEYYTMV--GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300 (604)
Q Consensus 223 m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 300 (604)
..+..-+.-...-+ .++.-...-.++..|.++-+..+... .-++...+.-.+.-...|++++|...|++....|...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 76643222222212 22222233446777777777665432 1122222222223345799999999999999888766
Q ss_pred HHHHHH---HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 301 WNAVVS---GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 301 ~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.+... -++.|+...+-|.+
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHH
Confidence 555543 467789999999999988762 233556778888899999999999999988763 34446888999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHH
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 455 (604)
+|-+.|+-..|.+..-.- ..-| +..+..-|...|....-.++++..|+++--+.|+-+.-...++.++.+.|++..|.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999875443 4334 55566656667777788899999999998888965433344566778999999999
Q ss_pred HHHHHHhhC
Q 044872 456 KIRSMMGDK 464 (604)
Q Consensus 456 ~~~~~m~~~ 464 (604)
.+++..-.+
T Consensus 681 d~yk~~hrk 689 (840)
T KOG2003|consen 681 DLYKDIHRK 689 (840)
T ss_pred HHHHHHHHh
Confidence 999988654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=125.41 Aligned_cols=287 Identities=15% Similarity=0.086 Sum_probs=179.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 044872 109 EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRV 188 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (604)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+...+..+.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588888887776654432111 2223333444467788888888888877643222222222346677888888888888
Q ss_pred HccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC
Q 044872 189 FDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS 265 (604)
Q Consensus 189 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (604)
++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 887755 24556777778888888888888888888876544221 111000
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
...+..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+ .+||.... ++.+
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~ 303 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIP 303 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHh
Confidence 00111222222233344555555555543 3555666677777777778888777777766 34444211 2233
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
....++.+++.+..+...+. .+-|.....++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|.
T Consensus 304 ~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33457777888777777753 2234555667778888888888888888877 66788887777888888888888888
Q ss_pred HHHHHHHcc
Q 044872 422 HVLNQLIAL 430 (604)
Q Consensus 422 ~~~~~~~~~ 430 (604)
.++++.+.+
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 888887654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-10 Score=109.61 Aligned_cols=348 Identities=11% Similarity=0.039 Sum_probs=233.4
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHHHHHH
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIP----DKNVVSWTAIIS 104 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~ 104 (604)
+..+|..+|.++++-...+.|.+++++......+.+..++|.+|.+-+-.-+ .++..+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 6678999999999988999999999988887778888999999866543333 34444443 489999999999
Q ss_pred HHHhCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH-HHHHHHHHHH----hCCC----CChhHHHH
Q 044872 105 GYINEGNLEE----AINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLST-AKWIHGYVNE----AGKG----RNVFVATS 171 (604)
Q Consensus 105 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~----~~~~~~~~ 171 (604)
+.++.|+++. |++++.+|++-|+.|...+|..++..+.+.++..+ +..+...+.. ..+. .|...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998764 56788889999999999999999999888887754 4444444433 2222 24556667
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCC--------C---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 172 LVDLYAKCGNMEKARRVFDQMPEK--------D---IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
-++.|.+..+.+-|.++-.-.... + ..-|..+....++....+.-+..|+.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 777788888888888876544321 1 12355667777888888889999999988778889999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHHHHHHHHhCCCHHHH
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV---WNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A 317 (604)
|....+.++...+++..++..|........--++..+++.. ..|+... +.....-++ ..-.+..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~ 508 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAY 508 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999988888775443333332222222221 0122111 111111111 0011111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH---HHHhhcCCHHHHHHHHHh
Q 044872 318 FGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV---DLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 318 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~ 394 (604)
...-.+|.+....| ...+.++-.+.+.|..++|.++|..+.++..-.|.....++|+ +.-.+......|...++-
T Consensus 509 e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22233455544443 3445555557788888888888887765545555555555444 444566777777777776
Q ss_pred C
Q 044872 395 M 395 (604)
Q Consensus 395 ~ 395 (604)
|
T Consensus 587 a 587 (625)
T KOG4422|consen 587 A 587 (625)
T ss_pred H
Confidence 6
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-12 Score=126.32 Aligned_cols=273 Identities=16% Similarity=0.122 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC------CCcchHHHHHHHHHhCCCchHHHHHH
Q 044872 147 LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE------KDIVSWSSMIQGYASNGFPKEALDMF 220 (604)
Q Consensus 147 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 220 (604)
..+|...|......- .-+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+--+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 445555665533332 22335556666677777777777777766644 244455555543221 1122222
Q ss_pred H-HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--
Q 044872 221 Y-NMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-- 297 (604)
Q Consensus 221 ~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 297 (604)
. .+... .|+ .+.+|.++.++|+-.++.+.|.+.|++..+-|
T Consensus 410 aq~Li~~--~~~----------------------------------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 410 AQDLIDT--DPN----------------------------------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHhh--CCC----------------------------------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 2 22221 111 23444555555555555555555555554422
Q ss_pred -cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHH
Q 044872 298 -QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGC 374 (604)
Q Consensus 298 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (604)
..+|+.+..-+.....+|.|...|+..+. +.|.. ..|-.+...|.+.++++.|+-.|+.+. .+.|. .....+
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~ 528 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCH 528 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhh
Confidence 23444444445555556666666665544 33433 244455556666666666666666665 44554 334445
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWN 452 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 452 (604)
+...+.+.|+.++|+++++++ -..| |+..---....+...+++++|...++++.++-|++...|..++.+|-+.|+.+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 556677777777777777776 2233 33332333445566778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCC
Q 044872 453 DAAKIRSMMGDKG 465 (604)
Q Consensus 453 ~A~~~~~~m~~~~ 465 (604)
.|..-|.-+.+..
T Consensus 609 ~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 609 LALLHFSWALDLD 621 (638)
T ss_pred HHHHhhHHHhcCC
Confidence 8888888776643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-11 Score=123.03 Aligned_cols=291 Identities=13% Similarity=0.076 Sum_probs=181.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSF-SIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKA 185 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 185 (604)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+..+.+....+...+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3468888888888776654 34332 33344455667788888888888776654333333444457777778888888
Q ss_pred HHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 044872 186 RRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNE 262 (604)
Q Consensus 186 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (604)
...++.+.+ | +...+..+...|.+.|++++|.+.+..+.+.++.++. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 877777754 2 4456667777778888888888888777776543221 1111000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH---
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTF--- 336 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 336 (604)
..+..+++.-......+...+.++..++ .++..+..+...+...|+.++|.+++++..+. .||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111112223344444555443 36667777777788888888888888888773 4444321
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHh
Q 044872 337 VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKS--M-PMEPNAIVWGALLAGCRL 413 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~ 413 (604)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122335677788888887775433333224556778888888999999998883 3 567888888888888888
Q ss_pred cCChHHHHHHHHHHHc
Q 044872 414 HKKTDLAEHVLNQLIA 429 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~ 429 (604)
.|+.++|.+++++.++
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999988888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-11 Score=121.04 Aligned_cols=275 Identities=9% Similarity=0.021 Sum_probs=196.1
Q ss_pred cCCHHHHHHHHccCCCC--CcchHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCchHHHHH
Q 044872 179 CGNMEKARRVFDQMPEK--DIVSWSSM-IQGYASNGFPKEALDMFYNMQRENLKPEYYTMV--GVLSACASLGALELGVW 253 (604)
Q Consensus 179 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 253 (604)
.|+++.|++.+....+. ++..+..+ .....+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765542 22222222 33446778888888888887663 44443322 22456677788888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc-----------cHHHHHHHHHhCCCHHHHHHHHH
Q 044872 254 ASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV-----------VWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
.++.+.+... .++.+...+...|.+.|++++|.+++..+.+.... .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888777663 35677778888888888888888888887753221 23333433344455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 044872 323 QLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA 401 (604)
Q Consensus 323 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 401 (604)
.+.+. .+.+......+..++...|+.++|...++...+. .|+.... ++.+....++.+++.+..++. ...|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66432 3446678888899999999999999999988753 4554322 223334569999999999888 555654
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 402 -IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 402 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..+..+...|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467788889999999999999999999999965 5688999999999999999999997754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-10 Score=116.98 Aligned_cols=218 Identities=9% Similarity=-0.043 Sum_probs=134.4
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHH----HHHHHHHhCCC
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWN----AVVSGLSMNGY 313 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~ 313 (604)
.....|+++.|...++.+.+... .++.+...+..+|...|++++|.+.+..+.+. +...+. ....++...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444331 13344444555555555555555555544432 111111 01111122233
Q ss_pred HHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHH-HHHHHHH--hhcCCHHH
Q 044872 314 VKVAFGVFGQLEKCGI---QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY-GCMVDLL--GRSGQLDE 387 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~--~~~g~~~~ 387 (604)
.+++.+.+..+..... +.+...+..+...+...|+.++|.+.++...+. .|+.... ..++..+ ...++.+.
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHH
Confidence 3334445555554321 126678888889999999999999999999864 3443310 0122222 34578888
Q ss_pred HHHHHHhC-CCCCCH---HHHHHHHHHHHhcCChHHHHHHHH--HHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 388 AHELIKSM-PMEPNA---IVWGALLAGCRLHKKTDLAEHVLN--QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 388 A~~~~~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+.+.+++. ...|+. ....++...|.+.|++++|.+.|+ ...+..|++ ..+..++.++.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888776 444433 566788889999999999999999 577788865 45779999999999999999999986
Q ss_pred hh
Q 044872 462 GD 463 (604)
Q Consensus 462 ~~ 463 (604)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=123.82 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=188.8
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHH-HHH
Q 044872 212 FPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEF--LSNPVLGTTLIDMYAKCGRMAQ-ACK 288 (604)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~ 288 (604)
+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457788888774443 333345566677788888888888888888766431 2256677766544333222211 222
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 044872 289 VFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP 367 (604)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 367 (604)
+.+ +....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... + .
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~ 484 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--V 484 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--C
Confidence 222 2234678999999999999999999999999998 778 56788888888888999999999999776 3 4
Q ss_pred chHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 368 MIEHYGCM---VDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 368 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
+..+|+++ .-.|.+.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|+.++++++-++|.|+..-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 55566654 56789999999999999998 78884 456666777789999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 044872 443 NIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++...+++++|...++++++-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-13 Score=128.77 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=68.7
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHH-HHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFP-FVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
+.+.|++++|++++.+.......|+...|. .+...+...++.+.|.+.++.++..+.. ++..+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccc
Confidence 445566666666664433322122222222 2333344455666666666666554422 34445555544 45566666
Q ss_pred HHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD--KNVVSWTAIISGYINEGNLEEAINMFRRLLHRG-LKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+++...|......+.+.|+.++|...++.+++.
T Consensus 96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6655554322 344455555566666666666666666654322 2234444555555555666666666666666655
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP---EKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVG 237 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 237 (604)
. +.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++..... +.|..+...
T Consensus 176 ~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~ 253 (280)
T PF13429_consen 176 D-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLA 253 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccc
Confidence 3 2245555556666666666665544444432 2344555556666666666666666666555431 123333444
Q ss_pred HHHHHHccCchHHHHHHHH
Q 044872 238 VLSACASLGALELGVWASS 256 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~ 256 (604)
+..++...|+.+.|.++..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHT-------------
T ss_pred ccccccccccccccccccc
Confidence 4444444444444444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-09 Score=99.90 Aligned_cols=281 Identities=14% Similarity=0.117 Sum_probs=148.4
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCC------cchHHHHHHHHHhCCC
Q 044872 139 TACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKD------IVSWSSMIQGYASNGF 212 (604)
Q Consensus 139 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~ 212 (604)
.++-.....+++.+=.......|++.+...-+....++-...+++.|+.+|+++.+.| ..+|..++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 3444444555666666666666666555555555555556666666666666665432 23444333 222221
Q ss_pred chHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 213 PKEALDMFYNMQR--ENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVF 290 (604)
Q Consensus 213 ~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (604)
. .+.++.+-.. ...+| .|...+.+-|+-.++.++|...|++.++.+.. ...+|+.+..-|....+...|..-+
T Consensus 313 s--kLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred H--HHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1 1111111111 12222 34445555555556666666666666655422 3455555666666666666666666
Q ss_pred HhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 044872 291 REMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 291 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
+...+ .|-..|-.+.++|...+...=|+-.|++... .+| |...+.+|..+|.+.++.++|+..|.....- -+
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~d 463 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GD 463 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cc
Confidence 65543 3455666666666666666666666666665 445 3456666666666666666666666655532 12
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-------P-MEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
.+...+..|.++|.+.++.++|...|++. + +.|... .---|..-+.+.+++++|.........-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 23455566666666666666666655543 1 122122 1111333345566666666555554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-09 Score=101.68 Aligned_cols=252 Identities=13% Similarity=0.101 Sum_probs=188.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFL--SNPVLGTTLIDMYAKCG 281 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 281 (604)
..+|-...+.+++++-.......|+.-....-+....+.-...++++|..+|+.+.+...- .|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3445555566777777777776666544444444444555667888888888888876421 2455666554 33332
Q ss_pred --CHH-HHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 044872 282 --RMA-QACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 282 --~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
++. -|..+++ +.+--+.|.-.+..-|.-.++.++|...|++..+ +.|.. ..++.+..-|....+-..|.+-++
T Consensus 312 ~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222 2222222 2222345555566677788899999999999988 56765 466667778999999999999999
Q ss_pred HchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 358 SMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 358 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.++ .+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++..+..+
T Consensus 389 rAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 988 4445 6778899999999999999999999988 6666 67799999999999999999999999999888777
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 435 SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 435 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..++..|+++|-+.++.++|...+.+-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88999999999999999999999988776
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-10 Score=116.64 Aligned_cols=439 Identities=13% Similarity=0.112 Sum_probs=248.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 044872 16 EFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKN 95 (604)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 95 (604)
.++-.+...|+.|+.+||.++|..|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999888 9999988878888889999999988888887766 678
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCChhhHHHHHHHHhcCCChHHH---------HHHHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRR-LLH-------RGLKPDSFSIVRVLTACTQLGDLSTA---------KWIHGYVN 158 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a---------~~~~~~~~ 158 (604)
..+|+.|..+|.+.|+... ++..++ |.. .|+..-..-+...++.| . +....+ +.++...+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p-~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC-P-HSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC-c-ccchhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999765 333333 221 22211111111111111 1 111111 11222222
Q ss_pred HhCCCCChhHHHH----HHHHHH-hcCCHHHHHHHHccCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 044872 159 EAGKGRNVFVATS----LVDLYA-KCGNMEKARRVFDQMPE-KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEY 232 (604)
Q Consensus 159 ~~g~~~~~~~~~~----li~~y~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 232 (604)
+.+....+..++. ++.-.. ....+++-........+ ++..++.+++.+-..+|+.+.|..++.+|.+.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2221000000000 011111 11123333333333333 66677777777777777777777777777777776666
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH------------------------HHH
Q 044872 233 YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQ------------------------ACK 288 (604)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------A~~ 288 (604)
.-|-.++-+ .++......+..-|...|+.|+..++.-.+-...+.|.... |.+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 666555544 56666666666667777777776666544443333222111 111
Q ss_pred HHH---------hcCC-------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCH-HHHHHHHHHH------
Q 044872 289 VFR---------EMKD-------KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC--GIQPNG-NTFVGLLCGC------ 343 (604)
Q Consensus 289 ~~~---------~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-~t~~~ll~a~------ 343 (604)
.++ ..++ ....+|...+. ...+|+.++..++-..|..- ...|+. ..|..++.-|
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111 1111 11233433222 12244444444433333211 011111 1111111111
Q ss_pred --------------------------------------------------------------------------hccCcH
Q 044872 344 --------------------------------------------------------------------------THAGLV 349 (604)
Q Consensus 344 --------------------------------------------------------------------------~~~g~~ 349 (604)
.+.-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111111
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP-----MEPNAIVWGALLAGCRLHKKTDLAEHVL 424 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 424 (604)
.++...-+... .. .-...|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+.+....+..++
T Consensus 476 lK~l~~~ekye-~~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYE-DL---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHH-HH---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 11111111000 00 001457888888888999999999998883 2235556778888889999999999999
Q ss_pred HHHHcc---CCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 425 NQLIAL---EPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 425 ~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
+++.+. .|.......-+.+..+..|+.+...++++-+...|+.. .|.-|
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 888752 34444566678888899999999999999999888865 35545
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-09 Score=103.49 Aligned_cols=257 Identities=12% Similarity=0.028 Sum_probs=200.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 200 WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
...-..-+...+++.+.++++....+.. ++....+..=|.++...|+...-..+-..+++.- +..+.+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 3344556777899999999999988742 3444444444556777777766666656666543 3456778888888888
Q ss_pred cCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 044872 280 CGRMAQACKVFREMKDKD---QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
.|+..+|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+ .-| ....+.-+.--|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 899999999999876544 36899999999999999999999988766 222 223344455568889999999999
Q ss_pred HHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 044872 356 FNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM--P------MEP-NAIVWGALLAGCRLHKKTDLAEHVLN 425 (604)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 425 (604)
|.... ++-| |+.+.+-+.-+....+.+.+|..+|+.. + .++ -..+|+.|..+|++.+.+++|+..++
T Consensus 403 f~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 403 FKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99887 5566 4556666666666788899999998765 1 112 34578888999999999999999999
Q ss_pred HHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 426 QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 426 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.+.+.|.++.+|..++-+|...|+++.|...|.+...
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998865
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-08 Score=99.95 Aligned_cols=445 Identities=11% Similarity=0.113 Sum_probs=239.4
Q ss_pred hcCCchHHHHHHHHHHhC-CCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNE-GFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADAL 85 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 85 (604)
.+|+.......|++.+.. .+......|...++-....+-++.+..++..-++. ++..-+--|..+++.+++++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 444555555555554432 12223334555555555555555666666655442 2223455556666667777776
Q ss_pred HHhccCCCC----------CcccHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCCh--hhHHHHHHHHhcCCChHHH
Q 044872 86 KVFDDIPDK----------NVVSWTAIISGYINEGNLEE---AINMFRRLLHRGLKPDS--FSIVRVLTACTQLGDLSTA 150 (604)
Q Consensus 86 ~~f~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a 150 (604)
+.+..+... +-..|+.+-...+++-+.-. .-.+++.+... -+|. ..|.+|.+-|.+.|.++.|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 666655432 23346655555555433222 22233333321 2333 3466777777777777777
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------------------HHHHHHHHccCCCC-------------
Q 044872 151 KWIHGYVNEAGKGRNVFVATSLVDLYAKCGN----------------------MEKARRVFDQMPEK------------- 195 (604)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------------------~~~A~~~~~~~~~~------------- 195 (604)
..++++.++.- .++.-++.+-+.|+.... ++-...-|+.+.++
T Consensus 268 rDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 77777766642 233334444444443211 11112222222110
Q ss_pred --CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc-
Q 044872 196 --DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE------YYTMVGVLSACASLGALELGVWASSFMERNEFLSN- 266 (604)
Q Consensus 196 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 266 (604)
++..|..-+. ...|+..+-...|.+..+. +.|- ...+..+...|-+.|+++.|+.+|+...+.....-
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 1122222221 2245566666666666553 3332 23456667777788888888888888777554432
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------------------CcccHHHHHHHHHhCCCHHHHHHHHHH
Q 044872 267 --PVLGTTLIDMYAKCGRMAQACKVFREMKD-K--------------------DQVVWNAVVSGLSMNGYVKVAFGVFGQ 323 (604)
Q Consensus 267 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 323 (604)
..+|..-.++-.+..+++.|.++.+.... | +...|...+..--..|-++....+|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45566666667777777777777766532 1 222344444433344444444444444
Q ss_pred HHHCC----------------------------------CCCCHH-HHHHHHHHH---hccCcHHHHHHHHHHchhhcCC
Q 044872 324 LEKCG----------------------------------IQPNGN-TFVGLLCGC---THAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 324 m~~~g----------------------------------~~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
+.... -.|+.. .|+..|.-+ .....++.|..+|++..+ +.
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~C 580 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GC 580 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cC
Confidence 43322 124432 233333222 223467888888888875 66
Q ss_pred CCchH--HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch--h
Q 044872 366 TPMIE--HYGCMVDLLGRSGQLDEAHELIKSM--PMEPNA--IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG--N 437 (604)
Q Consensus 366 ~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~ 437 (604)
+|... .|-.....=.+-|....|++++++. ..++.. ..||..|.--...=-+.....+|+++++.-|++-. .
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~m 660 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREM 660 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHH
Confidence 66432 2222222233457778888888887 333332 36777776544433455567788888887776432 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..-.+++-.+.|..+.|+.++..-.+-
T Consensus 661 clrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 661 CLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 334678888999999999999877653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-09 Score=101.98 Aligned_cols=292 Identities=15% Similarity=0.116 Sum_probs=198.5
Q ss_pred HHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 102 IISGYIN--EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179 (604)
Q Consensus 102 li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (604)
+..+..+ .|+|..|.++..+-.+.+-.| ...|.....+.-..||.+.+-+++.++.+..-+++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444433 589999999998877765443 3446666677788999999999999998875577788888888889999
Q ss_pred CCHHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 044872 180 GNMEKARRVFDQMP---EKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASS 256 (604)
Q Consensus 180 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 256 (604)
|+++.|..-.+++. .+++........+|.+.|++.+...++..|.+.|+--|...- ++
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l-- 227 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL-- 227 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH--
Confidence 99999988777654 367778888999999999999999999999988765443211 00
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 044872 257 FMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 257 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+-
T Consensus 228 ---------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 228 ---------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred ---------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 122333343333333333333445555542 34555556666677777788888877777776666662
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCR 412 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~ 412 (604)
. .+-.+.+.++.+.-++..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.
T Consensus 299 ~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 299 C----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred H----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 2 22345566666666666665555444444 45666777777777777777777765 66677777777777777
Q ss_pred hcCChHHHHHHHHHHH
Q 044872 413 LHKKTDLAEHVLNQLI 428 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~ 428 (604)
+.|+.+.|.+..++.+
T Consensus 373 ~~g~~~~A~~~r~e~L 388 (400)
T COG3071 373 QLGEPEEAEQVRREAL 388 (400)
T ss_pred HcCChHHHHHHHHHHH
Confidence 7777777777777665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=100.06 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=120.0
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-C--hhHHHHHHHHHHhcCChHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDC-D--EFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~ 83 (604)
-+.++++|+++|-+|.+.++. +..+-.+|-+.+.+.|..+.|..+|+.+.++.--+ + ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 345667777777777664322 33344455566666777777777777766542111 0 1223345555666777777
Q ss_pred HHHHhccCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHH
Q 044872 84 ALKVFDDIPDKN---VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGY 156 (604)
Q Consensus 84 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~ 156 (604)
|+.+|..+.+.+ ..+..-|+..|-+..+|++|+++-+++.+.+-.+..+ .|.-+...+....+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 777776665522 2344456677777777777777777666654443322 122333333444555566666665
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcc----hHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 044872 157 VNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIV----SWSSMIQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++....+.++.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 55543 223334444555555666666666666555554432 3444555566666666666555555553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-10 Score=106.92 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=162.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788889999999999999988754 245677888889999999999999999998843 2345677778888
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 420 (604)
+...|++++|.+.++...+..........+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998854222233556777888899999999999999887 4444 456788888899999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888999999999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-09 Score=98.73 Aligned_cols=267 Identities=12% Similarity=0.124 Sum_probs=160.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHH
Q 044872 109 EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR---NVFVATSLVDLYAKCGNMEKA 185 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 185 (604)
+.++++|+++|-+|.+.. +-+..+-.++.+.+.+.|..+.|.++|.-+.++.--+ -....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888899888888742 1233455667778888888888888888887642111 123344567778888888888
Q ss_pred HHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 044872 186 RRVFDQMPEKDI---VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNE 262 (604)
Q Consensus 186 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (604)
+.+|..+.+... .+..-|+..|-+..+|++|++.-+++...+-.+..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 888888776333 34556778888888888888888877775544332211
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ---VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
...|.-|...+.-..+.+.|..++.+..+.|. ..--.+...+...|++..|.+.++...+.+..--..+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 12233344444445566666666666554322 22223445566777777777777777775432233456666
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL-IKSMPMEPNAIVWGALLAG 410 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~ 410 (604)
..+|.+.|+.+++...+..+.+. .+....-..+.+.-....-.+.|... .+.+.-+|+...+..|+..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 77777777777777777766643 23333333333333333333344333 3344556666666555554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-11 Score=120.11 Aligned_cols=272 Identities=13% Similarity=0.145 Sum_probs=199.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044872 218 DMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD 297 (604)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 297 (604)
.++..|...|+.|+.+||.+++.-|+..|+.+.|- ++..|.-.....+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999999 9999998888889999999999999999888776 678
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
..+|+.|..+|.++|+... ++..++ ....+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999865 333333 222344455666666666666655432334556553 4455
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 378 LLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHK-KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.+.-.|-++.+++++..+|...-......+++-+.... .+++-..+.+...+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 66778889999999999864321112222344444333 34444444444444 45 67899999999999999999999
Q ss_pred HHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhh
Q 044872 457 IRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEK 529 (604)
Q Consensus 457 ~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~ 529 (604)
+...|+++|+.-.+.+.|-.+-| ... ..-++.+.+-|++.|+.|+..|....+.++-+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~~-------~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------INA-------AQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Ccc-------chHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 99999999998888888854433 111 12245678889999999999998766655544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=84.20 Aligned_cols=50 Identities=34% Similarity=0.755 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ 143 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (604)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-08 Score=91.18 Aligned_cols=365 Identities=12% Similarity=0.043 Sum_probs=234.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCC-CcccHHHHHHHHHhCCC--hh-------------HHHHHHHHHHHCC----
Q 044872 67 VKTSLLNLYVHCGYLADALKVFDDIPDK-NVVSWTAIISGYINEGN--LE-------------EAINMFRRLLHRG---- 126 (604)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~--~~-------------~A~~~~~~m~~~g---- 126 (604)
.--..+..|...++-+.|.....+.+.. ...--|.|+.-+-+.|. .+ -|++.+.-..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcch
Confidence 3445667777778888888888887753 22333334333333221 11 1222222222222
Q ss_pred -----------CCCChhhHHHHHHHHhc--CCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHccC
Q 044872 127 -----------LKPDSFSIVRVLTACTQ--LGDLSTAKWIHGYVNEA-GKGRNVFVATSLVDLYAKCGNMEKARRVFDQM 192 (604)
Q Consensus 127 -----------~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 192 (604)
+.|+..+....+.+++. .++-..+.+.+-.+... -++.|+....++.+.|...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 23333444444554433 33444444444444333 35678888999999999999999999999987
Q ss_pred CCCCcchHHHH---HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhH
Q 044872 193 PEKDIVSWSSM---IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVL 269 (604)
Q Consensus 193 ~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 269 (604)
..-|+.+...| .-.+.+.|++++.-.+...+.... +-....+..-+...-..++++.|..+-+..++.... +...
T Consensus 259 ~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~a 336 (564)
T KOG1174|consen 259 LCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEA 336 (564)
T ss_pred hhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchH
Confidence 65444433332 334567788888777776665431 112222222223334456777777777766665422 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLL-CGCT- 344 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~- 344 (604)
+-.-...+...|+.++|.-.|+.... .+..+|..|+..|...|++.+|..+-+...+. ++-+..+...+. ..|.
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence 33334566678999999999987653 37789999999999999999998887776552 333445554442 2232
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
....-++|..+++... .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++..+.+++|..
T Consensus 416 dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred CchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHH
Confidence 3344578888888766 55676 455667778888999999999999887 667899999999999999999999999
Q ss_pred HHHHHHccCCCCchh
Q 044872 423 VLNQLIALEPWNSGN 437 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~ 437 (604)
.|..++.++|++..+
T Consensus 493 ~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 493 YYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHhcCccchHH
Confidence 999999999987433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=83.53 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-08 Score=95.00 Aligned_cols=434 Identities=12% Similarity=0.100 Sum_probs=261.4
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--hc
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTS--LLNLYV--HC 78 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~~ 78 (604)
+-+.++|++++|+..-.+++..+ +-+...+..-+-+..+.+.++.|..+.+ ..+. ..+++. +=.+|+ +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34567899999999999999876 3355666666677888888988885433 2221 122222 234554 67
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHhcCCChHHHHHHHHH
Q 044872 79 GYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSF--SIVRVLTACTQLGDLSTAKWIHGY 156 (604)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~ 156 (604)
+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.. |.. .-..++.+-.. ... ..
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a~-------l~~-~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAAA-------LQV-QL 163 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHh-------hhH-HH
Confidence 99999999999665555556666677888999999999999999876542 221 11122211110 011 01
Q ss_pred HHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHccC--------CCCCcc----------hHHHHHHHHHhCCCchHH
Q 044872 157 VNEAGKGR--NVFVATSLVDLYAKCGNMEKARRVFDQM--------PEKDIV----------SWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 157 ~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~~g~~~~A 216 (604)
+......| +-..+-.....+...|++.+|+++++.. .+.|.. .---|.-.+...|+-.+|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11222222 1222223455678889999999999876 221111 112244567788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH---HHHHHccCchHH--HHHHHHH-----------HHHcCCCCchhHHHHHHHHHHhc
Q 044872 217 LDMFYNMQRENLKPEYYTMVGV---LSACASLGALEL--GVWASSF-----------MERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
..++....+.. .+|....... |.+.....++.. ....++. .+...-......-++++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999998864 3454322221 222222222211 1111111 111111112233355566554
Q ss_pred CCHHHHHHHHHhcCCCC-cccHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 044872 281 GRMAQACKVFREMKDKD-QVVWNAVVSGLS--MNGYVKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 281 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
+..+.+.++-...+... ...+..++.... +.....+|.+++...-+. .|.. ......+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45567777777666532 334444444322 223467777777776653 3444 3444555667789999999999
Q ss_pred HH--------HchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCChH
Q 044872 356 FN--------SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--------PMEPNA-IVWGALLAGCRLHKKTD 418 (604)
Q Consensus 356 ~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~~~~~ 418 (604)
+. .+.+. +..| .+..+++.+|.+.+.-+.|.+++.+. .-++.. .+|.-+..--.++|+-+
T Consensus 399 l~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 44422 3333 45567788888888877676666554 222222 23444444456789999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 419 LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+|...++++.+.+|++......++.+|++. +.+.|..+-+.+
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999999999877 456666654433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-08 Score=98.24 Aligned_cols=397 Identities=17% Similarity=0.109 Sum_probs=257.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHH
Q 044872 60 GLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD-SFSIV 135 (604)
Q Consensus 60 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 135 (604)
.+..|..+|..|.-....+|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+++.-......|+ ...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998653 3456799999999999999999999988765433343 34444
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhcC-----------CHHHHHHHHccCCCC---C
Q 044872 136 RVLTACT-QLGDLSTAKWIHGYVNEA--GK--GRNVFVATSLVDLYAKCG-----------NMEKARRVFDQMPEK---D 196 (604)
Q Consensus 136 ~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~~~~~~~~---~ 196 (604)
..-+.|. +.+..+++..+-.+++.. +. ......+-.+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445554 456777777777766662 11 122344444544554321 234566666666432 3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc-CCCCchhHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERN-EFLSNPVLGTTLID 275 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 275 (604)
+.+---+.--|+-.++.+.|++..++....+-.-+...+..+.-.++..+++..|..+.+..... |. |-.....-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 32222333446777889999999999888765667777777777788888899998888776542 21 1000001111
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------------------------------CCc-ccHHHHHHHHHhCCCHHHHHHHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKD-------------------------------KDQ-VVWNAVVSGLSMNGYVKVAFGVFGQ 323 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 323 (604)
.-...++.++|......+.. .|. .++..+.. ... -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-
Confidence 11223444444433222210 011 11111111 111 01110000000
Q ss_pred HHHCCCC--CCH------HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044872 324 LEKCGIQ--PNG------NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 324 m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (604)
|...-+. |+. ..+......+...+..+++...+.+.. ++.| ....|.-....+...|.+++|.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1111122 221 123344566788888999988887776 3344 355666667888899999999999887
Q ss_pred C-CCCCCHH-HHHHHHHHHHhcCChHHHHH--HHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 395 M-PMEPNAI-VWGALLAGCRLHKKTDLAEH--VLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 395 ~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
. .+.|+.+ +..++...+.+.|+...|.. ++..+++++|.++.+|..++.++-+.|+.++|.+.|....+.
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7 7778655 88899999999999888888 999999999999999999999999999999999999988764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.1e-09 Score=97.08 Aligned_cols=275 Identities=11% Similarity=0.096 Sum_probs=189.6
Q ss_pred cCCHHHHHHHHccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 044872 179 CGNMEKARRVFDQMPEK---DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWAS 255 (604)
Q Consensus 179 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 255 (604)
.|++..|++...+-.+. .+..|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 47777777776664432 223344444555666777777777777665422344444555555666777777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------cccHHHHHHHHHhCCCHHHHHHHHHHH
Q 044872 256 SFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-----------QVVWNAVVSGLSMNGYVKVAFGVFGQL 324 (604)
Q Consensus 256 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 324 (604)
..+.+.+.. ++.+.....++|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 776665533 56666777788888888888888888776642 236777776665555555555566665
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC
Q 044872 325 EKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN 400 (604)
Q Consensus 325 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~ 400 (604)
... .+-+...-.+++.-+...|+.++|.++.....++ +.+|+... + -...+-++.+.-.+..++. |..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 432 3445556667777888999999999999988865 66666221 1 2233455555444444433 4434
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..+.+|...|.+++.+.+|...|+..++..| +...|..++..+.+.|+..+|..++++...
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6888999999999999999999999999999 457999999999999999999999998764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-09 Score=106.10 Aligned_cols=232 Identities=16% Similarity=0.151 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHc-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERN-----EF-LSNP-VLGTTLIDMYAKCGRMAQACKVFREMKD-------K- 296 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 296 (604)
..|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566777888888888888888777653 21 1122 2234466778888888888888887653 1
Q ss_pred ---CcccHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcC--
Q 044872 297 ---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEK-----CGIQ-PNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS-- 364 (604)
Q Consensus 297 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 364 (604)
-..+++.|...|...|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 124667777788889998888877776643 1222 222 3456677788999999999999887655332
Q ss_pred CCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc-
Q 044872 365 LTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA- 429 (604)
Q Consensus 365 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 429 (604)
+.++ ..+++.|...|-..|++++|.++++++ +..+. ...++.|...|.+.++.+.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 357899999999999999999999887 11222 34677788899999999999999988753
Q ss_pred ---cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 430 ---LEPWN---SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 430 ---~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+|+. ..+|..|+..|.+.|++++|.++......
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44544 46788999999999999999999988863
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-06 Score=84.89 Aligned_cols=439 Identities=11% Similarity=0.113 Sum_probs=252.1
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcC
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG------LDCDEFVKTSLLNLYVHCG 79 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g 79 (604)
.+.+-++-++.++++-++.. | ..-.--+..+...+++++|.+.+..++... .+.+...|.-+.+..++.-
T Consensus 149 ~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p 224 (835)
T KOG2047|consen 149 ESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP 224 (835)
T ss_pred HhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc
Confidence 35566778888888887743 3 235566777788899999999998875432 2344556666666655442
Q ss_pred Ch---HHHHHHhccCCCC--C--cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc---------
Q 044872 80 YL---ADALKVFDDIPDK--N--VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ--------- 143 (604)
Q Consensus 80 ~~---~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--------- 143 (604)
+. -....++..+..+ | ...|++|..-|.+.|.++.|.++|++.+..-+ ...-|..+..+|+.
T Consensus 225 ~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~ 302 (835)
T KOG2047|consen 225 DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAK 302 (835)
T ss_pred chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHH
Confidence 21 1233344444332 2 34688888888888888888888777655311 22222333322221
Q ss_pred ---------------------------------------------------------CCChHHHHHHHHHHHHhCCCC--
Q 044872 144 ---------------------------------------------------------LGDLSTAKWIHGYVNEAGKGR-- 164 (604)
Q Consensus 144 ---------------------------------------------------------~g~~~~a~~~~~~~~~~g~~~-- 164 (604)
.|+..+-...+.++++. +.|
T Consensus 303 me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 303 MELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred HhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCccc
Confidence 12222222233333322 111
Q ss_pred ----ChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCc-------chHHHHHHHHHhCCCchHHHHHHHHHHHCC------
Q 044872 165 ----NVFVATSLVDLYAKCGNMEKARRVFDQMPEKDI-------VSWSSMIQGYASNGFPKEALDMFYNMQREN------ 227 (604)
Q Consensus 165 ----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 227 (604)
-...|..+.+.|-..|+++.|+.+|++..+-+- .+|..-...=.++.+++.|+++.++....-
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 123577788888999999999999998766221 345555566667788888888877654311
Q ss_pred ----CCC-CHH------HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 044872 228 ----LKP-EYY------TMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD- 295 (604)
Q Consensus 228 ----~~p-~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 295 (604)
-.| ... .++..+..--..|-++..+.+++.+++..+.....+.| ..-.+-...-++++.+++++-..
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCcc
Confidence 111 111 22223333445677888888888888877653333333 22234455667888888887653
Q ss_pred ---CCc-ccHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHchhhcCCC
Q 044872 296 ---KDQ-VVWNAVVSGLSM---NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG--CTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 296 ---~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
|++ ..|+..+.-+.+ .-..+.|..+|++.++ |.+|...-+.-|+-+ -..-|....|..+++.+.. +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~ 617 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVK 617 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCC
Confidence 343 468877665543 3468899999999999 778876433333322 2345888899999998764 455
Q ss_pred Cc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHccC-CC-CchhH
Q 044872 367 PM--IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIV---WGALLAGCRLHKKTDLAEHVLNQLIALE-PW-NSGNY 438 (604)
Q Consensus 367 p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~ 438 (604)
+. ...|+..|.--+..=-+..-.++|++. ..-||..+ .-.+...-.+.|..+.|..++...-++- |. ++..|
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence 43 345666553221111111122333332 12233332 2223333456777777877777766643 33 33455
Q ss_pred HHHHHHHHhcCChHHHH
Q 044872 439 VLLSNIYSASHKWNDAA 455 (604)
Q Consensus 439 ~~l~~~~~~~g~~~~A~ 455 (604)
...-+.-.+.|+-+-..
T Consensus 698 ~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 698 DTWKEFEVRHGNEDTYK 714 (835)
T ss_pred HHHHHHHHhcCCHHHHH
Confidence 55555556667644333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-09 Score=111.18 Aligned_cols=260 Identities=13% Similarity=0.030 Sum_probs=185.4
Q ss_pred CcchHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------ccCchHHHHHHHHHHHH
Q 044872 196 DIVSWSSMIQGYAS-----NGFPKEALDMFYNMQRENLKPEY-YTMVGVLSACA---------SLGALELGVWASSFMER 260 (604)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 260 (604)
+...|...+.+-.. .+..++|+++|++..+. .|+. ..+..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44556566655322 13467899999998874 5653 34444443332 23457899999999988
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 044872 261 NEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TF 336 (604)
Q Consensus 261 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 336 (604)
.... +...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+ ..|+.. .+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhH
Confidence 7633 677788888899999999999999999765 3 355788888899999999999999999998 556542 33
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHh
Q 044872 337 VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRL 413 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~ 413 (604)
..++..+...|++++|...++.+.+. ..|+ ...+..+...|...|++++|.+.++++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34444566689999999999988753 2343 455677788899999999999999988 5556544 45555556677
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.| +.|...++.+++..-..+.....+..+|+-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788888887753322222333377778888888888777 7777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-07 Score=85.30 Aligned_cols=410 Identities=15% Similarity=0.152 Sum_probs=217.0
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHH
Q 044872 40 CAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAI 116 (604)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 116 (604)
+....++..|..+++.-...+-+-...+-.-+...|.+.|++++|...+..+.+ ++...|-.|.-.+.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 344555666666655544333221112222233445556666666666654432 34445555555555556666665
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--
Q 044872 117 NMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE-- 194 (604)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 194 (604)
.+-.... .++---..++...-+.++-++-..+++.+... ..-.-+|..+....-.+++|.+++.++..
T Consensus 112 ~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5443321 12222233334444556655555555554432 12233444444444556666666666544
Q ss_pred CCcchHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c--C-----------------------
Q 044872 195 KDIVSWSS-MIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS--L--G----------------------- 246 (604)
Q Consensus 195 ~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~--~----------------------- 246 (604)
|+....|. |.-+|.+..-++-+.+++.--.+. -||. |+..-+.+|.. . |
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 33333333 233555555566555555554443 2332 22222222211 1 1
Q ss_pred ----------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCC---
Q 044872 247 ----------ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGY--- 313 (604)
Q Consensus 247 ----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~--- 313 (604)
+-+.|.+++--+.+. .| ..--.|+--|.+.+++++|..+.+.+....+.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 112222222222211 11 1222355568899999999999888765444333222222333333
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 314 ----VKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 314 ----~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
..-|.+.|+-.-.++..-|.+ --.++.+++.-...+++.+.++..+.. +=...|...+ .+.++++..|.+.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHH
Confidence 344555555444444433332 123444555556678888888888874 3334444444 467888999999999
Q ss_pred HHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChHHHHHHHHHHHccC-CCCc-hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 389 HELIKSMP-ME-PNAIVWGALLAG-CRLHKKTDLAEHVLNQLIALE-PWNS-GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 389 ~~~~~~~~-~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.++|-.+. .+ .|..+|.+++.- |.+.+..+.|..++ +..+ |.+. .....+++-|.+++.+=-|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 99998872 12 467788777765 56777887776554 4433 3332 3345678889999999999999998876
Q ss_pred CCCccCCceeE
Q 044872 464 KGIQKIRGCSW 474 (604)
Q Consensus 464 ~~~~~~~~~s~ 474 (604)
.+ |.|. .|
T Consensus 490 lD--P~pE-nW 497 (557)
T KOG3785|consen 490 LD--PTPE-NW 497 (557)
T ss_pred cC--CCcc-cc
Confidence 43 4443 37
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-08 Score=98.09 Aligned_cols=234 Identities=13% Similarity=0.120 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCCC----------CCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCC-
Q 044872 167 FVATSLVDLYAKCGNMEKARRVFDQMPE----------KDIV-SWSSMIQGYASNGFPKEALDMFYNMQRE---NLKPE- 231 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~- 231 (604)
.+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++..- ..-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445566777777777777776665432 1222 2334667788888888888888887642 11112
Q ss_pred ---HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCc-ccHHHH
Q 044872 232 ---YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK---DKDQ-VVWNAV 304 (604)
Q Consensus 232 ---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l 304 (604)
..|+..|..+|.+.|++++|...++.+.+. ++... .+.+ ...+.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 123333444444555555544444433221 00000 0111 123444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCCc-hHH
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKC---GIQPNG----NTFVGLLCGCTHAGLVDEGRQFFNSMSRVF-----SLTPM-IEH 371 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 371 (604)
+..+...+++++|..+++...+. -..++. .++..+...|...|++++|.++|+.+.... +..+. -..
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 55566666677776666654331 122222 477788888888888888888888766432 11222 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM--------PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
++-|...|.+.++.++|.++|.+. +..|+.. +|..|...|...|+++.|+++.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 677778888888888888888765 3456655 89999999999999999999999886
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-09 Score=100.13 Aligned_cols=211 Identities=13% Similarity=0.093 Sum_probs=151.1
Q ss_pred chHHHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHH
Q 044872 247 ALELGVWASSFMERNE-FLSN--PVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGV 320 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 320 (604)
..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666666432 2222 45677778889999999999999998764 3567899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 044872 321 FGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PM 397 (604)
Q Consensus 321 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 397 (604)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 6675 467778888889999999999999988853 454332222223345678899999999665 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------ccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 398 EPNAIVWGALLAGCRLHKKTDLAEHVLNQLI-------ALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
.|+...| .......|+...+ ..++.+. ++.|..+.+|..++.++.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 1222335555443 2444443 34566678999999999999999999999999987553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9e-08 Score=92.48 Aligned_cols=186 Identities=15% Similarity=0.064 Sum_probs=142.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH
Q 044872 275 DMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 350 (604)
..+.-+|+.-.|..-|+..... ++..|--+...|.+..+.++-.+.|++... +.| |+.+|..-.....-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHH
Confidence 3455688999999999887753 233377777889999999999999999988 555 4466766666667778999
Q ss_pred HHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 351 EGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+|..=|+..+ .+.|+ +..|-.+.-+.-|.+++++++..|++. .++.-+..|+-....+..+++++.|.+.|+.+
T Consensus 412 ~A~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999887 55664 556767777777999999999999988 33334558888888999999999999999999
Q ss_pred HccCCC------CchhHHHHHHH--HHhcCChHHHHHHHHHHhhCCC
Q 044872 428 IALEPW------NSGNYVLLSNI--YSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 428 ~~~~p~------~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
++++|. ++..++.-+-+ -.+ +++..|.+++.+..+.+.
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDP 534 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCc
Confidence 999998 55555542222 233 888899999998877443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-07 Score=91.45 Aligned_cols=210 Identities=16% Similarity=0.084 Sum_probs=109.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CchhHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASSFMERNEFL-SNPVLGTTLID 275 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 275 (604)
++|-++.--|...|...+|.+.|.+... +.|. ...|.....+++..+.-++|...+..+-+.=.. .-+..|.. -
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg--m 388 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG--M 388 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH--H
Confidence 4444444444444445555444444322 1121 123344444444444444444444443331100 01222221 1
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHhcc
Q 044872 276 MYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC--GI---QP-NGNTFVGLLCGCTHA 346 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p-~~~t~~~ll~a~~~~ 346 (604)
-|.+.++++.|.++|.+... .|+...+-+....-..+.+.+|..+|+..... .+ .+ -..+++.|..+|.+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 34555566666666655432 24555555555444555666666666655421 01 11 223566667777777
Q ss_pred CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRL 413 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 413 (604)
+.+++|+..|+.... -.+.+..++.++.-.|...|+++.|.+.|.+. .++||..+-..++..+..
T Consensus 469 ~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 777777777776663 23445666777777777777777777777766 667777666666665443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-09 Score=109.41 Aligned_cols=242 Identities=10% Similarity=-0.063 Sum_probs=155.5
Q ss_pred CChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH---------hcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCC
Q 044872 44 HDFQLGVRSHSLIVKAGLDCD-EFVKTSLLNLYV---------HCGYLADALKVFDDIPD---KNVVSWTAIISGYINEG 110 (604)
Q Consensus 44 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~---------~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 110 (604)
++++.|.+++++.++.. |+ ...+..+...|. ..+++++|...+++..+ .+..+|..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 45778888888887753 33 344554444433 22447788888877654 35667777777888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
++++|+..|++..+.+. .+...+..+..++...|++++|...++.+++.... +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888888887532 23456777777888888888888888888887533 22333344555666788888888887
Q ss_pred cCCC---C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCchHHHHHHHHHHHHcC-CC
Q 044872 191 QMPE---K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACASLGALELGVWASSFMERNE-FL 264 (604)
Q Consensus 191 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~-~~ 264 (604)
+... | +...+..+...|...|+.++|...+.++... .|+..+.. .+...+...| +.+...++.+.+.. ..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7642 3 3445677778888888889998888876553 44444333 3334455555 46666665554421 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044872 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMKDK 296 (604)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 296 (604)
+..... +-..|.-.|+-+.+..+ +++.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 111112 33345566777777666 766654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-09 Score=94.70 Aligned_cols=230 Identities=12% Similarity=0.056 Sum_probs=166.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044872 201 SSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
+-|..+|.+.|.+.+|.+.|+.-+.. .|-..||..+-.+|.+..+.+.|..++..-++.- +-|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888888888888888887765 3445567667777777777777777777666542 22444444556666677
Q ss_pred CCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044872 281 GRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 281 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
++.++|.++|+...+. ++.+...+..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|...+.++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7778888887776653 4555555666777777888888888888877753 45566666667777777766666665
Q ss_pred HchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 358 SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 358 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
..... +-+.++ -..+|-.|.......||+..|.+.|+-.+.-+|++..+
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 54421 111111 23467667667778899999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
++.|+-.-.+.|+.++|+.+++...+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999887754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-07 Score=88.24 Aligned_cols=373 Identities=15% Similarity=0.126 Sum_probs=228.3
Q ss_pred HHhcCChHHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChH
Q 044872 75 YVHCGYLADALKVFDDIPD------KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLS 148 (604)
Q Consensus 75 ~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 148 (604)
+....++..|+.+++--.. .++..| +...+.+.|++++|+..|.-+.+.. .|+......+.....-.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3345677777777654322 133334 4467788999999999999887753 456666666666666778888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 044872 149 TAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENL 228 (604)
Q Consensus 149 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 228 (604)
+|+++-... +.++.-...|.+.-.+.++-++-..+-+.+.+.. .---+|.+..-..-++++|++++.+....
T Consensus 109 eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 109 EAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 888877653 2244445556677778888777666655554321 22233444444555789999999999875
Q ss_pred CCCHHHHHHHHH-HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHH--HHHHhcC---------
Q 044872 229 KPEYYTMVGVLS-ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK--CGRMAQAC--KVFREMK--------- 294 (604)
Q Consensus 229 ~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~--~~~~~~~--------- 294 (604)
.|+....+.-+. ++.+..-++.+.+++..-++.-. .++...|....-..+ .|+..+++ .+-+...
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 466666665444 45666777777777776665432 233333433333322 23322211 1111111
Q ss_pred -CCC---------------------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccC
Q 044872 295 -DKD---------------------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG-----CTHAG 347 (604)
Q Consensus 295 -~~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-----~~~~g 347 (604)
+.| +..--.++--|.++++..+|..+.+++.- ..|-......+..+ .....
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 011 11222344557788999999998887543 34444333333322 22223
Q ss_pred cHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 044872 348 LVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMP--MEPNAIVWGALLAGCRLHKKTDLAEHVL 424 (604)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 424 (604)
.+.-|.+.|+..-+. +...| +.--.++...+.-..++++.+-.++.+. +..|...--.+..+....|++.+|+++|
T Consensus 338 HlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 456677777766543 44433 3334456666666778888888888772 2223333334788899999999999999
Q ss_pred HHHHccCCCCchhH-HHHHHHHHhcCChHHHHHHHHHHh
Q 044872 425 NQLIALEPWNSGNY-VLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 425 ~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
-++...+-.|...| ..|+.+|.++|+.+-|+.++-++.
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 88876664454555 457899999999999988876553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-06 Score=86.34 Aligned_cols=426 Identities=13% Similarity=0.065 Sum_probs=246.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhC
Q 044872 33 FPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINE 109 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 109 (604)
|..+++.+ ..+++..++.+.+.+++. ++....+.....-.+...|+.++|......-.. ++.+.|..+.-.+-..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 33444433 456777777777777763 222233333222233445788888777765443 3566788887777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDS-FSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRV 188 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (604)
.++++|+..|+..+.. .||. ..+.-+.-.-++.++++.....-....+.. +.....|..++-++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888764 3443 344444444456677776666655555543 33455677777777777888888777
Q ss_pred HccCCC-----CCcchHHH------HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCchHHHHHHHH
Q 044872 189 FDQMPE-----KDIVSWSS------MIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACASLGALELGVWASS 256 (604)
Q Consensus 189 ~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~ 256 (604)
.+...+ ++...+.- .......+|..++|++.+..-... ..|...+. .-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 665432 22222221 123455677777777766554332 12333332 33445567788888888888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCCc--ccHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCC
Q 044872 257 FMERNEFLSNPVLGTTLIDMYAKCGRMAQAC-KVFREMKDKDQ--VVWNAVVSGLSMNGYV-KVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 257 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~ 332 (604)
.++..... +...|-.+..++.+-.+.-++. .+|....+.-. ..-..+--...+.... +..-.++..+.+.|++|-
T Consensus 244 ~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 244 RLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 77776422 3333444444554333333333 56665543100 0000000011111222 334456677778887664
Q ss_pred HHHHHHHHHHHhccCcHHH-HHHHHHHchhhc-------C--CCCchHHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 044872 333 GNTFVGLLCGCTHAGLVDE-GRQFFNSMSRVF-------S--LTPMIEHY--GCMVDLLGRSGQLDEAHELIKSM-PMEP 399 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~~~-------~--~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p 399 (604)
-.++.++..-=.+..-+++ +..+...+.... + -+|+...| -.++..|-+.|+++.|..+++.. +-.|
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP 402 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP 402 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc
Confidence 4444444321111111111 122222222110 0 14554444 45678888999999999999987 6667
Q ss_pred CHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 400 NAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 400 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
+.+ .|..=.+.+...|+++.|...++++.+++-.|...-.--+.-..++.+.++|.++.......|.
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 766 5656667788899999999999999999866654433566667789999999999998887664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-08 Score=91.94 Aligned_cols=199 Identities=15% Similarity=0.062 Sum_probs=103.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...+....+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3456677777778888888888887776542 122344444555555555555555555555543321 23333344444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
+...|++++|.+.+++.......| ....+..+..++...|++++|...
