Citrus Sinensis ID: 044915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHEEcccccccccHHHHHHHHHHHccccccccccHHHcccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEccccEEEEEccccccEEEEEEcccHHHccccccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHEHccccccccHHHHcccccccccccccccccccccccEEcccccEcHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHccccccccccccccHHHcccccccccccccccccccEEEEEccccccccEEEEEEEEccccEEEEEEcccccEEEEEcHHHccccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
massinlhtlqgpllqshflgqnqvsyrpkkpylatpkqpstvlkpcakfdlfeimggrglcngekGIELELKRNvteqesqvadkeeessastampstlsvpedafekemmgltggfpggekgLQQFieqnpppkkpvtadsgdvvaltttrkpkppewpllmpgmfaivknpnnpfymyCGIVqritdgkagvlfeggnwdRLITFRLDelerrekgppgrnpksAVLEGMIKKQE
Flexible Loop (DISEMBL)
MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYlatpkqpstvlkPCAKFDLFEIMGGRGLCNGEKGIELELKrnvteqesqvadkeeessastampstlSVPEDAFEKEMMGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALtttrkpkppewpllMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLdelerrekgppgrnpksavlegmikkqe
Low Complexity Region (SEG)
MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQE
Disordered region (IsUnstruct)
*************LLQSHFLG********************TVLKPCAKFDLFEIMGGRGLCNGEKGIEL****************************************************************************************EWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLD***************************
Disordered Region (DISOPRED)
***S****TLQGPLLQSHFLGQNQ*************************FDLFEIMGGRGLCNGEK***************************************AFEKEMMGLTGGFPGGEKGLQQF******************************EWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL*********************GMIK***
Disordered Region (DISEMBL)
MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGRGLCNGEKGIELELKRNV***********************LSVPEDAFEKEMMGLTGGFPGGEKGLQQFIEQNP**********GDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELER**********KSAVLEGMIKKQE
Disordered Region (DISPRO)
**S*INLHTLQGPLLQSHFLGQNQVSYRP***YLATP*QPSTVLKPCAKFDLFEIMGGRGLCNGEKGIELELKRN**************************VPEDAFEKEMMGLTGGFPGGEKGLQQFIEQNPPPKK***************RKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPP*RNPK******M*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGRGLCNGEKGIxxxxxxxxxxxxxxxxxxxxxSSASTAMPSTLSVPEDAFEKEMMGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
255537801	238	conserved hypothetical protein [Ricinus	0.966	0.966	0.663	1e-83
388516507	234	unknown [Lotus japonicus]	0.957	0.974	0.607	9e-75
217075232	244	unknown [Medicago truncatula]	0.983	0.959	0.585	9e-75
357514669	244	hypothetical protein MTR_8g032260 [Medic	0.983	0.959	0.585	1e-74
224075114	229	predicted protein [Populus trichocarpa]	0.941	0.978	0.654	1e-74
147767601	231	hypothetical protein VITISV_003162 [Viti	0.962	0.991	0.621	1e-74
224053775	225	predicted protein [Populus trichocarpa]	0.915	0.968	0.675	7e-72
297799602	250	hypothetical protein ARALYDRAFT_914207 [	0.995	0.948	0.607	1e-71
15236659	250	uncharacterized protein [Arabidopsis tha	0.995	0.948	0.595	1e-70
449462539	242	PREDICTED: uncharacterized protein LOC10	0.983	0.966	0.619	1e-69

>gi|255537801|ref|XP_002509967.1| conserved hypothetical protein [Ricinus communis] gi|223549866|gb|EEF51354.1| conserved hypothetical protein [Ricinus communis]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/235 (66%), Positives = 187/235 (79%), Gaps = 5/235 (2%)

Query: 1   MASSINLHTLQGPLLQSHFLGQNQ-VSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGR 59
           MASSI   TLQG LL+SHFLGQN  +  RP +PY + PK+    LKPCAKFDLFE +GGR
Sbjct: 1   MASSI---TLQGTLLRSHFLGQNNSLLNRPNRPYSSIPKESRFKLKPCAKFDLFEFLGGR 57

Query: 60  GLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPS-TLSVPEDAFEKEMMGLTGGF 118
           GLCNGE+GI+ ELKR+  E  S     +EE+S + A  S   +VPE+AFEKE+MGLTGGF
Sbjct: 58  GLCNGEQGIQQELKRDAAEASSSSVAAQEENSGAAAQASENENVPENAFEKELMGLTGGF 117