T Consensus 109 -------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 -------------------------------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------------------HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555555555544421111 123334444455555666666666
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555532 1112344555555666666666666666554 2122 3344445555556666666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=89.41 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=136.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
...+.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 34466688889999999999999888 56765 578888888999999999999999887 44554 6678888888
Q ss_pred HhhcCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH
Q 044872 379 LGRSGQLDEAHELIKSM---PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~---~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 454 (604)
++..|++++|...|++. |.-|. ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999988 33333 348888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 044872 455 AKIRSMMGDKGI 466 (604)
Q Consensus 455 ~~~~~~m~~~~~ 466 (604)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-06 Score=89.49 Aligned_cols=421 Identities=14% Similarity=0.088 Sum_probs=262.8
Q ss_pred cCCchHHHHH----HHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 8 NDCFQHAIEF----YNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 8 ~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
..+.+++.-. +.++....++.|...|-.+.-+....|+++.+-+.|++....-+. ....|+.+-..|+.+|.-..
T Consensus 297 Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~ 375 (799)
T KOG4162|consen 297 RENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSK 375 (799)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchH
Confidence 3344455433 333333446668888988888888999999999999998775433 56678888899999999999
Q ss_pred HHHHhccCCC----CC-cccHHHHHHHHHh-CCChhHHHHHHHHHHH--CCCC--CChhhHHHHHHHHhc----CCC---
Q 044872 84 ALKVFDDIPD----KN-VVSWTAIISGYIN-EGNLEEAINMFRRLLH--RGLK--PDSFSIVRVLTACTQ----LGD--- 146 (604)
Q Consensus 84 A~~~f~~~~~----~~-~~~~~~li~~~~~-~g~~~~A~~~~~~m~~--~g~~--p~~~t~~~ll~~~~~----~g~--- 146 (604)
|..+.+.-.. |+ ...+-..-..|.+ .+..+++++.-.+... .+.. .....|..+.-+|.. ...
T Consensus 376 Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 376 AVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH
Confidence 9999976543 22 2222222233333 4777888877777665 1111 122333333333321 111
Q ss_pred ----hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC----CCCcchHHHHHHHHHhCCCchHHHH
Q 044872 147 ----LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP----EKDIVSWSSMIQGYASNGFPKEALD 218 (604)
Q Consensus 147 ----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 218 (604)
..++.+.++..++.+. .|+.+.--+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.
T Consensus 456 R~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 2345667777777653 233333345556788889999988776653 3578899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH---------------------HcCCC-------CchhHH
Q 044872 219 MFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFME---------------------RNEFL-------SNPVLG 270 (604)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~~~~-------~~~~~~ 270 (604)
+.+.....- .-|..-...-++.-...++.+++......++ +.|+. -...++
T Consensus 535 vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 535 VVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 988776531 1111111111111111233333222211111 11110 012222
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhcCCCC------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 044872 271 TTLIDMYAK---CGRMAQACKVFREMKDKD------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLL 340 (604)
Q Consensus 271 ~~li~~~~~---~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 340 (604)
..+...... .-..+.....+...+.++ ...|......+...+..++|...+.+... +.|- ...|....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G 691 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRG 691 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhh
Confidence 222221111 111111112222222232 12456666778889999999988888776 4453 34555555
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHE--LIKSM-PMEP-NAIVWGALLAGCRLHK 415 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~~ 415 (604)
..+...|..++|.+.|.... -+.|+ +...+++..++.+.|+..-|.. ++..+ .+.| +...|-.+...+.+.|
T Consensus 692 ~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 67778899999999999877 56776 6778899999999998777777 77777 6666 5669999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCch
Q 044872 416 KTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~ 436 (604)
+.+.|.+.|..+.++++.+|.
T Consensus 769 d~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred chHHHHHHHHHHHhhccCCCc
Confidence 999999999999999887663
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-06 Score=86.64 Aligned_cols=254 Identities=15% Similarity=0.131 Sum_probs=136.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 201 SSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
..+...|-..|++++|++++++..+. .|+ ...|..-...+-+.|++.+|....+.....+.. |..+-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 44556666777777777777776664 344 345556666677777777777777777666543 66666667777777
Q ss_pred cCCHHHHHHHHHhcCCCCcc----------cH--HHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CCC----------
Q 044872 280 CGRMAQACKVFREMKDKDQV----------VW--NAVVSGLSMNGYVKVAFGVFGQLEKC--GI---QPN---------- 332 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~---------- 332 (604)
+|++++|.+++......+.. .| .....+|.+.|++..|++-|....+. .+ +-|
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence 77777777777766654321 22 22345677777777777666554331 01 112
Q ss_pred HHHHHHHHHHHhccC-------cHHHHHHHHHHchhhcCCCC-----------chHHHHHHHHHH---hhcCCHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAG-------LVDEGRQFFNSMSRVFSLTP-----------MIEHYGCMVDLL---GRSGQLDEAHEL 391 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~~ 391 (604)
..+|..++.-.-+.. -...|.+++-.+........ +..--..+-.-- .+...-+++...
T Consensus 355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~ 434 (517)
T PF12569_consen 355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKA 434 (517)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 223333333211111 11233334333332100000 000001111000 011111111111
Q ss_pred HH-----------hC----CCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHH
Q 044872 392 IK-----------SM----PMEPNAIVWG-ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 392 ~~-----------~~----~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 455 (604)
-. +. +.++|..... .|+ ....-+++|.+.++-+.+..|++..+|..-..+|.+.|++--|.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 435 AKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 10 00 1111221111 111 23445888999999999999999999999999999999999888
Q ss_pred HHHHH
Q 044872 456 KIRSM 460 (604)
Q Consensus 456 ~~~~~ 460 (604)
+.+.+
T Consensus 512 qaL~k 516 (517)
T PF12569_consen 512 QALKK 516 (517)
T ss_pred HHHHh
Confidence 77653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=91.18 Aligned_cols=226 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 101 AIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180 (604)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (604)
-|..+|.+.|.+.+|...|+.-++. .|-..||..+-++|.+..++..|..++.+.++. ++-|+.........+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555555443 233344444555555555555555555554443 2334444444444555555
Q ss_pred CHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 044872 181 NMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSF 257 (604)
Q Consensus 181 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 257 (604)
+.++|.++|+...+ .++.+...+..+|.-.++++-|+.+|+++++.|+. +...|..+.-+|.-.++++.+..-+.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 55555555554433 23333333444444455555555555555554432 233344444444444444444444433
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044872 258 MERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFV 337 (604)
Q Consensus 258 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 337 (604)
....-..|+ .-...|..+.......|++..|.+.|+-....+ .-+...++
T Consensus 384 Alstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealn 433 (478)
T KOG1129|consen 384 ALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALN 433 (478)
T ss_pred HHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHH
Confidence 333221111 012345555555555566666666665555432 11234555
Q ss_pred HHHHHHhccCcHHHHHHHHHHch
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.|.-.-.+.|++++|..++....
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhh
Confidence 55555556666666666666555
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-07 Score=90.26 Aligned_cols=226 Identities=13% Similarity=-0.016 Sum_probs=140.7
Q ss_pred CchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044872 212 FPKEALDMFYNMQREN-LKPE--YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACK 288 (604)
Q Consensus 212 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (604)
..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+...++... .++..++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555321 1222 22344444555666677777666666666542 256777888888888888888888
Q ss_pred HHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC
Q 044872 289 VFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 289 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
.|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 8888754 3 356777788888889999999999999887 456543222222234456788999999976553 22
Q ss_pred CCchHHHHHHHHHHhhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-ch
Q 044872 366 TPMIEHYGCMVDLLGRSGQLDE--AHELIKSM-PM----EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-SG 436 (604)
Q Consensus 366 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-~~ 436 (604)
.|+...+ .++.. ..|++.+ +.+.+.+. .. .| ....|..+...+...|++++|...|+++++.+|.+ ..
T Consensus 196 ~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3332222 23333 3444433 33333221 11 12 23478889999999999999999999999999744 44
Q ss_pred hHHHHHHHH
Q 044872 437 NYVLLSNIY 445 (604)
Q Consensus 437 ~~~~l~~~~ 445 (604)
.-..++...
T Consensus 273 ~~~~~~e~~ 281 (296)
T PRK11189 273 HRYALLELA 281 (296)
T ss_pred HHHHHHHHH
Confidence 433444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-05 Score=79.09 Aligned_cols=447 Identities=13% Similarity=0.041 Sum_probs=272.6
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
..+++...+.+.+..+..- +-...|....--.+...|+.++|.......++..+ .+.+.|..+.-.+....++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 4567777888888877742 22334444333334567888999888777766442 355678877777777789999999
Q ss_pred HhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-C
Q 044872 87 VFDDIP---DKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG-K 162 (604)
Q Consensus 87 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~ 162 (604)
.|.... ..|...|.-+.-.-++.|+++.....-.++.+.. +-....|.....+.--.|+...|..+.+...+.. -
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 998754 3477778877777778888888888888877752 2234457777777778899999999999888765 2
Q ss_pred CCChhHHHHHH------HHHHhcCCHHHHHHHHccCCCC--Cc-chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 044872 163 GRNVFVATSLV------DLYAKCGNMEKARRVFDQMPEK--DI-VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYY 233 (604)
Q Consensus 163 ~~~~~~~~~li------~~y~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 233 (604)
.|+...+.-.. ....+.|..++|.+.+..-... |- ..-.+-...+.+.+++++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 45554443322 2345678888888887665432 22 22334566788899999999999999875 57877
Q ss_pred HHHHHHHHHH-ccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-cccHHHHHHHHHh
Q 044872 234 TMVGVLSACA-SLG-ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-QVVWNAVVSGLSM 310 (604)
Q Consensus 234 t~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 310 (604)
-|.-.+..+. ... ..+....++....+.-.......... ++...-..-.+....++..+.++. +..+..+.+.|-.
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp-lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP-LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc-HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 7776665554 233 33333355555543321111111000 011111111122222333333322 2344444444433
Q ss_pred CCCHHHHHHHHHHHHH----CC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHH
Q 044872 311 NGYVKVAFGVFGQLEK----CG----------IQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYG 373 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~----~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (604)
....+-..++.-.+.. .| -+|... |+..+...+-+.|+++.|..+.+... +-.|+ ++.|.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~ 409 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYL 409 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHH
Confidence 2222211122222211 11 145543 45556677888999999999999888 44666 55676
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-------hhHHH--HH
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS-------GNYVL--LS 442 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~--l~ 442 (604)
.-...+...|.+++|..++++. .+ .||...-.--..-..+.++.++|.++.......+-+-. -.|.. =+
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 6678888999999999999988 22 24443322333445678889999998888765443111 12222 25
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 044872 443 NIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~ 462 (604)
.+|.++|++.+|.+-|..+.
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 67888888888877666554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-05 Score=76.80 Aligned_cols=262 Identities=12% Similarity=0.024 Sum_probs=175.3
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
.|+.....+...+...|+.++|...|++.+. +.|+..+-. .-.-.+...|+.+....+...+....-. +...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhh
Confidence 4566778888888888998888888888765 334332211 1111234566777666666665443211 11111111
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVV---SGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLV 349 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 349 (604)
........+++.|+.+-++..+.|.....++| ..+.+.|+.++|.-.|+..+. +.| +...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 22234456778888887777665444444433 567788899999999988877 666 447899999999999999
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHH-HHHhh-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMV-DLLGR-SGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLN 425 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 425 (604)
.+|.-.-+...+. ++.+..+.+.+. +.+.- ...-++|.+++++. .++|+-. ..+.+...|...|..+.+..+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 8888777665542 233444444332 22222 22346788888876 7778754 66777778889999999999999
Q ss_pred HHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 426 QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 426 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+.+...|++ ..+..|++++...+.+.+|...|......
T Consensus 463 ~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999888854 68888999999999999999998877653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-06 Score=84.11 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=155.2
Q ss_pred HHHhcCCHHHHHHHHccCCCCCcc--hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 044872 175 LYAKCGNMEKARRVFDQMPEKDIV--SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV 252 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (604)
+.....+|.+|..+++.+..+++. -|..+..-|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 344455666666666666554433 24555566666677777766665421 1334455666667766665
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 253 WASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
++-... .|.+.....|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-++|..+..+++..+ ..|+
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k-----~h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK-----HHGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----hChh
Confidence 554333 23333444555555555566777777777666666653 35667777777776666655 2344
Q ss_pred H--HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCC---C-CHHHHHH
Q 044872 333 G--NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPME---P-NAIVWGA 406 (604)
Q Consensus 333 ~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p-~~~~~~~ 406 (604)
. .|...+..-+...|++..|...|-.... |.+-+++|-..+.|++|.++-+.-+-. . -...|..
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3 4666777778888999999888776542 667788899999999998887765211 1 1123322
Q ss_pred HH------HHHHhcCChHHHH-------------HHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 407 LL------AGCRLHKKTDLAE-------------HVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 407 ll------~~~~~~~~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
-+ ..+.++|-++.|. .+.+-..+ ..-+....-++.-+...|++++|.+-+-+..+.+
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 11 2233445444443 33332222 2234567777888889999999988887777644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-07 Score=89.19 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=89.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGR 353 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 353 (604)
..+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~a----------- 172 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEA----------- 172 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHH-----------
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHH-----------
Confidence 34555667777777766554 3344444556666677777777777777665 33332 22222222
Q ss_pred HHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 354 QFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..++...|++++|+++++++++.+
T Consensus 173 ---------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 173 ---------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp ---------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred ---------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 222222223455666666665 223566667777777777777777777777777777
Q ss_pred CCCchhHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 044872 432 PWNSGNYVLLSNIYSASHKW-NDAAKIRSMMGD 463 (604)
Q Consensus 432 p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 463 (604)
|+++.+...++-+....|+. +.+.+++.++..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777777777 556667776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-06 Score=83.50 Aligned_cols=216 Identities=10% Similarity=0.013 Sum_probs=150.0
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc----------cHHHHH
Q 044872 236 VGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV----------VWNAVV 305 (604)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 305 (604)
..+.++.-...+++.+.+-+....... .+..-++....+|...|....+...-....+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345556666667778888777777665 46666777777888888877766655554432111 122233
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH-HHHHHHHHHhhcCC
Q 044872 306 SGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE-HYGCMVDLLGRSGQ 384 (604)
Q Consensus 306 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 384 (604)
.+|...++++.|+..|.+....-..||..+ +....+++....+... -+.|... -...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888766544444322 2233344444443332 3344431 11222566778999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 385 LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+..|...|.++ ...| |...|.....+|.+.|++..|..-.+..++++|+....|..=+.++.-..+|++|.+.|.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 4445 566888888899999999999999999999999999999999999999999999999999887
Q ss_pred hCC
Q 044872 463 DKG 465 (604)
Q Consensus 463 ~~~ 465 (604)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=94.12 Aligned_cols=218 Identities=14% Similarity=0.066 Sum_probs=170.1
Q ss_pred HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHH
Q 044872 243 ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
.+.|++..|.-.|+..++.... +...|.-|.......++-..|...+++..+- |....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4667888888888888887643 6777888888888888888888888887764 44556666677888899999999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 044872 320 VFGQLEKCGIQ--------PNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 320 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
.++.-+....+ ++..+-.. ........+....++|-.+....+..+|.++..+|.-+|--.|.+++|.+-
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99887653210 00000000 122223344555666766665556667888899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 392 IKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 392 ~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
|+.+ ..+|+ ..+||.|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 77775 569999999999999999999999999999999999999999999999999999999988765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-06 Score=75.06 Aligned_cols=164 Identities=16% Similarity=0.104 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGC 343 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 343 (604)
.++..+...|.+.|+.+.|.+.|++... .+-...|....-+|.+|++++|...|++....-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 3444444455555555555555554432 2334444455555555566666666655554321121 23555555555
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHH
Q 044872 344 THAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 344 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a 420 (604)
.+.|+.+.|..+|+...+ ..|+ ......+.......|++..|..+++.. ...++..+....|..-...||.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 556666666666665553 2232 334445555566666666666666655 2234555555555555666666666
Q ss_pred HHHHHHHHccCCCC
Q 044872 421 EHVLNQLIALEPWN 434 (604)
Q Consensus 421 ~~~~~~~~~~~p~~ 434 (604)
-+.-.++....|..
T Consensus 227 ~~Y~~qL~r~fP~s 240 (250)
T COG3063 227 QRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHhCCCc
Confidence 66555555555654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-06 Score=88.12 Aligned_cols=259 Identities=10% Similarity=0.082 Sum_probs=153.5
Q ss_pred HHHHhcCCHHHHHHHHccCCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 044872 174 DLYAKCGNMEKARRVFDQMPE--KDIVS-WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALEL 250 (604)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (604)
..+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|+.+... .|+...|...+..+.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc---
Confidence 445666777777777765443 23333 344556666777777777777777665 3555555444433321100
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc--ccHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 044872 251 GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ--VVWNAVVSGLSMNGYV-KVAFGVFGQLEKC 327 (604)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 327 (604)
+ ....+.+....+|+++....+ .+...+.-.+.....+ ..+...+..+...
T Consensus 87 -----------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 87 -----------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred -----------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 000122333333333322111 1111111111111112 2345566667777
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhc-------------CCCCchHHH--HHHHHHHhhcCCHHHHHHHH
Q 044872 328 GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF-------------SLTPMIEHY--GCMVDLLGRSGQLDEAHELI 392 (604)
Q Consensus 328 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~~~--~~li~~~~~~g~~~~A~~~~ 392 (604)
|+++- |..|-..|......+-..+++....... .-+|+...| ..+...|...|++++|++++
T Consensus 141 gvPsl---F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 141 GVPSL---FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred CCchH---HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 76543 3444444444444444444444433211 113444333 45567888999999999999
Q ss_pred HhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 393 KSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 393 ~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
++. ...|+.+ .|..-...+...|++++|.+.++.+.++++.|...-.-.+..+.++|+.++|.++.......+.
T Consensus 218 d~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 218 DKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 977 6667644 7777888899999999999999999999999887777788888999999999999998887665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00023 Score=75.27 Aligned_cols=145 Identities=14% Similarity=0.237 Sum_probs=117.4
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV 376 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 376 (604)
.+..|+.+..+-.+.|...+|++-|-+. -|...|..++..+++.|.+++-..++...+++ .-.|.++ +.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3467999999999999999999877542 36678999999999999999999999888765 5566654 5688
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 377 DLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
-+|++.+++.+-.+++. -||..-......-|...|.++.|.-+|.. .+.|.-|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887764 36777778888889999999999888863 4677778888888888888776
Q ss_pred HHHHHh
Q 044872 457 IRSMMG 462 (604)
Q Consensus 457 ~~~~m~ 462 (604)
.-++..
T Consensus 1242 ~aRKAn 1247 (1666)
T KOG0985|consen 1242 AARKAN 1247 (1666)
T ss_pred Hhhhcc
Confidence 655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-05 Score=87.37 Aligned_cols=259 Identities=14% Similarity=0.063 Sum_probs=146.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHc----CC-CCchhHHHHHHHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEY----YTMVGVLSACASLGALELGVWASSFMERN----EF-LSNPVLGTTLIDM 276 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~ 276 (604)
.+...|++++|...+++....-...+. .....+...+...|+++.|...+...... +. .........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566777777766665542111111 12233334455567777776666665432 10 0112233445556
Q ss_pred HHhcCCHHHHHHHHHhcCC-------CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKD-------KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC--GIQPN--GNTFVGLLC 341 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~ 341 (604)
+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...|. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6677777777776665432 11 112333444556668888888877776542 11122 223444455
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHH-----HHHHHHHhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY-----GCMVDLLGRSGQLDEAHELIKSMPM-E-PNA----IVWGALLAG 410 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~ 410 (604)
.....|++++|.+.++..............+ ......+...|+.+.|.+++..... . ... ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 6677888888888877764321111111111 1112344557888888888876621 1 111 123455666
Q ss_pred HHhcCChHHHHHHHHHHHccC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 411 CRLHKKTDLAEHVLNQLIALE------PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...|+.++|...++++++.. +....++..++.++.+.|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888999988888887532 112345667888888999999999998888764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-05 Score=81.23 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=80.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
+..|..+..+-.+.|...+|++-|-+. .|...|.-++..+.+.|.+++-..++..+.+..-+|. +-+.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence 456888888888888888888877432 3567788889999999999888888877777655554 34578888
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
|++.+++.+-+.++. -||+........-|...|.++.|.-+|.
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 999888887776643 3444444444555555555555544443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-05 Score=80.68 Aligned_cols=256 Identities=12% Similarity=-0.008 Sum_probs=142.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHH
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEY-YTMVGVLSACAS----LGALELGVWASSFMERNEFLSN-PVLGTTLIDMYA 278 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 278 (604)
..+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.... ..+..|+ ......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 3455667777777777776654 2332 22221 111111 2333333333332 1111222 333445556677
Q ss_pred hcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHH
Q 044872 279 KCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-QPNG--NTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a 352 (604)
..|++++|...+++..+ .+...+..+...|...|++++|..++++...... .|+. ..+..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 78888888888877654 2445666777778888888888888887766321 1222 2344566677788888888
Q ss_pred HHHHHHchhhcCCCCchHHH-H--HHHHHHhhcCCHHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 044872 353 RQFFNSMSRVFSLTPMIEHY-G--CMVDLLGRSGQLDEAHEL---IKSM-PMEPN---AIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
..+++.........+..... + .++..+...|....+.++ .... +..|. .........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 88888765321111211111 1 222333334432222222 1111 11011 1222345566778889999999
Q ss_pred HHHHHHccC-C--------CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 423 VLNQLIALE-P--------WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 423 ~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+++.+.... . .........+.++...|++++|.+.+.......
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 998876422 1 123455667788899999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00011 Score=73.44 Aligned_cols=407 Identities=14% Similarity=0.056 Sum_probs=238.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHH----HHHHHhCCC
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAI----ISGYINEGN 111 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~ 111 (604)
=+......+++++|.+.-..++..+ +.|......=+-...+.+++++|+++.+.-... .+++.. ..+.-+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3445567788999999999998876 444555555556677889999999777654321 122222 334457899
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 112 LEEAINMFRRLLHRGLKPD-SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR-NVFVATSLVDLYAKCGNMEKARRVF 189 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 189 (604)
.++|+..+. |..++ ..+...-...|-+.|+++++..+|+.+.+.+.+. +...-..++.+-. .-.+. +.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence 999999988 33333 3366666677889999999999999998876432 2222222322211 11121 34
Q ss_pred ccCCCCCcchHHH---HHHHHHhCCCchHHHHHHHHHHHCC-------CCCCH------HH-HHHHHHHHHccCchHHHH
Q 044872 190 DQMPEKDIVSWSS---MIQGYASNGFPKEALDMFYNMQREN-------LKPEY------YT-MVGVLSACASLGALELGV 252 (604)
Q Consensus 190 ~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~------~t-~~~ll~~~~~~~~~~~a~ 252 (604)
+..+.....+|.. ....+...|++.+|+++++...+.+ -.-+. .+ -.-+.-.+-..|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4444433334443 3456778999999999998883211 11111 11 112334456789999999
Q ss_pred HHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHH--HHHHHHHhcCCCCccc--------------H-HHHHHHHHhCC
Q 044872 253 WASSFMERNEFLSNP---VLGTTLIDMYAKCGRMA--QACKVFREMKDKDQVV--------------W-NAVVSGLSMNG 312 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~--------------~-~~li~~~~~~g 312 (604)
.++..+++......+ ...|.|+.+ ....++- .++..++......... . +.++..|. +
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 999999887654322 223334332 2222211 2333333332221111 1 22222222 2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA--GLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 389 (604)
..+.+.++-.... +..|. ..+..++..+... .....+..++....+. .+-. ..+.-.++......|+++.|.
T Consensus 322 k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 2233333332221 23333 3444555444332 2466777777766643 2222 445566778889999999999
Q ss_pred HHHH--------hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCC---CchhHHHHHHHHHhcCChHH
Q 044872 390 ELIK--------SM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA----LEPW---NSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 390 ~~~~--------~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~ 453 (604)
+++. .+ .+.-.+.+..++...+.+.++.+.|..++.+++. ..+. -...+..++..-.+.|+-++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 9998 44 2223344556677777788888888888888764 1121 12334445566678899999
Q ss_pred HHHHHHHHhh
Q 044872 454 AAKIRSMMGD 463 (604)
Q Consensus 454 A~~~~~~m~~ 463 (604)
|..+++++.+
T Consensus 477 a~s~leel~k 486 (652)
T KOG2376|consen 477 ASSLLEELVK 486 (652)
T ss_pred HHHHHHHHHH
Confidence 9999999976
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.6e-06 Score=74.84 Aligned_cols=412 Identities=14% Similarity=0.077 Sum_probs=225.1
Q ss_pred CCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC--CCcccHHH-
Q 044872 25 GFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD--KNVVSWTA- 101 (604)
Q Consensus 25 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~- 101 (604)
|+....--+.+++..+.+..++..+.+++..-.+.. +.+....+.|...|-...++..|...++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 333334446677777777777888888777655543 22444555666777777788888888877654 32222322
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH--hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTAC--TQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (604)
-...+-+.+.+.+|+++...|... |+...-..-+.+. -+.+|+..++.+.++... +.+..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeecc
Confidence 134555677888888887777542 2222222222222 245666666666655432 22444555555556677
Q ss_pred CCHHHHHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHccCchHHH
Q 044872 180 GNMEKARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYT-M---VGVLSACASLGALELG 251 (604)
Q Consensus 180 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~ll~~~~~~~~~~~a 251 (604)
|++++|.+-|+...+ .....||.-+. ..+.|+++.|++...++.+.|++..... . .-.+.+ ...|+ -
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t 232 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---T 232 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---h
Confidence 777777777776654 33455654443 3455677777777777777766421110 0 000000 00000 0
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 252 VWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
..++... =+..+|.-...+.+.|+.+.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+..
T Consensus 233 ~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0011000 0122333344567889999999999999854 677766554322 24555555555555655
Q ss_pred CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC-CchHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHH
Q 044872 327 CGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT-PMIEHYGCMVDLLGR-SGQLDEAHELIKSMPMEPNAIV 403 (604)
Q Consensus 327 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~ 403 (604)
. .| ...||..++-.|++..-++.|-.++.+-... ... .+...|+ |++++.. .-..++|.+-++.+...-....
T Consensus 305 ~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kL 380 (459)
T KOG4340|consen 305 Q--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKL 380 (459)
T ss_pred c--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 34 4579999999999999999888887643211 111 1233343 3344443 3456677665554410000000
Q ss_pred HHHHHHH-HHhcCChH----HHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 404 WGALLAG-CRLHKKTD----LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 404 ~~~ll~~-~~~~~~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
-..-+.. -.++.+-+ .+.+-+++.+++. ......-+++|++..++..+.++|....+
T Consensus 381 RklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 381 RKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 0001111 11222222 2333344444433 12556678899999999999999998765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-05 Score=84.00 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=111.5
Q ss_pred HHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchh
Q 044872 285 QACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 285 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
.|...+....+ .+...||+|.-. ...|.+.-|...|-+-... -+-+..+|..+.-.|....+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q- 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ- 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh-
Confidence 34444444332 455666665544 4445565555555554442 12244566666666777888999999998877
Q ss_pred hcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH----------H
Q 044872 362 VFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPNAIVWGALLAGCRLHKKTDLAEH----------V 423 (604)
Q Consensus 362 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~----------~ 423 (604)
.+.|+ ...|--........|+.-++..+|..- +-.|+...|..-..-...+|+.++-+. .
T Consensus 878 --SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 --SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred --hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 45664 445544444445678888888888652 334566666655555666666555444 3
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 424 LNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 424 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+++.+.-.|+...+|...+...-+.+.+.+|.+...+..
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445556679999999999999999999999888877664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-05 Score=80.69 Aligned_cols=359 Identities=15% Similarity=0.157 Sum_probs=212.4
Q ss_pred CCChhHHHHHH--HHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCC
Q 044872 62 DCDEFVKTSLL--NLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHR-G--------LKPD 130 (604)
Q Consensus 62 ~~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 130 (604)
.-|..+..+++ +.|..-|++|.|.+-.+-+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 34677777777 45778899999988776654 5578999999999999999888887777542 1 1232
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCC-cchHHHHHHHHHh
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKD-IVSWSSMIQGYAS 209 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 209 (604)
.+=..+.-....+|.+++|+.+|.+..+. ..|=..|-..|.+++|.++-+.=..-. -.||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22223333445788999999999988764 345567888899999998865432211 1355555666666
Q ss_pred CCCchHHHHHHHHHH----------HCCC---------CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 210 NGFPKEALDMFYNMQ----------RENL---------KPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~----------~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
.++.+.|++.|++-. .... .-|...|.--.......|+.+.|..++..+.+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 778888888876531 1100 11122222222223344444444444444332 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT------ 344 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~------ 344 (604)
-+++...+-.|+.++|-++-++- .|......+...|-..|++.+|...|.+.+. |...|+.|-
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 23344444455555555554432 2445555677888888888888888877654 223333222
Q ss_pred ---------ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHH-HhC----------CC--CCCHH
Q 044872 345 ---------HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELI-KSM----------PM--EPNAI 402 (604)
Q Consensus 345 ---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~----------~~--~p~~~ 402 (604)
...+.-.|-.+|++.- .. ..--+.+|-++|.+.+|+++- +.- .+ ..|+.
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g----~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELG----GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcc----hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 2334444555555432 11 122355788888888888763 211 11 22444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH------c----------------cCCCC---------chhHHHHHHHHHhcCCh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLI------A----------------LEPWN---------SGNYVLLSNIYSASHKW 451 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~------~----------------~~p~~---------~~~~~~l~~~~~~~g~~ 451 (604)
..+.-..-+..+.++++|..++-... + +-|.. ......+++.|.++|.|
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 55444444566667777765543321 1 11211 13667789999999999
Q ss_pred HHHHHHHHHH
Q 044872 452 NDAAKIRSMM 461 (604)
Q Consensus 452 ~~A~~~~~~m 461 (604)
..|.+-|.+.
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 8887766543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-05 Score=81.73 Aligned_cols=232 Identities=15% Similarity=0.210 Sum_probs=146.0
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044872 207 YASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQA 286 (604)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (604)
+.+.|+++.|+.-|-+.. .....+.+......+.+|..+++.+...... ...|..+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHH
Confidence 344555555555543321 1223345555667788888888877665433 33456677888888888888
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 044872 287 CKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 287 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
+++|-+.. .++-.|..|.+.|+++.|.++-.+... .......|..-..-.-..|.+.+|.+++-.+. .
T Consensus 785 e~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~ 852 (1636)
T KOG3616|consen 785 EELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----E 852 (1636)
T ss_pred HHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----C
Confidence 88887642 455667788888888888887665432 23334455555556677788888887775443 2
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
|+. -|.+|-+.|..++.+++.++.--..-..|...+..-+-..|++..|++-|-++ .-+..-.++|-
T Consensus 853 p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk 919 (1636)
T KOG3616|consen 853 PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYK 919 (1636)
T ss_pred chH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhh
Confidence 432 46778888888888888877621112335556666677778888887766543 23455677788
Q ss_pred hcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 447 ASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
.++-|++|.++-+.--..+..+....-|
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 8888888877755433333333333344
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-05 Score=71.14 Aligned_cols=290 Identities=16% Similarity=0.107 Sum_probs=188.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHc
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMI---QGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACAS 244 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~ 244 (604)
.--|.+.+...|++..|+.-|....+-|+..|-++. ..|...|+...|+.-|.+.++ ++||-..-. ---..+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334555666677777787777777776766666553 467777777777777777766 466643211 11223456
Q ss_pred cCchHHHHHHHHHHHHcCCCCc----hh----------HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHH
Q 044872 245 LGALELGVWASSFMERNEFLSN----PV----------LGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSG 307 (604)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~----~~----------~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 307 (604)
.|.++.|..-|+.+++.....+ .. .....+.-+...|+...|......+.+ -|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 7778888877777776543211 11 111123334556788888777776654 366666667778
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH----HHHHH---H----
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE----HYGCM---V---- 376 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i---- 376 (604)
|...|.+..|+.-++..-+.. .-+..++--+-..+...|+.+.++....+.. .+.||-. .|..| +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 888888888887777665521 2234555566666777788887777766665 4566632 22221 1
Q ss_pred --HHHhhcCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 377 --DLLGRSGQLDEAHELIKSM-PMEPNA--I---VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 377 --~~~~~~g~~~~A~~~~~~~-~~~p~~--~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
....+.++|.++.+-.+.. ...|.. + .+..+-..++..+++.+|++...++++.+|+|..++.--+.+|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 1233456677776666554 444542 2 3334445567788999999999999999999999999899999888
Q ss_pred CChHHHHHHHHHHhhC
Q 044872 449 HKWNDAAKIRSMMGDK 464 (604)
Q Consensus 449 g~~~~A~~~~~~m~~~ 464 (604)
..||+|+.-|+...+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999988888764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-05 Score=74.63 Aligned_cols=151 Identities=14% Similarity=0.039 Sum_probs=69.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhcCCHHHHHHHHccCCCCCc---chHHHHHHHHHhCCCchH
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNVFVAT---SLVDLYAKCGNMEKARRVFDQMPEKDI---VSWSSMIQGYASNGFPKE 215 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 215 (604)
...|+++.+..+++...+.. +.|...+. .+.......+..+.+.+.++.....+. ..+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34555666666655555542 22222222 111111223444444444443222111 122334445666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 216 ALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEF-LSNP--VLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 216 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
|...+++..+.. +.+...+..+..++...|++++|...+....+... .++. ..+..+...+...|++++|..+|++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666542 12233344444455555555555555555544321 1111 2233455556666666666666665
Q ss_pred cC
Q 044872 293 MK 294 (604)
Q Consensus 293 ~~ 294 (604)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 43
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-06 Score=91.40 Aligned_cols=198 Identities=12% Similarity=0.096 Sum_probs=166.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK--------DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFV 337 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 337 (604)
....|-..|......+++++|++++++.... -...|.+++..-...|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3556677777888899999999999987642 2458999998888889888899999999873 22346788
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP---NAIVWGALLAGCRL 413 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~ 413 (604)
.|+..|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-++|.+++.++ ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999776 55678999999999999999999999877 3223 33355566666789
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
.|+.+++..+|+..+...|.....|..++++-.+.|+.+.++.+|++....++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999987653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-06 Score=79.39 Aligned_cols=179 Identities=11% Similarity=-0.030 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-c---ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK--D-Q---VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG----NT 335 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 335 (604)
....+-.+...|.+.|++++|...|+++... + . ..|..+..+|.+.|++++|+..++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445556666777777777777777766542 1 1 24556667777777777777777777763 3322 13
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHchhhcCCCCch-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044872 336 FVGLLCGCTHA--------GLVDEGRQFFNSMSRVFSLTPMI-EHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGA 406 (604)
Q Consensus 336 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 406 (604)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33344444433 5667777777776643 3332 122111110 0000000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...+...|+++.|...++++++..|++ +.++..++.++.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556889999999999999999887654 468899999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-05 Score=81.75 Aligned_cols=382 Identities=15% Similarity=0.072 Sum_probs=222.3
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHH
Q 044872 61 LDCD-EFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGL-KPDSFSIV 135 (604)
Q Consensus 61 ~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~ 135 (604)
+.++ ...|..|...|...-+...|.+.|+...+ .+..+|......|++..+++.|..+.-..-+... ..-..-|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 3444 34788888999888889999999987665 4677899999999999999999998332222110 00111233
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHH---HHHHHHhCCC
Q 044872 136 RVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSS---MIQGYASNGF 212 (604)
Q Consensus 136 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~ 212 (604)
...-.+...++...+..-++...+.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-. ....-+..|.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 33345667788888888888887765 4588899999999999999999999998887655544332 2234567899
Q ss_pred chHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 213 PKEALDMFYNMQRE------NLKPEYYTMVGVLSACASLGAL-------ELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 213 ~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
+.+|+..+...... +..--..++..+...+...|-. +.+.+.+..........+...+-.+.
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----- 720 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-----
Confidence 99999988877542 1111122333333333333322 23333333333333233333333222
Q ss_pred cCCHHHHHHHHHhcCCCCcc--cHHHHHHH-HHhCCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----
Q 044872 280 CGRMAQACKVFREMKDKDQV--VWNAVVSG-LSMNGYV---K---VAFGVFGQLEKCGIQPNGNTFVGLLCGCTH----- 345 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----- 345 (604)
+|...|-... ++.+ .+..++.. .-..+.. + -|.+.+-.-+. ...+..++..+...|.+
T Consensus 721 -----dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 721 -----DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred -----HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHc
Confidence 2333333333 3311 11111111 1111111 1 11111111111 11122333333322222
Q ss_pred --cC-cHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 346 --AG-LVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 346 --~g-~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.+ +...|...+...++ ... +...|+.|. .+...|.+.-|..-|-+. -..| ...+|..+...|.+..+++.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~---L~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVS---LCANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred CCcchhHHHHHHHHHHHHH---HhhccHHHHHHHH-HhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 11 22355666665553 233 344555544 335556777666655444 2233 56688888888888889999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
|...|.....++|.|...+...+.+....|+.-++..+|..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999888888887777888887777777776
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-07 Score=58.00 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=26.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP 193 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 193 (604)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00041 Score=68.81 Aligned_cols=417 Identities=13% Similarity=0.012 Sum_probs=241.4
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCD-EFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 82 (604)
+.+..|+++.|+.+|.+.....+. |.+.|+.=..++++.|++++|.+=-...++. .|+ .--|+.+...+.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 456789999999999999887654 8888999999999999999888766666554 455 346777777777789999
Q ss_pred HHHHHhccCCCC---CcccHHHHHHHHHhCCChhHH-HHHHHHH-HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 044872 83 DALKVFDDIPDK---NVVSWTAIISGYINEGNLEEA-INMFRRL-LHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYV 157 (604)
Q Consensus 83 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 157 (604)
+|+..|.+-.+. |...++.+..++ ..+.+ .+.|..- .-.++.-++.|-.. .....+. .++..+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~-----~~~~~~~---~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYS-----LSDPAYV---KILEII 155 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhh-----hccHHHH---HHHHHh
Confidence 999999876542 455666666665 11111 1111100 00011112222111 1111111 111111
Q ss_pred HHh----CCC-CChhHHHHHHHHHHhcCCHHHHHHH--H-------ccCCC--CCc-------------chHHHHHHHHH
Q 044872 158 NEA----GKG-RNVFVATSLVDLYAKCGNMEKARRV--F-------DQMPE--KDI-------------VSWSSMIQGYA 208 (604)
Q Consensus 158 ~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~--~-------~~~~~--~~~-------------~~~~~li~~~~ 208 (604)
.+. +.. .|..+..++.......-....+... . ..+.+ |.+ .-.-.+.+...
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 110 000 0111111111100000000000000 0 00000 000 12344666667
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCchHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcC
Q 044872 209 SNGFPKEALDMFYNMQRENLKPEYYTM-VGVLSACASLGALELGVWASSFMERNEFLSN------PVLGTTLIDMYAKCG 281 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g 281 (604)
+..++..|++-+....... ...|| +....++...|........-...++.|...- ......+..+|.+.+
T Consensus 236 kkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7778888888888777643 34444 4445566777766666655555544442210 011122344777888
Q ss_pred CHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 282 RMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 282 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
+++.|...|.+....-.. -....+....++++.......- +.|+.. -...-...+.+.|++..|...|.+++
T Consensus 313 ~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999885432111 1112233345566665555544 445442 22233567788999999999999988
Q ss_pred hhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 361 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
+. -+.|...|....-.|.+.|.+..|++=.+.. ...|+.. .|..=..++.-..+++.|.+.|.+.++.+|++....
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 64 2445778998999999999999998876665 4555544 555556667777899999999999999999887776
Q ss_pred HHHHHHHHh
Q 044872 439 VLLSNIYSA 447 (604)
Q Consensus 439 ~~l~~~~~~ 447 (604)
..+.+++..
T Consensus 464 ~~~~rc~~a 472 (539)
T KOG0548|consen 464 DGYRRCVEA 472 (539)
T ss_pred HHHHHHHHH
Confidence 666666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00028 Score=73.08 Aligned_cols=206 Identities=12% Similarity=0.135 Sum_probs=124.9
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHh--------C-CCCChhHHHHHHH
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKA--------G-LDCDEFVKTSLLN 73 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g-~~~~~~~~~~li~ 73 (604)
+.|...|+.+.|++-.+.+. +...|..+.+.|.+..+++-|.-.+..|... . -.++ ..-....-
T Consensus 736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 56778899999988776553 3467999999998888888777766655321 1 1221 22222233
Q ss_pred HHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 044872 74 LYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWI 153 (604)
Q Consensus 74 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 153 (604)
.....|.+++|..++.+-.. |..|=..|-..|.+++|+++-+.=-+ +. =..||..-..-+-..+|.+.|.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHH
Confidence 34466888999988877654 34444566677888888887654322 21 224555555666667777777776
Q ss_pred HHHHHH----------hC---------CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--------------------
Q 044872 154 HGYVNE----------AG---------KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE-------------------- 194 (604)
Q Consensus 154 ~~~~~~----------~g---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------------- 194 (604)
|++.-. .. -..|...|.--....-..|+++.|+.+|....+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 653211 10 012333444444444556777777777765432
Q ss_pred ----CCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 044872 195 ----KDIVSWSSMIQGYASNGFPKEALDMFYNM 223 (604)
Q Consensus 195 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (604)
.|..+..-|...|-..|++.+|..+|.+.
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23344555666677777777777777654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-06 Score=81.17 Aligned_cols=151 Identities=18% Similarity=0.134 Sum_probs=77.2
Q ss_pred HHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchH
Q 044872 174 DLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS----LGALE 249 (604)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 249 (604)
.+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. . +..+...+..++.. ...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhHH
Confidence 3344455555555555443 23334444455555555555555555555442 1 22333333333322 12455
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCH-HHHHHHHHHHH
Q 044872 250 LGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYV-KVAFGVFGQLE 325 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 325 (604)
.|..+|+++.+. ..+++.+.|.+..++...|++++|++++.+.... |..+...++......|+. +.+.+.+.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555554332 3445566666666667777777777777666543 334444555555666666 55667777776
Q ss_pred HCCCCCC
Q 044872 326 KCGIQPN 332 (604)
Q Consensus 326 ~~g~~p~ 332 (604)
. ..|+
T Consensus 264 ~--~~p~ 268 (290)
T PF04733_consen 264 Q--SNPN 268 (290)
T ss_dssp H--HTTT
T ss_pred H--hCCC
Confidence 6 3454
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-05 Score=86.60 Aligned_cols=359 Identities=12% Similarity=0.002 Sum_probs=219.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHhccCCC----CCcccHHHHHHHHHh
Q 044872 34 PFVLKACAREHDFQLGVRSHSLIVKAGLDCDE-FVKTSLLNLYVHCGYLADALKVFDDIPD----KNVVSWTAIISGYIN 108 (604)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~ 108 (604)
......+...|++..+... ....+..+.. .............|+++.+..+++.++. .+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~---a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHH---ALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHH---HHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3444556667777665543 3333211100 1111122334566888888888887752 233333444555667
Q ss_pred CCChhHHHHHHHHHHHCC--C----CCChh--hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHH
Q 044872 109 EGNLEEAINMFRRLLHRG--L----KPDSF--SIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNV----FVATSLVDLY 176 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y 176 (604)
.|++++|...+......- . .|... ........+...|+++.+...++...+.-...+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 889999999888775421 0 11111 1122233456789999999999888764222221 3456677778
Q ss_pred HhcCCHHHHHHHHccCCC-------CC--cchHHHHHHHHHhCCCchHHHHHHHHHHH----CCCC--C-CHHHHHHHHH
Q 044872 177 AKCGNMEKARRVFDQMPE-------KD--IVSWSSMIQGYASNGFPKEALDMFYNMQR----ENLK--P-EYYTMVGVLS 240 (604)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~ 240 (604)
...|++++|...+++... +. ..+++.+...+...|++++|...+++... .+.. | ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 889999999888877642 11 12445566778889999999998887654 2221 1 2233444455
Q ss_pred HHHccCchHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-CcccHHH-----HHH
Q 044872 241 ACASLGALELGVWASSFMERN----EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD----K-DQVVWNA-----VVS 306 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~-----li~ 306 (604)
.+...|+++.|...+...... +.......+..+...+...|+.+.|...++.... . ....+.. .+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 566779999999888877542 2111234445567778889999999888877632 1 1111211 224
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCCc-hHHHHHHHHHH
Q 044872 307 GLSMNGYVKVAFGVFGQLEKCGIQPNG---NTFVGLLCGCTHAGLVDEGRQFFNSMSRV---FSLTPM-IEHYGCMVDLL 379 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~ 379 (604)
.+...|+.+.|..++.+.......... .....+..++...|+.++|...++..... .+..++ ..+...+..+|
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 455688999999988775442111111 12345666788889999999988876542 233332 34566677888
Q ss_pred hhcCCHHHHHHHHHhC
Q 044872 380 GRSGQLDEAHELIKSM 395 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~ 395 (604)
.+.|+.++|.+.+.+.
T Consensus 742 ~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 742 WQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999998877
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.6e-06 Score=75.30 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=92.5
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGC-RLHKK--TDLA 420 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~~~--~~~a 420 (604)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45566666666666532 2345777888888888888888888888877 5555 455777777764 66676 5899
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.++++++++.+|+++.++..++..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999998754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.1e-06 Score=74.28 Aligned_cols=304 Identities=15% Similarity=0.140 Sum_probs=154.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHHH-HHHHHHhC
Q 044872 134 IVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWSS-MIQGYASN 210 (604)
Q Consensus 134 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 210 (604)
+.+++..+.+-.+++.+.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3344444444445555555555444432 22444455566666666666666666666543 22222221 13344556
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044872 211 GFPKEALDMFYNMQRENLKPEYYTMVGVLSA--CASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACK 288 (604)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (604)
+.+.+|+++...|... |+...-..-+.+ .-+.+++..++.+.++.-.. .+..+.+...-...+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6677777776666432 221111111111 11233444444444333211 122222333333445666666666
Q ss_pred HHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 044872 289 VFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS 364 (604)
Q Consensus 289 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 364 (604)
-|+...+ .....||..+.- .+.|+++.|+++..+.+++|++-.+.. ..|...++..+ +. -
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDv-rs-----v 229 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDV-RS-----V 229 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCch-hc-----c
Confidence 6665544 233445544433 345666666666666666655321110 00000000000 00 0
Q ss_pred CCCchHHHHHHH-------HHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 365 LTPMIEHYGCMV-------DLLGRSGQLDEAHELIKSMPM----EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 365 ~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
-.|-.-+-+.++ ..+.+.|+++.|.+-+-.||- ..|++|...+.-. -..+++..+.+-+.-+++++|-
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 001111223333 335678899999999988842 2466766554322 2345566677777778888988
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 434 NSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
.+.++..+.-+|++..-++-|..++-+-
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 8889999999999998888888876643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=71.99 Aligned_cols=121 Identities=9% Similarity=-0.011 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 044872 319 GVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-P 396 (604)
Q Consensus 319 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 396 (604)
.+|++..+ +.|+. +.....++...|++++|...|+.+.. ..| +...+..+..++.+.|++++|...|+.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555555 44553 33455566677777777777777663 334 4566667777777777777777777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 397 MEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 397 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
..| +...|..+..++...|+.++|...++++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344 45577777777777777777777777777777777777766665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=73.71 Aligned_cols=106 Identities=10% Similarity=-0.061 Sum_probs=91.0
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
+++... .+.|+. +..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...|+++++++|
T Consensus 15 ~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 345553 556778889999999999999987 5555 566999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 433 WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 433 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+++..+..++.++...|++++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00035 Score=65.20 Aligned_cols=333 Identities=14% Similarity=0.127 Sum_probs=188.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhH-HH
Q 044872 95 NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRV---LTACTQLGDLSTAKWIHGYVNEAGKGRNVFV-AT 170 (604)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~ 170 (604)
++.---.+...+...|++.+|+.-|...++. |+..|.++ ...|...|....|..=+..+++. .||-.. --
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3334445667778888899999988888763 33334443 34677788888888877777764 455321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALEL 250 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (604)
.-...+.+.|.++.|..-|+.+.+.++.- +....++.+.-..++-. .....+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhh
Confidence 22345678888888888888876533210 00011111110011111 11112222333444444
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 044872 251 GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327 (604)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 327 (604)
+......+++.. ..|...+..-..+|...|++..|..-++...+ .+....--+-..+-..|+.+.++...++-.+
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 444444444433 22445555555555666666555544443322 2333444444445555566555555555554
Q ss_pred CCCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHchhhcCCCCch-----HHHHHHHHHHhhcCCHHHHH
Q 044872 328 GIQPNGNT----FVGL---------LCGCTHAGLVDEGRQFFNSMSRVFSLTPMI-----EHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 328 g~~p~~~t----~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~ 389 (604)
+.||... |..+ +......+.+.++.+..+...+. .|.. ..+..+-..+...|++.+|+
T Consensus 252 -ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 -LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred -cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHH
Confidence 4455421 1111 01122345666666666666532 3431 22334446677789999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 390 ELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 390 ~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
+...+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+|++..+-.-+ +.|.++.++..+++.
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHhccchH
Confidence 988877 67776 55888888899999999999999999999999876443332 566666666655544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=86.36 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=106.8
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGC 374 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (604)
++..+-.|.....+.|++++|..+++...+ +.||. .....+..++.+.+.+++|....+.... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777777888888999999999998888 77876 4566777788888999999988888874 3554 556677
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
+..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.++|...|+++++...+....|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 778888899999999999888 23444 568888888888899999999999988876644434443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-05 Score=83.51 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=179.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---CChhHHHHHHHHHHhcCChHHHHHHhccC
Q 044872 16 EFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG-LD---CDEFVKTSLLNLYVHCGYLADALKVFDDI 91 (604)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 91 (604)
+=|+++....+. +...|...+......++++.|+.+.+++++.= +. --..+|.+++++-...|.-+...++|++.
T Consensus 1445 eDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 345555554322 56678888888889999999999999988751 11 12347888888888888888999999988
Q ss_pred CCC-C-cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CChhH
Q 044872 92 PDK-N-VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKG-RNVFV 168 (604)
Q Consensus 92 ~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~ 168 (604)
.+- | -..|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++..+++.-.. -.+..
T Consensus 1524 cqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 762 3 456889999999999999999999999875 3346677888899999999999999999998886322 14556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEY--YTMVGVLSACA 243 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~ 243 (604)
..-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. +.|...|..--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 66777888999999999999998865 34678999999999999999999999999998887743 33444444433
Q ss_pred ccCchHH
Q 044872 244 SLGALEL 250 (604)
Q Consensus 244 ~~~~~~~ 250 (604)
+.|+-..
T Consensus 1683 ~~Gde~~ 1689 (1710)
T KOG1070|consen 1683 SHGDEKN 1689 (1710)
T ss_pred hcCchhh
Confidence 4444333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.5e-07 Score=55.66 Aligned_cols=33 Identities=42% Similarity=0.560 Sum_probs=26.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044872 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK 294 (604)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 294 (604)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667778888888888888888888888887774
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-05 Score=77.42 Aligned_cols=215 Identities=16% Similarity=0.137 Sum_probs=154.6
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 044872 141 CTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEAL 217 (604)
Q Consensus 141 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 217 (604)
+.+.|++..|.-.|+..++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888876 44677888888888888888888888877765 35566777778888888888999
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHccCchHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044872 218 DMFYNMQRENLK--------PEYYTMVGVLSACASLGALELGVWASSF-MERNEFLSNPVLGTTLIDMYAKCGRMAQACK 288 (604)
Q Consensus 218 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (604)
..|+.-.....+ ++..+-.. ........+....++|-. ....+..+|+.++..|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888887553210 00000000 011111223334444433 3445556788888888888999999999999
Q ss_pred HHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 289 VFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 289 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.|+.... .|...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|...|-.+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9998764 3678999999999999999999999999988 888863 44456667889999999988877554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=9e-05 Score=71.99 Aligned_cols=177 Identities=10% Similarity=0.047 Sum_probs=108.7
Q ss_pred CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 044872 282 RMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYV--KVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 282 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
+++++...++++.+ ++..+|+.....+.+.|+. ++++.+++++.+ ..| |...|.....++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35566666655543 2333455443334444442 556667767766 334 345666666666667777777777
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHH
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRS---GQ----LDEAHELIKSM-PMEP-NAIVWGALLAGCRLH----KKTDLAEH 422 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~ 422 (604)
++.+.+. . .-+...|+....++.+. |. .+++.++..++ ...| |...|+-+...+... ++..+|..