Query: 119 PGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPF 178
           PGGEKGL++FIE+NPPPKK    DS  ++ + T++KPK PE PLLMPGM AIV N N+P+
Sbjct: 118 PGGEKGLKKFIEENPPPKKQSAIDSVRILEIATSKKPKAPELPLLMPGMIAIVSNSNSPY 177

Query: 179 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGM 233
           YMYCGIVQRITDGKA VLFEGGNWDRLITFRL+EL+RREKGPPG+NPKS ++EG+
Sbjct: 178 YMYCGIVQRITDGKAAVLFEGGNWDRLITFRLEELQRREKGPPGKNPKSVIIEGL 232

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516507|gb|AFK46315.1| unknown [Lotus japonicus]

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/242 (60%), Positives = 180/242 (74%), Gaps = 14/242 (5%)

Query: 1   MASSINLHTLQGPLLQSHFLGQNQVSY-RPKKPYLATPKQPSTVLKPCAKFDLFEIMGGR 59
           M+S   LH+L G LL+S FLGQ+ +++  P+      P      ++PCAKF+L +IMGGR
Sbjct: 1   MSSFTALHSLHGSLLRSQFLGQDSLTHLNPRSKIHIKPSH--KFVQPCAKFNLVQIMGGR 58

Query: 60  GLCNGEKGIELELKRNVTEQES----QVADKEEESSASTAMPSTLSVPEDAFEKEMMGLT 115
           GLCNGE+G+E ELKR V   E       +DKE+E S      ST  V ED FEKE+MGLT
Sbjct: 59  GLCNGEEGLEQELKRQVGADEKPLPPAASDKEQEDSGG----STTQVAEDGFEKELMGLT 114

Query: 116 GGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPN 175
           GGFPGGEKGL++FIE+NPPPK    + S   + LT++ KPK PE P+L+PGM AIVKNPN
Sbjct: 115 GGFPGGEKGLRKFIEENPPPKPGAGSKS---LNLTSSVKPKAPELPMLLPGMIAIVKNPN 171

Query: 176 NPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIK 235
           NPFYMYCGIVQRITDGKA +LFEGGNWD+LITFRLDELERREKGPP +NPKS VLE +++
Sbjct: 172 NPFYMYCGIVQRITDGKARILFEGGNWDKLITFRLDELERREKGPPMKNPKSCVLEPLLE 231

Query: 236 KQ 237
           K+
Sbjct: 232 KK 233

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075232|gb|ACJ85976.1| unknown [Medicago truncatula]

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 179/246 (72%), Gaps = 12/246 (4%)

Query: 1   MASSINLHTLQGPLLQSHFLGQNQVSY---RPKKPYLATPKQPSTVLKPCAKFDLFEIMG 57
           M+S + LH+L G LL+S FLGQ  +++      K  +   K     ++ CAKFDL +IMG
Sbjct: 1   MSSFVALHSLHGSLLRSKFLGQENLTHLYPHSNKASIFHSKPTFKTVQTCAKFDLLQIMG 60

Query: 58  GRGLCNGEKGIELELKRNVTEQE------SQVADKEEESSASTAMPSTLSVPEDAFEKEM 111
           GRGLC GE+G++ ELKR V   +      S+ +DKE+E S S +  S  SV ED F+KE+
Sbjct: 61  GRGLCKGEEGLQKELKREVGLDDRNQPTSSEASDKEQEDSTSNSTKSFESVAEDGFDKEL 120

Query: 112 MGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIV 171
           MGLTGGFPGGEKGL++FIE+NP PK   T      + L+++ KPKPPE P+L+PGM AIV
Sbjct: 121 MGLTGGFPGGEKGLKKFIEENPLPK---TVKGNKSLKLSSSEKPKPPELPMLLPGMIAIV 177

Query: 172 KNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLE 231
           KN NNPFYMYCGIVQRITDGKAGVLFEGGNWD+LITFRL+ELERREKGPP +NPKS VLE
Sbjct: 178 KNQNNPFYMYCGIVQRITDGKAGVLFEGGNWDKLITFRLEELERREKGPPMKNPKSCVLE 237

Query: 232 GMIKKQ 237
             + K+
Sbjct: 238 PFLVKK 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514669|ref|XP_003627623.1| hypothetical protein MTR_8g032260 [Medicago truncatula] gi|355521645|gb|AET02099.1| hypothetical protein MTR_8g032260 [Medicago truncatula] gi|388513929|gb|AFK45026.1| unknown [Medicago truncatula]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 179/246 (72%), Gaps = 12/246 (4%)

Query: 1   MASSINLHTLQGPLLQSHFLGQNQVSY---RPKKPYLATPKQPSTVLKPCAKFDLFEIMG 57
           M+S + LH+L G LL+S FLGQ  +++      K  +   K     ++ CAKFDL +IMG
Sbjct: 1   MSSFVALHSLHGSLLRSKFLGQENLTHLYPHSNKASIFHSKPTFKTVQTCAKFDLLQIMG 60

Query: 58  GRGLCNGEKGIELELKRNVTEQE------SQVADKEEESSASTAMPSTLSVPEDAFEKEM 111
           GRGLC GE+G++ ELKR V   +      S+ +DKE+E S S +  S  SV ED F+KE+
Sbjct: 61  GRGLCKGEEGLQKELKREVGLDDQNQPTSSEASDKEQEDSTSNSTKSFESVAEDGFDKEL 120

Query: 112 MGLTGGFPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIV 171
           MGLTGGFPGGEKGL++FIE+NP PK   T      + L+++ KPKPPE P+L+PGM AIV
Sbjct: 121 MGLTGGFPGGEKGLKKFIEENPLPK---TVKGNKSLKLSSSEKPKPPELPMLLPGMIAIV 177

Query: 172 KNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLE 231
           KN NNPFYMYCGIVQRITDGKAGVLFEGGNWD+LITFRL+ELERREKGPP +NPKS VLE
Sbjct: 178 KNQNNPFYMYCGIVQRITDGKAGVLFEGGNWDKLITFRLEELERREKGPPMKNPKSCVLE 237

Query: 232 GMIKKQ 237
             + K+
Sbjct: 238 PFLVKK 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075114|ref|XP_002304561.1| predicted protein [Populus trichocarpa] gi|222841993|gb|EEE79540.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/237 (65%), Positives = 180/237 (75%), Gaps = 13/237 (5%)

Query: 1   MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGRG 60
           MASSI   TLQ  LL+S+FLGQN     P KPY   PK     LK CAK DLFEI+GGRG
Sbjct: 1   MASSI---TLQSTLLRSNFLGQNNCFNHPHKPYSLIPKDHRLKLKTCAKLDLFEILGGRG 57

Query: 61  LCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFPG 120
           LCNGEKG++ ELKRN+ EQ S  A +EE S +        SVP+DAFEKE+MGLTGGFPG
Sbjct: 58  LCNGEKGVQQELKRNIEEQASSTAGREENSGSLEKS----SVPDDAFEKELMGLTGGFPG 113

Query: 121 GEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYM 180
           GEKGL++FIE+NP PKK        V  LT T +PKPPE PLL+PGM AIVKNPNNPFYM
Sbjct: 114 GEKGLKRFIEENPSPKKQ------SVPKLTITSRPKPPELPLLLPGMIAIVKNPNNPFYM 167

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQ 237
           Y GIVQRITDGKAGV+FEGGNWD+L+TFRL+ELERREKGPPG+NP+SA++E   + +
Sbjct: 168 YTGIVQRITDGKAGVIFEGGNWDKLVTFRLEELERREKGPPGKNPRSAIIEAFYEAE 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767601|emb|CAN73381.1| hypothetical protein VITISV_003162 [Vitis vinifera]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/238 (62%), Positives = 181/238 (76%), Gaps = 9/238 (3%)

Query: 1   MASSINLHTLQGPL-LQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGR 59
           MA S  + +LQ PL  +SHFLGQ       +K  L+  + P  V K  AKFDLF IMGGR
Sbjct: 1   MAXSFTVPSLQRPLPHKSHFLGQGHFPNNIQKASLSRTRTPLPV-KASAKFDLFGIMGGR 59

Query: 60  GLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFP 119
           GLCNGE+G++ ELKRN+    S  + K+EE  A  A+     VPED F+KE++GLTGGFP
Sbjct: 60  GLCNGEEGLQQELKRNIEPAPSPDSVKDEEKPALAAVDD---VPEDGFDKELLGLTGGFP 116

Query: 120 GGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFY 179
           GGEKGL+QF+E+NPPP+K     SG+++     RKPKPPE PLLMPGM AIVKNPNNPFY
Sbjct: 117 GGEKGLKQFLEKNPPPEK----TSGNIIENARLRKPKPPELPLLMPGMIAIVKNPNNPFY 172