T Consensus 165 ~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 7777643 1 12344454444444333 22 24566666444 5555 556898888888773 44567888
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhcC------------------ChHHHHHHHHHHh
Q 044872 423 VLNQLIALEPWNSGNYVLLSNIYSASH------------------KWNDAAKIRSMMG 462 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 462 (604)
.+.++++.+|.++.++..|+++|.... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 899988889999999999999998643 2366777777773
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.2e-06 Score=69.17 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
.+..-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444445666678899999999999988 4455 55689999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhh
Q 044872 447 ASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~ 463 (604)
..|+.+.|.+-|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998876
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-05 Score=73.23 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cc---cHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFL-S-NPVLGTTLIDMYAKCGRMAQACKVFREMKD--KD-QV---VWN 302 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 302 (604)
....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777788889999999999999999876432 1 124667788899999999999999999865 22 22 355
Q ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 303 AVVSGLSMN--------GYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 303 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
.+..++.+. |+.++|.+.|+++.. ..|+.. ....+.... ... .... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~----~~~------~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD----YLR------NRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH----HHH------HHHH---------HHHH
Confidence 555566654 788999999999988 456542 221111110 000 0000 1122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
.+...|.+.|++++|...++.. |..|. ...|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788999999999998887 32333 45888899999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.4e-05 Score=67.50 Aligned_cols=154 Identities=10% Similarity=0.095 Sum_probs=115.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGR 353 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 353 (604)
+-.|.+.|+++......+.+..+. . .|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888887766554433321 0 1223566788888888877732 345678888888999999999999
Q ss_pred HHHHHchhhcCCCC-chHHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 354 QFFNSMSRVFSLTP-MIEHYGCMVDL-LGRSGQ--LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 354 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998884 345 56777777776 467777 59999999988 5556 5568888888999999999999999999
Q ss_pred HccCCCCchhHH
Q 044872 428 IALEPWNSGNYV 439 (604)
Q Consensus 428 ~~~~p~~~~~~~ 439 (604)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999887654443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-05 Score=68.66 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 044872 329 IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGA 406 (604)
Q Consensus 329 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 406 (604)
..|+......+-.++...|+-+....+...... .-..+......++....+.|++.+|...|.+. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 455443335555667777777777777766542 33345556666888888999999999999888 44567779999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+.-+|.+.|+++.|...|.+++++.|+++..+..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988876543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0047 Score=61.55 Aligned_cols=148 Identities=10% Similarity=0.015 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHH
Q 044872 314 VKVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 314 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
.+.....++++... .+.|+ .+|..+++.-.+..-++.|+.+|.++.+. +..+ ++.++++++.-|+ .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 44555666666542 23333 45777777777888888888888888876 5555 6777777777554 5777888888
Q ss_pred HHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcc--CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 392 IKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIAL--EPW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 392 ~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|+-- ..-+|.. --...+.-+...++-..+..+|++++.. .|+ ....|..+++--+.-|+...+.++-+++...
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8754 2234443 3455666677788888888888888865 333 2357888888888888888888887777654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.7e-05 Score=77.32 Aligned_cols=189 Identities=17% Similarity=0.144 Sum_probs=155.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLC 341 (604)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 341 (604)
+++|-...-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566678899999999999999999986 4788899999999999999999988877 5789999999999
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.......+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999999876532 1111222233478899998888765 5555 34588888888889999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|.+.|.....++|++..+|++++-+|.+.|+-.+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999988765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00016 Score=74.23 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=164.4
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 162 KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSA 241 (604)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (604)
++|--.....+...+.++|-..+|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455566677889999999999999999884 5788899999999999999998887776 37888888888888
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHH
Q 044872 242 CASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAF 318 (604)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 318 (604)
..+..-+++|.++.+..... ....+.....+.++++++.+.|+.-.+- -..+|-....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778887777665322 1122222233468888888888875543 3467888888888888999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 319 GVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 319 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+- + ..+...|...+-.....|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988877 67765 57888988999999999999888888753 4 333445666666777888999988888776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-05 Score=66.25 Aligned_cols=101 Identities=23% Similarity=0.260 Sum_probs=81.3
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH
Q 044872 365 LTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL 441 (604)
Q Consensus 365 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (604)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 345566667788888888888888877 4344 556788888888888999999999999999999988999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCC
Q 044872 442 SNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+.+|...|++++|...++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999998887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=52.56 Aligned_cols=35 Identities=37% Similarity=0.880 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDS 131 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 131 (604)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00029 Score=69.21 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=109.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL-LCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
+-...-.+...|.+++|+..++.+.. -.||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHH
Confidence 33334445567899999999999887 56766555544 467888999999999999888 44666 4455667788
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|+..|+|++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 99999999999999887 33346779999999999999877666654 456778899999999
Q ss_pred HHHHHhhCC
Q 044872 457 IRSMMGDKG 465 (604)
Q Consensus 457 ~~~~m~~~~ 465 (604)
......++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 988888753
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.001 Score=65.49 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=104.4
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~ 419 (604)
.....|.+++|+..++.+.+. .+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 355689999999999998853 3344666667779999999999999999998 66777 5578888899999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
|..+++....-+|+++..|..|+..|...|+..+|...+.++-.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887754
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.5e-06 Score=51.54 Aligned_cols=34 Identities=32% Similarity=0.666 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00024 Score=64.16 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=89.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhc
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRS 382 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 382 (604)
+-..+...|+.+.+..+..+... ..| |............+.|++.+|...|.+... .-++|...|+.+.-.|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 33445555555555555554332 122 223333455556666666666666666653 3345566666666666666
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044872 383 GQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 383 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
|++++|..-|.+. .+.| +....+.|...+.-.|+.+.|..++.......+.++..-..|+-+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666666555 3333 334556666666666777777777766666666666666666666667777766666533
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0012 Score=59.78 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH-H
Q 044872 381 RSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK-I 457 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~ 457 (604)
-.+.+.+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..+++++.+...++-.-...|+-.++.. .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 345677788888888 3567888888888888899999999999999999888888888888877777787665543 3
Q ss_pred HHHHh
Q 044872 458 RSMMG 462 (604)
Q Consensus 458 ~~~m~ 462 (604)
..+.+
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00051 Score=73.73 Aligned_cols=143 Identities=11% Similarity=0.114 Sum_probs=115.2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVG 338 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 338 (604)
...++..+..|.......|.+++|+.+++...+ | +...+..+..++.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 344678888899999999999999999999875 4 445677788899999999999999999998 567765 4555
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLA 409 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 409 (604)
+..++...|.+++|..+|+++... .+-+...+..+...+.+.|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 667888999999999999999852 2233678888999999999999999999988 33455556555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.022 Score=60.46 Aligned_cols=218 Identities=13% Similarity=0.119 Sum_probs=118.9
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH--HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKAC--AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
....+++..|+....++++.. |+. .|..+++++ .+.|..++|..+++.....+.. |..+...+-..|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 345677788888888877653 333 356666665 3677888888777766554433 6777888888888888888
Q ss_pred HHHHHhccCCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC-C---------hHHH
Q 044872 83 DALKVFDDIPDK--NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLG-D---------LSTA 150 (604)
Q Consensus 83 ~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~---------~~~a 150 (604)
+|..++++.... +......+..+|++.+.+.+-.+.--+|.+ ..+-+.+.|-++++.....- . +..|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 888888877653 333334445566776666544333333333 23345566666666543221 1 1223
Q ss_pred HHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHcc-----CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 151 KWIHGYVNEAG-KGRNVFVATSLVDLYAKCGNMEKARRVFDQ-----MPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 151 ~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
....+.+++.+ ..-+..=.-.-.......|.+++|.+++.. ...-+...-+.-+..+...++|.+-.++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 33444443332 111111111112233445666666666622 111223333344555556666666666666666
Q ss_pred HCC
Q 044872 225 REN 227 (604)
Q Consensus 225 ~~g 227 (604)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0004 Score=75.31 Aligned_cols=235 Identities=10% Similarity=0.005 Sum_probs=135.9
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhC
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASN 210 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 210 (604)
...+..|+..+...+++++|.++.+...+.. +.....|-.+...|.+.++.+++..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3456677777777777888777777665543 22233333344466666665555444 223333333
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 211 GFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVF 290 (604)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (604)
.++.-...+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 3442223333344332 2234466677777888888888888888888877 44777788888888877 888888877
Q ss_pred HhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch
Q 044872 291 REMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNT-FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI 369 (604)
Q Consensus 291 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 369 (604)
.+. +..|...+++.++.++|.++.. ..|+... |..+++ .+....+..--.
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~----------------ki~~~~~~~~~~ 223 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIER----------------KVLGHREFTRLV 223 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHH----------------HHHhhhccchhH
Confidence 664 3336666778888888888877 3454432 222222 222211222223
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
.++-.+..-|-...+++++.++++.+ ...| |.....-++..|+
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34444555566667777777777766 3333 3334555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-05 Score=74.07 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=97.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
...+++..+...+.++.|..+|+++.+. .|+. ...++..+...++-.+|.+++++. ...| +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666677777888888888887754 3543 344667777778888888888777 3334 5556666666788
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
..++++.|..+++++.+..|++..+|..|+.+|.+.|++++|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.8e-06 Score=50.34 Aligned_cols=34 Identities=24% Similarity=0.609 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKP 129 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 129 (604)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999998887
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0043 Score=67.58 Aligned_cols=277 Identities=9% Similarity=0.046 Sum_probs=174.5
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVL-TACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSL 172 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (604)
.+...|..|+..|...+++++|.++.+...+. .|+...+.... ..+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 46678999999999999999999999977664 55655433222 244455554444333 23
Q ss_pred HHHHHhcCCHHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 044872 173 VDLYAKCGNMEKARRVFDQMPE--KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALEL 250 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (604)
++......++.....+...|.+ .+..++..+..+|-+.|+.++|.+.++++++.. +-|....+.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333333344333333333332 233477788999999999999999999999865 34677788888888888 9999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC-CC
Q 044872 251 GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC-GI 329 (604)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 329 (604)
|.++...++.. |....++..+..++.++...++.-...+ ..+.+.+... |.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f-------------~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFF-------------LRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHH-------------HHHHHHHHhhhcc
Confidence 99888776553 6667788899999888876655433332 2333333332 22
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044872 330 QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGR-SGQLDEAHELIKSMPMEPNAIVWGAL 407 (604)
Q Consensus 330 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l 407 (604)
.--..++..+-..|....+++++..+++.+.+ ..| |.....-++..|.. -+......+.++..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s------------ 284 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMS------------ 284 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHHh------------
Confidence 23345566677788888999999999999884 344 34444444444431 11111111111111
Q ss_pred HHHHHhc-CChHHHHHHHHHHHccCCCCch
Q 044872 408 LAGCRLH-KKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 408 l~~~~~~-~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
..... .++..+..-|++.+.++|.+-.
T Consensus 285 --~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 285 --DIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred --ccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 12222 4567888889988888887643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.021 Score=57.14 Aligned_cols=430 Identities=11% Similarity=0.092 Sum_probs=251.5
Q ss_pred CCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC--CCcccHHHHHH
Q 044872 27 LPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD--KNVVSWTAIIS 104 (604)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 104 (604)
+-|..+|..|++-+... ..++++..++++... ++..+..|..-|..-.+..+++..+++|.+-.. -++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34888999999877555 899999999999875 566778899999998999999999999987554 47788888876
Q ss_pred HHHhC-CChhH----HHHHHHH-HHHCCCCCChh-hH---HHHHHHHhcCC------ChHHHHHHHHHHHHhCCCCChhH
Q 044872 105 GYINE-GNLEE----AINMFRR-LLHRGLKPDSF-SI---VRVLTACTQLG------DLSTAKWIHGYVNEAGKGRNVFV 168 (604)
Q Consensus 105 ~~~~~-g~~~~----A~~~~~~-m~~~g~~p~~~-t~---~~ll~~~~~~g------~~~~a~~~~~~~~~~g~~~~~~~ 168 (604)
---+. |+... -.+.|+- |.+-|+.+-+. .| ...+..--..| +++..++++..++...+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 43332 33332 2233333 23345443332 22 23333222233 45556677777665432211112
Q ss_pred HHHH------HHH-------HHhcCCHHHHHHHHccCCC------CCc---------------chHHHHHHHHHhCCCc-
Q 044872 169 ATSL------VDL-------YAKCGNMEKARRVFDQMPE------KDI---------------VSWSSMIQGYASNGFP- 213 (604)
Q Consensus 169 ~~~l------i~~-------y~~~g~~~~A~~~~~~~~~------~~~---------------~~~~~li~~~~~~g~~- 213 (604)
|+-. |+- --+...+..|+++++++.. ++. ..|-.+|.-=-.++.-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2111 110 1122345566666665431 111 1255555432222211
Q ss_pred -------hHHHHHHHH-HHHCCCCCCHHHHH-HHH----HHHHccCc-------hHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 214 -------KEALDMFYN-MQRENLKPEYYTMV-GVL----SACASLGA-------LELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 214 -------~~A~~~~~~-m~~~g~~p~~~t~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
....-.+++ |.--+..|+..-.. .-+ ..+...|+ .+++..+++..+..-...+..+|.++
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112222 12234444432111 111 12223333 34555566555543333344455444
Q ss_pred HHHHHhcC---CHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 044872 274 IDMYAKCG---RMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH 345 (604)
Q Consensus 274 i~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 345 (604)
.+---..- ..+.....++++.. .-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-+ -
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-C 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-h
Confidence 33211111 13334444444432 234567777777777778999999999999988888 455666666654 4
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM---PMEPN--AIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a 420 (604)
.++.+-|..+|+.=.+++|-. ..-....++-+...++-..|..+|++. .+.|| ...|..++.--..-|++..+
T Consensus 414 skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 688999999999877665433 344567788999999999999999988 23444 45999999999999999999
Q ss_pred HHHHHHHHccCCCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 421 EHVLNQLIALEPWNS----GNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
.++-++....-|.+. ..-..+.+.|.-.+.+..-..-++.|
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999988876555221 23345566666666655544444444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=70.69 Aligned_cols=127 Identities=14% Similarity=0.122 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHA 346 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 346 (604)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++++.... .| +...+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 334456666677888999999999988877777777888888888888999999888863 34 444555555667788
Q ss_pred CcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMPMEP 399 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 399 (604)
++++.|..+.+.+. ...|+ ..+|..|...|...|++++|+-.++.+|..|
T Consensus 248 ~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 88899999988887 44565 5688888899999999999998888887554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=49.02 Aligned_cols=34 Identities=26% Similarity=0.631 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 230 (604)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.001 Score=64.69 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=131.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNG-YVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAG 347 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 347 (604)
+-..+.+.+..++|..+...+.+. +..+|+.-...+...| .+++++..++++.+. .|+. .++..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 334455667788888888877653 3456666666666667 579999999999884 4443 45554444444555
Q ss_pred c--HHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC---
Q 044872 348 L--VDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH---KK--- 416 (604)
Q Consensus 348 ~--~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~--- 416 (604)
. .+++..+++.+.+ ..| +...|+...-++.+.|++++|++.++++ ...| |...|+.....+... |.
T Consensus 121 ~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 4 3677888888874 344 5677888888888999999999999998 4334 566887776665544 22
Q ss_pred -hHHHHHHHHHHHccCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHhh
Q 044872 417 -TDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS----HKWNDAAKIRSMMGD 463 (604)
Q Consensus 417 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 463 (604)
.+.+.....++++.+|+|..+|..+..++... ++..+|.+......+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 24677788899999999999999999999873 445667777666544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00025 Score=59.94 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=86.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 044872 320 VFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM 397 (604)
Q Consensus 320 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 397 (604)
++++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45544 44556667788889999999999888753 2335677788888899999999999998877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 398 EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 398 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.| +...|..+...+...|+.+.|...+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4567777888899999999999999999999998754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00035 Score=59.80 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=70.4
Q ss_pred cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~ 419 (604)
.++...+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+.. ...||. .....|...+...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56666666666666654322211 122233446666777777777777776 222332 234445566777788888
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
|...++.. .-.+..+..+..++++|.+.|++++|...|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88777552 223334566777888888888888888887754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0031 Score=56.78 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=111.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQVVWNAVV---SGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLV 349 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 349 (604)
++-+...+|+.+.|...++++.++=+.++.... .-+-..|++++|+++++.+.+.. +.|.+++..=+...-..|.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 333444567777777777766543222222111 12345788889999999888854 33556776666666667777
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH---KKTDLAEHVL 424 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~ 424 (604)
-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++ -+.| ++..+..+...+... .+.+.+.+.|
T Consensus 137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788877777765 45678888999999999999999999999888 3445 444555665554333 3788889999
Q ss_pred HHHHccCCCCchhHHH
Q 044872 425 NQLIALEPWNSGNYVL 440 (604)
Q Consensus 425 ~~~~~~~p~~~~~~~~ 440 (604)
.+.+++.|.+...+.-
T Consensus 215 ~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHhChHhHHHHHH
Confidence 9999998865544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.004 Score=56.54 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=91.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCc
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH----AGL 348 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 348 (604)
-...|...|++++|++.......-+....+ +..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 344566677777777776663222222222 23344556677777777777652 244555555555433 445
Q ss_pred HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 044872 349 VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKK-TDLAEHVLN 425 (604)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~ 425 (604)
+.+|.-+|++|.+ ...|+..+.+-...+....|++++|..+++.. ....++.+...++..-...|. .+--.+...
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 7777777777764 34666666666666677777777777777766 323345555555554444443 344456666
Q ss_pred HHHccCCCCc
Q 044872 426 QLIALEPWNS 435 (604)
Q Consensus 426 ~~~~~~p~~~ 435 (604)
++....|..+
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 6666667543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=56.14 Aligned_cols=93 Identities=22% Similarity=0.194 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
+..+...+...|++++|.+.+++. ...|+ ...|..+...+...++++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566777788888888888876 33443 3567777778888899999999999999888888888889999999999
Q ss_pred ChHHHHHHHHHHhhC
Q 044872 450 KWNDAAKIRSMMGDK 464 (604)
Q Consensus 450 ~~~~A~~~~~~m~~~ 464 (604)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.1e-05 Score=60.19 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044872 382 SGQLDEAHELIKSM-PMEP---NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 457 (604)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 2222 444566677788888888888888888 666676666777778888888888888888
Q ss_pred HHH
Q 044872 458 RSM 460 (604)
Q Consensus 458 ~~~ 460 (604)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0019 Score=58.05 Aligned_cols=160 Identities=15% Similarity=0.107 Sum_probs=124.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHh
Q 044872 302 NAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL-LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLG 380 (604)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 380 (604)
..++-+....|+.+.|...++++...- |.+.-...+ ..-+...|.+++|.++++.+.++ . +.|..++---+-+.-
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHHH
Confidence 334455667899999999999998753 554322211 12345679999999999999865 2 335666666666777
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC---ChHHHH
Q 044872 381 RSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH---KWNDAA 455 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 455 (604)
..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++=..|.++..+..+++.+...| +.+-|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788888888877776 455689999999999999999999999999999999999999999999987666 567788
Q ss_pred HHHHHHhhCC
Q 044872 456 KIRSMMGDKG 465 (604)
Q Consensus 456 ~~~~~m~~~~ 465 (604)
+++.+..+..
T Consensus 212 kyy~~alkl~ 221 (289)
T KOG3060|consen 212 KYYERALKLN 221 (289)
T ss_pred HHHHHHHHhC
Confidence 8888887644
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.4e-05 Score=55.31 Aligned_cols=64 Identities=20% Similarity=0.145 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHhh
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH-KWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 463 (604)
+..+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998875
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00027 Score=58.05 Aligned_cols=93 Identities=12% Similarity=0.017 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSN 443 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 443 (604)
+-.++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++++++..|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455556666666666666655 22222 2244445566666667777777777666666553 345666666
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 044872 444 IYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666777777777777666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.1e-05 Score=46.15 Aligned_cols=31 Identities=39% Similarity=0.839 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGL 127 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (604)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=52.97 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...+...|++++|...++++++..|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999999999999999999988764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00054 Score=56.27 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLA 409 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 409 (604)
+..+...+...|++++|.+.|+.+.+.+.-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555666666666666666654321111 1234455667777777777777777766 22233 346677777
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
.+...|+.+.|...++++++..|+++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888775543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.3e-05 Score=45.12 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI 329 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 329 (604)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.002 Score=55.07 Aligned_cols=114 Identities=20% Similarity=0.107 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch--HHHHHHHHHHhhcCC
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNG----NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI--EHYGCMVDLLGRSGQ 384 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~ 384 (604)
.++...+...++.+.... |+. .....+...+...|++++|...|+.+... ...|.. .....|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 566666666666666632 222 22333445566677777777777776654 222221 123334566667777
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 385 LDEAHELIKSMPME-PNAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 385 ~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+++|+..++..+.. .....+......+...|+.++|...|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777777665322 23345555566677777777777777664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00056 Score=68.09 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
+...|++++|++.|+++ ...| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455555555555555 3333 233555555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00048 Score=63.57 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=76.0
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDL 419 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~ 419 (604)
..+.+++++|+..|...+ .+.|+ ...|..-..+|.+.|.++.|++-.+.. .+.|... +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456777888888888777 45664 444455567888888888888877766 6667654 89999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
|++.|+++++++|++......|-.+--
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999988755555544433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=67.34 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=79.0
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 454 (604)
+-+.+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|.+-.+..++++|..+.+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3466789999999999887 6666 6677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 044872 455 AKIRSMMGD 463 (604)
Q Consensus 455 ~~~~~~m~~ 463 (604)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999998876
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.13 Score=54.83 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=126.1
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA-- 82 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-- 82 (604)
+.+.|+.++|..+++.....+.. |..|...+-.++...+..+++..+++..... .|+......+..+|++.+.+.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988766544 7788888888888999999999999998875 456777777888888877654
Q ss_pred --HHHHHhccCCCCCcccHHHHHHHHHhCC-Ch---------hHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHH
Q 044872 83 --DALKVFDDIPDKNVVSWTAIISGYINEG-NL---------EEAINMFRRLLHRGLKP-DSFSIVRVLTACTQLGDLST 149 (604)
Q Consensus 83 --~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~---------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 149 (604)
.|.+++...+.+ ...+-++++.+.+.- .+ .-|.+.++.+.+.+-+. +..-...-+..+...|+.++
T Consensus 130 Qkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 578888877654 444444555555432 12 23445556665543111 11122222334456788999
Q ss_pred HHHHHHH-HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 044872 150 AKWIHGY-VNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE 194 (604)
Q Consensus 150 a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 194 (604)
|..++.. ....-..-+...-+--++.+.+++++.+..++-.++..
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 9998843 33333344556667778899999999888777666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00083 Score=59.43 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666677778888887777766 22222 35777788888899999999999999999999888888888888
Q ss_pred HHhcCC
Q 044872 445 YSASHK 450 (604)
Q Consensus 445 ~~~~g~ 450 (604)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00084 Score=59.16 Aligned_cols=94 Identities=11% Similarity=-0.077 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
...+..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788889999999998877 33332 3478888889999999999999999999999998888888888
Q ss_pred HHH-------hcCChHHHHHHHHHHh
Q 044872 444 IYS-------ASHKWNDAAKIRSMMG 462 (604)
Q Consensus 444 ~~~-------~~g~~~~A~~~~~~m~ 462 (604)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887776666553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.011 Score=50.56 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC-CCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHH
Q 044872 329 IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL-TPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP---NAIV 403 (604)
Q Consensus 329 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 403 (604)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...+++. ...| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777888899999999999999998875 44 445667777788888899999999999887 2222 2234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 404 WGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 404 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.-.+.+.+...|...+|+..|+.++...| ++..-...+.++.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45567789999999999999999999888 456777788899999999988876665554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0028 Score=56.02 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN--GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGC 374 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 374 (604)
...+..+...+...|++++|...|++.......|. ...+..+...+.+.|++++|...+....+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34555666666677777777777777765332222 245556666667777777777777766632 33 2444445
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 375 MVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+..+|...|+...+..-++.. ...++.|.+.++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555555555554443222211 112577888888888888865 4445555544443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.004 Score=64.89 Aligned_cols=65 Identities=28% Similarity=0.223 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+...|.++.-.....|++++|...++++++++| +..+|..++.++...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566555555566777777777777777777 45677777777777777777777777766543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00041 Score=49.85 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=49.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345678889999999999888 55565 44888888899999999999999999999999864
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=64.74 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=64.6
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
....|++++|++.|+.+.+ ..| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3445666666666666653 233 3445555666666677777777776666 4444 34466677777777788888
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
|...++++++++|+++.....+..+..
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888877766666555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0032 Score=60.44 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=95.3
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG-CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL 378 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 378 (604)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 56667777777777888888888887532 2233344444333 333577777999999888754 4566778888999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 379 LGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 223333 4999999999999999999999999998888743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.002 Score=49.79 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 373 GCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
..+...+...|++++|.+.++.. ...| +..+|..+...+...|+.+.|...+++.++..|
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 38 YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 33344444444455555444443 2122 223455555555555666666666665555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00024 Score=51.70 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...|++++|.+.++++++.+|+++..+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788888999999998888988888888999999999999999888877654
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0019 Score=54.67 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=77.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
..-+-..|++++|..+|.-+ -.. -+..-|..|...|...++++.|...|..+..++++|+..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34455789999999999887 222 3566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 044872 454 AAKIRSMMGD 463 (604)
Q Consensus 454 A~~~~~~m~~ 463 (604)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00051 Score=50.73 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=50.9
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
..+.+.++++.|.++++++++++|+++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999999999999999999999999999888654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=60.54 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 366 TPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRL---HKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 366 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346788888999999999999999988877 4444 45566666666432 335788999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
|+-.+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.19 Score=48.90 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGR 353 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 353 (604)
|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... .- .++-|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHH
Confidence 44456678888888888888778888888888888888888776654322 12 2366777788888888888888
Q ss_pred HHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 354 QFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
.+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7776532 134567778888888887765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0092 Score=57.58 Aligned_cols=267 Identities=13% Similarity=0.010 Sum_probs=157.4
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCc
Q 044872 172 LVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGA 247 (604)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 247 (604)
..+.+.+..++..|+..+....+ .+..-|..-...+..-|++++|+--.+.-++ ++|. ..+....-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHH
Confidence 33455566666666666655443 2344455555666666666666655444333 2222 1233333333333444
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Cc--ccHHHHH-HHHHhCCCHHHHHHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQ--VVWNAVV-SGLSMNGYVKVAFGVF 321 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~li-~~~~~~g~~~~A~~~~ 321 (604)
..+|.+.+. +...+ ....|...++.+... .+ ..|..+- .++...|++++|.+.-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444443333 00000 111122222222211 12 2232222 3566678888888777
Q ss_pred HHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHchhhcCCCCchHHHH-------------HHHHHHhhcCCHH
Q 044872 322 GQLEKCGIQPNGNTFVGLL--CGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG-------------CMVDLLGRSGQLD 386 (604)
Q Consensus 322 ~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~ 386 (604)
....+ ..++.. +..++ .++...++.+.+...|++.. .+.|+-..-. -=.....+.|++.
T Consensus 193 ~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 66665 233221 22222 23455678888888888776 4455532211 1123456789999
Q ss_pred HHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 387 EAHELIKSM-PMEP-----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 387 ~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++...++|++|.+-+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 5444 4455666666778999999999999999999998888999999999999999999999998
Q ss_pred HhhCCC
Q 044872 461 MGDKGI 466 (604)
Q Consensus 461 m~~~~~ 466 (604)
..+...
T Consensus 347 a~q~~~ 352 (486)
T KOG0550|consen 347 AMQLEK 352 (486)
T ss_pred HHhhcc
Confidence 876433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0042 Score=59.59 Aligned_cols=129 Identities=9% Similarity=0.043 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR-SGQLDEAHELIKSM--PMEPNAIVWGALLAG 410 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 410 (604)
.+|..++....+.+.++.|+.+|..+.+.... +..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888999999999999999999854222 34455555555334 56666799999988 344577789999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNS---GNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...++.+.|..+|++.+..-|.+. ..|...++.-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998665543 47888888889999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00024 Score=43.06 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=30.7
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 424 LNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 424 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.014 Score=60.86 Aligned_cols=140 Identities=13% Similarity=0.071 Sum_probs=101.9
Q ss_pred CCCcccHHHHHHHHHh--CC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHch
Q 044872 295 DKDQVVWNAVVSGLSM--NG---YVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHA--------GLVDEGRQFFNSMS 360 (604)
Q Consensus 295 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 360 (604)
..|...|...+.+... .+ ....|..+|++..+ ..|+. ..+..+..++... ..+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3577899999887543 32 37789999999999 67876 4555544443222 12334444444433
Q ss_pred hhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 361 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.......+...|.++.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112334567777766667789999999999998 77788889999999999999999999999999999998874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.35 Score=50.17 Aligned_cols=202 Identities=11% Similarity=0.143 Sum_probs=115.1
Q ss_pred CCCcccHHHHHHHHHccCChHHHHHHHHHHHHh-CCC--------CChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcc
Q 044872 27 LPTNFTFPFVLKACAREHDFQLGVRSHSLIVKA-GLD--------CDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVV 97 (604)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 97 (604)
.|.+..|..+.......-.++.|...|-..... |+. .+...-.+=|.+ -.|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 355566766666555555566666655433111 110 111111122222 23788888888887777664
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044872 98 SWTAIISGYINEGNLEEAINMFRRLLHRGLKPD----SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLV 173 (604)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (604)
.|..+.+.|++-...++++. -|-..| ...+..+...++....++.|.+.+...-. ....+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 35666677777666655532 111111 23566666666666677777776654321 12356
Q ss_pred HHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHH
Q 044872 174 DLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVW 253 (604)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 253 (604)
.+|.+..++++-+.+-..+++. ....-.|...+.+.|..++|.+.|-+- + .| ...+..|..++++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHH
Confidence 6666767777766666666653 334556777888888888888776442 1 12 234567777777777766
Q ss_pred HHHH
Q 044872 254 ASSF 257 (604)
Q Consensus 254 ~~~~ 257 (604)
+-+.
T Consensus 900 laq~ 903 (1189)
T KOG2041|consen 900 LAQR 903 (1189)
T ss_pred HHHh
Confidence 5443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0034 Score=60.29 Aligned_cols=257 Identities=15% Similarity=0.030 Sum_probs=150.2
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCchHHHHHHHHHHHH--c--CCC-CchhHHHHHHHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEYYT----MVGVLSACASLGALELGVWASSFMER--N--EFL-SNPVLGTTLIDM 276 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~--~--~~~-~~~~~~~~li~~ 276 (604)
-+++.|+....+.+|+..++.|- -|..| |..+-.+|...+++++|.++|..=+. . |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 46677777777777777777653 23333 44455566667777777777644211 0 000 011111223333
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C--CcccHHHHHHHHHhCCC--------------------HHHHHHHHHHH---
Q 044872 277 YAKCGRMAQACKVFREMKD-------K--DQVVWNAVVSGLSMNGY--------------------VKVAFGVFGQL--- 324 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 324 (604)
+--.|.+++|.-.-.+-.. + ....+..+...|...|+ .+.|.+.|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445556655543322111 1 12233344455544432 23344444332
Q ss_pred -HHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH---chhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 044872 325 -EKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNS---MSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--- 395 (604)
Q Consensus 325 -~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--- 395 (604)
.+.|-.. -...|..|.+.|.-.|+++.|+..++. +.+.+|-+.. ...+..+...+.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1222111 113456666666678899999988874 2334444332 346777888888899999999988764
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----cC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 396 ----PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIA----LE--PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 396 ----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.+ ...-+.-+|.+.|....+++.|+..+.+-+. ++ .....++..|+++|...|..+.|..+...-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 2344677888999999999999998877553 22 22346888999999999999999887765543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=50.02 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGI-QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 388 (604)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777888888888777432 12344444567777777888888777776 2 22232 23333345667777777777
Q ss_pred HHHHHh
Q 044872 389 HELIKS 394 (604)
Q Consensus 389 ~~~~~~ 394 (604)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00073 Score=49.06 Aligned_cols=54 Identities=30% Similarity=0.336 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 382 SGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.|++++|.++|+++ ...| +...+..+...|...|++++|..+++++...+|+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 34444444444444 2222 333444444445555555555555555555555443
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0068 Score=47.47 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKCGI-QPNGNTFVGLLCGCTHAG--------LVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+|+.|... +++|+.++|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 345555666999999999999999999 899999999998766532 345567788888865 8888888888
Q ss_pred HHHHHHhh
Q 044872 374 CMVDLLGR 381 (604)
Q Consensus 374 ~li~~~~~ 381 (604)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88876654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=56.22 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC
Q 044872 200 WSSMIQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
+..+...+.+.|++++|+++|++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344556666677777777777666553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=47.74 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHK-KTDLAEHVLNQLIALEP 432 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 432 (604)
...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777788888888888888776 44554 448888888888888 79999999999988887
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.011 Score=59.09 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCcchHH
Q 044872 128 KPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG--KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE----KDIVSWS 201 (604)
Q Consensus 128 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~ 201 (604)
+.+...+..++..+....+++.++.++-...... ...-..+..++|..|.+.|..+++..+++.=.. +|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3344455555555555555555555555444331 111223334555555555555555555544332 4555555
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044872 202 SMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACA 243 (604)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (604)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 555555555555555555555555444444455544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.054 Score=52.19 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=62.8
Q ss_pred HHhcc-CcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC---CCC-----CCHH-HHHHH
Q 044872 342 GCTHA-GLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM---PME-----PNAI-VWGAL 407 (604)
Q Consensus 342 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~-----p~~~-~~~~l 407 (604)
.|... |++++|.+.|+...+-+..... ...+..+...+.+.|++++|.++|++. ... .+.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 45555 6666666666655543221111 234555667788888888888888776 111 1111 22222
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCch-----hHHHHHHHHH--hcCChHHHHHHHHHH
Q 044872 408 LAGCRLHKKTDLAEHVLNQLIALEPWNSG-----NYVLLSNIYS--ASHKWNDAAKIRSMM 461 (604)
Q Consensus 408 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m 461 (604)
+-.+...||...|...+++..+.+|.-.. ....|+.++- ....+++|..-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 33455678888888888888888775322 2333444442 223344555555444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0091 Score=48.53 Aligned_cols=86 Identities=16% Similarity=-0.012 Sum_probs=59.1
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---CchhHHHHHHHHHhc
Q 044872 377 DLLGRSGQLDEAHELIKSM---PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW---NSGNYVLLSNIYSAS 448 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 448 (604)
.++-..|+.++|..+|++. +.... ...+-.+.+.++..|++++|..++++..+..|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 4556677777777777765 22221 225556677788888888888888888777676 555666677778888
Q ss_pred CChHHHHHHHHHHh
Q 044872 449 HKWNDAAKIRSMMG 462 (604)
Q Consensus 449 g~~~~A~~~~~~m~ 462 (604)
|+.++|.+.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888887765543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0082 Score=47.02 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCChhHH
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGL-KPDSFSIVRVLTACTQLG--------DLSTAKWIHGYVNEAGKGRNVFVA 169 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 169 (604)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999876543 233466788999999999999999
Q ss_pred HHHHHHHHh
Q 044872 170 TSLVDLYAK 178 (604)
Q Consensus 170 ~~li~~y~~ 178 (604)
+.++....+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.64 Score=48.90 Aligned_cols=323 Identities=15% Similarity=0.110 Sum_probs=153.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHhccCCC--CCcccHHHHHHHHHhCC
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCG---YLADALKVFDDIPD--KNVVSWTAIISGYINEG 110 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 110 (604)
++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+=+++.. ....+|..+.+-.-+.|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 4555556677777777766552211111 466666666666653 22334444444444 46678888888778888
Q ss_pred ChhHHHHHHHHHHHCCCC----CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 044872 111 NLEEAINMFRRLLHRGLK----PDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKAR 186 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (604)
+++-|..+++.=...+-. .+..-+...+.-+...||.+...+++-++.+.- +...+ +....+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHHHhchhhh
Confidence 888888776542221100 122234455566666677666666655554421 11111 11112233444
Q ss_pred HHHccCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHH------HHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH-H-
Q 044872 187 RVFDQMPE-KDIVSWSSMIQGYASNGFPKEALDMFYNM------QRENLKPEYYTMVGVLSACASLGALELGVWASS-F- 257 (604)
Q Consensus 187 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~- 257 (604)
.+|.+..+ .|..+ + ..+.+.++-.+++.-|..= ...|..|+. .....++++........+..+ .
T Consensus 593 ~lY~~~~r~~~~~~---l-~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRAT---L-YDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchhh---h-hhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHH
Confidence 44444322 11111 1 1112222222222222110 011223332 223334443333211111111 1
Q ss_pred --------HH-HcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 044872 258 --------ME-RNEF-LSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327 (604)
Q Consensus 258 --------~~-~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 327 (604)
+. +.+. -.|..+ +--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl-~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSL-HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHHHHhccccccCcH-HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 10 1111 112222 22233344566667777776666666666666666666666666655544443321
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHH
Q 044872 328 GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELI 392 (604)
Q Consensus 328 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 392 (604)
+.-|.-...+|.+.|+.++|..++.... +.. -.+.+|.+.|++.+|.++-
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 2334455666667777777766665443 111 3456666666666666553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0066 Score=57.21 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHH
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLS 442 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 442 (604)
.|..-+..+.+.|++++|...|+.. ...|+. ..+--+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555555667777777777766 223332 355556677778888888888888888766664 44555667
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 044872 443 NIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=59.17 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHhccCCC-C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 044872 62 DCDEFVKTSLLNLYVHCGYLADALKVFDDIPD-K-----NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIV 135 (604)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 135 (604)
..+......+++......+++++..++-+... | -..+..++|+.|.+.|..++++.++..=...|+=||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444555666666666677777777765543 1 23355688888888888889988888888888888999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 136 RVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179 (604)
Q Consensus 136 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (604)
.++..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99998888899888888888887776656666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.025 Score=47.81 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAG 347 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 347 (604)
.+...+...|++++|.++|+.+.. .+..-|-.|..++-..|++++|+..|..... +.| |...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 344455678888888888887654 2456777788888888888888888888877 445 4467777778888888
Q ss_pred cHHHHHHHHHHchhhcCCCC
Q 044872 348 LVDEGRQFFNSMSRVFSLTP 367 (604)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p 367 (604)
+.+.|++.|+..+...+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 88888888887775443333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.52 Score=45.93 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRL 413 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 413 (604)
.+.+..+.-|...|....|.++-.. +.+ |+...|...+.+|+..++|++-.++... +..++-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455556666778888777766544 444 7888899999999999999988877654 3345778889999999
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
.|+..+|.....++ .+..-..+|.++|+|.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999998888761 22456788999999999988755443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.024 Score=49.81 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD--SFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++.+.+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555555566666666666666654322211 124555555555566666666665555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0053 Score=60.83 Aligned_cols=63 Identities=13% Similarity=-0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG---NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
...|+.+..+|...|++++|...|+++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666553 366666666666666666666666655
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.6 Score=46.21 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcc-------cHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 044872 269 LGTTLIDMYAKCGRMAQACKVFREMKD--KDQV-------VWNAVVSGLSM----NGYVKVAFGVFGQLEKCGIQPNGNT 335 (604)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 335 (604)
.+..++....+.++...|.+.+.-+.- |+.. +-.++-+..+. .-+...=+.+|+......+ |..-
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQ 377 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHH
Confidence 444555555666777776666654432 2111 11112222221 1123334455555555332 3321
Q ss_pred -HHHHH---HHHhccCc-HHHHHHHHHHchhhcCCCC-chHHHHHHH----HHHhhc---CC---HHHHHHHHHhCCCCC
Q 044872 336 -FVGLL---CGCTHAGL-VDEGRQFFNSMSRVFSLTP-MIEHYGCMV----DLLGRS---GQ---LDEAHELIKSMPMEP 399 (604)
Q Consensus 336 -~~~ll---~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~---~~~A~~~~~~~~~~p 399 (604)
...++ .-+-+.|. -++|..+++.+.+ +.| |.+.-|.+. ..|..+ .. +-+-..++++.++.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 11122 12333444 6777777777763 333 333322221 222221 11 222334455556555
Q ss_pred ----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 ----NAIVWGALLAG--CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ----~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...-|.|..| +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|..++..+..
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 33456667666 5789999999988888889999 889999999999999999999999997653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.16 Score=41.16 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=87.5
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
.-.|..++..++..+...+. +..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34677888888888876632 44556666654444555555666666665443332 24555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 389 HELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
..-+-.++ .+......-+.....+|+-++-.+++..+...+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55444443 234455666778889999999999999988655557889999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.61 Score=45.21 Aligned_cols=302 Identities=15% Similarity=0.113 Sum_probs=176.7
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh--cCCChHHHHHHHHH
Q 044872 81 LADALKVFDDIPDKNVVSWTAIISGYIN--EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACT--QLGDLSTAKWIHGY 156 (604)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~ 156 (604)
...+.+.|..-. --.-|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..++.+-. -.|+.+.|++-|+.
T Consensus 69 P~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 334445554322 22346666555554 46777777766554432 4456666777776553 46899999999999
Q ss_pred HHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCC
Q 044872 157 VNEAGKGRNVFV--ATSLVDLYAKCGNMEKARRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRE-NLKP 230 (604)
Q Consensus 157 ~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p 230 (604)
|.. .|.... ...|.----+.|..+.|+..-+..-. | -...|.+.+...+..|+|+.|+++++.-+.. -+.+
T Consensus 146 Ml~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 146 MLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred Hhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 876 222221 22233333567888888777666543 2 2357888999999999999999999877653 3455
Q ss_pred CHHH--HHHHHHHHHc---cCchHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH
Q 044872 231 EYYT--MVGVLSACAS---LGALELGVWASSFMERNEFLSNPVL-GTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAV 304 (604)
Q Consensus 231 ~~~t--~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 304 (604)
|..- -..++.+-+. ..+...++..-.+..+ +.||..- .-.-...|.+.|++.++-.+++.+-+.++..--..
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 5432 2233333221 1244455554444444 3333221 12234567888888888888888865333222222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh-
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEK-CGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR- 381 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 381 (604)
+-.+.+.|+ .++.-+++... ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.=..
T Consensus 301 lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAe 375 (531)
T COG3898 301 LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhc
Confidence 223334443 44444444432 1256654 466666677777788877777666555 456777777766665543
Q ss_pred cCCHHHHHHHHHhC
Q 044872 382 SGQLDEAHELIKSM 395 (604)
Q Consensus 382 ~g~~~~A~~~~~~~ 395 (604)
.|+-.++...+.+.
T Consensus 376 tGDqg~vR~wlAqa 389 (531)
T COG3898 376 TGDQGKVRQWLAQA 389 (531)
T ss_pred cCchHHHHHHHHHH
Confidence 37777777777665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.1 Score=53.40 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044872 214 KEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREM 293 (604)
Q Consensus 214 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 293 (604)
-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.. .|.+ |..+.+|.....++.|.++...-
T Consensus 617 L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 3444556778888887886543 3456677788887777643 3333 23444555555555555554332
Q ss_pred CC--------------CCcccHHHHHHHHHhCCCHHHHHHHHHH------HHHCCCC---CCHHHHHHHHHHHhccCcHH
Q 044872 294 KD--------------KDQVVWNAVVSGLSMNGYVKVAFGVFGQ------LEKCGIQ---PNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 294 ~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~ll~a~~~~g~~~ 350 (604)
.. +|+.-=.+....+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 21 1222122333444556666666554321 1121111 23345555555566667777
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP-MEPNAI 402 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 402 (604)
.|-++|..|-. ..+++++....+++.+|..+-++.| ..||+.
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 88888887753 2467888889999999999998884 445543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.29 Score=42.26 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---IQPNGNTFVG 338 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ 338 (604)
++..--.|.......|+..+|...|++... .|....-.+..+....+++.+|...++++.+.. -.|| +...
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHH
Confidence 333333444444455555555555544332 233333334444444555555555555554422 1222 2333
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
+.+.+.-.|.+.+|+..|+.... .-|+...-......+.++|+.++|..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 44555556666666666666553 234444333344555666666555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0032 Score=40.92 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
.+|..+...+...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999988877764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.64 Score=45.09 Aligned_cols=242 Identities=17% Similarity=0.128 Sum_probs=152.0
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044872 209 SNGFPKEALDMFYNMQRENLKPEY--YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQA 286 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (604)
-.|++++|.+-|+.|... |.. .-+..+.-...+.|+.+.+.++-+..-..-.. -.....+++...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 356777777777777542 211 11223333335667777777666655443211 245667778888888888888
Q ss_pred HHHHHhcCC-----CCcc--cHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHH
Q 044872 287 CKVFREMKD-----KDQV--VWNAVVSGLSM---NGYVKVAFGVFGQLEKCGIQPNGNTF-VGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 287 ~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~ 355 (604)
+++.+.-.. +|+. .-..|+.+-+. .-+...|...-.+..+ +.||.+.- .....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 888876543 3332 12223322211 2345556665555555 77876533 3345678999999999999
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
++.+-+ ..|.+..+... .+.|.|+. +..-+++. .++|| ..+...+..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 998874 35665544332 34455553 22222222 34555 446667778888999999999999999999
Q ss_pred CCCCchhHHHHHHHHH-hcCChHHHHHHHHHHhhC
Q 044872 431 EPWNSGNYVLLSNIYS-ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 464 (604)
.|.. ..|..|+++-. ..|+-.+++..+.+....
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9954 68889999875 559999998888877653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.08 Score=48.17 Aligned_cols=236 Identities=13% Similarity=0.049 Sum_probs=139.5
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH-hcCCC-hHH-HHHHHHHHHHhCCCCChhHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTAC-TQLGD-LST-AKWIHGYVNEAGKGRNVFVATSL 172 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~-~~~-a~~~~~~~~~~g~~~~~~~~~~l 172 (604)
...|+.-+..+++....++|..-+..+.+.+ .||-+ |...=..+ .+.|. ..- .+-+|.++.+.- ..-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHHH
Confidence 3456666677777777777766555554332 11110 00000000 12222 111 223344444321 1225566
Q ss_pred HHHHHhcCCHHHHHHHHccCCC--CCc--------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044872 173 VDLYAKCGNMEKARRVFDQMPE--KDI--------VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSAC 242 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (604)
...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++...+-+......+.+..
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 6666655555555555544322 222 234566777777788888888898888866556777777888888
Q ss_pred HccCchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCH
Q 044872 243 ASLGALELGVWASSFMERNE-----FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 314 (604)
.+.|+.+.+...++.+.+.. +.-+..+.......|.-.+++..|...|.+++.. |+..-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 88999999999998776643 3333334444445566778888899999887754 445555544445556888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 315 KVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 315 ~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
.+|++..+.|.. ..|...+-.++
T Consensus 303 ~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 303 KDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHhc--cCCccchhhhH
Confidence 899999999988 45655544433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0057 Score=45.00 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=51.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
..|.+.+++++|.+.++.+ ...|+ ...|......+...|+++.|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677889999999999888 55554 4477778888899999999999999999999987654433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=51.46 Aligned_cols=97 Identities=14% Similarity=0.296 Sum_probs=71.3
Q ss_pred HHHHHhc--CCCCcccHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 044872 287 CKVFREM--KDKDQVVWNAVVSGLSM-----NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA------------- 346 (604)
Q Consensus 287 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 346 (604)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34566677777777664 467777788888999999999999999999887652
Q ss_pred ---CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC
Q 044872 347 ---GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 347 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 384 (604)
.+.+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234567788888875 4888888888888888877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.1 Score=48.77 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=95.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcc---c---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHh
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQV---V---WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCT 344 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~---~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 344 (604)
....+.+.|++++|.+.|+.+....+. . .-.++.+|.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 344455677777777777777643221 1 123445666777777777777777763 3322 23333333322
Q ss_pred c--c---------------Cc---HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 044872 345 H--A---------------GL---VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVW 404 (604)
Q Consensus 345 ~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 404 (604)
. . .+ ..+|...|+.+++. |-...-..+|...+..+...--...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-
Confidence 1 0 01 12233334444332 2222223333333322210000000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
-.+..-|.+.|.+.-|..-++.+++.-|+. ..+...+..+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 123344778899999999999999877765 4577788999999999999999887664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.064 Score=43.61 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 044872 203 MIQGYASNGFPKEALDMFYNMQRENLKPE--YYTMVGVLSACASLGALELGVWASSFMERNEFL--SNPVLGTTLIDMYA 278 (604)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 278 (604)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677788888888887777765544 223444555666666666666666666543211 01122222223444
Q ss_pred hcCCHHHHHHHHHhc
Q 044872 279 KCGRMAQACKVFREM 293 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~ 293 (604)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666655555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.072 Score=48.45 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC--CCc--------ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPD--KNV--------VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRV 137 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 137 (604)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555444444444444443222 122 23345566666667777888888888887666677777778
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHh
Q 044872 138 LTACTQLGDLSTAKWIHGYVNEAG-----KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYAS 209 (604)
Q Consensus 138 l~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 209 (604)
.+...+.||.+.|...++...+.. ..-+..+.......|.-.+++..|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888888888888888776543 233333444444556667788888888887765 344455544444445
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 210 NGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
.|+..+|++..+.|... .|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 67788888888888764 34444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.63 Score=43.54 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=25.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCchHHHHHHHHHHHH
Q 044872 203 MIQGYASNGFPKEALDMFYNMQRENLKPEYYT--MVGVLSACASLGALELGVWASSFMER 260 (604)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 260 (604)
....+.+.|++++|.+.|+++...-..+.... ...+..++.+.++++.|...++..++
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444555566666666665555321111110 11223344444555555555544444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.56 Score=48.36 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=107.4
Q ss_pred HHHHHHHHHccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 044872 33 FPFVLKACAREHDFQLGVRS--HSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEG 110 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 110 (604)
++..=++|.+.++..--+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554432222 334555665566543 33455667888888888854 45
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
....|+++|..|+-- -..+-+...|+.++-+.+.+.-.+. ..++.--.+-..++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 555666666665431 1122333444444444433322111 001111123344555566666665543
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 191 QMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
..+|-.+-++++-+++-. .+..+...+..-+-+...+..|.++|..+-+.
T Consensus 727 -----------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 222222333333222211 12333434444444555566666666655332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHH
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
..++++....+++++|.++-++.++--...|-.-..-++...++++|.+
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 3566777777888888888777776322233333333344444444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.049 Score=51.42 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM----PMEP-NAIVWGALL 408 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll 408 (604)
.|...+......|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ |..| ....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444557777777777777754322111 234555667777888888888888776 2222 233555566
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677789999999999999999999764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.44 Score=46.94 Aligned_cols=157 Identities=14% Similarity=0.060 Sum_probs=86.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---Cc----ccHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044872 276 MYAKCGRMAQACKVFREMKDK---DQ----VVWNAVVSGLSM---NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 345 (604)
.|-...+++...++++.+... ++ ..--...-++.+ .|+.++|++++..+....-.++..|+..+...|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 355555666666666655542 11 111112223344 66777777777775555555666666655554422
Q ss_pred ---------cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHH----HHHHHH---Hh-C----CC--CCCHH
Q 044872 346 ---------AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLD----EAHELI---KS-M----PM--EPNAI 402 (604)
Q Consensus 346 ---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~----~~--~p~~~ 402 (604)
....++|...|.+.- .+.|+..+--.++.++...|... +..++- .. . .. ..|--
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 223566666666443 44565543333333444444322 122222 11 1 11 23444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.+.+++.++.-.|+.+.|.+.++++..+.|+.-
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 667889999999999999999999999887653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.44 Score=49.53 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=79.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 044872 274 IDMYAKCGRMAQACKVFREMKDK-----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL 348 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 348 (604)
|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-.. ....+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 44555556665555555442211 123555555555555555555555543211 0123334444444
Q ss_pred HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 349 VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+++-+.+-..+. -+....-.+.+++.+.|.-++|.+.+-+-+.+ .+-+..|...+++.+|.++.++..
T Consensus 838 f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 838 FGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred hhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444333333222 23333444556666666666666655554321 122334444555555544443311
Q ss_pred --ccCC----------CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 429 --ALEP----------WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 429 --~~~p----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+.+. .+ ....--+..+.++|+.-+|.+++.+|.++.
T Consensus 906 l~qv~tliak~aaqll~~-~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 906 LPQVQTLIAKQAAQLLAD-ANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred chhHHHHHHHHHHHHHhh-cchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 0000 00 011223456677777777777777776543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.021 Score=50.72 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----------------CCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ----------------LGDLSTAKWIHGYVNEAGKGRNVFVATSLV 173 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (604)
|..+=....+..|.+-|+.-|..+|+.||..+=+ ..+-+.|..++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3333334444555555555555555555544322 123455677777777777777777777777
Q ss_pred HHHHhcC
Q 044872 174 DLYAKCG 180 (604)
Q Consensus 174 ~~y~~~g 180 (604)
+.+++.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 7776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.1 Score=44.37 Aligned_cols=381 Identities=12% Similarity=0.074 Sum_probs=192.7
Q ss_pred hhcCCchHHHHHHHHHHhC--CCCC------------CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCC----CChhH
Q 044872 6 VSNDCFQHAIEFYNSMRNE--GFLP------------TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLD----CDEFV 67 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 67 (604)
-+.+.++.|++.|....+. +..| |-..=+..+.++...|++.+|+.++++++..=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3677888999988887665 3222 1111223456677889999999999888765433 68888
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC--C
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQL--G 145 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g 145 (604)
|+.++-+++++=-++. -+.+...=..-|-.+|-.|.+.=+ .++.-.-..+.|....+..++....-. .