Query: 180 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQ 237
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+EL+RR+KGPP +NPKSA+LE +++++
Sbjct: 173 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELQRRDKGPPMKNPKSAILETLLEQE 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053775|ref|XP_002297973.1| predicted protein [Populus trichocarpa] gi|222845231|gb|EEE82778.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 156/231 (67%), Positives = 180/231 (77%), Gaps = 13/231 (5%)

Query: 1   MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTVLKPCAKFDLFEIMGGRG 60
           MASSI   TLQ  LL+S FLGQN     P KPY   PK+    +K CAKFD FEI+GGRG
Sbjct: 1   MASSI---TLQSTLLRSSFLGQNNFPNHPHKPYSLIPKEHRLKIKTCAKFDPFEILGGRG 57

Query: 61  LCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFPG 120
           LCNGEKG++ EL+RN+ E+E+  A  EEE S +  + S   VPED FEKE+MGLTGGFPG
Sbjct: 58  LCNGEKGVQQELQRNI-EEEAPPAAGEEEYSGNLEISS---VPEDGFEKELMGLTGGFPG 113

Query: 121 GEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNPFYM 180
           GEKGL++FIE+NPPPKK   A       LT T KPKPPE PLL+PGM AIVKNPNNPFYM
Sbjct: 114 GEKGLEKFIEENPPPKKQPAAK------LTITNKPKPPELPLLLPGMIAIVKNPNNPFYM 167

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLE 231
           Y GIVQRITDGKAGV+FEGGNWDRL+TFRL+ELERREKGPPG+NP+SA++E
Sbjct: 168 YTGIVQRITDGKAGVIFEGGNWDRLVTFRLEELERREKGPPGKNPRSAIIE 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799602|ref|XP_002867685.1| hypothetical protein ARALYDRAFT_914207 [Arabidopsis lyrata subsp. lyrata] gi|297313521|gb|EFH43944.1| hypothetical protein ARALYDRAFT_914207 [Arabidopsis lyrata subsp. lyrata]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/242 (60%), Positives = 176/242 (72%), Gaps = 5/242 (2%)

Query: 2   ASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTV--LKPCAKFDLFEIMGGR 59
            SSI + T++ P+ +S FLGQ        +     PKQ S V  +K   KF+L+E+MGGR
Sbjct: 3   TSSITIPTMRTPIHRSKFLGQTHQFSTANQSIFPPPKQQSKVYQVKAMGKFNLWEVMGGR 62

Query: 60  GLCNGEKGIELELKRNVTE-QESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGF 118
           GLCNGEKGIE ELKRN+ + QE+  A+  E    S     +  VPED F+KEMMGLTGGF
Sbjct: 63  GLCNGEKGIEKELKRNIEDGQETSKAENNETEKESDDSNLSFKVPEDGFDKEMMGLTGGF 122

Query: 119 PGGEKGLQQFIEQNPPPKKPVT-ADSG-DVVALTTTRKPKPPEWPLLMPGMFAIVKNPNN 176
           PGGEKGLQ FIE+NPPP      A  G D  A+ T +KPK PE PLLMPGM AIVKN N+
Sbjct: 123 PGGEKGLQTFIEKNPPPPPTPPPAKRGTDASAVVTDKKPKAPELPLLMPGMIAIVKNQNS 182

Query: 177 PFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKK 236
           P++MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPG+NPKS +LE +I++
Sbjct: 183 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIEQ 242

Query: 237 QE 238
            +
Sbjct: 243 MQ 244

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236659|ref|NP_194120.1| uncharacterized protein [Arabidopsis thaliana] gi|4972093|emb|CAB43889.1| putative protein [Arabidopsis thaliana] gi|7269238|emb|CAB81307.1| putative protein [Arabidopsis thaliana] gi|21592640|gb|AAM64589.1| unknown [Arabidopsis thaliana] gi|22135940|gb|AAM91552.1| putative protein [Arabidopsis thaliana] gi|23197588|gb|AAN15321.1| putative protein [Arabidopsis thaliana] gi|332659420|gb|AEE84820.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/242 (59%), Positives = 175/242 (72%), Gaps = 5/242 (2%)

Query: 2   ASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTV--LKPCAKFDLFEIMGGR 59
            SSI + T++ P+ +S FLGQ        +     PKQ S +  +K   KF+L+E+MGGR
Sbjct: 3   TSSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGR 62