T Consensus 170 yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred HHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 8888878776532221 112221111224445555543211 111100011233333333333332221 1
Q ss_pred ChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHccCC--------CCCcchHHHHHHHHHhCCCchHH
Q 044872 146 DLSTAKWIHGYVNEAGKGRNV-FVATSLVDLYAKCGNMEKARRVFDQMP--------EKDIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A 216 (604)
.+.--.+++..-...-+.|+- .+...|+.-+.+ +.+++..+-+.+. +.=+.++..++...++.++..+|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 222233444444444344442 233344444444 3333333333221 12345677788888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-------HHHHHH-c---cCchHHHHHHHHHHHHcCCCCchhHHHHH---HHHHHhcCC
Q 044872 217 LDMFYNMQRENLKPEYYTMVG-------VLSACA-S---LGALELGVWASSFMERNEFLSNPVLGTTL---IDMYAKCGR 282 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~-------ll~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~ 282 (604)
-+.+.-+.- +.|+...-.. +-+..+ . ..++..-..+++.+...++.... ...-| ..-+.+.|.
T Consensus 318 ~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 318 KQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCC
Confidence 887766544 3343321111 111111 1 11222223344444444333211 11112 222444555
Q ss_pred -HHHHHHHHHhcCC---CCcccHHHHHH----HHHh---CCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHH--HHhc
Q 044872 283 -MAQACKVFREMKD---KDQVVWNAVVS----GLSM---NGYVKVAFGVFGQLEKCGIQPNGN----TFVGLLC--GCTH 345 (604)
Q Consensus 283 -~~~A~~~~~~~~~---~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~--a~~~ 345 (604)
-++|..+++.+.+ -|..+-|.... .|.+ ...+.+-+.+-+-..+.|++|-.+ .-+.+.. .+..
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6777777777654 34444333221 2322 122333344444445667776332 2233332 2445
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGA 406 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 406 (604)
.|++.++.-+-..+. .+.|++.+|..+.-.+....++++|.+++..+| |+..+|++
T Consensus 475 qgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 778887776666555 567888888888777778888888888888876 46666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.06 Score=52.34 Aligned_cols=63 Identities=16% Similarity=-0.037 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++..|...+.+.+++..|++...+.++++|+|.-+.+.-+.+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456667777889999999999999999999999999999999999999999999999999873
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0079 Score=44.96 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIAL----EPW---NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777888888888888888887743 222 245677889999999999999999887754
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.21 Score=45.41 Aligned_cols=141 Identities=15% Similarity=0.112 Sum_probs=72.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQ-P-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR 381 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 381 (604)
....+.+.|++.+|.+.|+++...-.. | -......+..++.+.|+++.|...++...+.+.-.|... +...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 344455667777777777777653211 1 113444555666667777777777776665544444321 1111111111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch-----------------hHHHHHHH
Q 044872 382 SGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG-----------------NYVLLSNI 444 (604)
Q Consensus 382 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 444 (604)
........ ......+....|...|+.+++..|+++. .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0012233455667777777777776542 22237888
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|.+.|++..|..-++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999874
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.28 Score=47.71 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=130.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHH--h--CC-CCChhHHHHHHH
Q 044872 104 SGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGYVNE--A--GK-GRNVFVATSLVD 174 (604)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~--~--g~-~~~~~~~~~li~ 174 (604)
.-+++.|+....+.+|+..++.|-. |.. .|..+..+|.-.+|+++|.++|..=+. . |- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3467788888888888888877643 433 355566677777888888887653221 1 10 001112223444
Q ss_pred HHHhcCCHHHHHHHHccCC-------C--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044872 175 LYAKCGNMEKARRVFDQMP-------E--KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASL 245 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (604)
.+--.|.+++|.-...+-. . ....++..+...|...|+.-.-. .-.+.|-.|+.++-
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~~---------- 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVTS---------- 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHHH----------
Confidence 4445566666654322211 1 01223444555555544321000 00001111211110
Q ss_pred CchHHHHHHHHH----HHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CC--CcccHHHHHHHHHhC
Q 044872 246 GALELGVWASSF----MERNEFL-SNPVLGTTLIDMYAKCGRMAQACKVFREMK-------DK--DQVVWNAVVSGLSMN 311 (604)
Q Consensus 246 ~~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~ 311 (604)
.++.|.++|.. +.+.|-. .--..|..|.+.|.-.|+++.|...-+.-. ++ .-..+..+..++.-.
T Consensus 170 -al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 170 -ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01111111111 1111100 012234445555555566665554332111 00 123455566667777
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhh---c-CCCCchHHHHHHHHHHhhc
Q 044872 312 GYVKVAFGVFGQLEK----CGI-QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRV---F-SLTPMIEHYGCMVDLLGRS 382 (604)
Q Consensus 312 g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~-~~~p~~~~~~~li~~~~~~ 382 (604)
|+++.|.+.|+.-.. .|- .....+..+|.+.|.-...++.|+.+|..-..- . ...-....+.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 777777777765432 221 123345556777777777888888887743310 0 1112234455666666666
Q ss_pred CCHHHHHHHHHh
Q 044872 383 GQLDEAHELIKS 394 (604)
Q Consensus 383 g~~~~A~~~~~~ 394 (604)
|..++|+.+.+.
T Consensus 329 g~h~kAl~fae~ 340 (639)
T KOG1130|consen 329 GEHRKALYFAEL 340 (639)
T ss_pred hhHHHHHHHHHH
Confidence 666666665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.34 Score=47.25 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=90.2
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcc-cHHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH---H----------
Q 044872 277 YAKCGRMAQACKVFREMKDKDQV-VWNAVVS--GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL---L---------- 340 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l---------- 340 (604)
+.-.|+.++|...-..+.+-|.. .+...+. ++--.++.+.|...|++.+. ..|+...-... .
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh
Confidence 33445555555554444433322 1222222 22335566677777777666 44554332221 1
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH--HHH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-----IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLA--GCR 412 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~--~~~ 412 (604)
+-..+.|++..|.+.|...+ ++.|+ ...|.....+..+.|++++|+.--+.. .+.| ..++.-+.+ ++.
T Consensus 257 N~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l 332 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHL 332 (486)
T ss_pred hhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHH
Confidence 12345788999999998876 45554 455666667788899999999887776 4432 223333333 356
Q ss_pred hcCChHHHHHHHHHHHccCCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~ 433 (604)
..++++.|.+-++++.+...+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 778999999999999876643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.1 Score=49.83 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=92.8
Q ss_pred CCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 044872 180 GNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFME 259 (604)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 259 (604)
++++.|+.-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45666666655554 233444444445666677776664 57777776666655421 11
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHH
Q 044872 260 RNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN--TFV 337 (604)
Q Consensus 260 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~ 337 (604)
+.. .++-..-+|.++|+.++|.+.| ...|++.+|+.+..+|.. .-|.. +-.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 111 1122334688888888887654 456788888887777632 11222 224
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP 396 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 396 (604)
.|..-+...+++-+|-++......+ | .--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5566667777777777776655432 2 234566777778888887766653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.014 Score=43.51 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-------P-MEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+++.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555443 1 1122 33666677777777777777777777654
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.043 Score=46.93 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++|+.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999999999999999999999999999998864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.11 Score=42.61 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 044872 364 SLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPNAIVWGALLAG 410 (604)
Q Consensus 364 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~ 410 (604)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455555555555555555555555555443 333334455555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.11 Score=41.95 Aligned_cols=90 Identities=21% Similarity=0.193 Sum_probs=73.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCC---chhHHHHHHHHHhcCC
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALE-PWN---SGNYVLLSNIYSASHK 450 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 450 (604)
-+++..|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|..-+++++++. |.. -.+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999999876 3333 66789999999999999999999999999865 332 2467788889999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
-+.|+.=|...-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=3.7 Score=43.57 Aligned_cols=328 Identities=13% Similarity=0.088 Sum_probs=176.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGD---LSTAKWIHGYVNEAGKGRNVFVATSLVDL 175 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (604)
-..+|.-+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+.+..+-+++... . .+...|..+..-
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 4456777788888888888877764321221 4555555555554432 22223333222221 2 344567777777
Q ss_pred HHhcCCHHHHHHHHccCCCC--------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 044872 176 YAKCGNMEKARRVFDQMPEK--------DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGA 247 (604)
Q Consensus 176 y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (604)
...+|+.+-|.++++.=+.. +..-+..-+.-..+.|+.+-...++..|.++- +...|... ..+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHh
Confidence 77889999999888764431 11223344444555666666655555554321 11111111 112
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH--hcC-----CCCcccHHHHHHHHHhCCC---HHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFR--EMK-----DKDQVVWNAVVSGLSMNGY---VKVA 317 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~---~~~A 317 (604)
...|..++.+..+..-. ..|-+.|-...+.. +...|. ... +.-..........+++... ..+|
T Consensus 588 ~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred chhhhHHHHHHHHhhch------hhhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 23344444444332111 11222222222222 222111 100 1111112222333333322 1111
Q ss_pred -------HHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 318 -------FGVFGQLEK-CGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 318 -------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
+++.+.+.. .|..-...|.+--+.-+...|.-.+|.++-.+.+ .||-..|-.-+.+++..+++++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 222233322 2333334455555666677888888888776554 577778888888999999999888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 390 ELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 390 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
++-+... .+.-|.-+..+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.+.--+-
T Consensus 736 kfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 736 KFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 8877763 2455667788999999999998887664322 15678899999999988875433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=47.60 Aligned_cols=96 Identities=19% Similarity=0.043 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHccCCC---CCcchHHHH
Q 044872 130 DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG---NMEKARRVFDQMPE---KDIVSWSSM 203 (604)
Q Consensus 130 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~l 203 (604)
|...|..+..+|...|+.+.|...|....+.. ++++..+..+..++.... .-.++..+|+++.. .|+.+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 55566666666666666666666666666543 334444444444333221 23456666666644 234455556
Q ss_pred HHHHHhCCCchHHHHHHHHHHHC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 66677777777777777777664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.7 Score=39.42 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=22.0
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 386 (604)
..-|.+.|.+..|..-++.+.+.+.-.+. ......++..|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34455566666666666666554332222 123344445555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.9 Score=39.33 Aligned_cols=194 Identities=17% Similarity=0.114 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD-----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLC 341 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 341 (604)
..........+...+++..+...+..... .....+......+...+....+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555556666666777766666665432 2334455555566666667777777777766332221 11222222
Q ss_pred -HHhccCcHHHHHHHHHHchhhcCCCC----chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 044872 342 -GCTHAGLVDEGRQFFNSMSRVFSLTP----MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN--AIVWGALLAGCRL 413 (604)
Q Consensus 342 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 413 (604)
++...|+++.+...+..... ..| ....+......+...++.++|...+... ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777788888887777642 222 2333333444466777888888887776 33333 4567777777888
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888765556666666666677788888887777653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.25 Score=42.11 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch----hhcCCCCchHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMS----RVFSLTPMIEH 371 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 371 (604)
...++..+...|++++|+.+.+.+.. ..| |...+..++.++...|+..+|.++|+.+. +..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666677888888888888777 344 55677777888888888888887777553 24566776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2 Score=39.11 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcc----CCCCchhH
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSMP-------MEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIAL----EPWNSGNY 438 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~ 438 (604)
.|......|.+..++++|-..|.+-. .-|+.. .+.+.|-.+....++..|+..++.-.+. .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566777777777766655431 123332 3445555566667888888888876543 36666677
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 044872 439 VLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~ 459 (604)
..|+..| ..|+.+++.++..
T Consensus 232 enLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHHc
Confidence 7777766 5677777666544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.23 Score=48.51 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
++..+.-.|.+.+++.+|++.-+.. ... +|.-..-.=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4566777888999999999988877 444 45556666778899999999999999999999999988888888887776
Q ss_pred CChHHH-HHHHHHHhhC
Q 044872 449 HKWNDA-AKIRSMMGDK 464 (604)
Q Consensus 449 g~~~~A-~~~~~~m~~~ 464 (604)
.++.+. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 665554 7888888754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.38 Score=40.09 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=40.0
Q ss_pred HhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 379 LGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
..+.|++++|.+.|+.+ |..|- .-.--.|+.++.+.++++.|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44567777777777766 33332 234556777788888888888888888888877653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.19 Score=41.33 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 345 (604)
|..++.+++-++++.|+++....+++..-.-|+.. -...+. --......|+..+..+++.+|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 34567778888888888888888877654322211 000111 11223478999999999999999
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL 378 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 378 (604)
.+++..|.++.+...+.|+++-+..+|..|+.-
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999988888889888753
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.56 Score=39.08 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHccCCCCc
Q 044872 417 TDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~ 435 (604)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777888888888754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=2.5 Score=38.99 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=74.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhc
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKCGI-QP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRS 382 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 382 (604)
+..-.+.|++++|.+.|+.+..+-. .| ...+...++-++.+.+++++|....++..+.++-.|+.. |...+.++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3344456666666666666665321 11 234455555566666666666666666665555555543 222333332
Q ss_pred CCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch-----------------hHHHHHHH
Q 044872 383 GQLDEAHELIKSMP-MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG-----------------NYVLLSNI 444 (604)
Q Consensus 383 g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 444 (604)
.|..++ ...|. .-...|...++++++.-|++.- .=..+++.
T Consensus 118 --------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 00111 1133445555556666665431 22247788
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|.+.|.|..|..-++.|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999885
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.38 Score=48.19 Aligned_cols=64 Identities=8% Similarity=-0.054 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
|......+..+....++.+.|...|+++..++|+.+.++...+....-+|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444444444455555567777777777777776666666666666667777777766666544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.6 Score=36.83 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 044872 31 FTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEG 110 (604)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 110 (604)
.....++..+...+........++.+++.+ ..+....|.++..|++.. ..+....++. ..+......+++.|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 334567777776777888888888888776 357778888888888763 3444555552 233444555677777777
Q ss_pred ChhHHHHHHHHH
Q 044872 111 NLEEAINMFRRL 122 (604)
Q Consensus 111 ~~~~A~~~~~~m 122 (604)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 777777777665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=51.18 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 368 MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI----VWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|...+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777888888888888888775 5666643 4777888888888888888888888876
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=2 Score=43.20 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=104.6
Q ss_pred ccH--HHHHHHHHhC-----CCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCcHHHHHHHHHHch
Q 044872 299 VVW--NAVVSGLSMN-----GYVKVAFGVFGQLEK-CGIQPNGN-TFVGLLCGCTH---------AGLVDEGRQFFNSMS 360 (604)
Q Consensus 299 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 360 (604)
..| ...+.+.... ...+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5555554441 135578888998872 23667653 34333332221 234455666666665
Q ss_pred hhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 361 RVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 361 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.+.| |......+..++.-.|+++.|..+|++. ...||.. +|......+.-.|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 4555666667777788899999999998 6677654 77766777788999999999999999999986544
Q ss_pred HH--HHHHHHHhcCChHHHHHHHHHH
Q 044872 438 YV--LLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 438 ~~--~l~~~~~~~g~~~~A~~~~~~m 461 (604)
-. ..+++|... ..++|.+++-+-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 33 344466655 467777776543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.19 Score=46.48 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=48.8
Q ss_pred hcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---CchhHHHHHHHHHhcCC
Q 044872 381 RSGQLDEAHELIKSM-------PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW---NSGNYVLLSNIYSASHK 450 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 450 (604)
+.|++.+|..-|... ...||..-| |..++...|+++.|...|..+.+-.|+ -|.++.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 445566665555544 122333333 556666677777777777666654443 34566666777777777
Q ss_pred hHHHHHHHHHHhhC
Q 044872 451 WNDAAKIRSMMGDK 464 (604)
Q Consensus 451 ~~~A~~~~~~m~~~ 464 (604)
.++|..+++++.++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.86 E-value=5.7 Score=41.18 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=124.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
+...|+.-++.-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567788888888999999999999988754 2344555555555558888888777766553232222222222233
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCch-HHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMI-EHYGCMVDLLGRSGQLDEAH---ELIKSM-PMEPNAIVWGALLA-----GCR 412 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 412 (604)
+-..|+++.|..+++.+.+. . |+. ..-.--+....+.|..+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56688999999999999875 3 553 33334456778899999888 555554 22223333333222 245
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
..++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 66899999999999999999999999999988876663
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.31 Score=46.60 Aligned_cols=126 Identities=9% Similarity=0.052 Sum_probs=74.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCC--CC--chHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSL--TP--MIEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPNAIVW 404 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~ 404 (604)
..++..|+...+.++++.+.|+...+-..- +| ...++..|...|++..++++|.-+..+. ++..=..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334556666677777888777765532111 12 1346777777888888877766554433 222111122
Q ss_pred H-----HHHHHHHhcCChHHHHHHHHHHHcc--CCCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 405 G-----ALLAGCRLHKKTDLAEHVLNQLIAL--EPWNS----GNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 405 ~-----~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
. -|.-+++..|.+..|.+..++..++ ...|. .....++++|...|+.+.|..-++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2 2344677788888888877777543 22232 34446788888888877777666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.68 Score=47.38 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=91.2
Q ss_pred hcCCchHHHHHHH--HHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 044872 7 SNDCFQHAIEFYN--SMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADA 84 (604)
Q Consensus 7 ~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 84 (604)
-+|+++++.+... ++.. .+ +..-.+.++.-+-+.|-.+.|+++-. |+ ..-.+...++|+++.|
T Consensus 273 ~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHH
Confidence 3556666555443 1111 11 13336677777777777777776632 22 2234566688888888
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 044872 85 LKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR 164 (604)
Q Consensus 85 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 164 (604)
.++-++.. +...|..|.....++|+++-|.+.|.+... |..++-.+...|+.+.-.++.......|
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 88877665 566888888888888998888888887643 5556666777788777777777766655
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
-+|.-..++.-.|++++..+++.+
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 133444445555777766666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.53 E-value=2 Score=40.33 Aligned_cols=121 Identities=11% Similarity=0.081 Sum_probs=81.1
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGA---LLAGCRLHKKTD 418 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~~~~~ 418 (604)
.....|++.++...|...... .+-+......|...|...|+.++|..++..+|..-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677888888888777643 122345566677888889999999999998865543333333 222233333333
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 419 LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+... +++-...+|+|...-..++..|...|+.++|.+.+-.+..++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2222 233345689999999999999999999999999887776654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.31 Score=45.01 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=81.1
Q ss_pred HHHHHHHHhcC--CCCcccHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------
Q 044872 284 AQACKVFREMK--DKDQVVWNAVVSGLSMN-----GYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAG--------- 347 (604)
Q Consensus 284 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 347 (604)
-..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456777776 67888899988888654 567777778899999999999999999999876633
Q ss_pred -------cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCH
Q 044872 348 -------LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 348 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 385 (604)
.-+=++.++++|.. +|+-||-++-..|++++++.+-.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22447789999985 59999999999999999998864
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.082 Score=31.80 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35777777788888888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.20 E-value=3 Score=35.13 Aligned_cols=43 Identities=28% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
.++..+...+.......+++.+.+.+. .++..++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444445555566666666655542 4566677777777664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.15 E-value=4.5 Score=38.11 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=99.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC
Q 044872 306 SGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 306 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 384 (604)
......|++.+|..+|+..... .| +...-..+..++...|+.+.|..++..+.... -.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 3456788888899988888773 33 23455667778888999999999998776421 11111222334566666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCCchhHHHHHHHHHhcCChHH-HHHHHHH
Q 044872 385 LDEAHELIKSMPMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALE--PWNSGNYVLLSNIYSASHKWND-AAKIRSM 460 (604)
Q Consensus 385 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 460 (604)
..+..++-.+....| |...--.+...+...|+.+.|.+.+-.++..+ -+|...-..|..++.-.|.-+. +...+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 666666666664456 44555667777888899999888877777543 4456677777777777774443 3344444
Q ss_pred H
Q 044872 461 M 461 (604)
Q Consensus 461 m 461 (604)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.47 Score=43.95 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=52.6
Q ss_pred ccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~ 418 (604)
..|++..|.+.|...++.|.-.+ ....+--|...+...|++++|..+|..+ |..|- +..+--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34456666666655554321111 1122333556666666666666666555 33332 235555666667777888
Q ss_pred HHHHHHHHHHccCCCCchh
Q 044872 419 LAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~ 437 (604)
.|...|+++.+..|+.+.+
T Consensus 233 ~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 233 EACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHCCCCHHH
Confidence 8888888887777766433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.04 E-value=3.2 Score=42.04 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=69.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 044872 337 VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP-M-EPNA--IVWGALLAGCR 412 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~~~~ 412 (604)
..+..++-+.|..++|.+.|.++.+.+...........|+..|...+++.++..++.+.. + -|.. ..|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778899999999999998654333344566778899999999999999998873 2 2333 36666655555
Q ss_pred hcCCh---------------HHHHHHHHHHHccCCCCc
Q 044872 413 LHKKT---------------DLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 413 ~~~~~---------------~~a~~~~~~~~~~~p~~~ 435 (604)
..++. ..|.+++.++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44431 235678888888888654
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.14 Score=30.62 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.9 Score=43.42 Aligned_cols=158 Identities=12% Similarity=0.114 Sum_probs=101.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHchhhcCCCCchHHH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKCG-IQPNG-----NTFVGLLCGCT----HAGLVDEGRQFFNSMSRVFSLTPMIEHY 372 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 372 (604)
.+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444445566666666666654422 11111 12333333322 245778899999988865 4666555
Q ss_pred HHHH-HHHhhcCCHHHHHHHHHhCC-CC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH-HHHH
Q 044872 373 GCMV-DLLGRSGQLDEAHELIKSMP-ME---P--NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL-LSNI 444 (604)
Q Consensus 373 ~~li-~~~~~~g~~~~A~~~~~~~~-~~---p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 444 (604)
...- ..+...|++++|.+.|++.- .+ | ....+--+...+....++++|...+.++.+.+..+...|.. .+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4433 56677899999999999751 11 1 22334445566778899999999999999877766555554 4566
Q ss_pred HHhcCCh-------HHHHHHHHHHhh
Q 044872 445 YSASHKW-------NDAAKIRSMMGD 463 (604)
Q Consensus 445 ~~~~g~~-------~~A~~~~~~m~~ 463 (604)
+...|+. ++|.+++.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6788888 888888887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.9 Score=37.37 Aligned_cols=161 Identities=14% Similarity=0.151 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+-|...-+.-.-+|-...|-.+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-- 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-- 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH--
Confidence 4566666666667777777777777666 33422 222222223445566666665544433221222222222211
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------chhHHHHHHHHHhcCC
Q 044872 378 LLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-------SGNYVLLSNIYSASHK 450 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 450 (604)
-.+.-++.+|..-+.+--...|..-|..-|-.+.--.-.+ +.+++++.+...++ ..+|.-|+.-|...|+
T Consensus 176 -~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 176 -NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1233355555543332211234455655554433221111 23344444322222 3688999999999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
.++|..+|+.....++
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999887544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.94 E-value=11 Score=40.74 Aligned_cols=52 Identities=8% Similarity=0.115 Sum_probs=31.3
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 376 VDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+..+....+.+.+..+.+..+.. ++..|-.++..+.+.+..+.-.+...+++
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 33445556666666666666422 66677777777777776555555555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.90 E-value=4 Score=40.42 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCC---Cc----chHHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPEK---DI----VSWSSMIQGYAS---NGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
.|+-.|-...+++...++.+.+... ++ ..---..-++-+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455678888888888888887652 11 111123345555 7888888888888666555667777766555
Q ss_pred HH
Q 044872 241 AC 242 (604)
Q Consensus 241 ~~ 242 (604)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.80 E-value=7.9 Score=38.64 Aligned_cols=127 Identities=10% Similarity=0.085 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcC-CCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFS-LTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVW-GALLAGC 411 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~ 411 (604)
.|...+++..+..-++.|+.+|-++.+. + +.+++..+++++.-++ .|+..-|..+|+-- ..-||...| +-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555666667777788888888888765 5 5677888888887554 57777788888754 333555433 4455556
Q ss_pred HhcCChHHHHHHHHHHHccCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 412 RLHKKTDLAEHVLNQLIALEP--WNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
...++-+.|..+|+..++.-. .-...|..+++--+.-|+...|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677888888888886553211 1234677777777777777777766666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.46 Score=43.88 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=60.1
Q ss_pred HHHHHhccCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC----------
Q 044872 83 DALKVFDDIP--DKNVVSWTAIISGYINE-----GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLG---------- 145 (604)
Q Consensus 83 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 145 (604)
..++.|...+ ++|-.+|-+.+..+... +..+=--..++.|.+.|+.-|..+|..+|..+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 46777777777776543 445555556777888888888888888887654321
Q ss_pred ------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 146 ------DLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180 (604)
Q Consensus 146 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (604)
+-+-+..++++|...|+-||-.+-..|++++++.+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12234555555555565555555555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.79 E-value=5.1 Score=36.38 Aligned_cols=193 Identities=15% Similarity=0.072 Sum_probs=118.2
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Cc-ccHHHHHH-HHHhC
Q 044872 237 GVLSACASLGALELGVWASSFMERN-EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK--DQ-VVWNAVVS-GLSMN 311 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~-~~~~~ 311 (604)
.....+...+.+..+...+...... ........+..+...+...++...+...+...... +. ..+..... .+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc
Confidence 3333444444444444444333321 12223334444455555556666666666665542 11 22222333 67788
Q ss_pred CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHH
Q 044872 312 GYVKVAFGVFGQLEKCGIQP----NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 312 g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 386 (604)
|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...++++
T Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 144 GDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred CCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHH
Confidence 888888888888855 333 2234444444466778888998888888742 222 3566777778888888999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 387 EAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 387 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
+|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999988877 44454 445555555555777899999999999988885
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.66 E-value=3.2 Score=42.59 Aligned_cols=155 Identities=16% Similarity=0.149 Sum_probs=83.7
Q ss_pred HHhCCChhHHHHHHH--HHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 044872 106 YINEGNLEEAINMFR--RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNME 183 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 183 (604)
..-.++++++.++.+ ++.. .+ | ..-...+++.+-+.|-.+.|.++-. |+. .-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 344566666655554 1111 11 1 3335566666666676666666543 221 2344557778888
Q ss_pred HHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC
Q 044872 184 KARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEF 263 (604)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (604)
.|.++-++.. +...|..|.....++|+.+-|.+.|++... +..++-.+...|+.+.-.++.......|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8888776655 455788888888888888888887776532 44455556666666666666655555441
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
+|....++.-.|+.++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333444455666666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.3 Score=40.53 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=81.2
Q ss_pred hcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHH--HHHHHHhccCcHHH
Q 044872 279 KCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG--NTFV--GLLCGCTHAGLVDE 351 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~--~ll~a~~~~g~~~~ 351 (604)
..|+..+|-..++++.+ .|..+|+--=.+|.-.|+.+.-...+++.... ..||. .+|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666666666666654 35666666666777777777766666666542 12332 2222 22234455677777
Q ss_pred HHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHH
Q 044872 352 GRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN-------AIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
|++.-++..+ +.| |.-.-.++...+.-.|+..++.+++.+-...-+ ..-|..- -.+...+.++.|+++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 7766665552 233 333444555666667777777777766521111 0111111 123344677777777
Q ss_pred HHHHH--ccCCCCc
Q 044872 424 LNQLI--ALEPWNS 435 (604)
Q Consensus 424 ~~~~~--~~~p~~~ 435 (604)
|++-+ +++.+|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 76533 3444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.3 Score=41.92 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHE 390 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 390 (604)
..+...-+++-++..+ +.||-.+.-.++ +-.....+.++.++|++..+. + ...+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hhh
Confidence 3344455555555555 556654433333 223345577777777766542 1 0000000 00000111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 044872 391 LIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW--NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQK 468 (604)
Q Consensus 391 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 468 (604)
.+..-...|-..+=..|...+++.|+.++|.+.++++++..|. +......|++.+...+.+.++..++.+-.+....+
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111111222333345666677888888888888888876654 34567778888888888888888888765443433
Q ss_pred C
Q 044872 469 I 469 (604)
Q Consensus 469 ~ 469 (604)
.
T Consensus 329 S 329 (539)
T PF04184_consen 329 S 329 (539)
T ss_pred h
Confidence 3
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.21 E-value=6.9 Score=36.16 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=106.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cc---cHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCH--HH
Q 044872 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD---QV---VWNAVVSGLSMNGYVKVAFGVFGQLEKC-GIQPNG--NT 335 (604)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t 335 (604)
|-...|+.-+. -.+.|++++|.+.|+.+..+. +. +--.++-++-+.+++++|+..+++.... +-.||. ..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33445554443 456899999999999998642 22 2333455777899999999999998874 233333 34
Q ss_pred HHHHHHHHhcc----CcHH---HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HH
Q 044872 336 FVGLLCGCTHA----GLVD---EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVW--GA 406 (604)
Q Consensus 336 ~~~ll~a~~~~----g~~~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ 406 (604)
|...+.-+... .+.. +|..-|+.++.++ |+.. -..+|..-+..+. |.... ..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHH
Confidence 44444433221 2222 3333333334332 2211 1111111111110 11111 13
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNS---GNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+..-|.+.|.+..|..-++.+++.-|+.+ .++..+..+|...|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 44557899999999999999998766544 46667888899999999999988777553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.5 Score=45.54 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC-CCc---------ccHHHHHHHHHh----CCC
Q 044872 46 FQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD-KNV---------VSWTAIISGYIN----EGN 111 (604)
Q Consensus 46 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~---------~~~~~li~~~~~----~g~ 111 (604)
+..+.-+|..++.. ++| ....+++..+=.|+-+.+++.+....+ .++ ..|+.++..+.- ...
T Consensus 173 v~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 34455666666654 333 234556666666777777777765433 222 235555554443 345
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHH-HHHhcCCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCHHHHHH
Q 044872 112 LEEAINMFRRLLHRGLKPDSFSIVRVL-TACTQLGDLSTAKWIHGYVNEAG---KGRNVFVATSLVDLYAKCGNMEKARR 187 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~~ 187 (604)
.+.|.+++..+... -|+...|...- +.+...|+++.|.+.++.+.... .+.....+--+.-.+.-..++++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 67889999998875 56766554333 45577899999999998765321 12233445557778889999999999
Q ss_pred HHccCCCCCcc---hHHHH-HHHHHhCCCc-------hHHHHHHHHHHH
Q 044872 188 VFDQMPEKDIV---SWSSM-IQGYASNGFP-------KEALDMFYNMQR 225 (604)
Q Consensus 188 ~~~~~~~~~~~---~~~~l-i~~~~~~g~~-------~~A~~~~~~m~~ 225 (604)
.|..+.+.+.. .|.-+ ..++...|+. ++|.++|.+...
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999874432 23322 3445566777 888888888654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.9 Score=36.83 Aligned_cols=86 Identities=13% Similarity=0.001 Sum_probs=41.8
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC----CCcc---cHHHHHHHHHhCCCh
Q 044872 40 CAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD----KNVV---SWTAIISGYINEGNL 112 (604)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~---~~~~li~~~~~~g~~ 112 (604)
++..|+++.|.+.|.+.+..- +...++||.-...|.-.|+.++|+.=+++..+ +... +|.--...|-..|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555555555555555432 23445555555555555555555554444322 1111 122222334455666
Q ss_pred hHHHHHHHHHHHCC
Q 044872 113 EEAINMFRRLLHRG 126 (604)
Q Consensus 113 ~~A~~~~~~m~~~g 126 (604)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.5 Score=41.38 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=68.2
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 378 LLGRSGQLDEAHELIKSM----PMEP---NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
-+.+.|++++|..-|... |..+ ..+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777776655 2111 233455555667889999999999999999999888888888899999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
+++|.+=++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.11 E-value=4.4 Score=35.05 Aligned_cols=136 Identities=16% Similarity=0.192 Sum_probs=86.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHhccCCC
Q 044872 15 IEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDE-FVKTSLLNLYVHCGYLADALKVFDDIPD 93 (604)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~ 93 (604)
++....+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+|. .+...|++.- +....+.++=-.|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHH
Confidence 4566667778899999999999999999998754444 4455544444 4444444332 222333333333333
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG 161 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 161 (604)
+=...+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...--.++....+.+
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22235778888999999999999998875322 22334556777777777777666666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.28 Score=30.02 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778899999999999999988854
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.77 Score=39.25 Aligned_cols=84 Identities=5% Similarity=-0.098 Sum_probs=61.4
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHH
Q 044872 40 CAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDI---PDKNVVSWTAIISGYINEGNLEEAI 116 (604)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 116 (604)
+...|++++|..+|..+...++. +..-+..|...+-..+++++|...|... ...|....--....|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 44678888888888888776533 4555677777777788888888887642 2345555666677888888888888
Q ss_pred HHHHHHHH
Q 044872 117 NMFRRLLH 124 (604)
Q Consensus 117 ~~~~~m~~ 124 (604)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88888776
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.63 E-value=6.6 Score=33.54 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=52.4
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCchH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPMIE-HYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~ 418 (604)
..-...++.+++..++..+. -+.|... .-..-...+.+.|++.+|..+|+++ .-.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33445667777777777776 4455532 2223345567888888888888888 33355555566666665444333
Q ss_pred HHHHHHHHHHccCC
Q 044872 419 LAEHVLNQLIALEP 432 (604)
Q Consensus 419 ~a~~~~~~~~~~~p 432 (604)
.=....+++++..+
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 33344444555444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.42 E-value=24 Score=38.24 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQL 144 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 144 (604)
..--++|-.+.|.|++++|.++....... .......|...+..+...
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 33345667777888888888877554432 344555677777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.39 E-value=16 Score=36.26 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=75.0
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc--hHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP---NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM--IEH 371 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 371 (604)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567778888888888888888888877643211 2223333344455667777887777766642 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHEL-IKSMPMEPNAIVWGALLAGCRLH------KKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111000000 00000000 00000000011222222223333 788889999999999999887777777766
Q ss_pred HH
Q 044872 445 YS 446 (604)
Q Consensus 445 ~~ 446 (604)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 64
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=25 Score=38.28 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHH
Q 044872 311 NGYVKVAFGVFGQLEKC-GIQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 387 (604)
..+.+.|..++.+.... +..+... ....+.......+...++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34457777777776443 2333322 2223322222222244555555554321 1233333333444447778887
Q ss_pred HHHHHHhCCCC-CCHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 044872 388 AHELIKSMPME-PNAIVW-GALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 388 A~~~~~~~~~~-p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+...+..|+.. .+..-| -=+..+....|+.+.|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777321 111122 223445555788888888877764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.19 E-value=15 Score=35.32 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHccCCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 044872 167 FVATSLVDLYAKCGNME---KARRVFDQMPE--KD-IVSWSSMIQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
.+...|+.+|...+..+ +|.++.+.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 45666777777766544 34444444432 33 334444455555577777777777777765
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.4 Score=40.42 Aligned_cols=159 Identities=11% Similarity=-0.053 Sum_probs=115.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH----HHHhhcCCH
Q 044872 310 MNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV----DLLGRSGQL 385 (604)
Q Consensus 310 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~ 385 (604)
-+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++.+.. ...|+...|..+= -++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999998874 445667777777899999999999999998885 3456665554443 345589999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CchhHHHHHHHHHhcCChHHHHHHHH
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW----NSGNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
++|++.-++. .++| |.-.-.++...+...|+..++.+...+-...=.. -...|-..+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 6665 4445666777778889999888877654321111 12455567777888899999999999
Q ss_pred HHhhCCCccCCc
Q 044872 460 MMGDKGIQKIRG 471 (604)
Q Consensus 460 ~m~~~~~~~~~~ 471 (604)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 776555555544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.93 E-value=22 Score=37.02 Aligned_cols=120 Identities=13% Similarity=-0.036 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-----PMEPNAIVWGAL 407 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l 407 (604)
..+|...+.--...|+.+...-.|+...- .+.--.+.|--.+.-....|+.+-|..++... +..|......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677777777777777777777776542 11222344444555555557777777666554 222333322222
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 408 LAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 408 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
-+-..|+...|..+++.+.+--|+....-..-+++..+.|+.+.+..
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 24456788888888888876557766666666777788888888874
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.4 Score=28.64 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
+|..+...+...|+++.|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777763
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.86 E-value=9.6 Score=36.95 Aligned_cols=126 Identities=13% Similarity=0.010 Sum_probs=65.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCcHHHHHHHHHHc---hhhcCCCCchHHHHHH
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGI---QP--NGNTFVGLLCGCTHAGLVDEGRQFFNSM---SRVFSLTPMIEHYGCM 375 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~l 375 (604)
|..++.-.+.++++++.|+...+--- .| .-..+.++-+.|....++++|.-+.... .+.+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33344444556666666655543110 11 1235556666666666666665544422 2233333322233333
Q ss_pred H-----HHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 376 V-----DLLGRSGQLDEAHELIKSM-------PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 376 i-----~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+ -+|...|++.+|.+.-++. +..| -......+...|+..|+.|.|..-|+++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 3455566666666555543 3222 223455667778888888888877777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.44 Score=29.12 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+|..|...|...|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888899999888888654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.50 E-value=21 Score=35.88 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHH-HHHH
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCG-IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY-GCMV 376 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li 376 (604)
..|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.=...+ ||...| .-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 456666776667777889999999999988 567778888888755 4688899999999766443 443333 4566
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 377 DLLGRSGQLDEAHELIKSM--PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
..+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.++-|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788999999999999966 23333 4589999999999999999999999999988875
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.25 E-value=15 Score=36.56 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC----CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP----WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
...+|..+...+++.|+++.|...+.++.+.++ ..+.....-+......|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 455899999999999999999999999987652 2456777788999999999999999988877333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.23 E-value=38 Score=38.50 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDE 351 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 351 (604)
-.++.--+.|.+.+|..++..=.+.-...|.+...-+.+.+.+++|.-.|+..-+ ..-.+.+|...|++.+
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHH
Confidence 3344445566667776665433333333444444455556777777666655322 1234667888899999
Q ss_pred HHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044872 352 GRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEP 399 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 399 (604)
+..+..++.. +-.--..+-..|+.-+..+++.-+|.++..+....|
T Consensus 984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 9998887753 222223334678888889999999999988874343
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.98 E-value=31 Score=37.19 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHH
Q 044872 202 SMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
.|+..|...+++..|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 36677777777777777765543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.87 E-value=9.8 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
.+.-+..+...|+-+.--+++..+.+ +-+|++..+..+..||.+.|+..++..++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44445666666666666666666654 2345666666666777777777777777766666653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.8 Score=40.91 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666667777777777777777777777777777888888888888888877777765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.40 E-value=1.7 Score=37.08 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=24.8
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..++.+.++.++..+.-+.|..+..-..-+.++...|+|++|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344444455555444444554444444444455555555555555554433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.38 E-value=8 Score=37.31 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCc--hHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 214 KEALDMFYNMQRENLKPEY--YTMVGVLSACASLGA--LELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 214 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
+.+..+|+.+...|+..+. ...+.++..+..... ...+..+++.+.+.|+.+....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4456667777776765532 233334433332222 34666777777777777766665544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.28 E-value=12 Score=32.50 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=71.1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhc-CCHHHHHHHHccCC
Q 044872 116 INMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVF-VATSLVDLYAKC-GNMEKARRVFDQMP 193 (604)
Q Consensus 116 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~-g~~~~A~~~~~~~~ 193 (604)
++.++.+.+.+++|+...+..++..+.+.|.+....+ +++.++-+|.. +-..|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455556667777777777777777777776554333 33344333333 222222221110 01233344444433
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 044872 194 EKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMER 260 (604)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 260 (604)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888887664221 122234456666666665555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.6 Score=36.46 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=38.9
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
..++.++++.+++.+.-+.|+.+..-..-+.++...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46677777777777777777777777777777777777777777777776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=22 Score=34.09 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044872 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGC 343 (604)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 343 (604)
++..+-...+.++++.|+.+....+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 355555666666777776544444444444333 233556667777764 677777777662 34665555555444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.1 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=19.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
+|..+...|.+.|++++|.++|++..+ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 455566666666677777777766666 34543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.93 E-value=22 Score=34.04 Aligned_cols=17 Identities=18% Similarity=-0.122 Sum_probs=10.4
Q ss_pred HHhcCChHHHHHHHHHH
Q 044872 411 CRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~ 427 (604)
+.+.++++.|...|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45566666666666643
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.8 Score=39.60 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEK-----CGIQPNGNTFVG 338 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 338 (604)
..++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 446677888899999999999999888753 567899999999999999999999988765 467776655444
Q ss_pred HHHH
Q 044872 339 LLCG 342 (604)
Q Consensus 339 ll~a 342 (604)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=23 Score=33.93 Aligned_cols=80 Identities=13% Similarity=-0.021 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNG-YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT 344 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 344 (604)
+..+-...+.++++.|+.+....+...+.++|...-...+.++.+.+ ....+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444555555555555443333333333444433333333333332 12334444444432 234444444444555
Q ss_pred ccCc
Q 044872 345 HAGL 348 (604)
Q Consensus 345 ~~g~ 348 (604)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.36 E-value=11 Score=36.27 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCc--HHHHHHHHHHchhhcCCCCchHHHHHHH
Q 044872 314 VKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCTHAGL--VDEGRQFFNSMSRVFSLTPMIEHYGCMV 376 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 376 (604)
.+.+..+|+.+...|+..+. .....++..+..... +.++.++++.+.+. ++++...+|..+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 34567778888887776643 334444443333222 44777788888765 8887777766543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.87 E-value=79 Score=39.08 Aligned_cols=279 Identities=12% Similarity=0.079 Sum_probs=140.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcc-CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQ-MPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLG 246 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 246 (604)
+-.+...|+.-+++|...-+... ...++ ...-|.-....|++..|...|+.+.+. .|+ ..+++.++......+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhccc
Confidence 34444467777766666555542 22222 223344456667777777777777664 333 556666666655566
Q ss_pred chHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH-HH-HHHhCC--CHHHHHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVL-GTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAV-VS-GLSMNG--YVKVAFGVF 321 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g--~~~~A~~~~ 321 (604)
.++...-..+-..... .+...- ++.=+.+-.+.++++..+.... +++...|.+. +. ...+.. +.-.-.++.
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6555544333332221 112222 2222334466677776666555 5666667665 22 222211 111111233
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH----------HHchhhcCCCCchH------HHHHHHHHHhhcCCH
Q 044872 322 GQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFF----------NSMSRVFSLTPMIE------HYGCMVDLLGRSGQL 385 (604)
Q Consensus 322 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~~~~~~~~~~p~~~------~~~~li~~~~~~g~~ 385 (604)
+.+++.-+.| +.+|+..|.+..+.++. .......+..++.. -|..-+..-....+.
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 3333321111 11222222211111111 11111112333221 121111111111111
Q ss_pred HHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 386 DEAHELIKSM----PMEP-----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 386 ~~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.+-.--+++. ...| -..+|-...+.++..|.++.|....-.+.+..+ +..+.-.+......|+-..|..
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHH
Confidence 2111111111 1122 234899999999999999999998888777664 4688899999999999999999
Q ss_pred HHHHHhhCCC
Q 044872 457 IRSMMGDKGI 466 (604)
Q Consensus 457 ~~~~m~~~~~ 466 (604)
++++..+...
T Consensus 1724 ~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1724 VLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhc
Confidence 9999886543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.83 E-value=22 Score=32.67 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 167 FVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
..++--..+|..+|..+.|-..+++.-+ ...+-++++|+++|++-.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 3455556667777766665555544211 223345566666665543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.75 E-value=12 Score=32.90 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=9.2
Q ss_pred hcCCHHHHHHHHHhC
Q 044872 381 RSGQLDEAHELIKSM 395 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~ 395 (604)
..+++.+|.+.|-..
T Consensus 125 ~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 125 AQRDFKEAAELFLDS 139 (177)
T ss_pred HhchHHHHHHHHHcc
Confidence 356666666666555
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.33 E-value=14 Score=31.95 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=58.7
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH-HHHHH--HHHHhhcCC
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE-HYGCM--VDLLGRSGQ 384 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g~ 384 (604)
++.+..++|+.-|.++.+.|...=.+ ............|+-..|...|+++-.. .-.|.+. -..-| .-++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 34455555555555555544322111 1111222344556666666666665543 1122211 11111 123445677
Q ss_pred HHHHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 385 LDEAHELIKSMP--MEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 385 ~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+++.....+.+. -.|- ...-.+|.-+-.+.|++..|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777666666662 1221 22334555566677777777777777665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.12 E-value=1 Score=26.86 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=20.5
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 466667777777777777777777766 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.86 E-value=4.9 Score=31.13 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 316 VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 316 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 566677777777889999999999999999999999999999998764433 336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.74 E-value=5.1 Score=30.70 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44567777788888889999999999999999999999999999988754332 4445666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.48 E-value=2.5 Score=40.38 Aligned_cols=50 Identities=8% Similarity=0.035 Sum_probs=32.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 044872 306 SGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 306 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
.-|.++|.+++|+..|..... +.| |.+++..-..||.+...+..|..-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 456677777777777776665 556 66676666666666666655544333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.45 E-value=0.9 Score=38.49 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=56.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCC----------CcccHHHHHHH
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDK----------NVVSWTAIISG 105 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~ 105 (604)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++....- ....|...+-.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHH
Confidence 34455555556666666666665554455666666666666666656666666533221 11123333334
Q ss_pred HHhCCChhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHhcCCCh
Q 044872 106 YINEGNLEEAINMFRRLLHR-------GLKPDSFSIVRVLTACTQLGDL 147 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~ 147 (604)
|.+.|++++|++++..+... .-.+|...|..+++.|...+..
T Consensus 93 y~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 93 YSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 44444444444432111110 0124677888888888766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.27 E-value=13 Score=32.09 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=52.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH-H--HHHHHhcCCH
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSF-SIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS-L--VDLYAKCGNM 182 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-l--i~~y~~~g~~ 182 (604)
++.+..++|+.-|..+.+.|...=.. ....+....+..|+...|...|.++-+....|-+.--.+ | .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455555555555555443321000 001111123344555555555555544332222210000 0 1123445556
Q ss_pred HHHHHHHccCCC-CCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 044872 183 EKARRVFDQMPE-KDI---VSWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230 (604)
Q Consensus 183 ~~A~~~~~~~~~-~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 230 (604)
+......+.+.. .++ ..-.+|.-+-.+.|++.+|.+.|..+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 555555554432 121 123344455556666666666666665543333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.91 E-value=1.4 Score=26.10 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.62 E-value=11 Score=33.28 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------cccHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKDKD------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC---GIQPNGNTFVG 338 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ 338 (604)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678889999999999999999987643 235666777778889999888888776553 22222222222
Q ss_pred HHH--HHhccCcHHHHHHHHHHchhh
Q 044872 339 LLC--GCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 339 ll~--a~~~~g~~~~a~~~~~~~~~~ 362 (604)
+.. ++...+++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222 244578899988888776643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.09 E-value=1.8 Score=41.23 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKT 417 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 417 (604)
+-|.++|.+++|+..|.... .+.| +..++..-..+|.+..++..|..=.+.. .+.. -...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999999877 4566 7777777788899999988777655544 2211 123566666666678899
Q ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044872 418 DLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIR 458 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 458 (604)
.+|.+-++..++++|++.. |-..|++.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHh
Confidence 9999999999999998644 334444444455544443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.93 E-value=65 Score=35.27 Aligned_cols=52 Identities=8% Similarity=0.060 Sum_probs=37.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
++..+.+..+.+.+..+.+.. +|.+|..|..+.+.+++.+..++-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 555677888888888777664 4557788999999999988666655554444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.70 E-value=6.7 Score=26.45 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCC
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGF 513 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 513 (604)
....++-++.+.|++++|.+..+.+.+. +|...++......+.++|++.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3556788899999999999999999873 23334555555666777777763
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.35 E-value=1.5 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.18 E-value=2 Score=25.80 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 044872 156 YVNEAGKGRNVFVATSLVDLYAKCGNMEKAR 186 (604)
Q Consensus 156 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (604)
+.++.. +.+..+|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334433 446667777777777777777765
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.76 E-value=2.8 Score=28.27 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 406 ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
.+.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355678899999999999999999999986443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.1 Score=26.72 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677889999999999999999988865
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.16 E-value=0.8 Score=38.80 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=54.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHH
Q 044872 137 VLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 137 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 216 (604)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566778888888888888777777777774333 2333455555666666666
Q ss_pred HHHHHHH
Q 044872 217 LDMFYNM 223 (604)
Q Consensus 217 ~~~~~~m 223 (604)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=19 Score=36.28 Aligned_cols=85 Identities=8% Similarity=-0.022 Sum_probs=45.0
Q ss_pred HhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-P-MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
+...|.++.+...+... + +.....+...+++.....|+.+.|....+.++.-+-.++......+..-...|-+|++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 34456666666555544 1 122334555555555666666666666666665444444443333333344555666666
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+++...