Query: 60  GLCNGEKGIELELKRNV-TEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGF 118
           GLCNGEKGIE EL+RN+  EQE+  A+  E    S     +  VPED FEKEMMGLTGGF
Sbjct: 63  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 122

Query: 119 PGGEKGLQQFIEQNPPPKKPV--TADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNN 176
           PGGEKGL+ FIE+NPPP  P        D  A+ T +KPK P+ PLLMPGM AIVKN N+
Sbjct: 123 PGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNS 182

Query: 177 PFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKK 236
           P++MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPG+NPKS +LE +I++
Sbjct: 183 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIEQ 242

Query: 237 QE 238
            +
Sbjct: 243 MQ 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462539|ref|XP_004148998.1| PREDICTED: uncharacterized protein LOC101210548 [Cucumis sativus] gi|449506166|ref|XP_004162671.1| PREDICTED: uncharacterized LOC101210548 [Cucumis sativus]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/239 (61%), Positives = 185/239 (77%), Gaps = 5/239 (2%)

Query: 1   MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPST---VLKPCAKFDLFEIMG 57
           MASSI+L + Q PLL+S FL QN+      +P+    +  S+     +P A FDL +++G
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 58  GRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGG 117
           GRGLCNGE+G++ ELKRNV +    +AD  E    S  +P   SVPED FEKE+MGLTGG
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPV-LADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 120

Query: 118 FPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 177
           FPGGEKGL++FI +NPPP+KP  + SG++ ++  T+KPKPP+ PLL+PGM AIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 178 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKK 236
           +YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP +NPKSAVLE +++K
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQK 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2138091	250	NdhS "AT4G23890" [Arabidopsis	0.991	0.944	0.605	7.5e-73

TAIR|locus:2138091 NdhS "AT4G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 146/241 (60%), Positives = 177/241 (73%)

Query:     3 SSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTV--LKPCAKFDLFEIMGGRG 60
             SSI + T++ P+ +S FLGQ        +     PKQ S +  +K   KF+L+E+MGGRG
Sbjct:     4 SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQVKAMGKFNLWEVMGGRG 63

Query:    61 LCNGEKGIELELKRNVT-EQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGGFP 119
             LCNGEKGIE EL+RN+  EQE+  A+  E    S     +  VPED FEKEMMGLTGGFP
Sbjct:    64 LCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGFP 123

Query:   120 GGEKGLQQFIEQNPPPKKPVT-ADSG-DVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 177
             GGEKGL+ FIE+NPPP  P   A  G D  A+ T +KPK P+ PLLMPGM AIVKN N+P
Sbjct:   124 GGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNSP 183

Query:   178 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKKQ 237
             ++MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPG+NPKS +LE +I++ 
Sbjct:   184 YHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIEQM 243

Query:   238 E 238
             +
Sbjct:   244 Q 244


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      238       238   0.00091  113 3  11 23  0.50    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.04u 0.08s 28.12t   Elapsed:  00:00:02
  Total cpu time:  28.04u 0.08s 28.12t   Elapsed:  00:00:02
  Start:  Fri May 10 16:43:19 2013   End:  Fri May 10 16:43:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00031125	hypothetical protein (229 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•					0.511
	gw1.XII.287.1	hypothetical protein (117 aa)			•						0.501
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•					0.500
	gw1.II.3234.1	annotation not avaliable (153 aa)			•						0.499
	cemA	RecName- Full=Chloroplast envelope membrane protein;; May be involved in proton extrusion. Indi [...] (221 aa)			•						0.497
	gw1.152.106.1	hypothetical protein (199 aa)			•	•					0.493
	eugene3.14640002	annotation not avaliable (58 aa)			•						0.491
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•					0.491
	estExt_fgenesh4_pg.C_LG_X1887	hypothetical protein (235 aa)			•	•					0.488
	eugene3.00100819	SubName- Full=Putative uncharacterized protein; (202 aa)			•	•					0.487

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam11623	53	pfam11623, DUF3252, Protein of unknown function (D	3e-30

>gnl|CDD|152059 pfam11623, DUF3252, Protein of unknown function (DUF3252)

 Score =  106 bits (267), Expect = 3e-30
 Identities = 36/53 (67%), Positives = 44/53 (83%)