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 6666654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.21 E-value=7.7 Score=31.91 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHc-cCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 415 KKTDLAEHVLNQLIA-LEPWNS-GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 415 ~~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+..+++.+++.+.+ -.|... .....|+-.+++.|+|+.+.++.+...+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 346667777777775 334432 3444566677788888888888777765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.72 E-value=2.5 Score=24.70 Aligned_cols=25 Identities=20% Similarity=-0.013 Sum_probs=12.5
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCC
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.++...|+.++|.+.++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3344455555555555555554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.53 E-value=31 Score=29.10 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=18.4
Q ss_pred HHHhcCCHHHHHHHHccCCCCC-cchHHHHHHHHHh
Q 044872 175 LYAKCGNMEKARRVFDQMPEKD-IVSWSSMIQGYAS 209 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 209 (604)
.+...|++++|.++|+++.+.. ...|..-+.++|-
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3456666777777766666533 2244433333333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.47 E-value=3.2 Score=24.55 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998876
|
... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.41 E-value=11 Score=28.88 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH-HhCCCCChhHHHHHH
Q 044872 114 EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVN-EAGKGRNVFVATSLV 173 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li 173 (604)
++.+-++.+...++.|+.....+.|+||.+.+|+..|.++++-+. +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 555666667777788999999999999999999999999988766 3332 334555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.13 E-value=44 Score=30.58 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHccCCCCc------hhHH
Q 044872 375 MVDLLGRS-GQLDEAHELIKSM-----PMEPNAIVWGALLA---GCRLHKKTDLAEHVLNQLIALEPWNS------GNYV 439 (604)
Q Consensus 375 li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~ 439 (604)
+...|..- .+++.|+..|+.. +.+.+...-..++. .-...+++.+|+.+|+++....-+++ .-|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444433 4556666666555 11222222223333 23577889999999999875443332 2333
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHhh
Q 044872 440 LLSNIYSAS-HKWNDAAKIRSMMGD 463 (604)
Q Consensus 440 ~l~~~~~~~-g~~~~A~~~~~~m~~ 463 (604)
.-+.+|.-+ ++.-.+.+.+++-.+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh
Confidence 333444333 566566666665554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.78 E-value=14 Score=32.95 Aligned_cols=73 Identities=21% Similarity=0.081 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCHHHHH
Q 044872 113 EEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG---KGRNVFVATSLVDLYAKCGNMEKAR 186 (604)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~ 186 (604)
++|++.|-++...+.--++... ..+..+-...|.+++.+++-.+++.. -.+|+.++.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4667777777665544333333 33333434567777777777666542 2456777777777777777777663
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=13 Score=37.45 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=67.7
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 311 NGYVKVAF-GVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 311 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
.|+...|- +++.-++...-.|+.+...+.+ ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45544443 3444444444455555444443 4567777777777666553 23334556667777777777777777
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 390 ELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 390 ~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+-+.| +.+ .++.+...-.......|-++++.-.+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777666 211 13333333333445566677777777777776654
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.40 E-value=25 Score=27.27 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 327 (604)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|-.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555555444321 222222223345678899999998888888888888776553 567777777777777776
Q ss_pred CCCCCHHHHHH
Q 044872 328 GIQPNGNTFVG 338 (604)
Q Consensus 328 g~~p~~~t~~~ 338 (604)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.39 E-value=3.8 Score=23.04 Aligned_cols=31 Identities=16% Similarity=0.015 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.|..+...+...++++.|...+++.++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666666666666666665553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 6e-13
Identities = 73/570 (12%), Positives = 160/570 (28%), Gaps = 153/570 (26%)
Query: 64 DEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLL 123
+FV+ L Y +L +K P + N+ + N+ R
Sbjct: 80 QKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 124 HRGLKPDSFSIVRVLTACTQLGDLSTAKWI--HGYVNEAGKGRNVFVATSLVDLYAKCGN 181
+ L+ L +L AK + G G G+ +
Sbjct: 137 YLKLR-------------QALLELRPAKNVLIDGV---LGSGKTWVALDVCLS------- 173
Query: 182 MEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSA 241
+V +M K + W ++ ++ P+ L+M + + P + S
Sbjct: 174 ----YKVQCKMDFK--IFWLNL--KNCNS--PETVLEMLQKLLY-QIDPNW------TSR 216
Query: 242 CASLGALELGV-WASSFMERNEFLSNPVLGTTLI---DMYAKCGRMAQA----CKVF--- 290
++L + + + R L + L+ ++ + A CK+
Sbjct: 217 SDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLTT 272
Query: 291 REMKDKDQVVWNAVVSGLSMNGYVKV-----AFGVFGQ----------LEKCGIQPNGNT 335
R + D + A + +S++ + + + E P
Sbjct: 273 RFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---- 327
Query: 336 FVGLLCGCTHAGLVDEG-------RQFFNSMSRVFS-----LTPMIEHYGCMVDLLGRSG 383
+ D + ++ + L P E+ L
Sbjct: 328 ---RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRL----S 379
Query: 384 QLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLI---ALEPWNSGNYVL 440
I ++ + ++W + V+N+L +E + +
Sbjct: 380 VFPP-SAHIPTILLS---LIWFDV--------IKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 441 LSNIY--SASHKWNDAAKIRSMMGDKGIQKIR---GCSWVEVDGVVHEFLV-----GDNS 490
+ +IY N+ A RS++ I K +D + + ++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 491 HPLSE--KIYSKLDELATKLKAAGFVPTTDHVLFD-----------IEEEEKQY------ 531
++ ++ L K++ + + I + + +Y
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 532 ---FLACHSEKLALAFGLITTAPKDVIRIA 558
FL E LI + D++RIA
Sbjct: 548 ILDFLPKIEEN------LICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 65/473 (13%), Positives = 130/473 (27%), Gaps = 129/473 (27%)
Query: 164 RNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYN- 222
+++ + + + R+F + K M+Q F +E L + Y
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ----EEMVQ-----KFVEEVLRINYKF 93
Query: 223 ----MQRENLKPE-----YYTMVGVLSACASLGALELGVW-ASSFMERNEFLSN--PVLG 270
++ E +P Y L + A + V +++ + L P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKN 152
Query: 271 TTLIDMYAKCGR---MAQACKVFR-EMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326
+ + G+ C ++ + K ++ W L++ V L+K
Sbjct: 153 VLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFW------LNL-KNCNSPETVLEMLQK 204
Query: 327 -CG-IQPNGNTFVGLLCGCTHA--GLVDEGRQFFNSMSRVFSL--------TPMIEHY-- 372
I PN + + E R+ S L +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 373 GCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWG-------ALLAGCRLHKKTDLAEHVLN 425
C + L R Q+ + + + + +LL + DL VL
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL- 323
Query: 426 QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFL 485
+ N LS I A IR + +W +
Sbjct: 324 ---------TTNPRRLSII---------AESIRDGL----------ATW--------DNW 347
Query: 486 VGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFG 545
N L+ I S L+ L E ++ F ++L++ F
Sbjct: 348 KHVNCDKLTTIIESSLNVLE-------------------PAEYRKMF-----DRLSV-F- 381
Query: 546 LITTAPKDVIRI-AKNLRVC---GDCHEAIKLISKITGREIIVRDNNRFHCFI 594
P I L + + + +++K+ ++ + I
Sbjct: 382 -----PPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 4e-08
Identities = 25/206 (12%), Positives = 58/206 (28%), Gaps = 8/206 (3%)
Query: 128 KPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARR 187
P + R+L L + G ++A + + A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 188 VFDQMPEK-------DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240
+ + + +++++ G+A G KE + + + ++ L P+ + L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 241 ACASLGALELGVWA-SSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299
+ M + + L+ + + KV Q+
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 300 VWNAVVSGLSMNGYVKVAFGVFGQLE 325
S L + Y K + +L
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 5e-08
Identities = 20/181 (11%), Positives = 50/181 (27%), Gaps = 8/181 (4%)
Query: 20 SMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCG 79
R P +L+ + + +A L + + +
Sbjct: 82 CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD 141
Query: 80 YLADALKVFDDIPDK-------NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSF 132
L A + + + + A++ G+ +G +E + + + GL PD
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201
Query: 133 SIVRVLTACTQLGDLSTAKW-IHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ 191
S L + + +++ G L+ + ++ +V
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 192 M 192
Sbjct: 262 F 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 5e-07
Identities = 23/209 (11%), Positives = 59/209 (28%), Gaps = 8/209 (3%)
Query: 204 IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELG---VWASSFMER 260
+Q + L + ++ C L L + +
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158
Query: 261 NEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK----DQVVWNAVVSGLS-MNGYVK 315
L + ++ +A+ G + V +KD D + + A + + +
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
Query: 316 VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCM 375
Q+ + G++ LL A ++ + + S L P + +
Sbjct: 219 TIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
Query: 376 VDLLGRSGQLDEAHELIKSMPMEPNAIVW 404
D+ + G++ + ++
Sbjct: 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 1e-06
Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTA-KWIHGYVNEAGKGR--NVF 167
+L+ + L ++ C L A + + + K + +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 168 VATSLVDLYAKCGNMEKARRVFDQMPEK----DIVSWSSMIQGYASNGFPKEAL-DMFYN 222
+ +++ +A+ G ++ V + + D++S+++ +Q +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 223 MQRENLKPEYYTMVGVLSACASLGALE 249
M +E LK + +LS L+
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLK 253
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 375 MVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHV--LNQLIALEP 432
D L + Q + A EL+ ++P+E + +L+A LH++ + + L Q +A P
Sbjct: 46 KADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANP 105
Query: 433 WNSGNYVLLSNIYSASHKWNDAA 455
N L+ Y+ + +A
Sbjct: 106 DNFELACELAVQYNQVGRDEEAL 128
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 604 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.66 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.35 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.32 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.21 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.18 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.13 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.1 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.09 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.03 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.02 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.99 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.98 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.97 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.94 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.92 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.92 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.88 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.87 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.85 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.82 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.79 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.79 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.79 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.75 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.62 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.5 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.91 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.45 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.44 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.02 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.57 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.34 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.02 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.97 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.36 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.11 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.95 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.75 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.31 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.3 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.8 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.3 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.63 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.52 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.27 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.03 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.7 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.36 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.78 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.7 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.67 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.97 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.34 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.45 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.4 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.27 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.64 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.02 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=359.86 Aligned_cols=453 Identities=9% Similarity=-0.024 Sum_probs=363.4
Q ss_pred ccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 044872 2 IRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYL 81 (604)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 81 (604)
+..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..+|+.+... +++..+++.++.+|.++|++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 4456677777777777777764 3456667777777777777777777777766432 55677777777777777777
Q ss_pred HHHHHHhccCCCC-------------------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 044872 82 ADALKVFDDIPDK-------------------NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD-SFSIVRVLTAC 141 (604)
Q Consensus 82 ~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 141 (604)
++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNH 244 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTT
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhh
Confidence 7777777743322 35677777777777777777777777777643 33 23333333332
Q ss_pred hcCCChHHH--HHH-HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHH
Q 044872 142 TQLGDLSTA--KWI-HGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 142 ~~~g~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A 216 (604)
...++.+.+ ..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 222211111 111 33333333344455667778889999999999999999988 7899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 044872 217 LDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD- 295 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 295 (604)
+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.+
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999865 3367789999999999999999999999998764 44788999999999999999999999998753
Q ss_pred --CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 296 --KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 296 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 479 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLN 479 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 467899999999999999999999999999853 346789999999999999999999999999864 234688999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-------PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+|..++.+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999988 44777 77999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhhCC
Q 044872 445 YSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|.+.|++++|.+.++++.+..
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999998743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=323.76 Aligned_cols=439 Identities=9% Similarity=-0.020 Sum_probs=372.8
Q ss_pred ccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHh---------------CCCCChh
Q 044872 2 IRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKA---------------GLDCDEF 66 (604)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~ 66 (604)
..+|.+.|++++|+.+|+++... +++..+++.++.++.+.|++++|..+|+++... +.+++..
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 45788999999999999998653 578899999999999999999999999853211 1223578
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHH--H-HHHHHHCCCCCChhhHHHHHHH
Q 044872 67 VKTSLLNLYVHCGYLADALKVFDDIPDK---NVVSWTAIISGYINEGNLEEAIN--M-FRRLLHRGLKPDSFSIVRVLTA 140 (604)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~~ 140 (604)
+++.++..|.+.|++++|.++|+++.+. +...|..+...+...+..+.+.. + +..+...+..++..+|+.++..
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999998653 34455556555544433332221 1 5555555555566677778888
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 044872 141 CTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEAL 217 (604)
Q Consensus 141 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 217 (604)
|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998876 58899999999999999999999999999853 47789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 044872 218 DMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-- 295 (604)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 295 (604)
++|+++.... +.+..++..+...+.+.|++++|..+++.+.+... .+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998643 45788899999999999999999999999988643 3678999999999999999999999998753
Q ss_pred -CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCc--h
Q 044872 296 -KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF---SLTPM--I 369 (604)
Q Consensus 296 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~ 369 (604)
.+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..+.+.|++++|.++|+.+.+.. +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 478899999999999999999999999998853 3467899999999999999999999999987542 55777 7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
.+|..++.+|.+.|++++|.+.|+++ ...| +..+|..+..+|...|++++|.+.++++++++|+++..+..++++|..
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999999999988 3344 788999999999999999999999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-26 Score=230.39 Aligned_cols=370 Identities=17% Similarity=0.178 Sum_probs=251.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChh
Q 044872 37 LKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLE 113 (604)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 113 (604)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556677777777777766653 22344555555666666777777666654432 34556666666666677777
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccC
Q 044872 114 EAINMFRRLLHRGLKPD-SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQM 192 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 192 (604)
+|+..|+++... .|+ ..++..+..++...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777666653 233 3345666666666666666666666665543 223344455555555555555555555554
Q ss_pred CC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhH
Q 044872 193 PE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVL 269 (604)
Q Consensus 193 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 269 (604)
.+ .+..+|+.+...|.+.|++++|+..|+++.. ... .+...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~p-~~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----------------------------------LDP-NFLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----------------------------------HCT-TCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------cCC-CcHHH
Confidence 32 1234455555555555555555555555544 321 13445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH 345 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 345 (604)
+..+...+...|++++|...|++... .+..+|..+...|...|++++|++.|+++.+ ..| +..++..+..++..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Confidence 56666677777777777777776542 3456777888888888888888888888888 445 45678888888999
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
.|++++|...|+.+.+. .+++..++..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988854 3456778888999999999999999999887 4455 466889999999999999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 424 LNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 424 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+++++++.|+++.+|..++.++...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999988877663
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=250.44 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=119.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---------chHHHHHHHHHHHHcCCCCchhH
Q 044872 199 SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLG---------ALELGVWASSFMERNEFLSNPVL 269 (604)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 269 (604)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|+.|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 355566666666666666666666666666666666666666665443 24566666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 345 (604)
||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666642 56666666666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR 381 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 381 (604)
.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 66666666666666654 666666666666666654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-25 Score=225.54 Aligned_cols=352 Identities=14% Similarity=0.123 Sum_probs=299.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPD-SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (604)
+...+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+...++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345667788999999998888775 344 4455666667788899999999888888765 557788999999999999
Q ss_pred CHHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHH
Q 044872 181 NMEKARRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASS 256 (604)
Q Consensus 181 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 256 (604)
++++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999988753 3 4457899999999999999999999998875 454 3456667778888999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-
Q 044872 257 FMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN- 332 (604)
Q Consensus 257 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 332 (604)
.+.+... .+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++... ..|+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 9988653 3577889999999999999999999998864 3556788899999999999999999999988 4564
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLA 409 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~ 409 (604)
..++..+..++...|++++|...|+.+.+. .| +...+..+...|.+.|++++|.+.|+++ .. +++..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 678889999999999999999999999853 44 4678999999999999999999999988 32 346779999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=247.35 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=167.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCChh
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGD---------LSTAKWIHGYVNEAGKGRNVF 167 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~g~~~~~~ 167 (604)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 678899999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044872 168 VATSLVDLYAKCGNMEKARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACA 243 (604)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (604)
+||+||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998864 7889999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044872 244 SLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
+.|++++|.++++.|.+.+..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-23 Score=215.48 Aligned_cols=425 Identities=12% Similarity=-0.006 Sum_probs=298.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHh
Q 044872 32 TFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYIN 108 (604)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 108 (604)
.+......+...|++++|...|+.+++.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777764 5677777777777777777777777776542 355677777788888
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH---HHHHHHhcCCHHHH
Q 044872 109 EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS---LVDLYAKCGNMEKA 185 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~y~~~g~~~~A 185 (604)
.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..|+...... .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 8888888888888777642 3434444444333322222222222221111111111000000 00000111111111
Q ss_pred HHHHccCC---------CC-CcchHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCCC--------CHHHHHHHH
Q 044872 186 RRVFDQMP---------EK-DIVSWSSMIQGYAS---NGFPKEALDMFYNMQR-----ENLKP--------EYYTMVGVL 239 (604)
Q Consensus 186 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll 239 (604)
...+.... .+ +...|......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12222211 11 23344445555554 8999999999999887 32122 245667778
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHH
Q 044872 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKV 316 (604)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 316 (604)
..+...|+++.|...+..+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999887654 88888899999999999999999998764 356788899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 317 AFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 317 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
|+..|+++.+. .| +..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999984 44 45688888899999999999999999988642 334678888999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 396 ----PMEPN----AIVWGALLAGCRL---HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 396 ----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+..|+ ..+|..+...+.. .|+++.|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 32233 3488899999999 999999999999999999999999999999999999999999999999874
Q ss_pred C
Q 044872 465 G 465 (604)
Q Consensus 465 ~ 465 (604)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-23 Score=216.49 Aligned_cols=431 Identities=12% Similarity=-0.017 Sum_probs=307.9
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.+.+.|++++|+..|+++...+ |+..+|..+..++...|+++.|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 4678999999999999999865 688999999999999999999999999999975 4467789999999999999999
Q ss_pred HHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+...+...
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 9999987643 3444455555554443333333333333222222222211111100000011111111111111111
Q ss_pred CC---------CCChhHHHHHHHHHHh---cCCHHHHHHHHccCCC-----------------CCcchHHHHHHHHHhCC
Q 044872 161 GK---------GRNVFVATSLVDLYAK---CGNMEKARRVFDQMPE-----------------KDIVSWSSMIQGYASNG 211 (604)
Q Consensus 161 g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li~~~~~~g 211 (604)
.. +.+...+..+...+.. .|++++|...|+++.+ .+..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 10 1224444444444444 7888888888876543 12346777888888999
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044872 212 FPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFR 291 (604)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (604)
++++|+..|+++.... |+..++..+...+...|+++.|...+..+.+... .+..++..+...|...|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999888754 3467777888888889999999999988887653 356778889999999999999999998
Q ss_pred hcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc
Q 044872 292 EMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM 368 (604)
Q Consensus 292 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 368 (604)
++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 8753 356788888999999999999999999998742 224577888888999999999999999988754322232
Q ss_pred ----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 369 ----IEHYGCMVDLLGR---SGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 369 ----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 3478889999999 99999999999987 3334 5678899999999999999999999999999998877766
Q ss_pred HH
Q 044872 440 LL 441 (604)
Q Consensus 440 ~l 441 (604)
.+
T Consensus 488 ~~ 489 (514)
T 2gw1_A 488 AI 489 (514)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-22 Score=205.45 Aligned_cols=335 Identities=12% Similarity=0.074 Sum_probs=236.8
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 044872 95 NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD 174 (604)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (604)
++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45566677777777777777777777776642 2355666666667777777777777777776664 334566667777
Q ss_pred HHHhcCCHHHHHHHHccCCCCCc------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch
Q 044872 175 LYAKCGNMEKARRVFDQMPEKDI------VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGAL 248 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (604)
+|.+.|++++|.+.|+++.+.++ ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 77777777777777776654222 44444433311110 11112233444555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 325 (604)
+.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555433 22556677777888888888888888877653 456788888888888888888888888888
Q ss_pred HCCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHchhhcCCCCc-----hHHHHHHHHHHhhcCCHHH
Q 044872 326 KCGIQPNGN-TFVGL------------LCGCTHAGLVDEGRQFFNSMSRVFSLTPM-----IEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 326 ~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 387 (604)
. ..|+.. .+..+ ..++...|++++|..+|+.+.+. .|+ ..++..+..++.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7 445443 33333 77899999999999999999864 344 4578889999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH------------HHHHhcC----
Q 044872 388 AHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS------------NIYSASH---- 449 (604)
Q Consensus 388 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g---- 449 (604)
|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999987 4445 6789999999999999999999999999999999999999988 4566666
Q ss_pred -ChHHHHHHHHH
Q 044872 450 -KWNDAAKIRSM 460 (604)
Q Consensus 450 -~~~~A~~~~~~ 460 (604)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 55666777665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=206.43 Aligned_cols=422 Identities=12% Similarity=0.042 Sum_probs=306.2
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHH
Q 044872 30 NFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGY 106 (604)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 106 (604)
...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4566777777888888888888888888875 34677888888888888888888888887643 4667788888888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHH
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG--KGRNVFVATSLVDLYAKCGNMEK 184 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~ 184 (604)
...|++++|+..|+.+ .. .|+... ..+..+...+....+...+..++... ..+........+..|....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 8888888888888633 22 222211 11223333344566777777665431 01111122344555677788888
Q ss_pred HHHHHccCCCCCcc---hHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHcc
Q 044872 185 ARRVFDQMPEKDIV---SWSSMIQGYASN--------GFPKEALDMFYNMQRENLKPE--------YYTMVGVLSACASL 245 (604)
Q Consensus 185 A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~ 245 (604)
+...+......+.. .+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88888777665544 333443333222 4788899999888764 343 22455566677788
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
|+++.|...+..+.+... +...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 899999999999888653 477788888899999999999999988753 456788889999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 044872 323 QLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PM 397 (604)
Q Consensus 323 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 397 (604)
++.+. .| +...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +.
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99884 34 3567888888999999999999999988864 2334667888899999999999999999886 11
Q ss_pred CC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 398 EP----NAIVWGALLAGCRLH----------KKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 398 ~p----~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+ ....+..+...+... |++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 222344455667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 044872 464 KG 465 (604)
Q Consensus 464 ~~ 465 (604)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-21 Score=196.28 Aligned_cols=343 Identities=12% Similarity=0.048 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 044872 65 EFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTAC 141 (604)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 141 (604)
...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|+..|+++.+.+. .+..++..+...+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHH
Confidence 33444445555555555555555544321 2344555555555555555555555555554321 1334445555555
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCh---hHHHH------------HHHHHHhcCCHHHHHHHHccCCC---CCcchHHHH
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNV---FVATS------------LVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSM 203 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~------------li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 203 (604)
...|++++|...++.+.+.. +.+. ..+.. +...|.+.|++++|...|+++.+ .+...|..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 55555555555555554432 1122 33333 34457777888888887777643 355677777
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRM 283 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 283 (604)
...|.+.|++++|++.|+++.... +.+..++..+...+...|+++.|...+..+.+.... +...+..+... +
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~----~-- 255 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV----K-- 255 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH----H--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH----H--
Confidence 777888888888888887776642 234566666666777777777777777766654322 22222222000 0
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 044872 284 AQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-----GNTFVGLLCGCTHAGLVDEGRQFFNS 358 (604)
Q Consensus 284 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~ 358 (604)
. ...+..+...|...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|...++.
T Consensus 256 -~------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 256 -K------------LNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -H------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -H------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 00111224555566666666666666655 3343 23455555566666666666666666
Q ss_pred chhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----ChHH
Q 044872 359 MSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAG------------CRLHK-----KTDL 419 (604)
Q Consensus 359 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~~-----~~~~ 419 (604)
+.+. .+.+...+..+..+|...|++++|.+.++++ ...|+ ...+..+..+ |...| +.++
T Consensus 321 a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 321 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 5532 1223555666666666666666666666655 44443 3344444322 22333 5677
Q ss_pred HHHHHHH-HHccCCCC
Q 044872 420 AEHVLNQ-LIALEPWN 434 (604)
Q Consensus 420 a~~~~~~-~~~~~p~~ 434 (604)
+.+.+++ .++..|++
T Consensus 399 ~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 399 IIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhCCCC
Confidence 7888886 66777764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-18 Score=169.03 Aligned_cols=324 Identities=10% Similarity=0.025 Sum_probs=199.8
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDL 175 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (604)
+..|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|+++.|...++.+++.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45677777788888888888888888877532 345667777777777777777777777777764 3355666677777
Q ss_pred HHhcCCHHHHHHHHccCCCCCc------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchH
Q 044872 176 YAKCGNMEKARRVFDQMPEKDI------VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALE 249 (604)
Q Consensus 176 y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (604)
|.+.|++++|...|++..+.++ ..+..+...+. ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 7777777777777766644222 22222210000 000111223444455555
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 250 LGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
.|...+..+.+... .+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555544432 2445555666666666666666666666543 2445666666667777777777777777666
Q ss_pred CCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHchhhcCCCCch--HHHHHHHHHHhhcCCHHHHHHH
Q 044872 327 CGIQPNG-NTFV------------GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI--EHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 327 ~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 391 (604)
. .|+. ..+. .+...+...|++++|...++.+.+...-.|.. ..+..+...|...|++++|.+.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3 3332 2211 22455677778888888877776542111111 2244566777778888888888
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 392 IKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 392 ~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 8776 3334 566777777788888888888888888888888877777766665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-18 Score=167.63 Aligned_cols=304 Identities=12% Similarity=0.034 Sum_probs=232.8
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHH
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGY 207 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 207 (604)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456667777778888888888888887765 34567777788888888888888888877643 3456777777788
Q ss_pred HhCCCchHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044872 208 ASNGFPKEALDMFYNMQRENLKP---EYY-TMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRM 283 (604)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 283 (604)
.+.|++++|+..|++..+. .| +.. .+..+... .. ......+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 8888888888888777664 34 221 11111110 00 11233456788999999
Q ss_pred HHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 284 AQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 284 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998753 466788899999999999999999999998842 3356788899999999999999999999988
Q ss_pred hhcCCCCc-hHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHH
Q 044872 361 RVFSLTPM-IEHYG------------CMVDLLGRSGQLDEAHELIKSM-PMEPN-A----IVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 361 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~~~~~~a~ 421 (604)
+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|+++.|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 64 333 33222 2366789999999999999987 33343 2 23555777899999999999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 422 HVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=177.60 Aligned_cols=349 Identities=13% Similarity=0.096 Sum_probs=166.2
Q ss_pred hcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 044872 77 HCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGY 156 (604)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 156 (604)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 49999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 157 VNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999977 3688
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHH
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKV 316 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 316 (604)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999887 378999999999999999999988777654 444445568899999999999
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC------chHHHHHHHHHHhhcCCHHHH
Q 044872 317 AFGVFGQLEKCGIQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP------MIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 317 A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 388 (604)
|+.+++...... +-... |...++-+-.+.+++.+..+.|..-. +++| +...|.-++-.|...++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999987633 22233 44444545555667777777776443 5555 356789999999999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH-------------HHHHHhcCChHHH
Q 044872 389 HELIKSMP-MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL-------------SNIYSASHKWNDA 454 (604)
Q Consensus 389 ~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-------------~~~~~~~g~~~~A 454 (604)
...+-+-+ ..-+... +.....+..+.|.--++..-.++..| .....| +.++.+.|.+.-+
T Consensus 302 ~~tm~~h~~~a~~~~~---f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~ 375 (449)
T 1b89_A 302 IITMMNHPTDAWKEGQ---FKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 375 (449)
T ss_dssp HHHHHHSTTTTCCHHH---HHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred HHHHHhCChhhhhhHH---HHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHH
Confidence 88766553 2223332 33334455555544444444444444 223333 3444555555555
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
..++..+.+.
T Consensus 376 ~~yl~~v~~~ 385 (449)
T 1b89_A 376 KPYLRSVQNH 385 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5555444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=183.95 Aligned_cols=357 Identities=11% Similarity=0.072 Sum_probs=256.7
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDL 175 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (604)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|...++.+++.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887753 2366677778888888888888888888888775 4467778888888
Q ss_pred HHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCchH
Q 044872 176 YAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRE------NLKPEYYTMVGVLSACASLGALE 249 (604)
Q Consensus 176 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~ 249 (604)
|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+... ....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF----FGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH----HHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH----HHhcChH
Confidence 88888888888888644 222223333344555666667888888887542 223444333332 2233333
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh--------cCCHHHHHHHHHhcCCCCc----------ccHHHHHHHHHh
Q 044872 250 LGVWASSFMERNEFLSN-PVLGTTLIDMYAK--------CGRMAQACKVFREMKDKDQ----------VVWNAVVSGLSM 310 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~ 310 (604)
.+...+.... ...+. ......+...+.. .|++++|..+|+++.+.++ .+|..+...+..
T Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 3222111111 01111 1133333333332 2578899999988876332 246667778889
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHE 390 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 390 (604)
.|++++|+..|+++.+ ..|+..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+
T Consensus 256 ~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998 56777888889999999999999999999988642 3357788999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 391 LIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 391 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99988 3334 456889999999999999999999999999999999999999999999999999999999998743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-16 Score=164.56 Aligned_cols=376 Identities=9% Similarity=0.005 Sum_probs=293.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHhccCCC-CCcccHHHHHHHHHh----CCChhHHHHHHH
Q 044872 50 VRSHSLIVKAGLDCDEFVKTSLLNLYVH----CGYLADALKVFDDIPD-KNVVSWTAIISGYIN----EGNLEEAINMFR 120 (604)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 120 (604)
...+....+.| +......|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444444433 56667777777777 7888888888876543 466778888888888 888999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHccC
Q 044872 121 RLLHRGLKPDSFSIVRVLTACTQ----LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK----CGNMEKARRVFDQM 192 (604)
Q Consensus 121 ~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~ 192 (604)
+..+.| +...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .+++++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 888764 55666667777766 778999999999888876 56777888888887 78899999998876
Q ss_pred CC-CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCC
Q 044872 193 PE-KDIVSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS----LGALELGVWASSFMERNEF 263 (604)
Q Consensus 193 ~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 263 (604)
.+ .+..++..+...|.+ .+++++|++.|++..+.| +...+..+...+.. .++.+.|...+....+.+
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 54 466788888888888 889999999999888764 45566666666664 788999999999888765
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CcccHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCH
Q 044872 264 LSNPVLGTTLIDMYAK----CGRMAQACKVFREMKDK-DQVVWNAVVSGLSMN-----GYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
++..+..|..+|.. .++.++|...|++..+. +...+..+...|... ++.++|+.+|++..+.| +.
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 45667778888887 89999999999987654 667778888888887 89999999999998865 34
Q ss_pred HHHHHHHHHHhccC---cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHH
Q 044872 334 NTFVGLLCGCTHAG---LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDEAHELIKSMPMEPNAIVWGA 406 (604)
Q Consensus 334 ~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ 406 (604)
..+..+...+...| ++++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 55666666666655 889999999988863 356778888888888 8999999999998822336778888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHccCCC---CchhHHHHHHHHHh
Q 044872 407 LLAGCRL----HKKTDLAEHVLNQLIALEPW---NSGNYVLLSNIYSA 447 (604)
Q Consensus 407 ll~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 447 (604)
|...|.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8888887 89999999999999998854 66777777776654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=163.27 Aligned_cols=285 Identities=11% Similarity=-0.025 Sum_probs=195.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 164 RNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
.+..++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444555556666666666666666665532 233445555566666666666666666665532 223445555556
Q ss_pred HHHccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHH
Q 044872 241 ACASLG-ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKV 316 (604)
Q Consensus 241 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 316 (604)
.+...| +++.|...+..+.+... .+...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 66666666666665432 2455666777777777777777777776643 245566667777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcC-------CCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 317 AFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS-------LTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 317 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887732 22456777777788888888888888887765321 1334567888888899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH-HhcCCh
Q 044872 390 ELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY-SASHKW 451 (604)
Q Consensus 390 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 451 (604)
+.+++. ...| +...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 998887 3333 5568888888899999999999999999999999988999998888 455554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-16 Score=164.05 Aligned_cols=410 Identities=9% Similarity=0.000 Sum_probs=253.1
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC--CCcccHHHHHHH-
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD--KNVVSWTAIISG- 105 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~- 105 (604)
+..+|..++.. .+.|+++.|+.+++.+++. .+.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44556666653 4556666666666666654 233455666666666666666666666666543 444555555532
Q ss_pred HHhCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------CCChHHHHHHHHHHHHhCCCCChhHHH
Q 044872 106 YINEGNLEEAIN----MFRRLLH-RGLKPD-SFSIVRVLTACTQ---------LGDLSTAKWIHGYVNEAGKGRNVFVAT 170 (604)
Q Consensus 106 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (604)
....|+.++|.+ +|++.+. .|..|+ ...|...+..... .|+++.|..+|+.+++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 223455555443 4444433 233332 2333333333322 345555555555555421000011222
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH------HCC---CCCCH--------H
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ------REN---LKPEY--------Y 233 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~ 233 (604)
.........|. ..+..++. .+.+++.+|..++.+.. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 21111000000 00111110 12345566666665532 111 23431 2
Q ss_pred HHHHHHHHHHc----cCch----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHH
Q 044872 234 TMVGVLSACAS----LGAL----ELGVWASSFMERNEFLSNPVLGTTLIDMYAK-------CGRMA-------QACKVFR 291 (604)
Q Consensus 234 t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~ 291 (604)
.+...+..... .++. ..+..+++.++... +.++.+|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 33333322211 1222 36667888887753 3367788888888775 79987 8999999
Q ss_pred hcCC---C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchhhcCC
Q 044872 292 EMKD---K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 292 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
+..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.++|+...+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 8864 3 467899999999999999999999999998 56753 47888888888999999999999998853
Q ss_pred CCc-hHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch----h
Q 044872 366 TPM-IEHYGCMVDL-LGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG----N 437 (604)
Q Consensus 366 ~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~ 437 (604)
.|. ...|.....+ +...|+.++|.++|++. ...| +...|..++..+...|+.+.|..+|+++++..|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 333 3333333222 34689999999999977 3334 5779999999999999999999999999998776654 6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|...+....+.|+.+.+..+.+++.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777788888999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-16 Score=166.75 Aligned_cols=396 Identities=11% Similarity=0.035 Sum_probs=276.4
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCChHH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNL-YVHCGYLAD 83 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~ 83 (604)
+.+.|++++|..+|+++++.. +.+...|...+..+.+.|+++.|..+|+.+++.. |+...|...+.. ....|+.++
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 356899999999999999863 3366678899999999999999999999998864 577777777753 345677777
Q ss_pred HHH----HhccCC------CCCcccHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCCh---hhHHHHHHHH
Q 044872 84 ALK----VFDDIP------DKNVVSWTAIISGYIN---------EGNLEEAINMFRRLLHRGLKPDS---FSIVRVLTAC 141 (604)
Q Consensus 84 A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~ 141 (604)
|.+ +|+... .++...|...+....+ .|+++.|..+|++.+.. |+. ..|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e 175 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYE 175 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHH
Confidence 665 666532 2356788888887655 68899999999999873 432 2222221111
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHcc-------CC------CCC--------cchH
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ-------MP------EKD--------IVSW 200 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-------~~------~~~--------~~~~ 200 (604)
...+. ..+. .++. .+.++++.|..++.. +. .|+ ...|
T Consensus 176 ~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 176 EGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred Hhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 01110 0111 1111 112334444443332 11 111 2356
Q ss_pred HHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCchH-------HHHHHHHHH
Q 044872 201 SSMIQGYASN----GFP----KEALDMFYNMQRENLKPEYYTMVGVLSACAS-------LGALE-------LGVWASSFM 258 (604)
Q Consensus 201 ~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~ 258 (604)
...+.....+ ++. ++|..+|++..... +-+...|......+.. .|+++ .|..+++..
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 6555433332 222 37778888887742 2345566666666654 68876 889999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Cc-ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H
Q 044872 259 ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQ-VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-G 333 (604)
Q Consensus 259 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 333 (604)
++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .|+ .
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCch
Confidence 8632344688899999999999999999999998764 3 32 47888888888999999999999999884 343 2
Q ss_pred HHHHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHH
Q 044872 334 NTFVGLLC-GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN--AIVWGA 406 (604)
Q Consensus 334 ~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ 406 (604)
..+..... .+...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33333222 2346899999999999988653 235788999999999999999999999987 33343 458999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+.....+|+.+.+..+.+++.+..|+
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999999998884
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-17 Score=164.71 Aligned_cols=279 Identities=12% Similarity=0.011 Sum_probs=217.9
Q ss_pred HhcCCHHHHHH-HHccCCC-----C--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch
Q 044872 177 AKCGNMEKARR-VFDQMPE-----K--DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGAL 248 (604)
Q Consensus 177 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (604)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34477888887 7775543 1 34568888888889999999999998888753 33566777888888888999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHH---------------HHHHHHh
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNA---------------VVSGLSM 310 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~ 310 (604)
+.|...+..+.+... .+..++..+...|...|++++|...|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 999999888887653 36778888888999999999999998877542 2222221 1333348
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPN---GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 387 (604)
.|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++
T Consensus 194 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999884 454 788889999999999999999999998854 23347789999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------chhHHHHHHHHHhcCChHHH
Q 044872 388 AHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-----------SGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 388 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 454 (604)
|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ ...|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 56789999999999999999999999999988877 78999999999999999999
Q ss_pred HHHHHHH
Q 044872 455 AKIRSMM 461 (604)
Q Consensus 455 ~~~~~~m 461 (604)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9988744
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=156.30 Aligned_cols=265 Identities=12% Similarity=0.010 Sum_probs=226.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044872 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLI 274 (604)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 274 (604)
.+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|+++.|...+..+.+... .+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 466778888999999999999999999998753 23445566677888999999999999999988653 3577888899
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 044872 275 DMYAKCG-RMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 275 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 350 (604)
..|...| ++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999998843 223466777888999999999
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCChHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM----------EPNAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~~~~~~ 419 (604)
+|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999853 2335778889999999999999999999876 11 2345689999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-15 Score=153.94 Aligned_cols=352 Identities=12% Similarity=0.021 Sum_probs=295.3
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCC
Q 044872 94 KNVVSWTAIISGYIN----EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ----LGDLSTAKWIHGYVNEAGKGRN 165 (604)
Q Consensus 94 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 165 (604)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 477778888888888 899999999999998864 56677778888877 899999999999999876 6
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHccCCC-CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 166 VFVATSLVDLYAK----CGNMEKARRVFDQMPE-KDIVSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 166 ~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
+..+..|..+|.. .+++++|.+.|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778889999998 8899999999998765 456788888888888 789999999999998865 566777
Q ss_pred HHHHHHHc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCcccHHHHHHH
Q 044872 237 GVLSACAS----LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK----CGRMAQACKVFREMKD-KDQVVWNAVVSG 307 (604)
Q Consensus 237 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 307 (604)
.+...+.. .++.++|...+....+.+ ++..+..|..+|.. .+++++|...|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999998876 56777888888886 8999999999998765 466777788888
Q ss_pred HHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHchhhcCCCCchHHHHHHHHH
Q 044872 308 LSM----NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA-----GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL 378 (604)
Q Consensus 308 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 378 (604)
|.. .++.++|+.+|++..+.| +...+..+...+... +++++|...|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998765 445666666777766 8999999999998863 2 45567778888
Q ss_pred HhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh----
Q 044872 379 LGRSG---QLDEAHELIKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA---- 447 (604)
Q Consensus 379 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 447 (604)
|.+.| ++++|.++|++.-...+...+..|...|.. .++.++|...++++.+.+ ++.++..|+.+|.+
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87766 789999999988223577888899999988 899999999999998764 57899999999998
Q ss_pred cCChHHHHHHHHHHhhCCC
Q 044872 448 SHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 448 ~g~~~~A~~~~~~m~~~~~ 466 (604)
.+++++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-16 Score=152.52 Aligned_cols=267 Identities=9% Similarity=-0.003 Sum_probs=186.7
Q ss_pred HhcCCHHHHHHHHccCCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 044872 177 AKCGNMEKARRVFDQMPEKDI----VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV 252 (604)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (604)
...|+++.|+..+++....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344556666655555443221 1233445556666666666554432 12334445555555556666666666
Q ss_pred HHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 044872 253 WASSFMERNEFLS-NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP 331 (604)
Q Consensus 253 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 331 (604)
..++.+...+..| ++.++..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 6666665554323 455666777889999999999999998 457778888999999999999999999999884 46
Q ss_pred CHHHH---HHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 044872 332 NGNTF---VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGA 406 (604)
Q Consensus 332 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 406 (604)
+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+..+|.+.|++++|.+.+++. ...| +..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 64311 12233444568999999999999875 3456888999999999999999999999987 4445 5668999
Q ss_pred HHHHHHhcCChHH-HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044872 407 LLAGCRLHKKTDL-AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 407 ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 457 (604)
++..+...|+.++ +.++++++++++|+++.. .+...+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999875 678999999999998754 3445555556655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-14 Score=156.32 Aligned_cols=379 Identities=12% Similarity=0.082 Sum_probs=282.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 044872 33 FPFVLKACAREHDFQLGVRSHSLIVKAG--LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEG 110 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 110 (604)
-....+++...|.+.++.++++.++..+ +..+....+.|+....+. +......+.++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 4556777788888888888888887432 113345566666666665 4455555554443222 455778888899
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
.+++|..+|++.. . .....+.++. ..+++++|.++.+.+ .+..+|..+..++.+.|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999852 1 1122233322 667888888888754 357789999999999999999999997
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 191 QMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
+. .|...|..++..+.+.|++++|+++|...++.. ++....+.+..+|++.++++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 64 677788889999999999999999998777653 33333335888889988887544332 2 3355566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 350 (604)
..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 67999999999999999999986 48999999999999999999999876 35688888999999999999
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh--cCChHHHHHHHHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCRL--HKKTDLAEHVLNQ 426 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~--~~~~~~a~~~~~~ 426 (604)
.|......+ ..+.+.+..++..|.+.|.+++|+.+++.. +..|.. ..|.-|...+.+ -++..++.+.|..
T Consensus 1268 LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 998876543 335666778999999999999999999877 665543 366556555554 4566677777776
Q ss_pred HHccCC-----CCchhHHHHHHHHHhcCChHHHHHH
Q 044872 427 LIALEP-----WNSGNYVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 427 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 457 (604)
-..+.| .+...|.-++-.|.+.|+|+.|...
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 666555 5667889999999999999999853
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-15 Score=160.12 Aligned_cols=397 Identities=14% Similarity=0.120 Sum_probs=275.2
Q ss_pred ccchhhcCCchHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 2 IRGFVSNDCFQHAIEFYNSMRNEGF--LPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCG 79 (604)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 79 (604)
+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.+.....- ......+...+...|
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNE 1063 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCC
Confidence 4578899999999999999984321 11233444455555544 5555555555442 122344667777889
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 80 YLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+.+++...|++++|...|...
T Consensus 1064 lyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred CHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 9999999998865 22223333333 667888888888755 24667888889999999999998888553
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 044872 160 AGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVG 237 (604)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 237 (604)
.|...|..++..|.+.|++++|.+.|....+ ++....+.++.+|++.+++++ ++-| .. .|+...+..
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQQ 1200 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHHH
Confidence 4677778889999999999999988876543 333344458888888888875 3333 11 346667777
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHH
Q 044872 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 317 (604)
+...|...|+++.|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence 888888999999999888874 36788888899999999999998877 4567888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhh--cCCHHHHHHHHHh
Q 044872 318 FGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGR--SGQLDEAHELIKS 394 (604)
Q Consensus 318 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~--~g~~~~A~~~~~~ 394 (604)
...... +..+...+..++..|...|.+++|+.+++... ++.|. ...|+-+..+|.+ -+++.++.++|..
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 776654 33345556678888888888888888887766 44442 4455555555554 4566777777654
Q ss_pred C-CCCC------CHHHHHHHHHHHHhcCChHHHHHH--------HHH-----HHccCCCCchhHHHHHHHHHhcC
Q 044872 395 M-PMEP------NAIVWGALLAGCRLHKKTDLAEHV--------LNQ-----LIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 395 ~-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~--------~~~-----~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
- .++| +...|.-+...|.+.|+++.|... |+. .+ ..+.|+..|.-.+..|...+
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i-~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII-TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh-cccccHHHHHHHHHHHHhhC
Confidence 4 3333 455788888888888888888732 221 11 13556666666666666555
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=160.71 Aligned_cols=261 Identities=10% Similarity=-0.058 Sum_probs=210.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|+++.|...+..+++... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45668888889999999999999999988753 33677788888888999999999999998888653 35778888999
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---Cc----------ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKDK---DQ----------VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ-PNGNTFVGLLC 341 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~~---~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 341 (604)
.|.+.|++++|...|+++.+. +. ..+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999887642 11 23344578899999999999999999984321 15788999999
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998864 2335778999999999999999999999987 4445 47799999999999999999
Q ss_pred HHHHHHHHHccCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPW------------NSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 420 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
|...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988776 357889999999999999999887765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-17 Score=161.63 Aligned_cols=280 Identities=13% Similarity=0.044 Sum_probs=127.6
Q ss_pred cCChHHHHH-HhccCCC-----C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH
Q 044872 78 CGYLADALK-VFDDIPD-----K--NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLST 149 (604)
Q Consensus 78 ~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 149 (604)
.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355566665 5553321 1 23455566666666666666666666665542 1233444444455555555555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 044872 150 AKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLK 229 (604)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 229 (604)
|...+..+++.. + .+..+|..+...|...|++++|++.|+++....
T Consensus 117 A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 162 (368)
T 1fch_A 117 AISALRRCLELK-P-------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT-- 162 (368)
T ss_dssp HHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHhcC-C-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 555555554443 2 233445555555555555555555555555432
Q ss_pred CCHH-HHHH---------------HHHHHHccCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 230 PEYY-TMVG---------------VLSACASLGALELGVWASSFMERNEFLS-NPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 230 p~~~-t~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
|+.. .+.. .+..+...|+++.|...+..+.+..... +..++..+...|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~--------------- 227 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF--------------- 227 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH---------------
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH---------------
Confidence 2111 1100 1111124444444444444444432211 234444444444
Q ss_pred cCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHH
Q 044872 293 MKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEH 371 (604)
Q Consensus 293 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 371 (604)
...|++++|+..|+++... .| +..++..+...+...|++++|...|+.+.+. .+.+...
T Consensus 228 ----------------~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 287 (368)
T 1fch_A 228 ----------------NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRS 287 (368)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ----------------HHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 4444444444444444442 22 2344444444555555555555555544432 1122344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEP------------NAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+..+...|.+.|++++|.+.|+++ ...| ...+|..+..++...|+.+.|..++++.
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 445555555555555555555444 1111 1456666666666666666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-16 Score=155.27 Aligned_cols=342 Identities=13% Similarity=0.079 Sum_probs=160.8
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
+.|+.++|.++++++ +++.+|..+..++...|++++|.+.|.. .+|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567788888888888 2234888999999999999999888854 2567788888888888899999999
Q ss_pred HhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 044872 87 VFDDIPD--KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR 164 (604)
Q Consensus 87 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 164 (604)
.++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++.|..+|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 7766553 456778889999999999988887774 367778999999999999999999999865
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
..|..|++++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. +.|+. ...++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHH
Confidence 468889999999999999999998883 78889999999999999999966554322 34443 4467788888
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHHHhcCC--------CCcccHHHHHHHHHhCCCH
Q 044872 245 LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK--CGRMAQACKVFREMKD--------KDQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~ 314 (604)
.|.++++..+++..+... +.....++-|.-+|++ -+++.+..+.|..-.. .+...|..+.-.|.+.+++
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999888887665 4567777777777776 4566677777764432 2567899999999999999
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 044872 315 KVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIK 393 (604)
Q Consensus 315 ~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (604)
+.|... |.+. ...-+...|.-++.--....-+-+|..++- . -.|. ..+-|+.++...=+...+.++|+
T Consensus 299 d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~---~~p~--~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 299 DNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---E---FKPL--LLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---H---HCGG--GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---h---cCHH--HHHHHHHHHHhccCcHHHHHHHH
Confidence 988763 4442 122244555555543333333334444433 1 1232 24555555655556666666666
Q ss_pred hC
Q 044872 394 SM 395 (604)
Q Consensus 394 ~~ 395 (604)
+.
T Consensus 368 ~~ 369 (449)
T 1b89_A 368 KV 369 (449)
T ss_dssp HT
T ss_pred Hc
Confidence 65
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-16 Score=160.28 Aligned_cols=383 Identities=11% Similarity=-0.023 Sum_probs=180.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCC-----------C-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC------
Q 044872 65 EFVKTSLLNLYVHCGYLADALKVFDDIP-----------D-KNVVSWTAIISGYINEGNLEEAINMFRRLLHRG------ 126 (604)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 126 (604)
...||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|+..+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3456666666666666666666665421 1 123455566666666666666666665554310
Q ss_pred CCC-ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH---HhcCCHHHHHHHHccCCC---CCc
Q 044872 127 LKP-DSFSIVRVLTACTQ--LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLY---AKCGNMEKARRVFDQMPE---KDI 197 (604)
Q Consensus 127 ~~p-~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~g~~~~A~~~~~~~~~---~~~ 197 (604)
..+ ...++.....++.. .+++++|...|+.+++.. +.++..+..+..++ ...++.++|.+.|++..+ .+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 011 11233333222222 234555555555555543 12333333333332 223344444444433321 222
Q ss_pred chHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 198 VSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 198 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
..+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+.... +..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 333333332222 234444555554444321 122333444444445555555555555544443221 23333333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 352 (604)
...|...+....+ ...... .......+..++|...|++.... .|+ ..++..+...+...|++++|
T Consensus 288 g~~y~~~~~~~~~------~~~~~~------~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 288 GCCYRAKVFQVMN------LRENGM------YGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHH------C------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhh------HHHHHH------HHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHH
Confidence 3333211100000 000000 00001112356788888887763 343 35677778888899999999
Q ss_pred HHHHHHchhhcCCCCch--HHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 353 RQFFNSMSRVFSLTPMI--EHYGCMVD-LLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
...|+...+. ...|.. ..+..+.. .+...|+.++|++.|++. .+.|+...+... .+.+..++++.+
T Consensus 354 ~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHH
Confidence 9999888743 222221 12223332 234678999999998876 666665443322 344567788888
Q ss_pred ccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 429 ALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 429 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
+.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+...+|
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 8999999999999999999999999999999999876554455566
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=157.74 Aligned_cols=231 Identities=9% Similarity=-0.012 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSG 307 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 307 (604)
+...+..+...+...|+++.|...++.+++... .+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345578888899999999999999999998763 3688899999999999999999999998764 457889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGN-----------TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV 376 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 376 (604)
|...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|..+|+.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999988 445432 233457788999999999999999986533223678899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 454 (604)
..|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-16 Score=151.02 Aligned_cols=260 Identities=8% Similarity=-0.073 Sum_probs=186.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMY 277 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 277 (604)
..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344455555555566666666665555432 1234445555555555666666666666555543 22455556666666
Q ss_pred HhcCCHHHHHHHHHhcCCC---CcccHHHH--------------HH-HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 278 AKCGRMAQACKVFREMKDK---DQVVWNAV--------------VS-GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 278 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
...|++++|...|+++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6677777777666665431 22222222 22 3667788999999999998843 2356788888
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKT 417 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 417 (604)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 89999999999999999998854 2335778889999999999999999999987 3334 577899999999999999
Q ss_pred HHHHHHHHHHHccCCC------------CchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 418 DLAEHVLNQLIALEPW------------NSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
++|...++++++..|+ ++..+..++.+|.+.|++++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999998 68899999999999999999999987554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-15 Score=146.14 Aligned_cols=247 Identities=12% Similarity=0.018 Sum_probs=201.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEY--YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCG 281 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 281 (604)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-.|+...+..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456678999999999887644 34543 3445678899999999998875543 23556778888999999999
Q ss_pred CHHHHHHHHHhcC----CC-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044872 282 RMAQACKVFREMK----DK-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 282 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
+.++|.+.|+++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677777899999999999999987 456778888999999999999999999
Q ss_pred HHchhhcCCCCchHH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 357 NSMSRVFSLTPMIEH---YGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 357 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
+.+.+. .|+... ..+++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999864 455321 233445555679999999999998 333477799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHH-HHHHHHHHhhCC
Q 044872 432 PWNSGNYVLLSNIYSASHKWND-AAKIRSMMGDKG 465 (604)
Q Consensus 432 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 465 (604)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 578999887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=151.15 Aligned_cols=381 Identities=10% Similarity=-0.010 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHh-----C--CCC-ChhHHHHHHHHHHhcCChHHHHHHhccCCC-------
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKA-----G--LDC-DEFVKTSLLNLYVHCGYLADALKVFDDIPD------- 93 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------- 93 (604)
....|+.+...+...|+.++|.+.+++.++. + ..| ...+|+.+...|...|++++|...|++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888888899999999999999988663 1 123 345788899999999999999998876431
Q ss_pred C----CcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HhcCCChHHHHHHHHHHHHhCCC
Q 044872 94 K----NVVSWTAIISGYIN--EGNLEEAINMFRRLLHRGLKPDS-FSIVRVLTA---CTQLGDLSTAKWIHGYVNEAGKG 163 (604)
Q Consensus 94 ~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~ 163 (604)
+ ...+++.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.++.+++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 23456555555554 45799999999999885 4543 344443333 445678888999999998876 3
Q ss_pred CChhHHHHHHHHHHh----cCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHH
Q 044872 164 RNVFVATSLVDLYAK----CGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTM 235 (604)
Q Consensus 164 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 235 (604)
.+..++..+...+.. .|++++|.+.+++... .+...|..+...|.+.|++++|+..|++..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 456666666655554 4678899999987643 45668899999999999999999999999875 454 4445
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcccHHHHHHHHHhCC
Q 044872 236 VGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK---DKDQVVWNAVVSGLSMNG 312 (604)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 312 (604)
..+...+...+.... ... ...........+..+.|...|+... ..+..+|..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444444322111100 000 0011111112234567777777654 346778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGN--TFVGLLC-GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
++++|+..|++..+....|... .+..+.. .....|+.++|+..|+...+ +.|+....... ...+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHH
Confidence 9999999999999854333221 2222222 34578999999999998874 45654332222 22333
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 390 ELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 390 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
++++.. ...| +..+|..|...+...|++++|.+.|+++++++|.+|.+..-++
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444433 2233 5668999999999999999999999999999998887766554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-17 Score=171.80 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 044872 65 EFVKTSLLNLYVHCGYLADALKVFDDIP-------DKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRV 137 (604)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 137 (604)
..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CcchHHHHHHHHHhCC
Q 044872 138 LTACTQLGDL-STAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEK-----DIVSWSSMIQGYASNG 211 (604)
Q Consensus 138 l~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 211 (604)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.-+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888877666666665555421 2334445666666655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=142.33 Aligned_cols=261 Identities=13% Similarity=0.007 Sum_probs=194.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHH
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISG 105 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 105 (604)
+...+..+...+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45567778888889999999999999998875 34677888888999999999999999987643 467788899999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 044872 106 YINEGNLEEAINMFRRLLHRGLKPDSFSIVRV--------------LT-ACTQLGDLSTAKWIHGYVNEAGKGRNVFVAT 170 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (604)
|...|++++|++.|+++...... +...+..+ .. .+...|++++|...++.+.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999875322 22223222 22 2667788888888888888775 33677888
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGA 247 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (604)
.+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 888888888888888888887643 345678888888888888888888888877642 2345666677777777777
Q ss_pred hHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044872 248 LELGVWASSFMERNEFLS-----------NPVLGTTLIDMYAKCGRMAQACKVFREM 293 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 293 (604)
++.|...++.+.+..... +..++..+..+|.+.|+.++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777777777776644332 4556666677777777777777666544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=170.03 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=108.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFREMK-------DKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTF 336 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 336 (604)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345688999999999999999999997653 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 337 VGLLCGCTHAGL-VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 337 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
+++|.++++.|. .++|.++|++|.++ |+.||..+|++++....+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999998887 57888999999876 99999999998888777776555555554433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-14 Score=133.18 Aligned_cols=208 Identities=10% Similarity=-0.030 Sum_probs=150.2
Q ss_pred HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-------cccHHHHHHHHHhCC
Q 044872 243 ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-D-------QVVWNAVVSGLSMNG 312 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g 312 (604)
...|+++.|...+..+.+.. .+..++..+...|...|++++|...|++..+ | + ...|..+...|...|
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 33333333333333333333 2344444455555555555555555554432 1 1 356677777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
++++|+..|+++.. ..|+. ..+...|++++|...++.+.. ..| +...+..+...+...|++++|.+.