Query: 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELE 214
           L++PGM   VKNPN+ +Y Y G VQR++DGKA VLFEGGNWD+L+TFRL ELE
Sbjct: 1   LILPGMTVKVKNPNDIYYGYEGQVQRVSDGKAAVLFEGGNWDKLVTFRLSELE 53

This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
PF11623	53	DUF3252: Protein of unknown function (DUF3252); In	100.0
TIGR00405	145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	92.85
TIGR00922	172	nusG transcription termination/antitermination fac	91.79
PRK05609	181	nusG transcription antitermination protein NusG; V	91.06
PF12073	52	DUF3553: Protein of unknown function (DUF3553); In	89.99
smart00561	96	MBT Present in Drosophila Scm, l(3)mbt, and verteb	88.83
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	86.2
TIGR01955	159	RfaH transcriptional activator RfaH. This model re	85.86
PRK08559	153	nusG transcription antitermination protein NusG; V	85.1
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	84.46
PLN00045	101	photosystem I reaction center subunit IV; Provisio	83.74

>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function

Probab=100.00  E-value=2.9e-38  Score=226.06  Aligned_cols=53  Identities=64%  Similarity=1.170  Sum_probs=45.6

Q ss_pred             cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchh
Q 044915          162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELE  214 (238)
Q Consensus       162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe  214 (238)
                      ||||||+|+|+||+|+||+|+|+||||||||||||||||||||||||+|+|||
T Consensus         1 ~ilPG~~V~V~n~~~~Y~~y~G~VQRvsdgkaaVLFEGGnWdKlvTf~l~eLe   53 (53)
T PF11623_consen    1 MILPGSTVRVKNPNDIYYGYEGFVQRVSDGKAAVLFEGGNWDKLVTFRLSELE   53 (53)
T ss_dssp             ---TT-EEEE--TTSTTTT-EEEEEEEETTEEEEEEEETTEEEEEEEEGGGEE
T ss_pred             CccCCCEEEEeCCCCccchheEEEEEeeCCeEEEEecCCCceEEEEEEhhhCC
Confidence            79999999999999999999999999999999999999999999999999997

Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal

Probab=92.85  E-value=0.18  Score=40.46  Aligned_cols=56  Identities=20%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCccee--EEeeccchhhccc
Q 044915          161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRL--ITFRLDELERREK  218 (238)
Q Consensus       161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKl--vtf~l~eLe~~~~  218 (238)
                      .++.+|..|+|++  -+|-+|+|.|.++...|.-|+++-=+-...  ||+..++|+.+++
T Consensus        85 ~~~~~Gd~V~I~~--GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~~v~v~~~~l~~~~~  142 (145)
T TIGR00405        85 ESIKKGDIVEIIS--GPFKGERAKVIRVDESKEEVTLELIEAAVPIPVTVKGDQVRIIQK  142 (145)
T ss_pred             cccCCCCEEEEee--cCCCCCeEEEEEEcCCCCEEEEEEEEcCccceEEEeeeEEEEecc
Confidence            4588999999998  699999999999987777888887778888  9999999988764

This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.

>TIGR00922 nusG transcription termination/antitermination factor NusG

Probab=91.79  E-value=0.48  Score=38.60  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=44.5

Q ss_pred             CcccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCcceeEEeeccchh
Q 044915          161 PLLMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNWDRLITFRLDELE  214 (238)
Q Consensus       161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnWdKlvtf~l~eLe  214 (238)
                      ..+.+|+.|+|++  -++-+|+|.|.++.  +++|.|+++-=+=...|++.+++|+
T Consensus       118 ~~~~~G~~V~I~~--Gpf~G~~g~v~~~~~~~~r~~V~v~~~g~~~~v~v~~~~l~  171 (172)
T TIGR00922       118 IDFEVGEQVRVND--GPFANFTGTVEEVDYEKSKLKVSVSIFGRETPVELEFSQVE  171 (172)
T ss_pred             cCCCCCCEEEEee--cCCCCcEEEEEEEcCCCCEEEEEEEECCCceEEEEcHHHee
Confidence            4477999999994  68999999999996  5699999998777788999888875

Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).