T Consensus 94 ~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 94 DLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp CHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888888877 44553 245566888999999988874 234 456778888889999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 392 IKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 392 ~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9887 3333 56789999999999999999999999999999999999999999999999999999999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-14 Score=129.34 Aligned_cols=193 Identities=16% Similarity=0.061 Sum_probs=154.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGL 339 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 339 (604)
++++..+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 345667778888899999999999999987653 567888888999999999999999999988 4564 5678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 044872 340 LCGCTHA-----------GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGA 406 (604)
Q Consensus 340 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 406 (604)
..++... |++++|...|+...+. .| +...+..+..+|...|++++|.+.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999998853 45 4678888999999999999999999987 22267889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+...+...|++++|...++++++.+|+++..+..++.++.+.|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-14 Score=131.92 Aligned_cols=234 Identities=9% Similarity=-0.050 Sum_probs=166.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--c----hhHHHH
Q 044872 199 SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS--N----PVLGTT 272 (604)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 272 (604)
.|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+..... + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555556666666666666666665544 455555556666666666666666666655432111 1 466777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDE 351 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 351 (604)
+...|.+.|++++|...|++..+.+.. ...+...|++++|...++++.. ..|+. ..+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 777888888888888888776542211 2345666788899999998887 45543 567778888889999999
Q ss_pred HHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 352 GRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999988854 2335677888889999999999999999887 3334 467889999999999999999999999998
Q ss_pred cC------CCCchhHHHHHH
Q 044872 430 LE------PWNSGNYVLLSN 443 (604)
Q Consensus 430 ~~------p~~~~~~~~l~~ 443 (604)
+. |++...+..+..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 88 777666655544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-13 Score=137.15 Aligned_cols=376 Identities=9% Similarity=-0.001 Sum_probs=208.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHHHHHhccCCCCCcccHHHHHHHHHhCC--
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYL---ADALKVFDDIPDKNVVSWTAIISGYINEG-- 110 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 110 (604)
+...+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4555667889999999999988876 334445566667777877 89999998877667778888877566655
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----
Q 044872 111 ---NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDL---STAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG---- 180 (604)
Q Consensus 111 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 180 (604)
++++|+..|++....|.. ..+..+...+...+.. ..+.+.+......| ++.....|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678899999988886532 2555566555544432 23444455555444 3456666777777777
Q ss_pred CHHHHHHHHccCCCCCcchHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 044872 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNG---FPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSF 257 (604)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 257 (604)
..++|..+++.....++.++..|...|.+.| +.++|++.|++..+.|. ++...+..+...+...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g------------ 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA------------ 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC------------
Confidence 3445555566666666667777777777777 77777777777766552 2333222233333222
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 258 MERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSG-L--SMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 258 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
....+++++|...|++....++..+..+... | ...++.++|+++|++..+.| +..
T Consensus 227 -------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 227 -------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp -------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred -------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 0001455555555555542234445555544 2 34667777777777777665 444
Q ss_pred HHHHHHHHHhccC-----cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 044872 335 TFVGLLCGCTHAG-----LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDEAHELIKSMPMEPNAIVWG 405 (604)
Q Consensus 335 t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 405 (604)
....+...|. .| ++++|...|+... .-+...+..|..+|.. ..++++|.++|++.-..-+.....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 4555555554 44 7788888877665 2245555566666655 347888888887762222334444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHH--HhcCChHHHHHHHHHHhh
Q 044872 406 ALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY--SASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 406 ~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 463 (604)
.|...|.. ..+.++|...++++.+.++.. +...+..+. ...++.++|.++.++-.+
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555542 457888888888888766533 333333333 233455666666655443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=131.56 Aligned_cols=241 Identities=11% Similarity=-0.100 Sum_probs=182.5
Q ss_pred hCCCchHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 044872 209 SNGFPKEALDMFYNMQRENLK--P-EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQ 285 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 285 (604)
..|++++|+..|+++.+.... | +..++..+...+...|+++.|...+..+++... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877765321 1 345566677777788888888888888777643 356778888888999999999
Q ss_pred HHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 044872 286 ACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 286 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 362 (604)
|...|++..+ .+...|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988764 3577888899999999999999999999988 4566555555555667789999999999887754
Q ss_pred cCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 363 FSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 363 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 3677788888899999999887 33332 468888999999999999999999999999997754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 044872 437 NYVLLSNIYSASHKWNDAAKIR 458 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~ 458 (604)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66778889999887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=128.75 Aligned_cols=244 Identities=12% Similarity=0.018 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 044872 168 VATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE--YYTMVGVLSAC 242 (604)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 242 (604)
........|...|++++|...|++..+ .+...|..+...|.+.|++++|++.|++.......|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 444566667777777777777776543 2444677777777777777777777777766321221 12355555556
Q ss_pred HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHH
Q 044872 243 ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
...|+++.|...+..+.+.... +..++..+...|...|++++|...|++..+. +...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554322 3445555555555566666666655555432 23334444412222235555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC---HHHHHHHHHhC-
Q 044872 320 VFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ---LDEAHELIKSM- 395 (604)
Q Consensus 320 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~- 395 (604)
.|+++.+ ..|+ +...+..+...+...|+ +++|...+++.
T Consensus 164 ~~~~a~~--~~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLE--LKPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHH--HSTT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHH--hCcc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5555544 2232 12333333344444443 33344443333
Q ss_pred ---CCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 396 ---PMEPN------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 396 ---~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467777888889999999999999999999999888877776665444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=133.86 Aligned_cols=343 Identities=11% Similarity=0.009 Sum_probs=211.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDL---STAKWIHGYVNEAGKGRNVFVATSLVDLYAK 178 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (604)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...++...+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666778889999999999988765 333444455555667777 8888888888754 45556667775555
Q ss_pred cC-----CHHHHHHHHccCCC-CCcchHHHHHHHHHhCCCchH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchH
Q 044872 179 CG-----NMEKARRVFDQMPE-KDIVSWSSMIQGYASNGFPKE---ALDMFYNMQRENLKPEYYTMVGVLSACASLGALE 249 (604)
Q Consensus 179 ~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (604)
.+ +.++|...|++..+ .+...+..|...|...+..++ +.+.+......|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 55 67888888887654 345578888888887765443 4444544444442 234444555555555443
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCCC---CcccHHHHHHHHHhC----CCHHHHHH
Q 044872 250 LGVWASSFMERNEFLSNPVLGTTLIDMYAKCG---RMAQACKVFREMKDK---DQVVWNAVVSGLSMN----GYVKVAFG 319 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~ 319 (604)
.+........+.-...++..+..|..+|.+.| +.++|...|++..+. +...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 33333222222222234447778888888888 888888888877543 223335566666543 68888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcC-----CHHHHHHH
Q 044872 320 VFGQLEKCGIQPNGNTFVGLLCG-C--THAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSG-----QLDEAHEL 391 (604)
Q Consensus 320 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 391 (604)
+|++.. .| +...+..+... + ...+++++|...|+...+. | +...+..|..+|. .| ++++|.++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 988876 33 33444444444 3 4578899999998887753 3 4556666777776 45 88999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHhh
Q 044872 392 IKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA----SHKWNDAAKIRSMMGD 463 (604)
Q Consensus 392 ~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 463 (604)
|++.- .-+...+..|...|.. ..+.++|...+++..+. .++.+...|+.+|.. ..+.++|...+++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 98887 5566677777766655 34888899988888764 456788888888875 4578888888888888
Q ss_pred CCC
Q 044872 464 KGI 466 (604)
Q Consensus 464 ~~~ 466 (604)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-12 Score=121.16 Aligned_cols=197 Identities=12% Similarity=-0.053 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGC 343 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 343 (604)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777788888888888888887653 356678888888888999999999999888742 23566777888888
Q ss_pred hccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 044872 344 THAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 344 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 420 (604)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999998875 23455 4567778888899999999999999887 3333 567888888889999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
...++++++..|++...+..++.++...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888889999999999999999999999887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-12 Score=117.21 Aligned_cols=197 Identities=13% Similarity=0.014 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
++.++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345566677777777777777777776543 345667777777888888888888888877632 2245677777777
Q ss_pred Hhcc-CcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 044872 343 CTHA-GLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 343 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 418 (604)
+... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888887775 233343 566777778888888888888888776 3333 4667788888888888888
Q ss_pred HHHHHHHHHHccCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 419 LAEHVLNQLIALEP-WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 419 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 78788888888888888888888888887653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-10 Score=123.93 Aligned_cols=418 Identities=9% Similarity=0.032 Sum_probs=270.7
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHH
Q 044872 11 FQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY---LADALKV 87 (604)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 87 (604)
..+.+..|++.+..++ -|..+|..++..+.+.+.++.++.+|+.++.. ++.....|..-+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4456666777776654 38889999999998889999999999999887 56677888888888888888 9999999
Q ss_pred hccCCC-----CCcccHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhc--------
Q 044872 88 FDDIPD-----KNVVSWTAIISGYINEGNL--------EEAINMFRRLLH-RGL-KPDS-FSIVRVLTACTQ-------- 143 (604)
Q Consensus 88 f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~-------- 143 (604)
|++... +++..|...+.-..+.++. +...++|+..+. .|. .|+. ..|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 987543 6777888877765555443 234477777554 465 5543 455555554332
Q ss_pred -CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------cCCHHHHHHHHcc-------CCC--C-----
Q 044872 144 -LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK-------------CGNMEKARRVFDQ-------MPE--K----- 195 (604)
Q Consensus 144 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~-------~~~--~----- 195 (604)
.++++.+..+|..++......-..+|......-.. ..+++.|...+.+ +.. |
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23466788888888753222122333222111100 1123344444433 111 0
Q ss_pred ---------C------cchHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH-
Q 044872 196 ---------D------IVSWSSMIQGYASNGF-------PKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV- 252 (604)
Q Consensus 196 ---------~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~- 252 (604)
+ ...|...+.---.++. .+.+..+|++.+.. .+-+...|.....-+...|+.+.|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 1235555543333321 22345667777664 2335556666666666778888886
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------cccHHHHHHH
Q 044872 253 WASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-------------KD------------QVVWNAVVSG 307 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~ 307 (604)
.+++..+... +.+..++-.++...-+.|+++.|.++|+.+.+ |+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 8888887643 34566677788888888999999988887753 21 2357777777
Q ss_pred HHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCH
Q 044872 308 LSMNGYVKVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTH-AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 385 (604)
..+.|..+.|..+|.+.++. +. +....|......-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCH
Confidence 77788888999999888875 21 122333322222222 345888999998888653 33455667778888888899
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 386 DEAHELIKSM-PMEP----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999886 3223 234788888888888999999999999988888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-12 Score=122.26 Aligned_cols=240 Identities=10% Similarity=-0.073 Sum_probs=154.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 044872 108 NEGNLEEAINMFRRLLHRGLKP---DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEK 184 (604)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (604)
..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3467788888888887653211 34566777777778888888888888887765 3467778888888888888888
Q ss_pred HHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc
Q 044872 185 ARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERN 261 (604)
Q Consensus 185 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 261 (604)
|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|+++.|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887653 35677888888888888888888888888774 354444444444555667777777777666654
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
.. ++...+ .++..+...++.++|...++.....+ ...|..+...|...|++++|...|++... ..|+..
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 249 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF 249 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH
Confidence 32 223333 35556666677777777777665532 34556666666666666666666666665 334321
Q ss_pred HHHHHHHHHhccCcHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
.....++...|++++|.+.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 11123344455555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-11 Score=116.32 Aligned_cols=225 Identities=8% Similarity=-0.116 Sum_probs=133.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS----LGALELGVWASSFMERNEFLSNPVLGT 271 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (604)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44556666666777777777777776666521 23344444444444 455555555555444433
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSM----NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH-- 345 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 345 (604)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444444455555 555666666666555543 44455555555555
Q ss_pred --cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 044872 346 --AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDEAHELIKSMPMEPNAIVWGALLAGCRL----HK 415 (604)
Q Consensus 346 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~ 415 (604)
.+++++|...|+...+. + +...+..+...|.. .+++++|.+.|++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666665542 2 34445555555655 66777777776665111245566666666777 77
Q ss_pred ChHHHHHHHHHHHccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHhhCCC
Q 044872 416 KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA----SHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 466 (604)
++++|...++++.+.+| +..+..++.+|.+ .|++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777777777655 5667777777777 7778888887777776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=122.16 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=136.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345556666777778888888888777654 245677777778888888888888888887742 2255677777778
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 420 (604)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887753 1335667777788888888888888888876 3233 566788888888888888888
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-12 Score=117.20 Aligned_cols=208 Identities=13% Similarity=-0.005 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------------
Confidence 4567777888888888888888888877642 22334444444444444555555554444443321
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
.+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|..+
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334555555666666666666666666655333443 34566666677777777777777
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++++++..|+
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 77776431 224666777788888888888888888876 3333 5567788888888999999999999999999998
Q ss_pred CchhHH
Q 044872 434 NSGNYV 439 (604)
Q Consensus 434 ~~~~~~ 439 (604)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 765543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.9e-12 Score=118.79 Aligned_cols=227 Identities=8% Similarity=-0.046 Sum_probs=174.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcc----hHHHHH
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIV----SWSSMI 204 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 204 (604)
...+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456667778899999999999999999875 34566888899999999999999999988754 2222 488999
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCCH
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLI-DMYAKCGRM 283 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 283 (604)
..|...|++++|++.|++..+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998853 2355788889999999999999999999988763 33566777777 5554 5699
Q ss_pred HHHHHHHHhcCC--C-CcccHHHHHHHHHhCCC---HHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhccCcHH
Q 044872 284 AQACKVFREMKD--K-DQVVWNAVVSGLSMNGY---VKVAFGVFGQLEKCG-IQPNG------NTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 284 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 350 (604)
++|...|+++.+ | +...|..+...+...|+ .++|...|++..+.. -.|+. .++..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998864 3 45667777777777777 778888888877631 11331 34555666666677777
Q ss_pred HHHHHHHHchh
Q 044872 351 EGRQFFNSMSR 361 (604)
Q Consensus 351 ~a~~~~~~~~~ 361 (604)
+|.+.|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776663
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-12 Score=128.08 Aligned_cols=242 Identities=10% Similarity=0.017 Sum_probs=183.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCc-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKP-EYYTMVGVLSACASLGA-LELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
..|+.+...+.+.|++++|++.|++.... .| +...|..+..++...|+ +++|...++.+++.... +..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 45777777788888888888888887764 34 45566677777777775 88888888888776533 5677888888
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCcHH
Q 044872 276 MYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH-AGLVD 350 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~ 350 (604)
+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.| +...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888764 4667888888888888999999999999988 445 45677777777777 55546
Q ss_pred HH-----HHHHHHchhhcCCCCc-hHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 044872 351 EG-----RQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSG--QLDEAHELIKSMPMEP-NAIVWGALLAGCRLHK------ 415 (604)
Q Consensus 351 ~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~------ 415 (604)
+| +..|+...+ +.|+ ...|..+..+|...| ++++|.+.+.++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477777774 3454 667888888888888 6888988888774455 4557888888887763
Q ss_pred --C-hHHHHHHHHHH-HccCCCCchhHHHHHHHHHh
Q 044872 416 --K-TDLAEHVLNQL-IALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 416 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 447 (604)
+ .++|.++++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58899999999 89999888888887776643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-12 Score=117.34 Aligned_cols=193 Identities=13% Similarity=0.022 Sum_probs=104.4
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 044872 95 NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD 174 (604)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (604)
+...|..+...+.+.|++++|+..|++.++... .+...+..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 455566666666777777777777776665421 244556666666666677777776666666654 334556666666
Q ss_pred HHHhc-----------CCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 175 LYAKC-----------GNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 175 ~y~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
+|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666666666655432 234455555666666666666666666655544 44445555555
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
++...|++++|...++.+++... .+..++..+...|.+.|++++|...|++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555432 1344445555555555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-11 Score=115.96 Aligned_cols=229 Identities=11% Similarity=-0.072 Sum_probs=158.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHccCCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQMPEK-DIVSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMVGVL 239 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 239 (604)
++..+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6678888999999999999999999987664 55688889999999 999999999999998875 566666666
Q ss_pred HHHHc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHH
Q 044872 240 SACAS----LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVK 315 (604)
Q Consensus 240 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 315 (604)
..+.. .++.++|...+....+.+ ++..+..+..+|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 66666 777777777777666553 4444444444444400 0045555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHH
Q 044872 316 VAFGVFGQLEKCGIQPNGNTFVGLLCGCTH----AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDE 387 (604)
Q Consensus 316 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 387 (604)
+|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555555543 33444445555555 66677777776666542 134555666667777 777777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCC
Q 044872 388 AHELIKSM-PMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 388 A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~ 434 (604)
|.+.|++. ... +...+..+...+.. .++.++|...++++.+.+|++
T Consensus 205 A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77777766 222 35667777777777 888899999999988888754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=120.97 Aligned_cols=213 Identities=13% Similarity=0.088 Sum_probs=134.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
....|..+...+.+.|++++|+..|+++.+. .|+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 3445666666677777777777777766653 221 2333444455
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 352 (604)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 55555555555555554432 244566666777777777888888887777642 23556677777788888888888
Q ss_pred HHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 353 RQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++.
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887753 2235667788888889999999999998887 3233 5678999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHh
Q 044872 431 EPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~~ 447 (604)
.|+++..+..+..+...
T Consensus 223 ~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CTTCHHHHHHHTC----
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99998887777655443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=130.68 Aligned_cols=195 Identities=14% Similarity=0.037 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCC--------------------HHHHHH
Q 044872 269 LGTTLIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGY--------------------VKVAFG 319 (604)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 319 (604)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555566666666655554432 11 2355566666666666 777777
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHH
Q 044872 320 VFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHE 390 (604)
Q Consensus 320 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 390 (604)
.+.+.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665431 11222 246677777888888888888888877643211222 2367777888889999999988
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHHHHHHHHHhcCChHHHHH
Q 044872 391 LIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 391 ~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776 11122 4477788888899999999999999988754332 4578889999999999999999
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.2e-13 Score=134.06 Aligned_cols=265 Identities=14% Similarity=0.011 Sum_probs=161.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--CC-c----chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPE--KD-I----VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSA 241 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (604)
+..+...+...|++++|...|++..+ ++ . ..|..+...|...|++++|+..|++.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------- 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 33445556666666666666655432 21 1 245555556666666666666665554310
Q ss_pred HHccCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CcccHHHHHHHHHhC
Q 044872 242 CASLGALELGVWASSFMERNE-FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---------DQVVWNAVVSGLSMN 311 (604)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~ 311 (604)
.+.+ ......++..+...|...|++++|...|++..+. ...+|..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 0000 0111233444455555555555555555443321 123455555566666
Q ss_pred CC-----------------HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-
Q 044872 312 GY-----------------VKVAFGVFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM- 368 (604)
Q Consensus 312 g~-----------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 368 (604)
|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|..+++...+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 66666666655431 11121 246666777788888888888888776643111111
Q ss_pred ---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----
Q 044872 369 ---IEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW---- 433 (604)
Q Consensus 369 ---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---- 433 (604)
...+..+...|...|++++|.+.+++. +...+ ..++..+...+...|++++|...++++++..+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 236677778888889999888888766 11111 457778888899999999999999998875432
Q ss_pred --CchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 434 --NSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 434 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...++..++.+|.+.|++++|...+++..+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2347888999999999999999999988763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=112.56 Aligned_cols=207 Identities=12% Similarity=-0.001 Sum_probs=141.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
...|..+...+...|++++|++.|+++.+.. |+ +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHHH
Confidence 3455566666666666666666666655532 21 23344455555
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 044872 277 YAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMN-GYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDE 351 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 351 (604)
|...|++++|...|+++.+ .+...|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 5566666666666655432 2445666677777777 888888888887776333444 4567777778888888888
Q ss_pred HHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 352 GRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PME--PNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888887753 1224667778888888899999999888877 222 356677777777889999999999999999
Q ss_pred ccCCCCchhHHHH
Q 044872 429 ALEPWNSGNYVLL 441 (604)
Q Consensus 429 ~~~p~~~~~~~~l 441 (604)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8899887665544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-12 Score=111.81 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=129.4
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCM 375 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (604)
++..|..+...|.+.|++++|++.|++..+ +.| +..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 345677777777777888888888888777 445 3456777777888888888888888877643 12235566667
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|++.++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77788888888888888776 3334 566888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 044872 454 AAKIRSMMGDKG 465 (604)
Q Consensus 454 A~~~~~~m~~~~ 465 (604)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999987743
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-12 Score=124.42 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=137.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCC--------------------HHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGY--------------------VKVA 317 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 317 (604)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666665432 11 2255666666677777 7777
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHH
Q 044872 318 FGVFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 318 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 388 (604)
++.+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777665431 11222 246667777888899999999988877643211111 23677788889999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHHHHHHHHHhcCChHHH
Q 044872 389 HELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 389 ~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A 454 (604)
.+.+++. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9988876 11122 4477788888999999999999999998765432 34788899999999999999
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=132.38 Aligned_cols=153 Identities=8% Similarity=-0.040 Sum_probs=100.4
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCG-IQPN----GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IE 370 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 370 (604)
+|..+...|...|++++|+..+++..+.. -.++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 45555566666666666666666654310 0111 135666667777777787777777766532111111 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC------CCCch
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALE------PWNSG 436 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~ 436 (604)
++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++. |....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6677778888888888888888766 11122 4477788888999999999999999988653 22345
Q ss_pred hHHHHHHHHHhcCChH
Q 044872 437 NYVLLSNIYSASHKWN 452 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~ 452 (604)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 7778888888888654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=134.03 Aligned_cols=207 Identities=9% Similarity=-0.083 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHH
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRM-AQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQL 324 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 324 (604)
+.+...+....+.. ..+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433322 23566677777778888888 888888877653 34668888888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhc--------CCHH
Q 044872 325 EKCGIQPNGNTFVGLLCGCTHA---------GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRS--------GQLD 386 (604)
Q Consensus 325 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~ 386 (604)
.+ ..|+...+..+..++... |++++|...|+.+.+. .| +...|..+..+|... |+++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88 568878888888888888 9999999999988853 34 467888888889888 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 387 EAHELIKSM-PMEP----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 387 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 4455 67799999999999999999999999999999999999999999999999999999865544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-12 Score=125.19 Aligned_cols=225 Identities=12% Similarity=0.018 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCcccHHHHHHHH
Q 044872 233 YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGR-MAQACKVFREMKD---KDQVVWNAVVSGL 308 (604)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 308 (604)
..+..+...+...|+++.|...++.+++.... +..+++.+..+|.+.|+ +++|...|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45666677788899999999999999987643 67888999999999997 9999999999864 4678899999999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhh-cCCH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGR-SGQL 385 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~ 385 (604)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..|+.+.+. .| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998 556 5578889999999999999999999999853 45 47788899999998 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC-------
Q 044872 386 DEA-----HELIKSM-PMEP-NAIVWGALLAGCRLHK--KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH------- 449 (604)
Q Consensus 386 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 449 (604)
++| ++.|++. .+.| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777766 4455 5669999999898888 689999999998 889999999999999999875
Q ss_pred --ChHHHHHHHHHH-hhC
Q 044872 450 --KWNDAAKIRSMM-GDK 464 (604)
Q Consensus 450 --~~~~A~~~~~~m-~~~ 464 (604)
..++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999998 553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-11 Score=126.31 Aligned_cols=133 Identities=8% Similarity=-0.052 Sum_probs=78.0
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC----chH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-QPN----GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP----MIE 370 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 370 (604)
.|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334444445555555555555554433100 001 12455555666666666666666665543211011 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-------PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
.+..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 5666777777778888877777765 1111 133677788888999999999999999988765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=120.86 Aligned_cols=99 Identities=7% Similarity=-0.008 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AI 402 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 402 (604)
++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4555555666666666666666655432111111 345566667777777777777777665 11111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
++..+...+...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6677777888888888888888888876653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-09 Score=114.03 Aligned_cols=416 Identities=9% Similarity=0.005 Sum_probs=282.7
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCC---hhHHHHHHHH
Q 044872 48 LGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGN---LEEAINMFRR 121 (604)
Q Consensus 48 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 121 (604)
.-...++..+... +.|...|..++..+.+.+.++.++.+|+++.. .....|...+..-.+.++ ++.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444566666665 46899999999999999999999999998764 356678888888888898 9999999999
Q ss_pred HHHCC-CCCChhhHHHHHHHHhcCCCh--------HHHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHH---------hcC
Q 044872 122 LLHRG-LKPDSFSIVRVLTACTQLGDL--------STAKWIHGYVNE-AGK-GRN-VFVATSLVDLYA---------KCG 180 (604)
Q Consensus 122 m~~~g-~~p~~~t~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~---------~~g 180 (604)
.+... ..|+...|..-+......++. +...++|+.++. .|. .++ ..+|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98763 137877777776655444443 345578887765 465 554 468888776544 234
Q ss_pred CHHHHHHHHccCCC-CCc---chHHH---HHHHH----------HhCCCchHHHHHHHHHHH--CCCC------------
Q 044872 181 NMEKARRVFDQMPE-KDI---VSWSS---MIQGY----------ASNGFPKEALDMFYNMQR--ENLK------------ 229 (604)
Q Consensus 181 ~~~~A~~~~~~~~~-~~~---~~~~~---li~~~----------~~~g~~~~A~~~~~~m~~--~g~~------------ 229 (604)
+++.++++|++... |.. ..|.. +...+ -....++.|...+.++.. .++.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 57889999998765 211 23322 21111 001123344555554332 1211
Q ss_pred ---C-----CH---HHHHHHHHHHHccC-------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHH
Q 044872 230 ---P-----EY---YTMVGVLSACASLG-------ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQAC-KVF 290 (604)
Q Consensus 230 ---p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~ 290 (604)
| +. ..|...+.---..+ ..+....+++.++..- +.+..+|-..+..+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 00 12222222211111 1234556777777653 336778888888888899999996 999
Q ss_pred HhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHhcc
Q 044872 291 REMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---------IQPN------------GNTFVGLLCGCTHA 346 (604)
Q Consensus 291 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~ 346 (604)
++... .+...|-..+....+.|++++|.++|+++.... -.|+ ...|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 88754 345567788888889999999999999998631 0142 23577777777888
Q ss_pred CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSG-QLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
|..+.|..+|..+.+.. ..+....|...+.+-.+.| +.+.|.++|+.. ....+...|...+.-....|+.+.|..+
T Consensus 448 ~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999988641 1123344544444444554 589999999987 2223566888888888889999999999
Q ss_pred HHHHHccCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 424 LNQLIALEPW---NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 424 ~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
|+++++..|+ ....|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999988773 445677888888899999999999999987643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=133.57 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=132.2
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCM 375 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 375 (604)
..+|+.+...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|++.|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34677777788888888888888888877 4564 46777788888888888888888888774 3454 6678888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
..+|.+.|++++|.+.|++. .+.| +...|..+...+...|++++|++.|+++++++|+++.++..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888999888888877 4455 456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 044872 454 AAKIRSMMGD 463 (604)
Q Consensus 454 A~~~~~~m~~ 463 (604)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-11 Score=120.45 Aligned_cols=158 Identities=7% Similarity=-0.060 Sum_probs=70.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC------CchhHHH
Q 044872 203 MIQGYASNGFPKEALDMFYNMQREN-LKPE----YYTMVGVLSACASLGALELGVWASSFMERNEFL------SNPVLGT 271 (604)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 271 (604)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+....+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3344555666666666666654420 0111 123444444445555555555554444331000 0123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC----GIQPN-GNTFV 337 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 337 (604)
.+...|...|++++|...|++..+ .+ ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 445555555555555555544331 01 123444455555555555555555544431 11122 23444
Q ss_pred HHHHHHhccCcHHHHHHHHHHch
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.+...+...|++++|...++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444555555555555554433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-10 Score=108.77 Aligned_cols=183 Identities=10% Similarity=0.025 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ccc-cHHHHHHHHHhCCCHHHHHHHHHHH
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQV-VWNAVVSGLSMNGYVKVAFGVFGQL 324 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 324 (604)
++|..+++..++.-.+.+...+..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555421122344555556666666666666666665543 2 222 5566666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC
Q 044872 325 EKCGIQPNGNTFVGLLCGC-THAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-P---MEP 399 (604)
Q Consensus 325 ~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p 399 (604)
.+.. +++...|....... ...|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5532 11222332222221 12466666666666655431 123455556666666666666666666655 1 233
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 400 --NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 400 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
....|..++......|+.+.|..+++++++..|++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 23456666666666666666666666666666654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-11 Score=106.65 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=139.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLC 341 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 341 (604)
++.+|..+...|.+.|++++|...|++..+ .++.+|..+...|.+.|++++|+..+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567888899999999999999999988764 36678888999999999999999999998874 34 4556677777
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.+...++++.+...+....+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999988753 2334677888899999999999999999987 4445 56789999999999999999
Q ss_pred HHHHHHHHHccCCCCc
Q 044872 420 AEHVLNQLIALEPWNS 435 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~ 435 (604)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-10 Score=111.08 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHH
Q 044872 214 KEALDMFYNMQRENLKP-EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPV-LGTTLIDMYAKCGRMAQACKVFR 291 (604)
Q Consensus 214 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 291 (604)
++|..+|++.... +.| +...+..+...+...|+++.|..+++.+++.... +.. ++..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5566666655542 123 2334555555555566666666666666553221 222 66667777777777777777777
Q ss_pred hcCCCCc---ccHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 044872 292 EMKDKDQ---VVWNAVVSG-LSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 292 ~~~~~~~---~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
+..+.++ ..|...... +...|+.++|..+|++..+. .| +...+..++..+...|++++|..+|+...+...++
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 7654322 223222222 11268888888888888773 34 45667777777888888888888888887642345
Q ss_pred Cc--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 367 PM--IEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 367 p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
|+ ...|..++..+.+.|+.++|..+++++
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53 567778888888888888888888776
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-12 Score=122.43 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=121.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc------CC
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRE-------NLKPEYYTMVGVLSACASLGALELGVWASSFMERN------EF 263 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 263 (604)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|+++.|...+..+++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346778888888899999999988888762 11112334555555666666666666666655442 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHH
Q 044872 264 -LSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC------GIQPN-GNT 335 (604)
Q Consensus 264 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 335 (604)
.....++..+...|...|++++|...| +++.+. +-.|+ ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHHH
Confidence 112334444444555555555555444 444331 11121 234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-C---------CCC
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVF-----SLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-P---------MEP 399 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p 399 (604)
+..+...+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.++++ . ..|
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444555555555555555555544320 0012 1234455555566666666666555544 1 111
Q ss_pred C-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 N-------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
. ...+..+...+...+.+..+...+++.....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112222223344555666666777777777777778888888888888888888888887765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-11 Score=120.84 Aligned_cols=225 Identities=9% Similarity=-0.027 Sum_probs=171.5
Q ss_pred HHHHHHccCchHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cccHH
Q 044872 238 VLSACASLGALELGVWASSFMERN----EFLS-NPVLGTTLIDMYAKCGRMAQACKVFREMKD-----KD-----QVVWN 302 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 302 (604)
....+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445667889999999999999764 1111 346788899999999999999998887653 11 34788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCC-chHHHH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRV---FSLTP-MIEHYG 373 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~ 373 (604)
.+...|...|++++|+..|++..+. +-.+. ..++..+...+...|++++|...++...+. .+..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988752 11111 147888889999999999999999987751 12213 356788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PM-----EPN-AIVWGALLAGCRLHKK---TDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
.+...|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ .+.|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8899999999999999999876 11 122 2245666777888888 77777777765 233445567889999
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 044872 444 IYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (604)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=119.90 Aligned_cols=238 Identities=14% Similarity=0.023 Sum_probs=147.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHccCCC--------C---CcchHHHHHHHHHhCCCchHHHHHHHHHHHC------C
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQMPE--------K---DIVSWSSMIQGYASNGFPKEALDMFYNMQRE------N 227 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 227 (604)
+..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 457788999999999999999999988754 1 2346888999999999999999999998763 2
Q ss_pred CCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc
Q 044872 228 LKP-EYYTMVGVLSACASLGALELGVWASSFMERN------EFLS-NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299 (604)
Q Consensus 228 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 299 (604)
-.| ...++..+...+...|+++.|...+..+.+. +..+ ...++..+...|...|++++|...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~---------- 175 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY---------- 175 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH----------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH----------
Confidence 223 3456778888999999999999999888753 1111 233344444555555555555544
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhc------CCC
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKC------GIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVF------SLT 366 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 366 (604)
|+++... +..|+. .++..+...+...|++++|..+++.+.+.. ...
T Consensus 176 ---------------------~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 176 ---------------------YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ---------------------HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ---------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4444332 112222 345555556666666666666666554310 011
Q ss_pred Cc-------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 367 PM-------IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 367 p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
+. ...+..+...+...+.+.+|...++.. ...|+ ..+|..+...|...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 112222333444556666666666666 23343 458888999999999999999999999988774
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-09 Score=107.01 Aligned_cols=258 Identities=14% Similarity=0.031 Sum_probs=159.8
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHcCCC-Cc----hhHHHHHHHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEYY----TMVGVLSACASLGALELGVWASSFMERNEFL-SN----PVLGTTLIDM 276 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~ 276 (604)
.+...|++++|...+++........+.. ++..+...+...|+++.|...+....+.... .+ ......+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 2233334445555666665555554432100 01 1234556666
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C----CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKD-------K----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ--P--NGNTFVGLLC 341 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 341 (604)
|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777765532 1 1134555667778888888888888887653211 1 2346667777
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG-----CMVDLLGRSGQLDEAHELIKSM-PMEPN-----AIVWGALLAG 410 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~ 410 (604)
.+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999999887764311111111121 2334577899999999999887 22221 2356677788
Q ss_pred HHhcCChHHHHHHHHHHHccCCC-----C-chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPW-----N-SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...|++++|...++++++..+. + ...+..++.++...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999988764322 1 23677789999999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=101.86 Aligned_cols=159 Identities=16% Similarity=0.015 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT 344 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 344 (604)
..+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+. .|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~------------- 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP------------- 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC-------------
Confidence 34455555666666666666666665542 3344445555555555555555555555442 12
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
.+...+..+...|...|++++|.+.++++ .. +.+...|..+...+...|++++|..
T Consensus 74 ----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 74 ----------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 12334444455555555555555555554 11 2245566667777777777777777
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 423 VLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.++++++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777888888888888877777765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-10 Score=103.24 Aligned_cols=203 Identities=9% Similarity=0.017 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSG 307 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 307 (604)
|...+......+...|++++|...+..+++....++...+..+...|.+.|++++|...|++..+. +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 556677777788888888888888888888765456666666888888888888888888877542 44577778888
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc---hHHHHHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPN-G-------NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM---IEHYGCMV 376 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 376 (604)
|...|++++|+..|++..+ ..|+ . ..+..+...+...|++++|...|+.+. ...|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 8888888888888888877 3443 3 346666677778888888888888877 34554 45666666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
..|...|+. +++++ .. ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666655543 22222 11 12333343332 33455679999999999999999887777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-10 Score=112.85 Aligned_cols=220 Identities=8% Similarity=-0.043 Sum_probs=134.6
Q ss_pred HccCchHHHHHHHHHHHHcCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cccHHHHHHH
Q 044872 243 ASLGALELGVWASSFMERNEF--L---SNPVLGTTLIDMYAKCGRMAQACKVFREMKD-----KD-----QVVWNAVVSG 307 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 307 (604)
...|+++.|...+..+.+... . ....++..+...|...|+++.|...+++..+ ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344555555555554443210 0 0133455566666666666666666555431 11 2356667777
Q ss_pred HHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCchHHHHHHHHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKC----GIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF---SLTPMIEHYGCMVDLL 379 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~ 379 (604)
|...|++++|++.|++..+. +-.+ ...++..+..++...|++++|...|+...+.. +.+....++..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 77778888887777776542 1111 12456677778888888888888888776411 1122255677777888
Q ss_pred hhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 380 GRSGQLDEAHELIKSM----PM--EPNA-IVWGALLAGCRLHKK---TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
.+.|++++|.+.+++. +. .|.. ..+..+...+...++ .++|...+++. ...|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8888888888888776 11 2222 245555555666777 66666666652 222334456778889999999
Q ss_pred ChHHHHHHHHHHhh
Q 044872 450 KWNDAAKIRSMMGD 463 (604)
Q Consensus 450 ~~~~A~~~~~~m~~ 463 (604)
++++|...+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-10 Score=97.54 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHH
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGL 308 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 308 (604)
...+..+...+...|+++.|...+..+.+... .+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566777888899999999999998876543 3678888999999999999999999998753 3556777777788
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------------- 139 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-------------------------- 139 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------------------------
Confidence 88888888888888877632 223444445555555555555555555544432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 389 HELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.+.+...|..+...+...|++++|...++++++..|+++.
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 1123456666667777777777777777777777666543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=118.25 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=155.5
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNGYV-KVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
++++...++.... .+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666665543 3567888889999999999 999999999998 4564 6789999999999999999999999
Q ss_pred HchhhcCCCCchHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChH
Q 044872 358 SMSRVFSLTPMIEHYGCMVDLLGRS---------GQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH--------KKTD 418 (604)
Q Consensus 358 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------~~~~ 418 (604)
... .+.|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4568888888999999999 9999999999988 4445 567999999999988 9999
Q ss_pred HHHHHHHHHHccCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 419 LAEHVLNQLIALEP---WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 419 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+|...++++++++| +++..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999998743
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=6e-10 Score=103.03 Aligned_cols=187 Identities=15% Similarity=0.002 Sum_probs=101.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLL 340 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 340 (604)
|+..+..+...|.+.|++++|...|++..+ ++...|..+..++...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 345555556666666666666666665432 3444455555566666666666666666665 34433 3455555
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-h-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--H-HHHHHHH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-I-------EHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN--A-IVWGALL 408 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~-~~~~~ll 408 (604)
.++...|++++|...++...+. .|+ . ..|..+...+...|++++|.+.|++. ...|+ . ..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666665542 222 2 23444555555566666666666554 44444 2 2444444
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..+.. .+...++++..+.+.+...|..+ .....|.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 44432 23334455555544443333222 223344559999999988774
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-08 Score=100.55 Aligned_cols=257 Identities=12% Similarity=0.016 Sum_probs=128.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CC----hhHHHHHHH
Q 044872 104 SGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGYVNEAGKG-RN----VFVATSLVD 174 (604)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 174 (604)
..+...|++++|...+++........+.. ++..+...+...|+++.|...+....+.... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655532111111 2333344455556666666666555442110 11 122445556
Q ss_pred HHHhcCCHHHHHHHHccCCC-------C----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 044872 175 LYAKCGNMEKARRVFDQMPE-------K----DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLK--P--EYYTMVGVL 239 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 239 (604)
.|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66666666666666655421 1 0123445556666677777777777666542111 1 123444555
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCc--hhHH-H---HHHHHHHhcCCHHHHHHHHHhcCCCCc-------ccHHHHHH
Q 044872 240 SACASLGALELGVWASSFMERNEFLSN--PVLG-T---TLIDMYAKCGRMAQACKVFREMKDKDQ-------VVWNAVVS 306 (604)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~ 306 (604)
..+...|+++.|...++........++ .... . ..+..+...|++++|...+++....+. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 556666666666666666554311111 1111 1 233446677777777777777665321 12344555
Q ss_pred HHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 307 GLSMNGYVKVAFGVFGQLEKC----GIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666667777776666665431 111111 133333344445555555555554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-09 Score=103.67 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=153.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----C-CchhHHHH
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENL-KPE----YYTMVGVLSACASLGALELGVWASSFMERNEF-----L-SNPVLGTT 272 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 272 (604)
...+...|++++|+..|++...... .+| ..++..+...+...|+++.|...+....+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566666666666666654210 122 23445555566666677666666666554210 1 12445667
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC----GIQPNGNTFVGL 339 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l 339 (604)
+...|...|++++|...|++..+ .+ ..+++.+...|...|++++|+..|++.... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 77778888888888877776543 12 246677788888889999999988887661 222235677888
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCC--C-chHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLT--P-MIEHYGCMVDLLGRSGQ---LDEAHELIKSMPMEPNAI-VWGALLAGCR 412 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~~~ 412 (604)
...+...|++++|..+++...+...-. | ....+..+...|...|+ +.+|...+++.+..|+.. .+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 889999999999999999877542221 2 23456666677888888 899999999876555443 6677888899
Q ss_pred hcCChHHHHHHHHHHHcc
Q 044872 413 LHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~ 430 (604)
..|++++|...++++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=103.80 Aligned_cols=221 Identities=12% Similarity=0.128 Sum_probs=153.6
Q ss_pred HccCchHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CcccHHHH
Q 044872 243 ASLGALELGVWASSFMERN-------EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-------K----DQVVWNAV 304 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 304 (604)
...|+++.|...++..++. ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666542 2233467788899999999999999999987652 1 24578888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCC-chHH
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKC------GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF-----SLTP-MIEH 371 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 371 (604)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++.+.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998763 11233 4677888889999999999999999887531 1123 3567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhcCC------hHHHHHHHHHHHccCCCC
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-P---------MEPN-AIVWGALLAGCRLHKK------TDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~p~~ 434 (604)
+..+...|.+.|++++|.+.+++. . ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788889999999999999999876 1 1222 2244444444443333 222222333222233555
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 435 SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 435 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=96.35 Aligned_cols=204 Identities=10% Similarity=-0.016 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK---D---QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-QPN-GNTFV 337 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 337 (604)
+...+-.+...+.+.|++++|...|+++.+. + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3455555666677777777777777776542 2 34566666777777777777777777776321 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 044872 338 GLLCGCTH--------AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALL 408 (604)
Q Consensus 338 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 408 (604)
.+..++.. .|++++|...|+.+.+.+ |+ .....++.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 777777777777776542 22 11121111111000000 11245667
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHHhc----------CChHHHHHHHHHHhhCCCccCCceeEE
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYSAS----------HKWNDAAKIRSMMGDKGIQKIRGCSWV 475 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~ 475 (604)
..+...|+++.|...++++++..|++ +.++..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 78899999999999999999999984 45788899999877 999999999999987432
Q ss_pred EECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 044872 476 EVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKA 510 (604)
Q Consensus 476 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~ 510 (604)
.+|...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556666666776666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.1e-10 Score=119.08 Aligned_cols=162 Identities=12% Similarity=0.200 Sum_probs=136.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLC 341 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 341 (604)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456778888889999999999999988754 3567888899999999999999999999988 5665 568888889
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~ 418 (604)
++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999988853 554 678889999999999999999999887 55564 568999999999999999
Q ss_pred HHHHHHHHHHccCC
Q 044872 419 LAEHVLNQLIALEP 432 (604)
Q Consensus 419 ~a~~~~~~~~~~~p 432 (604)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999886543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-09 Score=101.69 Aligned_cols=215 Identities=12% Similarity=0.020 Sum_probs=117.1
Q ss_pred CHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 044872 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRE----NLKPE-YYTMVGVLSACASLGALELGVWAS 255 (604)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 255 (604)
++++|...|++. ...|...|++++|++.|.+.... |-.++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477887776653 66778888888888888776542 21111 234555555555555555555555
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCC--
Q 044872 256 SFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMN-GYVKVAFGVFGQLEKCGIQPN-- 332 (604)
Q Consensus 256 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-- 332 (604)
...++. +...|+...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 544331 1111222211 12455566666664 7777777777666542 121
Q ss_pred -----HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 044872 333 -----GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI-----EHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA 401 (604)
Q Consensus 333 -----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 401 (604)
..++..+...+...|++++|...|+...+...-.+.. ..+..+...+...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2345666666777777777777777666431111111 13455566666777777777777666 334432
Q ss_pred H------HHHHHHHHHH--hcCChHHHHHHHHHHHccCCCC
Q 044872 402 I------VWGALLAGCR--LHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 402 ~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
. .+..++.++. ..++++.|...|+++..++|..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 1 2333444443 3455666776666666666644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.6e-09 Score=101.15 Aligned_cols=202 Identities=11% Similarity=-0.021 Sum_probs=145.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----cccHHHHHHHHHhCCCHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-----D----QVVWNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A 317 (604)
++++|...+..+ ...|...|++++|...|++..+- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776654 44677889999888888766431 1 45788899999999999999
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhcc-CcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHH
Q 044872 318 FGVFGQLEKC----GIQPN-GNTFVGLLCGCTHA-GLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 318 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 387 (604)
+..|++..+. |-.+. ..++..+...|... |++++|...|+...+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988662 11111 35788888899996 9999999999988753211111 3567888999999999999
Q ss_pred HHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh-----HHHHHHHHH--hcCCh
Q 044872 388 AHELIKSM-PMEP---NA-----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN-----YVLLSNIYS--ASHKW 451 (604)
Q Consensus 388 A~~~~~~~-~~~p---~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 451 (604)
|.+.|++. ...| .. ..|..+...+...|+++.|...+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 2222 21 156777788999999999999999999999975543 344566664 56778
Q ss_pred HHHHHHHHHHhh
Q 044872 452 NDAAKIRSMMGD 463 (604)
Q Consensus 452 ~~A~~~~~~m~~ 463 (604)
++|...++.+..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888876644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-08 Score=93.99 Aligned_cols=202 Identities=8% Similarity=-0.051 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cccHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFLSN--PVLGTTLIDMYAKCGRMAQACKVFREMKD--KD----QVVWN 302 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~ 302 (604)
+...+......+...|+++.|...+..+++...... ...+..+..+|.+.|++++|...|++..+ |+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 556677778888999999999999999988653321 56778889999999999999999998864 31 24566
Q ss_pred HHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 303 AVVSGLSM--------NGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 303 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
.+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... ....+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 77788888 99999999999999884 45432 11111 111111110 012245
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCch--
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLH----------KKTDLAEHVLNQLIALEPWNSG-- 436 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~-- 436 (604)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5677888999999999999887 22333 34677777777755 8899999999999999998853
Q ss_pred -hHHHHHHHHHhcCChHH
Q 044872 437 -NYVLLSNIYSASHKWND 453 (604)
Q Consensus 437 -~~~~l~~~~~~~g~~~~ 453 (604)
+...+..++.+.|++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 44455666655555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-08 Score=91.87 Aligned_cols=180 Identities=11% Similarity=-0.013 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD--KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG----NTF 336 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 336 (604)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34445566677888888888888888764 32 235667778888888888888888888773 3432 133
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044872 337 VGLLCGCTH------------------AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMPM 397 (604)
Q Consensus 337 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 397 (604)
..+..++.. .|++++|...|+.+.+. .|+ ...+.+... .+......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 333333332 34556666666655532 222 111111100 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 398 EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS---GNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112445668899999999999999999999876 5688999999999999999999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-10 Score=95.73 Aligned_cols=138 Identities=11% Similarity=-0.031 Sum_probs=95.2
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 385 (604)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|++.|+...+. .| +...|..+...|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 3445566666666666544 23332 34455666677777777777777766642 34 356677777777777888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHV-LNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
++|...|++. .+.| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8887777776 4445 456788888888888888766554 588899999998888888888887775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-08 Score=83.63 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=77.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHK 415 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~ 415 (604)
.+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444445555555555544432 1 123344445555555566666666666554 11 224556666777777777
Q ss_pred ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 416 KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++++|...++++++..|.++..+..++.+|.+.|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888877777777777777888888888888888888777653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=95.56 Aligned_cols=196 Identities=12% Similarity=-0.011 Sum_probs=111.0
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----
Q 044872 235 MVGVLSACASLGALELGVWASSFMERN------EF-LSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-------K---- 296 (604)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---- 296 (604)
+..+...+...|+++.|...+..+++. +- .....++..+...|...|++++|...|++..+ +
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334444444444444444444444332 11 11234555566666666666666666655432 1
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhc------
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC------GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF------ 363 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------ 363 (604)
...+|..+...|...|++++|+..|+++.+. +-.|+ ..++..+...+...|++++|..+++.+.+..
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2345666777777888888888888777663 11343 3567778888888899999988888776421
Q ss_pred CCCCc-hHHHHHHHHHHhh------cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 364 SLTPM-IEHYGCMVDLLGR------SGQLDEAHELIKSMP-MEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
...+. ...+..+...+.. ...+.++...++... ..|+ ..++..+...+...|++++|...++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 2233333333332 233455555555553 2333 347888889999999999999999998865
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=7.2e-08 Score=91.29 Aligned_cols=239 Identities=10% Similarity=0.040 Sum_probs=145.5
Q ss_pred HhcCCHHHHHHHHccCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 044872 177 AKCGNMEKARRVFDQMPEKDIV-SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWAS 255 (604)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 255 (604)
.-.|++..+..-..++...+.. .-.-+.++|...|++... ..-.|....+..+.. +...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHHH
Confidence 3446666666654444332222 222234666666665531 011233222222222 22222 44555
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 044872 256 SFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ 330 (604)
Q Consensus 256 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 330 (604)
+..+..+ .++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 5554443 334444457777888888888888888876432 345666777888889999999999998887 56
Q ss_pred C-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 044872 331 P-----NGNTFVGLLCG--CTHAG--LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM--- 397 (604)
Q Consensus 331 p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--- 397 (604)
| +..+...+..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 35566666655 33334 888889999988754 344333334444788889999998888765 21
Q ss_pred -------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 398 -------EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 398 -------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.| |+.+...++......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 44466566666666676 7888999999999988643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-08 Score=90.74 Aligned_cols=239 Identities=6% Similarity=-0.037 Sum_probs=163.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMA 284 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 284 (604)
.-..-.|.+..++.-...+. ... +.....-+.+++...|..... ..-.|.......+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~--~~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS--KVT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS--CCC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC--ccc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 34455688888877433221 112 223333455666666665421 112233334443333 33333
Q ss_pred HHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 285 QACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 285 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777887664 3455566777889999999999999999877554334 4567778889999999999999999998
Q ss_pred hhcCCCC-----chHHHHHHHHH--Hhh--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 361 RVFSLTP-----MIEHYGCMVDL--LGR--SGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 361 ~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
+. .| +..+...|..+ ... .+++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 66 34455555544 233 34999999999999 44466334344555889999999999999988876
Q ss_pred ----------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 431 ----------EPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 431 ----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+|+++.++..++.+....|+ +|.+++.++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58899999888888888897 8999999998753
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-08 Score=95.79 Aligned_cols=175 Identities=9% Similarity=-0.018 Sum_probs=137.3
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 044872 284 AQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 284 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 362 (604)
+.....+......+...+..+...+.+.|++++|+..|++..+ ..| +...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444444444455666777788889999999999999988 456 4567788888999999999999999988743
Q ss_pred cCCCCchHHHHHHH-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--chh
Q 044872 363 FSLTPMIEHYGCMV-DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN--SGN 437 (604)
Q Consensus 363 ~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 437 (604)
.|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 45544333322 3466778888888888776 3345 56789999999999999999999999999999987 789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+..++.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-08 Score=80.78 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=102.2
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLL 379 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 379 (604)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777888888888888888887643 235567777778888888889998888888753 133466777788888
Q ss_pred hhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 380 GRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999988877 223 35678888888899999999999999999988875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-09 Score=113.27 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=133.5
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 044872 278 AKCGRMAQACKVFREMK--------D---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH 345 (604)
Q Consensus 278 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 345 (604)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 66788888988888775 2 3556788888888899999999999999887 345 45677788888889
Q ss_pred cCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
.|++++|...|+.+.+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988753 45 46778888888999999998 8888877 4445 45688888889999999999999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 423 VLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
.++++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999988899999999877665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-08 Score=86.98 Aligned_cols=157 Identities=13% Similarity=0.010 Sum_probs=99.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH-H
Q 044872 302 NAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL-L 379 (604)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~ 379 (604)
..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|++++|...++.+.+. .|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3344455556666666666655544 233 2344555555666666666666666655532 2222222211111 1
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--chhHHHHHHHHHhcCChHHHH
Q 044872 380 GRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN--SGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 455 (604)
...+...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223356666655 3345 46788889999999999999999999999999875 558999999999999999999
Q ss_pred HHHHHHhh
Q 044872 456 KIRSMMGD 463 (604)
Q Consensus 456 ~~~~~m~~ 463 (604)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-08 Score=84.51 Aligned_cols=102 Identities=10% Similarity=-0.007 Sum_probs=91.0
Q ss_pred CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 364 SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55664 556777888899999999999999988 4455 57799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
++.+|.+.|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-06 Score=88.04 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=63.3
Q ss_pred hcC-CchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hHHH
Q 044872 7 SND-CFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY-LADA 84 (604)
Q Consensus 7 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 84 (604)
+.| +.+.|..+|+.+... -|. ++.+.+.++|+..+.. .|+..+|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377778888877663 233 7899999999988774 4688888888877766653 3445
Q ss_pred HHHhccCC------CCCcccHHHHHHHHH----hCCChhHHHHHHHHHHH
Q 044872 85 LKVFDDIP------DKNVVSWTAIISGYI----NEGNLEEAINMFRRLLH 124 (604)
Q Consensus 85 ~~~f~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 124 (604)
..+|+... ..+...|...+..+. .+++.+.+..+|++.+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 55665432 135567777776543 23567778888888876
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.1e-09 Score=88.34 Aligned_cols=123 Identities=12% Similarity=0.007 Sum_probs=101.9
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHK 415 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 415 (604)
|...+...|++++|+..++... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999999876 33454 345567889999999999999999988 5555 5679999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHhhC
Q 044872 416 KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKI-RSMMGDK 464 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 464 (604)
++++|...|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 4777663
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-07 Score=84.38 Aligned_cols=162 Identities=10% Similarity=-0.051 Sum_probs=120.1
Q ss_pred CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHchhhcCCCCchHH
Q 044872 296 KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAG----LVDEGRQFFNSMSRVFSLTPMIEH 371 (604)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 371 (604)
.++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|+...+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355566666666666777777777777777654 44555556666666 5 788888888877642 24556
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHH
Q 044872 372 YGCMVDLLGR----SGQLDEAHELIKSM-PMEPN---AIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 372 ~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
+..|..+|.. .+++++|.++|++. ...|+ ...+..|...|.. .++.++|...++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6667777766 78888888888887 43443 6778888888877 78999999999999888 66778899
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHhhCCC
Q 044872 440 LLSNIYSAS-H-----KWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 440 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 466 (604)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.7e-08 Score=102.10 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=122.5
Q ss_pred cCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044872 280 CGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
.|++++|.+.|++..+. +...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988753 467888899999999999999999999988 4554 57888888999999999999999
Q ss_pred HHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHc
Q 044872 356 FNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH---KKTDLAEHVLNQLIA 429 (604)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 429 (604)
++...+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998854 34 4678888999999999999999999987 4344 566888899999999 999999999999999
Q ss_pred cCCCCchhHHHHH
Q 044872 430 LEPWNSGNYVLLS 442 (604)
Q Consensus 430 ~~p~~~~~~~~l~ 442 (604)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-08 Score=82.59 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=87.9
Q ss_pred CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 364 SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34453 556677788899999999999999887 3344 67789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-07 Score=88.65 Aligned_cols=220 Identities=12% Similarity=-0.007 Sum_probs=150.7
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044872 210 NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKV 289 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 289 (604)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888998888776531 111 0 11135666666665543 4567778888888887
Q ss_pred HHhcCCC-----C----cccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHHH
Q 044872 290 FREMKDK-----D----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---IQPN--GNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 290 ~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7765431 1 3467788888999999999999998876521 1122 3567778888888 999999999
Q ss_pred HHHchhhcCCCC----chHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 044872 356 FNSMSRVFSLTP----MIEHYGCMVDLLGRSGQLDEAHELIKSM-P---MEPN----AIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 356 ~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
|+...+.+.-.. ...++..+...|.+.|++++|.+.|++. . ..++ ...+..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998765321111 1456788889999999999999999877 1 1122 22566667778888999999999
Q ss_pred HHHHHccCCCCchh-----HHHHHHHHHhcCChHHHHHH
Q 044872 424 LNQLIALEPWNSGN-----YVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 424 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 457 (604)
+++.+ +.|..... ...++..+ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88875432 33455555 56776666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-07 Score=84.45 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=94.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhh
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGR 381 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 381 (604)
+...|...|++++|+..|++..+ ..| +...+..+..++...|++++|...|+.+.+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 77888899999999999999988 456 4567888888999999999999999998853 45 46778888877766
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 382 SGQ--LDEAHELIKSMPMEPNA--IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 382 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.|. .+.+...++... .|+. ..|..+..++...|++++|...|++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 554 445666666663 3333 344555666777899999999999999999964
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=100.46 Aligned_cols=188 Identities=12% Similarity=0.037 Sum_probs=144.2
Q ss_pred HccCchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhC
Q 044872 243 ASLGALELGVWASSFME--------RNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMN 311 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 311 (604)
...|++++|...++.+. +.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 322 33567778888899999999999999998864 3667888888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHH
Q 044872 312 GYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 312 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 389 (604)
|++++|++.|++..+ ..|+ ...+..+..++...|++++ .+.|+.+.+. .| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988 4564 4678888889999999999 9999988853 45 4678888999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHhcCC-----hHHHHHHHHHHHccCCCCchh
Q 044872 390 ELIKSM-PMEPNA-IVWGALLAGCRLHKK-----TDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 390 ~~~~~~-~~~p~~-~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 437 (604)
+.|++. ...|+. ..|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999998 667764 477777777766555 344445555555555554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=77.83 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=68.4
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH
Q 044872 365 LTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL 441 (604)
Q Consensus 365 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (604)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 345555666677777777777777665 3333 455677777777777777777777777777777777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHhh
Q 044872 442 SNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-07 Score=81.94 Aligned_cols=125 Identities=11% Similarity=0.010 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRL 413 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 413 (604)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3444556667778888887777653 456677777778888888888888888776 3333 56688888888889
Q ss_pred cCChHHHHHHHHHHHccCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 414 HKKTDLAEHVLNQLIALEPWNS----------------GNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.|++++|...++++++..|.+. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988887766 788899999999999999999999988754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=98.64 Aligned_cols=144 Identities=10% Similarity=-0.034 Sum_probs=82.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
|++++|...++.+.+... .+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566667777666655432 2455666677777777777777777776654 234566666677777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 044872 323 QLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRS---GQLDEAHELIKSM 395 (604)
Q Consensus 323 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 395 (604)
+..+. .| +...+..+..++...|++++|.+.++...+. .| +...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77663 34 3456666666777777777777777766643 23 355566666677777 7777777777665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-07 Score=83.00 Aligned_cols=184 Identities=12% Similarity=0.023 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-c---cHHH
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERNEFLS--NPVLGTTLIDMYAKCGRMAQACKVFREMKD--KDQ-V---VWNA 303 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~ 303 (604)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+. . ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777889999999999999998865332 245677789999999999999999999864 322 1 3444
Q ss_pred HHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 044872 304 VVSGLSM------------------NGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFS 364 (604)
Q Consensus 304 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 364 (604)
+..++.. .|+.++|+..|+++.+ ..|+.. ...... ..+ .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~l~------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----RLV------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----HHH------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----HHH------HHHHHHH----
Confidence 5555543 6789999999999998 456543 211111 000 0111111
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 365 LTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 365 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.....+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11234567888999999999999987 333432 46888889999999999999999999988887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=77.77 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=92.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+......+.+.|++++|++.|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45543 45666777888888888888888887743 34 4677888888888999999999988877 4444 56689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
..+..++...|++++|.+.|+++++++|+++.++..|.+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999998888777653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-06 Score=81.94 Aligned_cols=160 Identities=8% Similarity=-0.099 Sum_probs=115.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHH
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCG-IQPNGN----TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGC 374 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 374 (604)
.+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556777888888888888877632 122321 2334556667778888998888887753122222 236788
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-----C--CC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-----P--ME-PN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYV 439 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-----~--~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 439 (604)
+...|...|++++|.+.|+++ . .. |. ..+|..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888889999999988888776 1 11 22 2377888889999999999999999998754322 56889
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHhh
Q 044872 440 LLSNIYSASHK-WNDAAKIRSMMGD 463 (604)
Q Consensus 440 ~l~~~~~~~g~-~~~A~~~~~~m~~ 463 (604)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-07 Score=77.43 Aligned_cols=101 Identities=10% Similarity=-0.051 Sum_probs=87.1
Q ss_pred CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 364 SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34453 455666778888999999999999887 3344 66789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++.+|...|++++|.+.+++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.8e-07 Score=85.85 Aligned_cols=164 Identities=7% Similarity=-0.102 Sum_probs=119.1
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHchhhcC--CCCc--hH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-G----NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS--LTPM--IE 370 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 370 (604)
.+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677788889999888888777432211 1 1233455566778899999999887764211 1121 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------Cc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM----PMEPN-----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW------NS 435 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 435 (604)
.++.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999988776 11222 257888889999999999999999999875432 14
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 044872 436 GNYVLLSNIYSASHKWNDA-AKIRSMMGD 463 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 463 (604)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=83.87 Aligned_cols=155 Identities=13% Similarity=0.034 Sum_probs=114.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVG----------------LLCGCTHAGLVDEGRQFFNSMSRVFSLTP 367 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 367 (604)
...+...|++++|+..|++..+ ..|+. ..+.. +..++...|++++|...|+...+. .|
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p 85 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---AP 85 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC
Confidence 3455677778888888877776 44543 34445 778899999999999999998854 45
Q ss_pred -chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 368 -MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKK--TDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 368 -~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
+...+..+..+|...|++++|.+.|++. ...| +..+|..+...+...|+ .+.+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 5778889999999999999999999988 4455 46688888888765553 44555666665543332 23556678
Q ss_pred HHHHhcCChHHHHHHHHHHhhCC
Q 044872 443 NIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.++...|++++|...+++..+..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888999999999999998743
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-07 Score=79.68 Aligned_cols=154 Identities=14% Similarity=0.014 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH-Hhc
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTA-CTQ 143 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 143 (604)
...+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..... |+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 33445566677777777777777654 355667777777777777777777777765542 333222211111 112
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CC---cchHHHHHHHHHhCCCchHHHH
Q 044872 144 LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KD---IVSWSSMIQGYASNGFPKEALD 218 (604)
Q Consensus 144 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~ 218 (604)
.++...+...++..++.. +.+...+..+...|...|++++|...|+++.+ |+ ...|..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122234566777777654 33567777888888888888888888877654 22 3477788888888888888888
Q ss_pred HHHHHH
Q 044872 219 MFYNMQ 224 (604)
Q Consensus 219 ~~~~m~ 224 (604)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-06 Score=77.18 Aligned_cols=171 Identities=11% Similarity=-0.071 Sum_probs=118.6
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CcccHHHHHHHHHhCC----CHHHHHHHHHHHHH
Q 044872 252 VWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-DQVVWNAVVSGLSMNG----YVKVAFGVFGQLEK 326 (604)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 326 (604)
.+.+....+.| ++..+..|..+|...+++++|...|++..+. ++.++..+...|.. + +.++|+++|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 33444444443 5556666666777777777777777766543 55666666666666 5 78888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCc---hHHHHHHHHHHhh----cCCHHHHHHHHHhC
Q 044872 327 CGIQPNGNTFVGLLCGCTH----AGLVDEGRQFFNSMSRVFSLTPM---IEHYGCMVDLLGR----SGQLDEAHELIKSM 395 (604)
Q Consensus 327 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~ 395 (604)
.| +...+..+...+.. .+++++|..+|+...+. .|. ...+..|..+|.. .+++++|.++|++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 55 45566666666766 77888898888887742 342 5677778888877 78899999999887
Q ss_pred -CCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHccCC
Q 044872 396 -PMEPNAIVWGALLAGCRLH-K-----KTDLAEHVLNQLIALEP 432 (604)
Q Consensus 396 -~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~p 432 (604)
...++...+..|...|... | +.++|...++++.+.++
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3334555667777776543 2 89999999999887754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-06 Score=79.43 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC----
Q 044872 312 GYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVD--EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ---- 384 (604)
Q Consensus 312 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 384 (604)
+++++++++++++.+. .| |...+..-.-...+.|.++ ++.++++.+.+.. .-+...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 4445555555555542 22 3334443333334444444 5555555554320 1123334333333444443
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHccC---CCCchhHHHHHHHHHhcCChHHHHH
Q 044872 385 --LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKT-DLAEHVLNQLIALE---PWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 385 --~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
++++++.++++ ...| |...|+-+...+.+.|+. +......+++.+++ |.++.++..++++|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55666666554 2223 555666666666666553 33444555555554 6666677777777777777777777
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-07 Score=88.96 Aligned_cols=197 Identities=11% Similarity=-0.041 Sum_probs=148.0
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHH
Q 044872 244 SLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQ 323 (604)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 323 (604)
..|++++|..+++...+.... . .+...++++.|...|... ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 356788888888887664211 1 111158899998887763 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC--CCc--hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044872 324 LEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL--TPM--IEHYGCMVDLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 324 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (604)
..+. |-.+. ..+|..+...|...|++++|...|+...+.+.- .|. ..++..+...|.+ |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8652 21111 347888888999999999999999977643211 121 4567788889988 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc------hhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 395 M-PME---PN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS------GNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 395 ~-~~~---p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
. .+. .+ ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 34788888999999999999999999998765432 3667788888999999999999999
Q ss_pred Hh
Q 044872 461 MG 462 (604)
Q Consensus 461 m~ 462 (604)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9.1e-07 Score=72.02 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGC 411 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 411 (604)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|..+++++ ... .+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455556666667777777777777666431 234556667777777788888888777776 222 3566788888888
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
...|+++.|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999989988888888888776544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=75.92 Aligned_cols=127 Identities=9% Similarity=-0.033 Sum_probs=95.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455556666777777777777776643 1224566777777788888888888888776 3333 5668888888999
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHH--HHHHhcCChHHHHHHHHHHhh
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLS--NIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..|++++|...++++++..|.+...+..+. ..+...|++++|.+.+....+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999887775544 448888999999999887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-06 Score=80.68 Aligned_cols=162 Identities=11% Similarity=0.012 Sum_probs=107.0
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHH-HHHH
Q 044872 129 PDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWS-SMIQ 205 (604)
Q Consensus 129 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~ 205 (604)
.+...+..+...+...|+++.|...++.+++.. +.+...+..|...|.+.|++++|...|+++.. |+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344556667777788889999999888888875 34667788888889999999999999988875 4332222 2223
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS-NPVLGTTLIDMYAKCGRMA 284 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 284 (604)
.+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++..... +...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 4666777888888888777642 2244555566666666666666666666666654322 2445555666666666665
Q ss_pred HHHHHHHh
Q 044872 285 QACKVFRE 292 (604)
Q Consensus 285 ~A~~~~~~ 292 (604)
+|...|++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 55555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-06 Score=77.48 Aligned_cols=144 Identities=9% Similarity=-0.072 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 350 (604)
..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455666777778888877777776677777777777777777777777777776632 223456666666666777777
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+|...|+...+...-.+... +...| +...|+ ...|..+...+...|+++.|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777766654211111000 00000 012333 34777888888899999999999999999
Q ss_pred cCCCC
Q 044872 430 LEPWN 434 (604)
Q Consensus 430 ~~p~~ 434 (604)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-06 Score=72.36 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGC 411 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 411 (604)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666677777777777777777643 1234566777777788888888888888776 3333 466888888889
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCCh
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 451 (604)
...|+++.|...++++++..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988999999999888875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=88.47 Aligned_cols=126 Identities=10% Similarity=-0.039 Sum_probs=97.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----------------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----------------IEHYGCMVDLLGRSGQLDEAHELIKSM-PM 397 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 397 (604)
.+..+...+...|++++|...|+...+. .|+ ...|..+...|.+.|++++|.+.+++. ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444445555555555555555555432 122 467788888999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 044872 398 EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA-AKIRSMMGD 463 (604)
Q Consensus 398 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 463 (604)
.| +...|..+..++...|++++|...|+++++++|++..++..++.++.+.|++++| ..+++.|.+
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5678999999999999999999999999999999999999999999999999999 456666643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-05 Score=78.09 Aligned_cols=336 Identities=10% Similarity=-0.040 Sum_probs=191.2
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC-hHHHHHHHHHHHHh-CCCC-ChhHHHHHHHHHH----hcCCh
Q 044872 9 DCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHD-FQLGVRSHSLIVKA-GLDC-DEFVKTSLLNLYV----HCGYL 81 (604)
Q Consensus 9 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~~~-~~~~~~~li~~~~----~~g~~ 81 (604)
|+++.+..+|++.+.. .|+...|...+.-..+.++ .+....+|+.++.. |..+ +..+|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999874 4788888888887766653 45677888888775 4333 5677888777654 24678
Q ss_pred HHHHHHhccCCC-C--Cc-ccHHHHHHHHH-------------hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 044872 82 ADALKVFDDIPD-K--NV-VSWTAIISGYI-------------NEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQL 144 (604)
Q Consensus 82 ~~A~~~f~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 144 (604)
+.++++|++... | +. ..|......-. ..+.+..|..+++.+...-...+...|...+.--...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999987643 2 11 12222211100 0112223344444333210001222344333332221
Q ss_pred --CC-----hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC-CCc-chHHHHHHHHHhCCCchH
Q 044872 145 --GD-----LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE-KDI-VSWSSMIQGYASNGFPKE 215 (604)
Q Consensus 145 --g~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~ 215 (604)
+- .+.+..+++.++... +.+..+|...+..+.+.|+.+.|..+|++... |+. ..|. .|+...+.++
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~ 260 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEA 260 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTH
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhH
Confidence 11 234567888877754 44577787788888888888888888876533 222 2222 2333222222
Q ss_pred HHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-C
Q 044872 216 ALDMFYNMQRE---------NLKP---EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCG-R 282 (604)
Q Consensus 216 A~~~~~~m~~~---------g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~ 282 (604)
. ++.+.+. +..+ ....|...+....+.+..+.|+.+++.+ +.. ..+..+|.....+-.+++ +
T Consensus 261 ~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 261 V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCC
T ss_pred H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCC
Confidence 2 2222211 0011 1133444555555667788888888888 322 223344443333333333 5
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 359 (604)
.+.|..+|+...+ .++..|...+.-....|+.+.|..+|+++. .....+...+.--...|+.+.+..+++..
T Consensus 336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887643 234456666666677788888888888862 23455666666556678888888888776
Q ss_pred hh
Q 044872 360 SR 361 (604)
Q Consensus 360 ~~ 361 (604)
.+
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=72.31 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAG 410 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 410 (604)
..+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4555555566666666666666666553 223 3555666666667777777777776665 2223 45677777788
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888776653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-07 Score=88.44 Aligned_cols=190 Identities=7% Similarity=-0.083 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCG 342 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 342 (604)
...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++..+ ..| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34455566666667777777777766542 2455666677777777777777777777766 344 34566666677
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCch-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMI-EHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
+...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.+.|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 77777777777777766532 1211 011111111111111111111 2222222333333333 333 268899999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHhhC
Q 044872 422 HVLNQLIALEPWNSGNYVLLSNIYSAS-HKWNDAAKIRSMMGDK 464 (604)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 464 (604)
+.++++++.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7799999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.4e-05 Score=71.76 Aligned_cols=227 Identities=10% Similarity=0.018 Sum_probs=159.1
Q ss_pred CCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---
Q 044872 211 GFPKEALDMFYNMQRENLKPEYY-TMVGVLSACASLG--ALELGVWASSFMERNEFLSNPVLGTTLIDMY----AKC--- 280 (604)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 280 (604)
...++|++++.+++.. .|+.. .++.--.++...+ +++++...++.++..... +..+++.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3345777777777663 45433 3444445555566 777777777777765533 334444333333 444
Q ss_pred CCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------H
Q 044872 281 GRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVK--VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL------V 349 (604)
Q Consensus 281 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 349 (604)
++++++..+++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+... -|...+..-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 788899999988865 45667777777777888888 99999999998542 255666655555566665 8
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE-AHELIKSM-PM----EPNAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
+++.+.++.+... -+-|...|+.+-.++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999988853 23357788888888888888544 55677766 22 24677899999999999999999999
Q ss_pred HHHHHc-cCCCCchhHHHHHH
Q 044872 424 LNQLIA-LEPWNSGNYVLLSN 443 (604)
Q Consensus 424 ~~~~~~-~~p~~~~~~~~l~~ 443 (604)
++.+.+ .+|.....|...++
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999996 79987777665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=72.11 Aligned_cols=96 Identities=15% Similarity=0.001 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888999998888877 3334 56788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.1e-07 Score=78.85 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=82.3
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--HH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAG-CRLHKKT--DL 419 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~~--~~ 419 (604)
..|++++|...++...+.. +.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4556666666666655421 223556666667777777777777777665 2223 45567777777 6678887 88
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|...++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-05 Score=74.39 Aligned_cols=158 Identities=8% Similarity=-0.031 Sum_probs=118.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCc--------c-cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQ--------V-VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ-PN----GNTFVG 338 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~--------~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 338 (604)
.+..+...|++++|...+++..+... . .+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988754211 1 2334566677788999999999999874222 22 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhc----CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVF----SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPN-AIVWG 405 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 405 (604)
+..+|...|++++|..+|+.+.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999887421 11222 346788889999999999999998876 22233 55888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHcc
Q 044872 406 ALLAGCRLHKK-TDLAEHVLNQLIAL 430 (604)
Q Consensus 406 ~ll~~~~~~~~-~~~a~~~~~~~~~~ 430 (604)
.+...+...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 69999999998753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-06 Score=78.84 Aligned_cols=182 Identities=12% Similarity=-0.006 Sum_probs=125.2
Q ss_pred hcCCHHHHHHHHHhcCCC---CcccHHHH-------HHHHHhCCCHHHHHHHHHHHHHCCCCCCH---------------
Q 044872 279 KCGRMAQACKVFREMKDK---DQVVWNAV-------VSGLSMNGYVKVAFGVFGQLEKCGIQPNG--------------- 333 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~~---~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 333 (604)
..++.+.|.+.|.++..- ....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467777777777776542 34566666 3444444444555544444333 33321
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 044872 334 -------NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNA----I 402 (604)
Q Consensus 334 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 402 (604)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455667788999999999988874 2454335555666888999999999999877433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALE--PW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.+..+..++...|++++|+..|++...-. |. .+.....++.++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67777888999999999999999987533 54 44577889999999999999999999998743
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-06 Score=82.31 Aligned_cols=135 Identities=10% Similarity=-0.079 Sum_probs=99.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc--hHHHHHHHHHHh
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM--IEHYGCMVDLLG 380 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 380 (604)
.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3556677788888888888887663 365544455555788889999999999855431 1 221 235667788899
Q ss_pred hcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 381 RSGQLDEAHELIKSM---PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
+.|++++|++.|++. +..|. ...+.....++...|+.++|...|+++.+.+|+ ......|.
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999987 22253 336777788899999999999999999999997 66555553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=69.20 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CchhHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW--NSGNYVLLSNI 444 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 444 (604)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777788888888888888876 3233 5668888888999999999999999999999999 88999999999
Q ss_pred HHhc-CChHHHHHHHHHHhhCCC
Q 044872 445 YSAS-HKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 445 ~~~~-g~~~~A~~~~~~m~~~~~ 466 (604)
|.+. |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999987543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.8e-06 Score=77.68 Aligned_cols=160 Identities=8% Similarity=-0.055 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---Cc------ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKDK---DQ------VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI---QPN--GNT 335 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 335 (604)
+...+..+...|++++|.+.+....+. .. ..+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566778888999988888754321 11 1233455567788899999999998875321 122 347
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CCC-HH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-----IEHYGCMVDLLGRSGQLDEAHELIKSM-PM------EPN-AI 402 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p~-~~ 402 (604)
+..+...|...|++++|..+|+.+.+.....|+ ..++..+...|.+.|++++|.+.+++. .+ ... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888999999999999999987732111222 257788889999999999999998876 11 111 55
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHHHc
Q 044872 403 VWGALLAGCRLHKKTDLA-EHVLNQLIA 429 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 429 (604)
+|..+...+...|++++| ...++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788888899999999999 777888765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=71.36 Aligned_cols=94 Identities=19% Similarity=0.048 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445667788999999999999888 4445 66789999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCC
Q 044872 450 KWNDAAKIRSMMGDKG 465 (604)
Q Consensus 450 ~~~~A~~~~~~m~~~~ 465 (604)
++++|...+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999987643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=9.9e-07 Score=90.89 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=88.3
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 418 (604)
.+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345567777777777766643 33 3666777778888888888888888776 4445 4668888999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHH--HHhcCChHHHHHHHHH
Q 044872 419 LAEHVLNQLIALEPWNSGNYVLLSNI--YSASHKWNDAAKIRSM 460 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 460 (604)
+|.+.++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999999884
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=70.57 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=84.0
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34667777788888888888888888876 3334 567888888899999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-06 Score=74.06 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666677777788888888887776 3334 56678888888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888888888763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-06 Score=67.16 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555566666666666666655 2222 455666666666666777777777777666666666666667777777
Q ss_pred cCChHHHHHHHHHHhhC
Q 044872 448 SHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 448 ~g~~~~A~~~~~~m~~~ 464 (604)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777776666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.3e-07 Score=75.78 Aligned_cols=108 Identities=12% Similarity=-0.036 Sum_probs=83.2
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 44543 45666667788888888888888887743 34 5667777888888889999998888877 3344 45678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
..+..++...|++++|...+++++++.|+++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88888999999999999999999999998765533
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-06 Score=68.15 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567778889999999999999999987 3233 57789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=71.88 Aligned_cols=94 Identities=10% Similarity=-0.003 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-------hhHHH
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS-------GNYVL 440 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 440 (604)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777788888888888888776 4444 466888888888899999999999999988877654 36677
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888889999999999888765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.9e-06 Score=72.81 Aligned_cols=152 Identities=10% Similarity=-0.055 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCC-chHHHHHHHHHHhhcCCHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF---SLTP-MIEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~ 386 (604)
.|++++|.++++.+.. .......++..+...+...|++++|...++...+.. +..| ....+..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333322 111123444555555555566666555555444311 1112 1334555666677777777
Q ss_pred HHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCC----chhHHHHHHHHHhcCCh
Q 044872 387 EAHELIKSM-P---MEP-N----AIVWGALLAGCRLHKKTDLAEHVLNQLIALE--PWN----SGNYVLLSNIYSASHKW 451 (604)
Q Consensus 387 ~A~~~~~~~-~---~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~ 451 (604)
+|.+.+++. . ..+ + ...+..+...+...|++++|...+++.++.. ..+ ..++..++.+|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777666654 1 112 2 2356667777888888888888888887542 122 22457788899999999
Q ss_pred HHHHHHHHHHhh
Q 044872 452 NDAAKIRSMMGD 463 (604)
Q Consensus 452 ~~A~~~~~~m~~ 463 (604)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.5e-06 Score=68.81 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=88.7
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667888889999999999999999987 5555 677899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.7e-06 Score=64.97 Aligned_cols=110 Identities=14% Similarity=0.058 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGC 411 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 411 (604)
..+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555666667777777777666543 1224556666677777777777777777766 2233 466788888888
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8999999999999999999998887777766554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.9e-06 Score=69.60 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455556666666777777777777665 44555 4566666667777777777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 044872 444 IYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (604)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-06 Score=71.93 Aligned_cols=104 Identities=11% Similarity=0.020 Sum_probs=87.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|.+.|++. .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45654 46777778889999999999999998853 45 4778888999999999999999999988 4445 45688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
..+..++...|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=67.66 Aligned_cols=112 Identities=13% Similarity=-0.056 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGA 406 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 406 (604)
...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555555566666666666665552 2343 455666667777777777777777665 3333 5667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
+...+...|++++|...++++++++|++...+..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888899999999999999999999887777777666543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.1e-06 Score=74.46 Aligned_cols=152 Identities=12% Similarity=0.008 Sum_probs=94.0
Q ss_pred hcCCHHHHHH---HHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCcHH
Q 044872 279 KCGRMAQACK---VFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK----CGIQP-NGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 279 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 350 (604)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223345666666677777777777777776654 12222 2245666667777788888
Q ss_pred HHHHHHHHchhhc---CCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCCh
Q 044872 351 EGRQFFNSMSRVF---SLTP--MIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPNA----IVWGALLAGCRLHKKT 417 (604)
Q Consensus 351 ~a~~~~~~~~~~~---~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~----~~~~~ll~~~~~~~~~ 417 (604)
+|...++...+.. +-.| ....+..+...+...|++++|.+.+++. +..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8888777665431 2111 1334666777788888888888877765 111222 2456677778888999
Q ss_pred HHHHHHHHHHHcc
Q 044872 418 DLAEHVLNQLIAL 430 (604)
Q Consensus 418 ~~a~~~~~~~~~~ 430 (604)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=5.5e-06 Score=74.19 Aligned_cols=168 Identities=8% Similarity=-0.058 Sum_probs=100.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 352 (604)
.....|+++++.+.++.-.+. ....|..+...+...|++++|+..|++.... .|+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 344455555555555433221 3345666666677777777777777777662 2321100000 00000
Q ss_pred HHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 353 RQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
. .. .....+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01345667778888889999998888877 3334 5668888999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHH-HHHHHHhhC
Q 044872 431 EPWNSGNYVLLSNIYSASHKWNDAA-KIRSMMGDK 464 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 464 (604)
+|+++..+..+..++...|+.+++. ..++.|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888887777 555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.2e-06 Score=72.23 Aligned_cols=127 Identities=7% Similarity=0.039 Sum_probs=98.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH-HhhcCCH--
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL-LGRSGQL-- 385 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 385 (604)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888999998887742 2355778888888999999999999999887542 2346677777777 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 3344 466888889999999999999999999999999876543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=67.50 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 368 MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3566777888999999999999999987 3334 6778899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 044872 446 SASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~ 464 (604)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=5.1e-06 Score=70.01 Aligned_cols=90 Identities=11% Similarity=-0.006 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHcc-------CC
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PMEPN-------------AIVWGALLAGCRLHKKTDLAEHVLNQLIAL-------EP 432 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p 432 (604)
.....+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344455566666666666554 21222 238888889999999999999999999998 99
Q ss_pred CCchhH----HHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 433 WNSGNY----VLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 433 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++..+| ...+.++...|++++|...|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999 9999999999999999999999976
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=69.36 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3578888888999999999999999999999999999999999999999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-06 Score=70.06 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=81.5
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34433 34555566777788888888888877743 33 4666777778888888888888888876 3334 45577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
..+..++...|++++|...+++++++.|+++.......
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 78888899999999999999999999988876655443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=65.43 Aligned_cols=109 Identities=9% Similarity=-0.116 Sum_probs=76.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
.+......+...|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666667777777777766642 1223566677777777777777777777766 3334 4567888888888
Q ss_pred hcCChHHHHHHHHHHHccC------CCCchhHHHHHHHH
Q 044872 413 LHKKTDLAEHVLNQLIALE------PWNSGNYVLLSNIY 445 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 445 (604)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8999999999999998888 77766666665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-05 Score=68.53 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLA 409 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 409 (604)
...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.|++. ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666666777778888888888777643 33 4667777888888888888888888877 3344 4668899999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
.+...|++++|...++++++++|++...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887655443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-05 Score=67.18 Aligned_cols=127 Identities=8% Similarity=-0.114 Sum_probs=80.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLL 379 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 379 (604)
.|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45555666667777777777777776632 224556666667777777777777777776643 123455667777777
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCChHHHHHHHHHHHc
Q 044872 380 GRSGQLDEAHELIKSM-PMEP-NAIVWGA--LLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7788888888777766 2233 3334433 33336667788888887776543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=8.4e-06 Score=83.93 Aligned_cols=113 Identities=9% Similarity=-0.073 Sum_probs=57.0
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 385 (604)
+.+.|++++|++.|++..+ ..|+ ..++..+..++...|++++|.+.++...+. .| +...+..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCH
Confidence 4455566666666666555 2332 445555555666666666666666655532 23 344555555666666666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAG--CRLHKKTDLAEHVLN 425 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~~~~~~a~~~~~ 425 (604)
++|.+.+++. ...| +...+..+..+ +...|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666554 2222 12233333333 555566666666666
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.4e-06 Score=66.93 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=65.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYS 446 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 446 (604)
+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445566777777777777765 222322 366667777788888888888888888888877 666788888888
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888887764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.7e-05 Score=79.14 Aligned_cols=163 Identities=6% Similarity=-0.155 Sum_probs=111.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCCc-hHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKC-GIQPNGN----TFVGLLCGCTHAGLVDEGRQFFNSMSRV---FSLTPM-IEH 371 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 371 (604)
+..+...|...|++++|.+.+.++... +..++.. +...+-..+...|+++++..++...... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777788888888888888776541 1112221 2223333445678888888888765431 122222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCC----ch
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-------PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALE---PWN----SG 436 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 436 (604)
+..+...|...|++++|.+++++. ..+|. ..++..++..|...|++++|..++++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888999999999999988765 11232 3377888888999999999999999887543 222 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+..++..+...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566778888899999999988877754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=69.80 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 382 SGQLDEAHELIKSM-PM---EPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.|++++|.+.|++. .. .|+ ...|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666665 33 243 34667777777777888888888888877778777777778888888888888888
Q ss_pred HHHHHhhC
Q 044872 457 IRSMMGDK 464 (604)
Q Consensus 457 ~~~~m~~~ 464 (604)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=80.56 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456778888899999999999999887 3344 56789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHhh
Q 044872 447 ASHKWNDAAK-IRSMMGD 463 (604)
Q Consensus 447 ~~g~~~~A~~-~~~~m~~ 463 (604)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998875 4555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00046 Score=66.64 Aligned_cols=215 Identities=9% Similarity=-0.022 Sum_probs=140.4
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-C-ChHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREH-DFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHC-G-YLAD 83 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~ 83 (604)
..+..++|++++++++...+. +..+|+.--..+...+ .++++..+++.++... +-+..+|+.....+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344556888888888886433 4445665555555666 5888888888888764 33566777776666665 6 7888
Q ss_pred HHHHhccCCCC---CcccHHHHHHHHHhCCChh--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC------
Q 044872 84 ALKVFDDIPDK---NVVSWTAIISGYINEGNLE--------EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGD------ 146 (604)
Q Consensus 84 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 146 (604)
++.+++.+.+. |-.+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 88888887664 4556665555555555555 888888888886543 66677777777777765
Q ss_pred -hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHccCCC---------CC
Q 044872 147 -LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNM--------------------EKARRVFDQMPE---------KD 196 (604)
Q Consensus 147 -~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~--------------------~~A~~~~~~~~~---------~~ 196 (604)
++++.+....++... +.|...|+-+-..+.+.|+- ........++.. ++
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 567777777777765 44777787777777776653 333344444332 23
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQR 225 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (604)
...+..|+..|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34566677777777777777777777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0012 Score=63.82 Aligned_cols=173 Identities=10% Similarity=0.007 Sum_probs=91.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEYY-TMVGVLSACASLG-ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC-G 281 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 281 (604)
....+.+..++|++++.+++.. .|+.. .++.--..+...+ .++++...++.++..... +..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 3334445556788888887764 44433 3444444444555 477777777777765533 455555555555554 5
Q ss_pred -CHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-
Q 044872 282 -RMAQACKVFREMKDKD---QVVWNAVVSGLSMNGYVK--------VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL- 348 (604)
Q Consensus 282 -~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 348 (604)
+++++.++++.+.+.| ..+|+--.-.+.+.|..+ ++++.++++.+.. .-|...++.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 6777777777777643 344544333333333333 6666666666632 1244455544444444443
Q ss_pred ------HHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCC
Q 044872 349 ------VDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 349 ------~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 384 (604)
++++.++++.+... .| |...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 45555555555432 22 34444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=65.76 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------chhHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-------SGNYV 439 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 439 (604)
...+..+...+...|++++|...|++. ... .+...|..+...+...|+++.|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777888888888888888876 223 356788888888999999999999999999887766 77889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 440 LLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++.+|...|++++|.+.++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=7.5e-06 Score=73.29 Aligned_cols=119 Identities=8% Similarity=-0.088 Sum_probs=86.5
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC--------------HHHHH
Q 044872 344 THAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-P---MEPN--------------AIVWG 405 (604)
Q Consensus 344 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~--------------~~~~~ 405 (604)
...|.++.+.+.|+..... .......+..+...+.+.|++++|.+.|++. . ..|+ ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555555433221 0112344566667788888888888888776 2 2221 26788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 406 ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+..++...|++++|...++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-05 Score=75.42 Aligned_cols=103 Identities=11% Similarity=-0.090 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 044872 332 NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALL 408 (604)
Q Consensus 332 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 408 (604)
+...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455566666677777777777777766643 33 4556666667777777777777777665 4444 344666666
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.++...|++++|...++++++++|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 66777777777777777777766655433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00062 Score=65.37 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCC-HHHHHHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCG--RMAQACKVFREMKD---KDQVVWNAVVSGLSMNGY-VKVAFGVF 321 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 321 (604)
++.+..+++.++..... +..+++.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45566666666654432 4555555555555666 36777777777654 355566666666666666 47788888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhc----
Q 044872 322 GQLEKCGIQPNGNTFVGLLCGCTHA--------------GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRS---- 382 (604)
Q Consensus 322 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 382 (604)
.++.+.. +-|...|+.....+.+. +.++++.+++...... .| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 8777743 12444444443333332 4566777777766632 33 455555444444443
Q ss_pred -------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 383 -------GQLDEAHELIKSM-PMEPNAIVWGALLAG-----CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 383 -------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
+.++++++.++++ ...||. .|..+..+ ....+..++....+.++.+++|...+-|.-+..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3466677766666 444553 34322211 123456667777777777777766555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.4e-05 Score=64.86 Aligned_cols=100 Identities=9% Similarity=-0.137 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044872 332 NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLA 409 (604)
Q Consensus 332 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 409 (604)
+...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45566666677777777777777777766431 223566777777778888888888887776 3334 4668888888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCC
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+...|+++.|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999998888776
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-05 Score=66.03 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC------CCch
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEP------WNSG 436 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 436 (604)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555666666666666666554 11111 33566677778888888888888888775421 1235
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677889999999999999999888765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=64.91 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=60.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM----EPN----AIVWGA 406 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 406 (604)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444455555555555544432 1123344445555555555555555555544 11 122 456677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
+...+...|+++.|...++++++..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77778888888888888888888777 4555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=62.18 Aligned_cols=67 Identities=16% Similarity=0.020 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCCCCc
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP---NAIVWGALLAGCRLH-KKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 435 (604)
...+..+...|...|++++|.+.+++. ...| +...|..+...+... |++++|.+.++++++..|.++
T Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 40 SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 334444555555556666666555554 2223 355667777777777 777777777777777777543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.6e-05 Score=76.28 Aligned_cols=125 Identities=7% Similarity=-0.032 Sum_probs=85.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHchhhc
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN----------------GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF 363 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 363 (604)
.|..+...|.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...++.+.+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4445555555566666666666666552 232 356777777788888888888888877753
Q ss_pred CCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHc
Q 044872 364 SLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA-EHVLNQLIA 429 (604)
Q Consensus 364 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 429 (604)
.| +...+..+..+|...|++++|.+.|++. .+.| +...+..+...+...|+.++| ...++++++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 4667777788888888888888888877 4444 456777788888888888888 456666653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.2e-05 Score=62.58 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=63.9
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLH 414 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~ 414 (604)
..+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|.+.|++. ...|+ ...+..+...+...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444556666666666655543111110 134555666677777777777777665 22232 44677777788888
Q ss_pred CChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 415 KKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 415 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
|++++|...++++++..|+++........
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 99999999999998888887655444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-05 Score=77.39 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...|..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888889999999999999999887 5556 46688999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHH
Q 044872 447 ASHKWNDAAKI 457 (604)
Q Consensus 447 ~~g~~~~A~~~ 457 (604)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 98888877653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-05 Score=64.29 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
|..+...+.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555555555555555555554 2332 3344445555555555555555555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=67.49 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PM-------EPNAI-VW----GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~p~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.|..+..++.+.|++++|+..+++. .+ .|+.. .| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666777777777777666655 33 78755 88 899999999999999999999999999988765
Q ss_pred HHHH
Q 044872 438 YVLL 441 (604)
Q Consensus 438 ~~~l 441 (604)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=78.61 Aligned_cols=147 Identities=9% Similarity=-0.101 Sum_probs=80.9
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
...|..+...+.+.|++++|+..|++... ..|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566667777788888888888888777 4455432 233444444433221 135777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH-HhcCChHHH
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY-SASHKWNDA 454 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 454 (604)
.|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...|+++++++|+++.++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998877 4344 5668888889999999999999999999999999888888888774 455677788
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
..++++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.5e-05 Score=63.47 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=57.2
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHK 415 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 415 (604)
+...+...|++++|...|+...+. .| +...+..+..++.+.|++++|...|++. ...| +...|..+...+...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455566666666666665532 33 3555566666666777777777776665 3344 4557777777788888
Q ss_pred ChHHHHHHHHHHHccCCCC
Q 044872 416 KTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~ 434 (604)
++++|...++++++.+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 8888888888888887765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.6e-05 Score=75.96 Aligned_cols=123 Identities=8% Similarity=-0.017 Sum_probs=92.7
Q ss_pred HhccCcHHHHHHHHHHchhhc--CC---CCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVF--SL---TPM-IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPNAI-VWGA 406 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ 406 (604)
+...|++++|..+++...+.. -+ .|+ ..+++.|..+|...|++++|..++++. +..|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777777777776554321 11 122 456778888888888888888887765 3456554 7899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHc-----cCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIA-----LEPWNSG---NYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|...|..+|++++|+.+++++++ ++|+.+. ....+..++...|++++|..++.+++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 5677654 44568888899999999999999998753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.6e-06 Score=65.45 Aligned_cols=93 Identities=13% Similarity=-0.047 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHH
Q 044872 368 MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYV 439 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 439 (604)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888899999999988877 3344 56788889999999999999999999999999988 77788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 044872 440 LLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~ 460 (604)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.8e-05 Score=64.24 Aligned_cols=97 Identities=7% Similarity=0.004 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEP-NAI 402 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 402 (604)
++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444455555556666666655554432111111 234555556666677777776666554 1111 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
++..+...+...|++++|...+++.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777888888888888888877643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-05 Score=63.41 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=60.9
Q ss_pred cCcHHHHHHHHHHchhhcCC-CC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSL-TP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
.|++++|+..|+...+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666531 10 23 2455666777777777888887777776 3334 4557777888888888999999
Q ss_pred HHHHHHHccCCCCchhH
Q 044872 422 HVLNQLIALEPWNSGNY 438 (604)
Q Consensus 422 ~~~~~~~~~~p~~~~~~ 438 (604)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99998888888876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=3e-05 Score=75.93 Aligned_cols=151 Identities=9% Similarity=-0.058 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA 346 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 346 (604)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788888999999999999998654222111 1223344444433221 13567777888889
Q ss_pred CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHhcCChHHHHH
Q 044872 347 GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAG-CRLHKKTDLAEH 422 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~-~~~~~~~~~a~~ 422 (604)
|++++|...++...+. .| +...|..+..+|...|++++|.+.|++. .+.|+.. .+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888753 34 5677888889999999999999999888 5566543 55555544 345567788889
Q ss_pred HHHHHHccCCCCc
Q 044872 423 VLNQLIALEPWNS 435 (604)
Q Consensus 423 ~~~~~~~~~p~~~ 435 (604)
.|+++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=66.73 Aligned_cols=77 Identities=22% Similarity=0.072 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-hhHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS-GNYVLLSNIY 445 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 445 (604)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888889999999999988877 4445 566889999999999999999999999999999887 4444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00026 Score=71.71 Aligned_cols=156 Identities=12% Similarity=-0.013 Sum_probs=111.5
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH-
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPN----------------GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE- 370 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~- 370 (604)
+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++..
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 4455667777777766665321110 12366788899999999999999998875433333322
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc------CCC
Q 044872 371 ---HYGCMVDLLGRSGQLDEAHELIKSM-------PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIAL------EPW 433 (604)
Q Consensus 371 ---~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~p~ 433 (604)
+.+.+...+...|++++|.++++.. +..+. ..++..|...+...|++++|...++++... .|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 2333344555678999999888765 22333 447888899999999999999999998742 122
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 434 NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
....+..++.+|...|++++|..++++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 346788999999999999999999998865
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=7.4e-05 Score=58.20 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56688999999999999999999999999999999999999999999999999999999988763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0026 Score=61.02 Aligned_cols=179 Identities=12% Similarity=0.003 Sum_probs=127.3
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNG--YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL-VDEGRQFF 356 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 356 (604)
++++..+++.+.. ++..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777654 46678887777777777 4899999999999843 2356677666666667777 68999999
Q ss_pred HHchhhcCCCCchHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 044872 357 NSMSRVFSLTPMIEHYGCMVDLLGRS--------------GQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH------ 414 (604)
Q Consensus 357 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 414 (604)
+.+.+.. +-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998641 33566676666555554 5688899998877 3344 677887665555444
Q ss_pred -----CChHHHHHHHHHHHccCCCCchhHHHHHHH---HHhcCChHHHHHHHHHHhhC
Q 044872 415 -----KKTDLAEHVLNQLIALEPWNSGNYVLLSNI---YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 415 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~ 464 (604)
+.++++++.++++++++|++.-.+..++.. ....|..+++...+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 458899999999999999884443333322 23467888889999988863
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00046 Score=72.34 Aligned_cols=166 Identities=8% Similarity=0.018 Sum_probs=124.9
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNGY----------VKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAG- 347 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g- 347 (604)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+ ..| +...|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccc
Confidence 4566777766654 234566665555555555 7888888988887 345 4567777666777778
Q ss_pred -cHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 044872 348 -LVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSG-QLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH-------- 414 (604)
Q Consensus 348 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 414 (604)
+++++.+.++.+.+. .| +...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999988854 34 4667777777777888 889999998888 5555 667888877776553
Q ss_pred ------CChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 415 ------KKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 415 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
+.++++.+.+++++.++|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=71.98 Aligned_cols=112 Identities=6% Similarity=-0.046 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 412 (604)
..+..+...+...|++++|...|+...+.. |... .....+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777665320 1000 000111111 1223 3458888999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999874
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00012 Score=55.49 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777788888888888888776 3333 56678888888999999999999999999999998888888888876
Q ss_pred hcC
Q 044872 447 ASH 449 (604)
Q Consensus 447 ~~g 449 (604)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00024 Score=72.65 Aligned_cols=95 Identities=7% Similarity=-0.086 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----------------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+..+...|.+.|++++|...|++. ...|+ ...|..+..++.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4455555666666666666666655 11121 468888999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 434 NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
++.+|..++.+|...|++++|...|++..+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.1e-05 Score=59.94 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=65.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 387 EAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 387 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+|.+.|++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3444 56688888899999999999999999999999999999999999999999999999999988763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=2e-05 Score=66.17 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 381 RSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKK----------TDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
|.+++++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666655 3334 45566666666665554 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHhhCC
Q 044872 449 H-----------KWNDAAKIRSMMGDKG 465 (604)
Q Consensus 449 g-----------~~~~A~~~~~~m~~~~ 465 (604)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998843
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=73.37 Aligned_cols=114 Identities=9% Similarity=0.008 Sum_probs=87.8
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---hhHH
Q 044872 378 LLGRSGQLDEAHELIKSM---------PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNS---GNYV 439 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~ 439 (604)
.+..+|++++|..++++. +..|+.. +++.|...|...|++++|+.+++++++ ++|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 2345444 899999999999999999999999875 456554 5688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 044872 440 LLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLK 509 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~ 509 (604)
.|+.+|..+|++++|..++++..+-... .-...||...++...+.+...+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998762110 112478988888777766665554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00031 Score=53.61 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 398 EPNAIVWGALLAGCRLHKK---TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
.+|...|..+..++...++ .++|..+++++++++|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888765554 79999999999999999999999999999999999999999999998654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=71.24 Aligned_cols=116 Identities=10% Similarity=0.067 Sum_probs=88.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---hh
Q 044872 376 VDLLGRSGQLDEAHELIKSM---------PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNS---GN 437 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~ 437 (604)
+.-+.+.|++++|.+++++. +..|+. .+++.|...|...|++++|+.+++++++ +.|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34466778888888888765 122333 3788899999999999999999998874 345544 56
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLK 509 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~ 509 (604)
+..|+.+|..+|++++|..++++..+--. . +-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999876211 0 113479999999888888887775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00033 Score=55.27 Aligned_cols=66 Identities=14% Similarity=-0.052 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999998753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0015 Score=54.23 Aligned_cols=90 Identities=10% Similarity=-0.075 Sum_probs=56.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh---
Q 044872 375 MVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA--- 447 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 447 (604)
|..+|...+.+++|.++|++.-..-+...+..|...|.. .++.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444445555555555554212345555555555555 66777777777777665 355677777777777
Q ss_pred -cCChHHHHHHHHHHhhCCC
Q 044872 448 -SHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 448 -~g~~~~A~~~~~~m~~~~~ 466 (604)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 7777777777777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00082 Score=50.59 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999998874
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00067 Score=68.17 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---hhHHHHHH
Q 044872 382 SGQLDEAHELIKSM---------PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNS---GNYVLLSN 443 (604)
Q Consensus 382 ~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 443 (604)
.|++++|..++++. +..|+.. +++.|..+|...|++++|+.+++++++ ++|+++ ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776654 3345443 788899999999999999999999874 445554 56888999
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 044872 444 IYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (604)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999876
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=60.16 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHHHHccCCCCc
Q 044872 385 LDEAHELIKSM-PMEPN-AIVWGALLAGCRLH-----------KKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+++|+..|++. .+.|+ ..+|..+..+|... |++++|.+.|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666555 44443 34666666666655 589999999999999999875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0026 Score=66.57 Aligned_cols=150 Identities=13% Similarity=-0.005 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHchhhcCCCCchHHHHHHHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGL----------VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLL 379 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 379 (604)
....++|++.++++.. +.|+. ..|+.--.++...|+ ++++.+.++.+.+. -+.+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445788999999998 66765 445554445555565 89999999999864 233566777777788
Q ss_pred hhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc------
Q 044872 380 GRSG--QLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHK-KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS------ 448 (604)
Q Consensus 380 ~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 448 (604)
.+.| +++++++.++++ ...| +..+|+--.......| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999998 3334 7779998888888888 899999999999999999999999999888774
Q ss_pred --------CChHHHHHHHHHHhhC
Q 044872 449 --------HKWNDAAKIRSMMGDK 464 (604)
Q Consensus 449 --------g~~~~A~~~~~~m~~~ 464 (604)
++++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678898888888753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.027 Score=44.76 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=103.9
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3467888888888887663 245566666665555666666677777665543332 36666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 389 HELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
..-+-.++. +......-+.....+|.-++-.+++..++.-+|.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666642 44555667788889999999999999987766768899999999999999999999999999999985
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0087 Score=57.70 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHH--hCC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 044872 296 KDQVVWNAVVSGLS--MNG---YVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGC 343 (604)
Q Consensus 296 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 343 (604)
.+...|...+.+.. ..+ ...+|..+|++..+ ..|+. ..+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46677777776543 223 34788999999988 66764 3444433333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0021 Score=51.03 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=52.6
Q ss_pred HHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 352 GRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+...|+...+ ..| +...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555542 233 3556666667777777777777777766 3333 45577777778888888888888888888
Q ss_pred ccCCC
Q 044872 429 ALEPW 433 (604)
Q Consensus 429 ~~~p~ 433 (604)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0072 Score=49.96 Aligned_cols=110 Identities=13% Similarity=0.010 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK----CGNMEKA 185 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A 185 (604)
+++++|++.|++..+.| .|+.. +...+...+..+.|...++...+.| ++..+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888887776 23322 5555666667777888888877765 56677777777777 6777777
Q ss_pred HHHHccCCC-CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCC
Q 044872 186 RRVFDQMPE-KDIVSWSSMIQGYAS----NGFPKEALDMFYNMQREN 227 (604)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 227 (604)
.+.|++..+ .+..++..|...|.. .+++++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777776543 455666677777776 677777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0042 Score=62.32 Aligned_cols=93 Identities=10% Similarity=-0.077 Sum_probs=64.3
Q ss_pred cCcHHHHHHHHHHchhhc--CCC---Cc-hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVF--SLT---PM-IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPNAI-VWGALLA 409 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~ 409 (604)
.|++++|..+++...+.. -+. |+ ..+++.|..+|...|++++|..++++. +..|+.. +++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666544321 112 22 356777777888888888887777665 3456654 7889999
Q ss_pred HHHhcCChHHHHHHHHHHHc-----cCCCCchhH
Q 044872 410 GCRLHKKTDLAEHVLNQLIA-----LEPWNSGNY 438 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 438 (604)
.|..+|++++|+.+++++++ ++|+.+.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999875 567776543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0074 Score=60.62 Aligned_cols=100 Identities=12% Similarity=-0.122 Sum_probs=68.0
Q ss_pred HHHhccCcHHHHHHHHHHchhhc--CCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVF--SLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPNAI-VW 404 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~ 404 (604)
..+...|++++|...++...+.. -+.|+ ..+++.+..+|...|++++|+.++++. +..|+.. ++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445667777777766554321 11222 346677777788888888887777655 3445544 78
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCchhHHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNSGNYVL 440 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 440 (604)
+.|...|..+|++++|+.+++++++ ++|+.+.+-..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8899999999999999999998875 56877655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0074 Score=50.01 Aligned_cols=65 Identities=9% Similarity=-0.122 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 399 PNAIVWGALLAGCRLHK---KTDLAEHVLNQLIALE-P-WNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 399 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++..+.-.+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666666777777776 5668888888888877 6 4567788888888888888888888888876
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0026 Score=48.81 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSG-NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444444444444 444444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0062 Score=46.62 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=59.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCCh
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEP-NAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 451 (604)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345677888899998888877 3344 556 78888888999999999999999999999988776632 445
Q ss_pred HHHHHHHHHHh
Q 044872 452 NDAAKIRSMMG 462 (604)
Q Consensus 452 ~~A~~~~~~m~ 462 (604)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0039 Score=48.14 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
..|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.|+...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555555442 222 2344444445555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.13 Score=56.42 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=95.6
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 044872 104 SGYINEGNLEEAIN-MFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNM 182 (604)
Q Consensus 104 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (604)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. . ..-...+..+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 33445677777766 4411 1 1122335666667777777777665431 1 1123456778999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 044872 183 EKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNE 262 (604)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (604)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987764 457899999999999999999999988743 3334444445666666555554444433
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
- ++....+|.++|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 13334456667777777766544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.12 Score=56.78 Aligned_cols=129 Identities=12% Similarity=0.185 Sum_probs=84.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChh
Q 044872 34 PFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLE 113 (604)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 113 (604)
..++..+...|..+.|.++.+ +. ..-.......|++++|.++.+.+. +...|..|...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 556666667777777665542 11 112345567899999999887764 5678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 114 EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
.|.++|.++.. |..+...+...++.+....+-+.....| -++.-..+|.++|++++|.+++.+
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988743 4444555555677776666655555543 123334456666777777666433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.051 Score=52.39 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHh----hcCC-------HHHHHHH
Q 044872 329 IQPNGNTFVGLLCGCTH-----AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLG----RSGQ-------LDEAHEL 391 (604)
Q Consensus 329 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g~-------~~~A~~~ 391 (604)
.+.+...|...+.+... .....+|..+|++..+ +.|+ ...|..+.-+|. ..+. +..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34455666666655432 2346889999999884 4676 334443332221 1111 1223332
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 392 IKSMPM-EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 392 ~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
...+.. ..+..+|.++...+...|+++.|...++++++++| +...|..++.++.-.|++++|.+.+++....+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 233322 34677888887777788999999999999999997 467888999999999999999999999987543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.011 Score=54.58 Aligned_cols=87 Identities=8% Similarity=0.068 Sum_probs=70.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHccCCCC-chhHHHHHHHHHhc-CChHH
Q 044872 385 LDEAHELIKSM-PMEPN---AIVWGALLAGCRL-----HKKTDLAEHVLNQLIALEPWN-SGNYVLLSNIYSAS-HKWND 453 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 453 (604)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555556555 55666 4578888888888 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHhhCCCccCCc
Q 044872 454 AAKIRSMMGDKGIQKIRG 471 (604)
Q Consensus 454 A~~~~~~m~~~~~~~~~~ 471 (604)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999876664454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.043 Score=42.50 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-----P----MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL 441 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (604)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445556666667777776666654 1 113456888899999999999999999999999999987665554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.033 Score=42.15 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=52.3
Q ss_pred CchHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 367 PMIEHYGCMVDLLGRSGQ---LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...|+++++.+|.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456667777777754444 68888888887 4455 45577777788899999999999999999999873
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.23 Score=42.23 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044872 275 DMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQ 354 (604)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 354 (604)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788888888887776 4567888888888888888888888887643 3344445556677666555
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 44433322 1 134444556668888888888888754332221 123467777777776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.043 Score=45.45 Aligned_cols=73 Identities=18% Similarity=0.024 Sum_probs=46.7
Q ss_pred CchHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 367 PMIEHYGCMVDLLGRSG---QLDEAHELIKSM-PME-P--NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
++..+.-.+..++.+.+ +.+++..++++. ... | +...+-.|.-+|.+.|++++|.+.++++++.+|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444444555554 344555555544 112 3 2335556777889999999999999999999998864433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=3.2 Score=43.37 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 313 YVKVAFGVFGQLEKCG-IQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
+.+.|..+|....... ..+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677888887775432 222221 2222232333444244455555544322 222222223333334668888888
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 390 ELIKSMPMEP-N-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 390 ~~~~~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
..|+.|+..+ + ....-=+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888885332 2 22122233456677888888888887764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.12 Score=41.09 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=20.9
Q ss_pred HHHHHHHHHccC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 420 AEHVLNQLIALE-P-WNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 420 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++.+++.++..+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444433 2 2233444455555555555555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.79 Score=38.86 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=80.7
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 044872 73 NLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKW 152 (604)
Q Consensus 73 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 152 (604)
.....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455778888888887665 3567788888888888888888888887643 4444445556677776666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 044872 153 IHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNM 223 (604)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (604)
+-+.....| -++.-...+.-.|+++++.++|.+..+.. --+......|..+.|.++..++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 655555544 13344445566688888888876654411 1111112245555666665554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0029 Score=62.32 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=166.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 044872 64 DEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ 143 (604)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (604)
.+.+|..|..++.+.+++.+|..-|- ...|+..|..+|....+.|.+++-+..+...++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 46788889999988888888887663 345778899999999999999998888876665433 33444567888999
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC------------------------CCcch
Q 044872 144 LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE------------------------KDIVS 199 (604)
Q Consensus 144 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------~~~~~ 199 (604)
.+++.+-++++. .||+.-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888776555442 46666667788888888999988888877652 36778
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 200 WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
|-.+-.+|...+.+.-|.-.--.+.- .||. ...++.-|...|.+++-..+++.-+.. -.....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 99999999999888766544333332 2221 123444566777777777776665532 13467888889888987
Q ss_pred cCCHHHHHHHHHhcCC----C-------CcccHHHHHHHHHhCCCHHHHHH
Q 044872 280 CGRMAQACKVFREMKD----K-------DQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
- ++++-.+-++.... | ....|.-++-.|.+..+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 44444444443322 1 45678888888888888886643
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.074 Score=52.63 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=109.2
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
..++..+|++-|-+. -|+..|..++.++.+.|.++.-...+....+. ..++.+-+.|+-+|++.+++.+-++
T Consensus 66 ~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 66 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp TSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred ccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHH
Confidence 344555555544221 25566777777777777777666666555443 3344555677777777766554332
Q ss_pred ----------------------------HhccCC------------------------CCCcccHHHHHHHHHhCCChhH
Q 044872 87 ----------------------------VFDDIP------------------------DKNVVSWTAIISGYINEGNLEE 114 (604)
Q Consensus 87 ----------------------------~f~~~~------------------------~~~~~~~~~li~~~~~~g~~~~ 114 (604)
+|..++ ..++.+|-.+-.+|...+.+.-
T Consensus 138 fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 138 FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTT
T ss_pred HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHH
Confidence 222221 0244555555555555555554
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 044872 115 AINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE 194 (604)
Q Consensus 115 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 194 (604)
|.-+--.++- .|| -+..++..|-..|.+++-..+++..+... ......++-|.-.|+|- +.++-.+.++..-.