>PRK05609 nusG transcription antitermination protein NusG; Validated

Probab=91.06  E-value=0.61  Score=38.09  Aligned_cols=54  Identities=19%  Similarity=0.258  Sum_probs=45.4

Q ss_pred             CcccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCcceeEEeeccchhhc
Q 044915          161 PLLMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNWDRLITFRLDELERR  216 (238)
Q Consensus       161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnWdKlvtf~l~eLe~~  216 (238)
                      ..+.+|..|+|+  +-++-+|+|.|.++.  .++|.|+++-=+=...|.+.+++|+..
T Consensus       125 ~~~~~Gd~VrI~--~GPf~G~~g~v~~i~~~~~r~~v~l~~~G~~~~v~l~~~~l~~~  180 (181)
T PRK05609        125 VDFEVGEMVRVI--DGPFADFNGTVEEVDYEKSKLKVLVSIFGRETPVELEFSQVEKI  180 (181)
T ss_pred             cCCCCCCEEEEe--ccCCCCCEEEEEEEeCCCCEEEEEEEECCCceEEEEchHHEEEc
Confidence            457899999999  468999999999995  458999999877678888888888653

>PF12073 DUF3553: Protein of unknown function (DUF3553); InterPro: IPR021938 This family of proteins is functionally uncharacterised

Probab=89.99  E-value=0.59  Score=34.14  Aligned_cols=34  Identities=41%  Similarity=0.673  Sum_probs=29.3

Q ss_pred             ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915          163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG  199 (238)
Q Consensus       163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG  199 (238)
                      |-|||.  |.+|+.+=.+ .|+||-..+||+-|-||.
T Consensus         1 l~pG~~--VrHP~~pdWG-~GqVqS~i~~rvTVnF~~   34 (52)
T PF12073_consen    1 LEPGML--VRHPDHPDWG-IGQVQSNIGGRVTVNFEH   34 (52)
T ss_pred             CCCCCE--EeCCCCCCCc-ceEEEEecCCeEEEeecc
Confidence            358886  4688888888 599999999999999998

This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.

>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

Probab=88.83  E-value=1.4  Score=34.27  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=40.4

Q ss_pred             CCCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915          155 PKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG  199 (238)
Q Consensus       155 p~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG  199 (238)
                      +..+....+-+||-+-+.|+.|++.-....|.+|.++++-|-|+|
T Consensus        20 ~~~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~~l~v~~dg   64 (96)
T smart00561       20 PVDSPPNGFKVGMKLEAVDPRNPSLICVATVVEVKGYRLLLHFDG   64 (96)
T ss_pred             CCCCccCcccCCCEEEEECCCCCceEEEEEEEEEECCEEEEEEcc
Confidence            444556668999999999999999999999999999999999997

Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.

>smart00333 TUDOR Tudor domain

Probab=86.20  E-value=2.9  Score=27.95  Aligned_cols=47  Identities=15%  Similarity=0.207  Sum_probs=36.9

Q ss_pred             cccCCceEEEeCCCCcccceeceEEEeeC-CeeEEEeeC-CCcceeEEeeccch
Q 044915          162 LLMPGMFAIVKNPNNPFYMYCGIVQRITD-GKAGVLFEG-GNWDRLITFRLDEL  213 (238)
Q Consensus       162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtd-gkaaVLFeG-gnWdKlvtf~l~eL  213 (238)
                      .+-+|..|.+...++.|  |.+.|+.|.+ +.+-|.|.+ ||-.   ++..++|
T Consensus         2 ~~~~G~~~~a~~~d~~w--yra~I~~~~~~~~~~V~f~D~G~~~---~v~~~~l   50 (57)
T smart00333        2 TFKVGDKVAARWEDGEW--YRARIIKVDGEQLYEVFFIDYGNEE---VVPPSDL   50 (57)
T ss_pred             CCCCCCEEEEEeCCCCE--EEEEEEEECCCCEEEEEEECCCccE---EEeHHHe
Confidence            35689999999844555  5789999999 999999999 8875   4455555

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>TIGR01955 RfaH transcriptional activator RfaH

Probab=85.86  E-value=2.2  Score=34.13  Aligned_cols=51  Identities=12%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             cccCCceEEEeCCCCcccceeceEEEee-CCeeEEEeeCCCcceeEEeeccchh
Q 044915          162 LLMPGMFAIVKNPNNPFYMYCGIVQRIT-DGKAGVLFEGGNWDRLITFRLDELE  214 (238)
Q Consensus       162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvt-dgkaaVLFeGgnWdKlvtf~l~eLe  214 (238)
                      .+.+|..|+|++  -++-+|+|.|.++. ..+|.|+++-=+=.-.|++..++||
T Consensus       108 ~~~~G~~V~V~~--GPf~g~~g~v~~~~~~~r~~v~l~~~gr~~~v~~~~~~~~  159 (159)
T TIGR01955       108 LPYKGDKVRITD--GAFAGFEAIFLEPDGEKRSMLLLNMIGKQIKVSVPNTSVE  159 (159)
T ss_pred             CCCCCCEEEEec--cCCCCcEEEEEEECCCceEEEEEhhhCCceEEEecHHHcC
Confidence            478999999997  47999999999996 4468888876555566777766664

This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.