T Consensus 218 AqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 218 AQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp TTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 4433322221 111 12233444555566666555555544211 34667888888888886 34444444433221
Q ss_pred ----C-------CcchHHHHHHHHHhCCCchHHHH
Q 044872 195 ----K-------DIVSWSSMIQGYASNGFPKEALD 218 (604)
Q Consensus 195 ----~-------~~~~~~~li~~~~~~g~~~~A~~ 218 (604)
| ....|.-++-.|.+-.+++.|..
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 44579999999999999887754
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=1.7 Score=35.11 Aligned_cols=66 Identities=8% Similarity=-0.067 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 398 EPNAIVWGALLAGCRLHK---KTDLAEHVLNQLIALEPW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.|+..+--.+..++.+.. +..+++.+++.++...|. .......|+-.+.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345444444444554444 345677777777776664 345566777788888888888888887776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.22 Score=38.38 Aligned_cols=65 Identities=11% Similarity=-0.152 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALE-------PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+..-+..|...+...++++.|...++++++.. +..+..+..|+.+|.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998642 334567899999999999999999999999763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.8 Score=36.35 Aligned_cols=74 Identities=19% Similarity=0.031 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDE---AHELIKSM-PME-P-N-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
|+..+--.+..++.+.....+ ++.+++.. ... | + ....-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555555444 55666555 222 3 1 223445666789999999999999999999998865544
Q ss_pred H
Q 044872 440 L 440 (604)
Q Consensus 440 ~ 440 (604)
.
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.24 Score=40.39 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=38.7
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
..+|.++|.++|+.++++...-+..+...+..-.++|+.+.|++++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 336788888888888766444455666666767788888888888888877554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.097 Score=48.36 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCC
Q 044872 371 HYGCMVDLLGRS-----GQLDEAHELIKSM-PMEPN--AIVWGALLAGCRL-HKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 371 ~~~~li~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~ 433 (604)
.|..+...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.+.+.+.++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444555555552 5666666666555 34442 3444445555444 36666666666666665554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.80 E-value=1 Score=48.05 Aligned_cols=53 Identities=15% Similarity=-0.046 Sum_probs=49.8
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
-|...|+++.|.++.+++...-|.+-.+|..|+.+|...|+|+.|.-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36778999999999999999999999999999999999999999999999885
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.30 E-value=0.92 Score=37.05 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=41.9
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 381 RSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
..++.++|.++|+.+ ... .=...|-....--.++|++..|.+++.+++++.|.+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 346777777777766 111 1156777777777889999999999999999988764443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.63 E-value=1.8 Score=34.52 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHccCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 418 DLAEHVLNQLIALEPW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+++.+++.+++.+|. ....+..|+-++.+.|++++|.+..+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555554442 233445555555566666666655555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.52 E-value=7 Score=31.29 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=71.7
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----------------------HhcCChHHHHHHhccCCCCCccc
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLY----------------------VHCGYLADALKVFDDIPDKNVVS 98 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----------------------~~~g~~~~A~~~f~~~~~~~~~~ 98 (604)
...|..+++.++.....+.. +..-+|-.|--. ..||.+......+-.+. .+...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-~~se~ 93 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNEH 93 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-chHHH
Confidence 34577788888877776653 333333333222 23444444444443332 23444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
.+.-+..+...|+-++-.+++..+.. +.+|++..+..+..||.+.|+..++.+++.++-+.|.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 55666777777777777777777543 3466777777777888888888888888777777764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.27 E-value=4 Score=30.60 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+-. ...|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455677777888888899999999999999999999999999999998754433 456766654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.03 E-value=23 Score=33.40 Aligned_cols=167 Identities=12% Similarity=0.041 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMF----YNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44566678899999999987533 233455667766655544 444456788888777777777765
Q ss_pred cCchH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHH
Q 044872 245 LGALE-LGVWASSFM----ERNE--FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 245 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 317 (604)
...-+ .-..+...+ .+.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 54311 112223333 3333 344778888999999999999999998843222222455444433333322111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchh
Q 044872 318 FGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 318 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
+|...-..++ -|...+++..|...++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34456778888776665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.92 E-value=2.1 Score=35.65 Aligned_cols=123 Identities=16% Similarity=0.110 Sum_probs=60.4
Q ss_pred CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch-------HHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 044872 327 CGIQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI-------EHYGCMVDLLGRSGQLDEAHELIKSM-- 395 (604)
Q Consensus 327 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-- 395 (604)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555443 34444556666777777777666544332223331 24445556777777777777776663
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 396 -----PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 396 -----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+-.|+. ..++. ...... .-..+ +.+...-.-++.+|.+.|++++|..+++.+..
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCc--ccccc----ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111111 10000 000000 00001 22335666799999999999999999887643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.70 E-value=25 Score=37.53 Aligned_cols=55 Identities=20% Similarity=0.054 Sum_probs=45.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 044872 138 LTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP 193 (604)
Q Consensus 138 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 193 (604)
...|...|+++.|..+-...+... +.+-.+|..|..+|.+.|+++.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667889999999988888764 4567789999999999999999999988887
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.36 E-value=24 Score=32.99 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHh
Q 044872 67 VKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINM----FRRLLHRGLKPDSFSIVRVLTACT 142 (604)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 142 (604)
.+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.++++|..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455677788899999999887432 2345667777666654 455556788889888888887776
Q ss_pred cCCChH-HHHHHHHHHH----HhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhC
Q 044872 143 QLGDLS-TAKWIHGYVN----EAGK--GRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASN 210 (604)
Q Consensus 143 ~~g~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 210 (604)
....-+ .-..+...++ +.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+.+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 543211 1233333333 3332 247788999999999999999999887633222455555555444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.78 E-value=9.1 Score=28.54 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++...+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667777777666553 22222223445667899999999999999999999987765 467888888888888877
Q ss_pred CCCCCCHHHHHH
Q 044872 327 CGIQPNGNTFVG 338 (604)
Q Consensus 327 ~g~~p~~~t~~~ 338 (604)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 455555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=2.3 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCccCCc
Q 044872 404 WGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD-----KGIQKIRG 471 (604)
Q Consensus 404 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 471 (604)
...++.++...|+.+.+...++.++..+|-+...+..+..+|.++|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345566777889999999999999999999888999999999999999999999888764 37765543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.67 E-value=9.8 Score=28.42 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=59.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 044872 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 325 (604)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++...+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345667777776666553 222222233456678999999999999999999999887653 5677778877777777
Q ss_pred HCCCCCCHHHHHH
Q 044872 326 KCGIQPNGNTFVG 338 (604)
Q Consensus 326 ~~g~~p~~~t~~~ 338 (604)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.97 E-value=29 Score=32.75 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHhc
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMF----RRLLHRGLKPDSFSIVRVLTACTQ 143 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 143 (604)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +.+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34456678899999999998643 134456677776665554 555667889999888888888776
Q ss_pred CCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCC
Q 044872 144 LGDLS-TAKWIHGYVN----EAG--KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNG 211 (604)
Q Consensus 144 ~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 211 (604)
...-+ .-..+...++ +.| ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+.+.+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 65422 1223333333 333 33477888889999999999999998884322222355655554444433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.34 E-value=5.4 Score=33.20 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=14.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC
Q 044872 375 MVDLLGRSGQLDEAHELIKSMPM 397 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~ 397 (604)
+...|.+.|++++|+.+++.+|.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHCCHHHHHHHHhcCCc
Confidence 44556666666666666666643
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.45 E-value=19 Score=37.81 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=19.2
Q ss_pred chhHHHHHHH-----HHhcCChHHHHHHHHHHh
Q 044872 435 SGNYVLLSNI-----YSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 435 ~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~ 462 (604)
..++..|.++ +...|+|++|.+.++++.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 3455544433 378999999998888753
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.40 E-value=7.5 Score=29.18 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 044872 113 EEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD 174 (604)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (604)
-+..+-++.+...++.|++......|++|.+.+|+..|.++++-+...- .....+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3555666666777788888888888888888888888888888775542 222445655543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.27 E-value=13 Score=27.65 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
..-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345677777776666553 33333333455778899999999999999999999988765 47788888887777777
Q ss_pred HCCCCCCHHHHH
Q 044872 225 RENLKPEYYTMV 236 (604)
Q Consensus 225 ~~g~~p~~~t~~ 236 (604)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 45444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.64 E-value=14 Score=27.55 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
..-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||+..|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777776666553 333333334557788999999999999999999999888654 6677777777777776
Q ss_pred HCCCCCCHHHHH
Q 044872 225 RENLKPEYYTMV 236 (604)
Q Consensus 225 ~~g~~p~~~t~~ 236 (604)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 45444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.02 E-value=6.7 Score=31.18 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 314 VKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
.-+..+-++.+....+-|+.....+.|.+|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 445667777777788999999999999999999999999999999987543 44556766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 604 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 3e-06
Identities = 46/386 (11%), Positives = 104/386 (26%), Gaps = 18/386 (4%)
Query: 71 LLNLYVHCGYLADALKVFDDI----PDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRG 126
L + G A + + PD N + S + L+ + + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61
Query: 127 LKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKAR 186
P L + H K + +L G+ME A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 187 RVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMF-YNMQRENLKPEYYTMVGVLSACASL 245
+ + + + + + ++ +P + L +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV---VWN 302
+ L ++ + +A + V
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 303 AVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361
+ G + +A + + + +QP+ + + L G V E +N+ R
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 362 VFSLTPMIEHYGCMVDLLGRSGQLDEAHELI-KSMPMEP-NAIVWGALLAGCRLHKKTDL 419
+ + + ++ G ++EA L K++ + P A L + + K
Sbjct: 300 LCP--THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 420 AEHVLNQLIALEPWNSGNYVLLSNIY 445
A + I + P + Y + N
Sbjct: 358 ALMHYKEAIRISPTFADAYSNMGNTL 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 604 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.42 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.19 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.94 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.93 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.9 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.89 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.78 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.48 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.46 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.41 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.24 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.98 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.92 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.76 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.41 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.08 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.55 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.98 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.8e-21 Score=190.29 Aligned_cols=373 Identities=14% Similarity=0.114 Sum_probs=244.4
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhH
Q 044872 38 KACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEE 114 (604)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 114 (604)
..+.+.|++++|.+.++++++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 34455666666666666666553 22345555555666666666666666655432 234455556666666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 044872 115 AINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE 194 (604)
Q Consensus 115 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 194 (604)
|+..+......... +..............+................ .
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~ 132 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------------------------------P 132 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------------------------T
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccc--------------------------------c
Confidence 66666655553221 22222222222222222222222222222221 1
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044872 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLI 274 (604)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 274 (604)
.....+..........+....+...+.+..... +-+...+..+...+...++.+.|...+...++... .+...+..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 210 (388)
T d1w3ba_ 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHh
Confidence 223333334444445555555555555544431 12334444555556666666666666666655432 2455667777
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 044872 275 DMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 350 (604)
..|...|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+ +.|+ ..++..+..++...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 888888888888888877653 3556677788888999999999999999888 4564 567888888999999999
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+|.+.++..... .+.+...+..+...+.+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|...+++++
T Consensus 289 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988753 3455677888889999999999999999986 66665 5588889999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHhcCC
Q 044872 429 ALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 429 ~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+++|+++.+|..|+.+|.+.|+
T Consensus 367 ~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=6.2e-20 Score=182.68 Aligned_cols=355 Identities=13% Similarity=0.078 Sum_probs=283.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGN 181 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (604)
+...+.+.|++++|++.|+++.+..+ -+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 34556778888899988888877532 245677777788888899999999988888875 3467788889999999999
Q ss_pred HHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 044872 182 MEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFM 258 (604)
Q Consensus 182 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 258 (604)
+++|...+....+ .+...+..........+....+............ .+..............+....+.......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 9999999887754 3334455555566666777777766666655433 33344445555666777777777777777
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 044872 259 ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNT 335 (604)
Q Consensus 259 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 335 (604)
..... .+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|+..+++....+ +.+...
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 66542 3567778888999999999999999987653 356788889999999999999999999998853 345567
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCR 412 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~ 412 (604)
+..+...+...|++++|...|+.+.+. .| +...+..+...|...|++++|.+.++.. ..+.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 788888999999999999999998853 45 4678889999999999999999999887 33346778899999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.2e-13 Score=130.27 Aligned_cols=242 Identities=14% Similarity=0.021 Sum_probs=172.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044872 200 WSSMIQGYASNGFPKEALDMFYNMQRENLKP-EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYA 278 (604)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 278 (604)
+-.....+.+.|++++|+..|++..+. .| +..++..+..++...|+++.|...+..+++.... +...+..+...|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 98 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccc
Confidence 334566788899999999999998875 34 4556777777777888888888888777765432 4566666777777
Q ss_pred hcCCHHHHHHHHHhcCCCCccc---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044872 279 KCGRMAQACKVFREMKDKDQVV---WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
..|++++|.+.++.....+... +....... ...+.......+..+...+...++...
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHH
Confidence 7777777777776654321110 00000000 000000111112233445667788888
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
|....+...-.++...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|.+.++++++++|+
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 8877654333445677888889999999999999999987 4445 4668999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 434 NSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++.++..++.+|.+.|++++|.+.|++..+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998873
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.6e-12 Score=125.28 Aligned_cols=264 Identities=12% Similarity=0.021 Sum_probs=191.6
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKP-EYYTMVGVLSACASLG 246 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 246 (604)
.....|.+.|++++|...|+++.+ | +..+|..+...|...|++++|+..|.+..+. .| +...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccccc
Confidence 467778999999999999999754 3 4668999999999999999999999998874 34 4667778888999999
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
+++.|...+..+.+...... .......... . ..+.......+..+...+...+|.+.|.+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYA-HLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchH-HHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999887543211 1000000000 0 00111111122233445567788888888876
Q ss_pred CCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 044872 327 CGI-QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAI 402 (604)
Q Consensus 327 ~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 402 (604)
... .++...+..+...+...|++++|...|+..... .| +...|..+...|.+.|++++|.+.|++. ...| +..
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 322 235567778888899999999999999988753 34 4677888999999999999999999987 4455 466
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh-----------HHHHHHHHHhcCChHHHHH
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN-----------YVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~ 456 (604)
+|..+...|...|++++|+..|+++++++|++... +..+..++...|+.+.+..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999999999999988876543 3445666666666655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=9.6e-09 Score=99.09 Aligned_cols=226 Identities=14% Similarity=0.008 Sum_probs=145.2
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----cccH
Q 044872 238 VLSACASLGALELGVWASSFMERNEF--L---SNPVLGTTLIDMYAKCGRMAQACKVFREMKD-------KD----QVVW 301 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~ 301 (604)
+..++...|++++|...+..+.+... . .....+..+...|...|++..|...+..... +. ...+
T Consensus 57 lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~ 136 (366)
T d1hz4a_ 57 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 136 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHH
Confidence 33444444555555555444433110 0 0122334455566667777776666654321 11 1234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-----hHHH
Q 044872 302 NAVVSGLSMNGYVKVAFGVFGQLEKCGI----QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-----IEHY 372 (604)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~ 372 (604)
..+...+...|+++.|...+........ .....++......+...+...++...+........-... ...+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 4556677788888888888887765321 122345555666677788888888877765432221111 2345
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHc------cCCCCchhHHH
Q 044872 373 GCMVDLLGRSGQLDEAHELIKSM-PMEP-----NAIVWGALLAGCRLHKKTDLAEHVLNQLIA------LEPWNSGNYVL 440 (604)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~ 440 (604)
..+...+...|++++|.+.++.. ...| ....+..+...+...|+++.|...+++++. ..|....++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 55667788899999999999887 2222 234566778889999999999999998873 33555678899
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++.+|.+.|++++|.+.+++..+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=4e-08 Score=94.55 Aligned_cols=287 Identities=9% Similarity=0.024 Sum_probs=157.0
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----cchHHHHHHH
Q 044872 140 ACTQLGDLSTAKWIHGYVNEAGKGRN----VFVATSLVDLYAKCGNMEKARRVFDQMPE-----KD----IVSWSSMIQG 206 (604)
Q Consensus 140 ~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 206 (604)
.+...|++++|.++++..++.....+ ...++.+...|...|++++|...|++..+ ++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34556666666666666655432211 12344455555566666666555554422 11 1123333444
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCH
Q 044872 207 YASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS---NPVLGTTLIDMYAKCGRM 283 (604)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 283 (604)
+...|++..|...+.+.... ....+... ....+..+...|...|++
T Consensus 101 ~~~~~~~~~a~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQL-------------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------------------hHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence 44555555555544443220 00011111 112334455566666666
Q ss_pred HHHHHHHHhcCC----C----CcccHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcH
Q 044872 284 AQACKVFREMKD----K----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC----GIQPN--GNTFVGLLCGCTHAGLV 349 (604)
Q Consensus 284 ~~A~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~ 349 (604)
+.+...+..... . ....+..+...+...+...++...+.+.... +..+. ...+......+...|++
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence 666666655432 0 1123334445566667777777766655431 11111 12344455567778888
Q ss_pred HHHHHHHHHchhhcCCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChHH
Q 044872 350 DEGRQFFNSMSRVFSLTP--MIEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPNA-IVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~~~~~~ 419 (604)
++|...++...+...-.+ ....+..+...|...|++++|.+.+++. +..|+. .+|..+...+...|++++
T Consensus 230 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 309 (366)
T d1hz4a_ 230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 309 (366)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH
Confidence 888888887664311111 1334556777888889998888888765 333433 367777888899999999
Q ss_pred HHHHHHHHHccCCCC---------chhHHHHHHHHHhcCChHHHHHH
Q 044872 420 AEHVLNQLIALEPWN---------SGNYVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 420 a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~ 457 (604)
|.+.+++++++.+.. ...+..+...+...++.+++.+-
T Consensus 310 A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 310 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999888754321 12233445556666777776553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=2.5e-08 Score=94.39 Aligned_cols=185 Identities=10% Similarity=0.009 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C-cccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---D-QVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+.+.+. + ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566667776665544445566666667777777777777777765431 2 2256666666667777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 044872 323 QLEKCGIQPNGNTFVGLLC-GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PM 397 (604)
Q Consensus 323 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 397 (604)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...+..+++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 77664321 2222322222 233356677777777766653 2233556666667777777777777777664 23
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 398 EPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 398 ~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.|+ ...|...+.--..+|+.+.+..+++++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 332 3466666666666677777777777666665544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=8.3e-09 Score=95.00 Aligned_cols=199 Identities=12% Similarity=-0.064 Sum_probs=117.8
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHh
Q 044872 234 TMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSM 310 (604)
Q Consensus 234 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 310 (604)
++..+..++.+.|+++.|...+...++... .++.+++.+..+|.+.|++++|...|+++.+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 444445556666666666666666666542 2566777778888888888888888877753 245577777788888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC----H
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ----L 385 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~ 385 (604)
.|++++|++.|++..+. .|+ ......+..++...+..+....+....... .+....++ ++..+..... .
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHH
Confidence 88888888888888773 343 333333334444555554444444444321 22222222 2222222111 2
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 386 DEAHELIKSM-PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
+.+...+... ...|+. .+|..+...+...|+++.|...|+++++.+|++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222111 112332 36667778888889999999999999988887754443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=9.3e-10 Score=106.00 Aligned_cols=229 Identities=10% Similarity=-0.048 Sum_probs=158.0
Q ss_pred hCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 044872 209 SNGFPKEALDMFYNMQRENLKP-EYYTMVGVLSACASLG--ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQ 285 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 285 (604)
..|.+++|+.+++...+. .| +...+.....++...+ +++.+...+..+++.........+......+...|..++
T Consensus 85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 344567788888877764 34 3444444544554444 477888888887776543322333445567777899999
Q ss_pred HHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 044872 286 ACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 286 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 362 (604)
|...++.+... +..+|+.+...+.+.|++++|...+.+... +.|+.. .+...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 99999988764 456788888888888888887766655444 223322 2223344455666677777766532
Q ss_pred cCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 363 FSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 363 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
-+++...+..+...+...|+.++|.+.+.+. +..|+ ..+|..+...+...|+.++|...++++++++|.+...|..
T Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 2334445566677788889999999988877 55664 4488888889999999999999999999999988888888
Q ss_pred HHHHHH
Q 044872 441 LSNIYS 446 (604)
Q Consensus 441 l~~~~~ 446 (604)
|...+.
T Consensus 316 L~~~~~ 321 (334)
T d1dcea1 316 LRSKFL 321 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=6.7e-09 Score=98.67 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044872 269 LGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNG-YVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGC 343 (604)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 343 (604)
.++.+...+.+.+..++|.++++.+.+ | +..+|+....++...| ++++|+..+++..+ ..|+ ..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHH
Confidence 444455556666666777766666653 2 3455666666666654 36777777777666 3443 45666666666
Q ss_pred hccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----
Q 044872 344 THAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKK---- 416 (604)
Q Consensus 344 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~---- 416 (604)
...|++++|+..++.+.+. .| +...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 7777777777777766632 33 3566666677777777777777777666 3344 45566655555444443
Q ss_pred --hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 417 --TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 417 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+++|...+.++++++|++..++..++.++...| .+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 466777777777777777777777776665444 4566666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=3.7e-09 Score=97.49 Aligned_cols=193 Identities=11% Similarity=0.029 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCG 342 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 342 (604)
..++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|+..|+++.+ +.|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHH
Confidence 34566778899999999999999998763 4678999999999999999999999999998 5564 4678888889
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----hcCC
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCR----LHKK 416 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~----~~~~ 416 (604)
+...|++++|...|+...+. .| +......+...+.+.+..+.+..+.... ...++...++. +..+. ..+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHH
Confidence 99999999999999998854 34 3444334444555566555555444433 11222222222 22221 1222
Q ss_pred hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 417 TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.+.+...+.......|....+|..++.+|...|++++|.+.+++..+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3444444444444556667788999999999999999999999998754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.8e-08 Score=95.55 Aligned_cols=219 Identities=11% Similarity=0.105 Sum_probs=127.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044872 199 SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYA 278 (604)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 278 (604)
.++.+...+.+.+.+++|+++++++.+. .|+ +...|+....++.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~----------------------------------~~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCC----------------------------------ChHHHHHHHHHHH
Confidence 4555556666667777777777776663 343 2333444444444
Q ss_pred hcC-CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 044872 279 KCG-RMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGR 353 (604)
Q Consensus 279 ~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 353 (604)
..| ++++|...++...+ .+..+|+.+...+...|++++|++.++++.+ ..| +...|..+...+...|++++|.
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHH
Confidence 443 35555555555432 2445566666666666666666666666666 334 3456666666666666777777
Q ss_pred HHHHHchhhcCCCC-chHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 044872 354 QFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQ------LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVL 424 (604)
Q Consensus 354 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 424 (604)
+.++.+.+. .| +...|+.+..++.+.+. +++|.+.+.+. ...| +...|..+...+.. ...+++...+
T Consensus 167 ~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLL 242 (315)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHH
T ss_pred HHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHH
Confidence 776666632 33 34455555555544443 56777777665 4445 56677777665544 4467888888
Q ss_pred HHHHccCCCC--chhHHHHHHHHHhc--CChHHHHHHHH
Q 044872 425 NQLIALEPWN--SGNYVLLSNIYSAS--HKWNDAAKIRS 459 (604)
Q Consensus 425 ~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~A~~~~~ 459 (604)
+.++++.|+. +..+..++.+|... +..+.+...++
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888877764 34455667776543 33333443333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=1.4e-07 Score=89.09 Aligned_cols=182 Identities=8% Similarity=-0.029 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044872 281 GRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 281 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+++.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 445788888887543 3556788888899999999999999999988432223457888999999999999999999
Q ss_pred HHchhhcCCCCchHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 357 NSMSRVFSLTPMIEHYGCMVDL-LGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 357 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
+.+.+. .+.+...|...... +...|+.+.|..+|+.+ ... .+...|...+..+...|+.+.|..+|+++++..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998853 22234445444443 34468999999999988 222 35679999999999999999999999999987765
Q ss_pred Cch----hHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 434 NSG----NYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 434 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 5667777778889999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=1.9e-09 Score=103.81 Aligned_cols=247 Identities=9% Similarity=-0.046 Sum_probs=173.3
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHH-H---HHHHHH-------HccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 207 YASNGFPKEALDMFYNMQRENLKPEYYTM-V---GVLSAC-------ASLGALELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~---~ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
....+..++|++++++..+. .|+..+. + .++... ...+.++.+...++.+.+.... +...+..+..
T Consensus 39 ~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~ 115 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 115 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhH
Confidence 33334457888888888763 5665432 1 122222 2345577888888888876533 5566666666
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CCcccHHHH-HHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 044872 276 MYAKCG--RMAQACKVFREMKD---KDQVVWNAV-VSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGL 348 (604)
Q Consensus 276 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 348 (604)
++...+ ++++|...+.++.+ ++...|... ...+...+..++|+..++++.. ..| +...+..+..++...|+
T Consensus 116 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcC
Confidence 666655 48899998888754 345555443 4567778999999999998887 445 45678888888888888
Q ss_pred HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044872 349 VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQ 426 (604)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 426 (604)
+++|...+....+. .|. ...+...+...+..+++...+... ...++...+..+...+...++.+.|...+.+
T Consensus 194 ~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 194 QPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88776666554432 122 112333455566777777776665 2223444666677778888999999999999
Q ss_pred HHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 427 LIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 427 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++.+|.+..++..++.+|.+.|++++|.+.+++..+.
T Consensus 268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=2.4e-07 Score=81.24 Aligned_cols=97 Identities=10% Similarity=-0.005 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
|+...+......|.+.|++++|++.|++. ...| +...|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44455555566666777777777777655 3333 455677777777777777777777777777777777777777777
Q ss_pred HHhcCChHHHHHHHHHHhh
Q 044872 445 YSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~ 463 (604)
|.+.|++++|...++++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=5.7e-07 Score=70.91 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=71.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45667788888888888776 3344 556788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhC
Q 044872 454 AAKIRSMMGDK 464 (604)
Q Consensus 454 A~~~~~~m~~~ 464 (604)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888888764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.7e-06 Score=74.83 Aligned_cols=140 Identities=9% Similarity=-0.105 Sum_probs=96.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 352 (604)
...+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34567788888888888888888888888888888888888888888888887 4454 46777777888888888888
Q ss_pred HHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 353 RQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
...|+..... .+++... .|...|. ..+++ ..++..+..++...|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888876542 1111100 0000000 01111 2345566667888888888888888888887
Q ss_pred CCC
Q 044872 432 PWN 434 (604)
Q Consensus 432 p~~ 434 (604)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.4e-06 Score=68.57 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=85.1
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKK 416 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 416 (604)
...+...|++++|+..|....+. .| +...|..+..+|...|++++|++.+++. .+.| +...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 45567788888888888888753 34 4667888888888999999999988887 3334 66789999999999999
Q ss_pred hHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 417 TDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
+++|+..++++++++|+++..+..+.++-+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999888888777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=2e-07 Score=72.92 Aligned_cols=88 Identities=20% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCCh
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 451 (604)
.+...+.+.|++++|...|++. ...| +..+|..+...+...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3456788899999999999987 4455 5679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 044872 452 NDAAKIRSMM 461 (604)
Q Consensus 452 ~~A~~~~~~m 461 (604)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2e-06 Score=74.44 Aligned_cols=119 Identities=12% Similarity=0.031 Sum_probs=87.6
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.+...|+++.|++.|..+. +|+...|..+...|...|++++|.+.|++. .+.| +...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3456677777777776542 345566667777777777777777777776 4444 45578888888888888888
Q ss_pred HHHHHHHHHccCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 420 AEHVLNQLIALEPWNS----------------GNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|...|+++++..|.+. ..+..++.+|.+.|++++|.+.+....+..
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888888876544332 456788999999999999999999887643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=2.6e-06 Score=79.28 Aligned_cols=191 Identities=11% Similarity=-0.006 Sum_probs=127.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC----GIQP-NGNTFVG 338 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ 338 (604)
....|...|++++|...|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+. |..+ ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45667788888888888876643 12 247788888899999999999998876542 2111 1245556
Q ss_pred HHHHHh-ccCcHHHHHHHHHHchhhc---CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CC----CH-HHH
Q 044872 339 LLCGCT-HAGLVDEGRQFFNSMSRVF---SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PM---EP----NA-IVW 404 (604)
Q Consensus 339 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p----~~-~~~ 404 (604)
+...|. ..|++++|.+.++...+-. +..+. ..++..+...|...|++++|.+.|++. .. .+ .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998775421 11221 345777889999999999999999886 11 11 11 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCch-----hHHHHHHHHHh--cCChHHHHHHHHHHhh
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSG-----NYVLLSNIYSA--SHKWNDAAKIRSMMGD 463 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m~~ 463 (604)
...+..+...|+.+.|...+++..+.+|..+. ....++.++.. .+++++|...|+.+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 44455667889999999999999999876433 23445555554 3568888888875543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=6.9e-07 Score=78.14 Aligned_cols=117 Identities=9% Similarity=-0.147 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 044872 331 PNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALL 408 (604)
Q Consensus 331 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 408 (604)
|+...+......+...|++++|+..|..+.+. -+.+...|..+..+|.+.|++++|.+.|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66666677777788888888888888877743 1234667778888888888888888888877 66664 55888888
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
.++...|++++|...++++++++|++...+...+..+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 88999999999999999998888766555554444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.6e-06 Score=72.60 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=90.8
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKK 416 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 416 (604)
...|.+.|++++|...|+.+.+. .| +...|..+...|...|++++|.+.|++. ...| +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 45677888888888888888753 34 4677888888899999999999999887 4455 45689999999999999
Q ss_pred hHHHHHHHHHHHccCCCCchhHHHHHHHHH--hcCChHHHHHH
Q 044872 417 TDLAEHVLNQLIALEPWNSGNYVLLSNIYS--ASHKWNDAAKI 457 (604)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 457 (604)
+++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888877765543 34446665544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.2e-06 Score=73.36 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWN 452 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 452 (604)
....|.+.|++++|...|++. ...| +...|..+...+...|+++.|...|+++++++|++..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 456688999999999999988 4445 56689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 044872 453 DAAKIRSMMGDK 464 (604)
Q Consensus 453 ~A~~~~~~m~~~ 464 (604)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999874
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.4e-06 Score=67.46 Aligned_cols=107 Identities=16% Similarity=-0.032 Sum_probs=80.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 044872 337 VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQL---DEAHELIKSM-PMEPNA---IVWGALLA 409 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~ 409 (604)
..+++.+...+++++|.+.|+..... -+.+..++..+..+|.+.++. ++|.++++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35667777888888999888888753 133567777788888765544 4688888886 444433 36778888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
+|...|++++|.+.|+++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999987766665444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=8.3e-06 Score=75.74 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=127.9
Q ss_pred CHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 044872 282 RMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 282 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
++++|..+|.+ ....|...|++++|.+.|.+..+. +-.|+ ..+|..+..+|...|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 45667666554 467788999999999999988652 22232 257888899999999999999999
Q ss_pred HHchhhcCCCCc----hHHHHHHHHHHhh-cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 044872 357 NSMSRVFSLTPM----IEHYGCMVDLLGR-SGQLDEAHELIKSM-------PMEPN-AIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 357 ~~~~~~~~~~p~----~~~~~~li~~~~~-~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
+...+-+.-..+ ...+..+...|.. .|++++|.+.+++. +..+. ..++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 976643211112 3445566666654 69999999999876 11121 23678888899999999999999
Q ss_pred HHHHHccCCCCch-------hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 424 LNQLIALEPWNSG-------NYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 424 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
++++....|.++. .+...+..+...|+++.|.+.+++..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999987766542 34566777888999999999999887643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=8.7e-06 Score=68.69 Aligned_cols=84 Identities=11% Similarity=-0.037 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
.|+.+..+|.+.|++++|...++.. .+.| ++..|..+..++...|+++.|...|+++++++|+++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4666778899999999999999887 4455 6678999999999999999999999999999999999999998888776
Q ss_pred CChHHH
Q 044872 449 HKWNDA 454 (604)
Q Consensus 449 g~~~~A 454 (604)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.7e-05 Score=66.80 Aligned_cols=63 Identities=11% Similarity=-0.111 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+|+.+..+|.+.|+++.|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 356677888999999999999999999999999999999999999999999999999999874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=3.5e-05 Score=63.54 Aligned_cols=63 Identities=10% Similarity=-0.118 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+|..+..+|.+.|+++.|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366678888899999999999999999999999999999999999999999999999988764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=9.4e-06 Score=63.92 Aligned_cols=92 Identities=9% Similarity=-0.065 Sum_probs=76.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCC--chhHHHHHHHH
Q 044872 373 GCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHK---KTDLAEHVLNQLIALEPWN--SGNYVLLSNIY 445 (604)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 445 (604)
..+++.+...+++++|.+.|++. ...| +..++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45777888999999999999988 4444 5668888888887644 5567999999999988755 34789999999
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 044872 446 SASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~ 464 (604)
.+.|++++|.+.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999874
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.06 E-value=0.00051 Score=62.10 Aligned_cols=227 Identities=9% Similarity=-0.104 Sum_probs=129.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS----LGALELGVWASSFMERNEFLSNPVLGT 271 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (604)
|+..+..|...+.+.+++++|++.|++..+.| |...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34566667777777888888888888877665 33333333333322 234444444444444333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--Hhc
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSM----NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG--CTH 345 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~ 345 (604)
+...+..+...+.. ..+.+.|...+++....|..+....+ ..... ...
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~ 122 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVV 122 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcc
Confidence 12222222222221 34556666666666665432211111 11111 122
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDEAHELIKSMPMEPNAIVWGALLAGCRL----HKKT 417 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~ 417 (604)
......+...+..... ..+...+..|...|.. ..+...+..+++......+...+..|...+.. ..+.
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 3445556665555442 2334455555555554 45566666666665223356666556555554 5689
Q ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHhhCCC
Q 044872 418 DLAEHVLNQLIALEPWNSGNYVLLSNIYSA----SHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 466 (604)
+.|...|++..+.+ ++.++..|+.+|.+ ..+.++|.+.|++..+.|.
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999999998775 56788999999986 4489999999999988775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.99 E-value=5.9e-05 Score=63.25 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
.|+.+..+|.+.|++++|+..++.. ...| +..+|..+..++...|++++|...|+++++++|+++.+...+..+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4566777889999999999999887 4444 5668999999999999999999999999999999999988888887776
Q ss_pred CChHH-HHHHHHHHh
Q 044872 449 HKWND-AAKIRSMMG 462 (604)
Q Consensus 449 g~~~~-A~~~~~~m~ 462 (604)
+...+ ..+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 65543 445555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=2.6e-05 Score=65.65 Aligned_cols=85 Identities=13% Similarity=0.012 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|+++.|...|+++++++|++..++..+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456677788899999999999999887 6566 45689999999999999999999999999999999888888877765
Q ss_pred hcCChHH
Q 044872 447 ASHKWND 453 (604)
Q Consensus 447 ~~g~~~~ 453 (604)
+.....+
T Consensus 157 ~l~~~~~ 163 (169)
T d1ihga1 157 KIKAQKD 163 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=5e-05 Score=63.79 Aligned_cols=64 Identities=8% Similarity=-0.091 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...|..+...+.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4477788888999999999999999999999999999999999999999999999999999874
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=2e-05 Score=62.75 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch-------hHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG-------NYVLLS 442 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 442 (604)
+..+...|.+.|++++|++.|++. ...| +..+|..+..+|.+.|+++.|...++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788899999999999877 4444 5678999999999999999999999999999887764 566677
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 044872 443 NIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..+...+++++|.+.+.+...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 888889999999999988765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.0082 Score=55.42 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=21.6
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 454 (604)
+.+++......++...+.+ +......|..+|...++++.-
T Consensus 260 k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHH
Confidence 3444444445554443322 335666777777777775443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.89 E-value=6.1e-05 Score=61.98 Aligned_cols=127 Identities=8% Similarity=-0.118 Sum_probs=89.7
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL 378 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 378 (604)
..+......+.+.|++.+|+..|.+.... .|... ............ .....+|..+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~--------~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKK--------NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhh--------hHHHHHHhhHHHH
Confidence 34555667778888888888888887762 11100 000000000000 0113456778888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...|+++++++|+++.+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999987 4455 56799999999999999999999999999999999888777765543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.87 E-value=0.00016 Score=60.50 Aligned_cols=62 Identities=8% Similarity=-0.045 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+|..+..++...|++++|+..++++++++|++..+|..++.+|...|++++|...++++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999999999999999999999999999999874
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.81 E-value=0.0032 Score=56.49 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhC
Q 044872 98 SWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ----LGDLSTAKWIHGYVNEAG 161 (604)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g 161 (604)
.|..|...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+...+....+.+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 44444445555556666666666555543 33333333333332 334555555555554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=8e-05 Score=62.92 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=82.2
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQL-DEAHELIKSMPMEPNAIVWGALLAGCRLHKKT 417 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 417 (604)
........|++++|.+.|.....-+.-.+-... ..+.+ .....-++. .....+..+...+...|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 334667788888888888887743221110000 00100 000011111 1234678888999999999
Q ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCccC
Q 044872 418 DLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD-----KGIQKI 469 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~ 469 (604)
+.|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++.+ .|+.|.
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999999854 466543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.011 Score=54.46 Aligned_cols=282 Identities=13% Similarity=0.079 Sum_probs=150.3
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHH
Q 044872 28 PTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYI 107 (604)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 107 (604)
||..--..+..-|.+.|.++.|..++..+ .-+..++..|.+.+++..|.+++.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 45555566677777888888888887643 23456667777788888887777654 35667888888877
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 044872 108 NEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARR 187 (604)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 187 (604)
+.....-| .+.......+......++..+-..|..+....+++..... -..+..+++.|+..|++.+. ++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHH
Confidence 77655433 2222333445566677788888888888888877776543 24566777888888888653 33333
Q ss_pred HHccCCC-C----------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 044872 188 VFDQMPE-K----------DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASS 256 (604)
Q Consensus 188 ~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 256 (604)
.+..... - ....|..++-.|.+.|++++|..+.- .. .++..-....+..+.+..+.+..-++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 3333211 1 11235556666666666666655432 21 2333333344555566666665555555
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044872 257 FMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTF 336 (604)
Q Consensus 257 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 336 (604)
..++. ++...+.|+......-+.....+.| .+.++.......++.....| +....
T Consensus 229 ~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~------------------~k~~~l~li~p~Le~v~~~n---~~~vn 283 (336)
T d1b89a_ 229 FYLEF----KPLLLNDLLMVLSPRLDHTRAVNYF------------------SKVKQLPLVKPYLRSVQNHN---NKSVN 283 (336)
T ss_dssp HHHHH----CGGGHHHHHHHHGGGCCHHHHHHHH------------------HHTTCTTTTHHHHHHHHTTC---CHHHH
T ss_pred HHHHc----CHHHHHHHHHHhccCCCHHHHHHHH------------------HhcCCcHHHHHHHHHHHHcC---hHHHH
Confidence 44442 1223344444444444444444433 34455555555555544433 33566
Q ss_pred HHHHHHHhccCcHHHHHHHHH
Q 044872 337 VGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~ 357 (604)
+++...|...++++.-++..+
T Consensus 284 ~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 284 ESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCcchhHHHHHHHH
Confidence 666677777777655444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.73 E-value=0.00011 Score=56.68 Aligned_cols=91 Identities=11% Similarity=-0.057 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK 178 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (604)
+-.+...+.+.|++++|+..|++.+..... +..+|..+..++...|++++|...++.+++.. +.+..++..|...|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 334555667777777777777777765321 45566666667777777777777777777664 3356666667777777
Q ss_pred cCCHHHHHHHHcc
Q 044872 179 CGNMEKARRVFDQ 191 (604)
Q Consensus 179 ~g~~~~A~~~~~~ 191 (604)
.|++++|.+.|++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7777777766654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=4.6e-06 Score=84.01 Aligned_cols=108 Identities=10% Similarity=-0.089 Sum_probs=44.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCR 412 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~ 412 (604)
.+..+...+...|+.++|...+...... .| ...+..+.+++...|++++|...|++. .+.|+. ..|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444455555555555544433311 11 123444555555555555555555555 333432 35555555555
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
..|+..+|...|.+.+..+|+.+.++..|...+.
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.56 E-value=0.00017 Score=59.40 Aligned_cols=88 Identities=13% Similarity=-0.015 Sum_probs=64.9
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC-------C-
Q 044872 377 DLLGRSGQLDEAHELIKSM----PMEPN----------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW-------N- 434 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~-------~- 434 (604)
..+.+.|++++|++.|++. +..|+ ...|+.+..++...|+++.|...+++.+++.|. .
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3455566777776666655 22222 357788888899999999999999988865332 1
Q ss_pred ---chhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 435 ---SGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 435 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..++..++.+|...|++++|.+.|++..+.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 236788999999999999999999998763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=3.8e-05 Score=62.58 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=58.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 380 GRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRL----------HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
.|.+.+++|.+.|+.. ...| +..+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444555555555554 2233 33344444444432 3456889999999999999999999999999988
Q ss_pred cCC-----------hHHHHHHHHHHhhC
Q 044872 448 SHK-----------WNDAAKIRSMMGDK 464 (604)
Q Consensus 448 ~g~-----------~~~A~~~~~~m~~~ 464 (604)
.|+ +++|.+.|++..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 764 68888888888763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.0004 Score=51.45 Aligned_cols=71 Identities=11% Similarity=0.011 Sum_probs=54.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM----P----MEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
-+...+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4556666777777777776654 1 1233 45788899999999999999999999999999998888777543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.41 E-value=7.4e-05 Score=60.77 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 416 KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
+++.|.+.|+++++++|++...+..|.... .|.+++.+..++|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 468899999999999999877766665553 55566666555553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00086 Score=52.79 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.+...|.+.|++++|+..|.+.++. .| +...+..+..+|...|++++|.+.++.+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3455566667777777777666663 33 34556666666666666666666666655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.24 E-value=0.00036 Score=62.82 Aligned_cols=124 Identities=9% Similarity=-0.015 Sum_probs=76.8
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 386 (604)
.+.|++++|+..+++.++ ..| |...+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 356888888888888877 445 446777777888888888888888887774 3454 334444444444444444
Q ss_pred HHHHHHHhC--CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 387 EAHELIKSM--PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 387 ~A~~~~~~~--~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
++..-.... ...|+. ..+......+...|+.++|.+.++++.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 433322221 112322 233344455677788888888888888877766543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=8.6e-05 Score=74.39 Aligned_cols=87 Identities=11% Similarity=-0.101 Sum_probs=31.4
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCC
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGY 313 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 313 (604)
.+...+.+.++.+.|...+....+.. ....+..+.+.+...|++++|...|++..+ | +...|+.+...|...|+
T Consensus 125 ~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~ 201 (497)
T d1ya0a1 125 QLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD 201 (497)
T ss_dssp ------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC
T ss_pred HhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC
Confidence 33334444444444444443333211 112333444555555555555555554432 2 23445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 044872 314 VKVAFGVFGQLEK 326 (604)
Q Consensus 314 ~~~A~~~~~~m~~ 326 (604)
..+|+..|.+...
T Consensus 202 ~~~A~~~y~ral~ 214 (497)
T d1ya0a1 202 HLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.09 E-value=0.0032 Score=52.67 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchh----hcCCCCchHH
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSR----VFSLTPMIEH 371 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 371 (604)
..+..+...+...|++++|+..++++.. ..| +...+..++.++...|+.++|.+.|+.+.+ ..|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4566677778888888888888888877 445 556777888888888888888888776633 3477777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.98 E-value=0.0028 Score=51.74 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM--------PMEPN-----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.|+.+..+|...|++++|.+.+++. ...++ ...+..+..+|...|++++|...|++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4555666666667766666655543 12222 1256677888999999999999999999876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.98 E-value=0.00029 Score=63.47 Aligned_cols=120 Identities=9% Similarity=0.050 Sum_probs=85.2
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a 420 (604)
....|++++|+..++...+. -+.+...+..+...|+..|++++|.+.++.. ...|+. ..+..+...+...+..+.+
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 34679999999999999853 2346789999999999999999999999988 556654 4555555555443333332
Q ss_pred HHHHHHHHc-cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 421 EHVLNQLIA-LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 421 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
......... .+|++...+...+..+...|+.++|.+.+.++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111111 23444456667788899999999999999998774
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0024 Score=46.93 Aligned_cols=63 Identities=10% Similarity=-0.171 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-------SGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..+-.+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344467788999999999999999998765443 357889999999999999999999999874
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.76 E-value=0.063 Score=40.14 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=102.8
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 387 (604)
+...|..++..++..+...+ .+..-|+.++.-....-+-+-..+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34568888888888888763 2455677777666666666777777777765544433 445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 388 AHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 388 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
...-+-.+. .+......-+....++|+-+.-.++++.+++.+.-++....-++++|-+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 544444443 234455666778889999999999999988866667889999999999999999999999999999985
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=1.3 Score=42.26 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=27.7
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 044872 173 VDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
+..+.+.++++.....+..-+ .+...-.....+..+.|+..+|...+...-..
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 444555666666555543321 12223334455566666666666666555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.41 E-value=0.54 Score=36.05 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=39.1
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 044872 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK----CGNMEKAR 186 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~ 186 (604)
++++|+..|++..+.|- ......+. .....+.++|...+....+.| ++.....|..+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45677777777766552 22222222 233456667777777666655 34445555555544 23344555
Q ss_pred HHHccC
Q 044872 187 RVFDQM 192 (604)
Q Consensus 187 ~~~~~~ 192 (604)
+.|++.
T Consensus 80 ~~~~~a 85 (133)
T d1klxa_ 80 QYYSKA 85 (133)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.23 E-value=0.51 Score=36.20 Aligned_cols=81 Identities=11% Similarity=-0.038 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh----cCChHHHH
Q 044872 384 QLDEAHELIKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA----SHKWNDAA 455 (604)
Q Consensus 384 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 455 (604)
+.++|.+++++.-..-++.....|...|.. ..|.++|.+.|++..+.+ ++.+...|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 444555555444111233333333333332 346778888888877654 45677778888776 45788888
Q ss_pred HHHHHHhhCCC
Q 044872 456 KIRSMMGDKGI 466 (604)
Q Consensus 456 ~~~~~m~~~~~ 466 (604)
+++++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88888887765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.38 Score=36.17 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHccCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 416 KTDLAEHVLNQLIALEPWNS-GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.++|+.++++++..+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34455666666655555443 3555566666666666666666666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.08 E-value=1.2 Score=33.37 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 384 QLDEAHELIKSM-PMEP-NA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 384 ~~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
+.++++.++++. ...| +. ..|--|.-+|.+.|+++.|.+.++++++.+|++..+.
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 345666666665 2233 33 3666677788999999999999999999999886543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.61 E-value=3.6 Score=30.52 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=69.0
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH----------------------hcCChHHHHHHhccCCCCCccc
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYV----------------------HCGYLADALKVFDDIPDKNVVS 98 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----------------------~~g~~~~A~~~f~~~~~~~~~~ 98 (604)
...|..+++.++.....+.. +..-+|-.|--.. +|+.+......+-.+. .+...
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n-~~se~ 88 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNEH 88 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc-chHHH
Confidence 34566777777777766643 2333333332222 2333333333332222 23344
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
.+.-++.+.++|+-++-.++++.+.+. -+|++.....+..+|.+.|+..++..++.++-+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 556667777777777777777776553 456777777777778888888777777777777664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.55 E-value=1.4 Score=30.95 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556777788888888999999999999999999999999999999986543 34556666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.98 E-value=3.8 Score=28.72 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044872 112 LEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLV 173 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (604)
.-+..+-+..+...++.|++....+.|+||.+.+|+..|.++++-+.... .++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33556666777777788999999999999999999999999988776543 22344555544
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