>PRK08559 nusG transcription antitermination protein NusG; Validated

Probab=85.10  E-value=2  Score=35.40  Aligned_cols=54  Identities=22%  Similarity=0.151  Sum_probs=43.9

Q ss_pred             ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCccee--EEeeccchhhccc
Q 044915          163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRL--ITFRLDELERREK  218 (238)
Q Consensus       163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKl--vtf~l~eLe~~~~  218 (238)
                      +.+|..|+|++  -+|-+|.|+|+.+...+--|+++-=+=.-.  ||+.+++|..+++
T Consensus        95 ~~~G~~V~I~~--Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~~~~~~  150 (153)
T PRK08559         95 IKEGDIVELIA--GPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQVRVVKK  150 (153)
T ss_pred             CCCCCEEEEec--cCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEEEEecc
Confidence            88999999998  589999999999975555577766555556  9999999977764

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=84.46  E-value=2.8  Score=30.94  Aligned_cols=44  Identities=25%  Similarity=0.486  Sum_probs=32.9

Q ss_pred             CCceEEEeCCCCcccceeceEEE--eeCCeeEEEeeCCCcceeEEeeccc
Q 044915          165 PGMFAIVKNPNNPFYMYCGIVQR--ITDGKAGVLFEGGNWDRLITFRLDE  212 (238)
Q Consensus       165 PG~~v~V~n~~~~y~~y~G~VQR--vtdgkaaVLFeGgnWdKlvtf~l~e  212 (238)
                      -|..|.|.=|.|.-| |+|.|++  +++.+..|+|+.|.=   ++++.+|
T Consensus         8 ~Ge~V~~rWP~s~lY-Ye~kV~~~d~~~~~y~V~Y~DGte---l~lke~d   53 (55)
T PF09465_consen    8 IGEVVMVRWPGSSLY-YEGKVLSYDSKSDRYTVLYEDGTE---LELKEND   53 (55)
T ss_dssp             SS-EEEEE-TTTS-E-EEEEEEEEETTTTEEEEEETTS-E---EEEECCC
T ss_pred             CCCEEEEECCCCCcE-EEEEEEEecccCceEEEEEcCCCE---EEecccc
Confidence            488999999998766 7999999  889999999999963   4444444

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>PLN00045 photosystem I reaction center subunit IV; Provisional

Probab=83.74  E-value=4.2  Score=33.28  Aligned_cols=57  Identities=23%  Similarity=0.229  Sum_probs=46.7

Q ss_pred             CCcccCCceEEEeCCCCcccceeceEEEeeCC-----eeEEEeeCCCcceeEE--eeccchhhc
Q 044915          160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDG-----KAGVLFEGGNWDRLIT--FRLDELERR  216 (238)
Q Consensus       160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg-----kaaVLFeGgnWdKlvt--f~l~eLe~~  216 (238)
                      +-+|--|+.|+|.-+.+-+|-=.|.|--|...     -+-|.|+-=|+.-+-|  |-++||+.+
T Consensus        37 ~ig~~RGskVrIlR~ESYWyn~vGtVvsVDq~~girYPVvVRF~kvNY~gvnTNnfa~~El~~v  100 (101)
T PLN00045         37 PIGPKRGSKVKILRPESYWFNDVGKVVAVDQDPGVRYPVVVRFEKVNYAGVSTNNYALDEIEEV  100 (101)
T ss_pred             CcccCCCCEEEEccccceeecCcceEEEEeCCCCcccceEEEeeeeeccccccccccHhhhhcc
Confidence            44677899999999999999999999988766     2678899888876666  677888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
2jz2_A	66	Solution Nmr Structure Of Ssl0352 Protein From Syne		5e-13

>pdb|2JZ2|A Chain A, Solution Nmr Structure Of Ssl0352 Protein From Synechocystis Sp. Pcc 6803. Northeast Structural Genomics Consortium Target Sgr42 Length = 66

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELE 214
           ++ PG    V N ++ +Y + G+VQR++DGKA VLFE GNWD+L+TFRL ELE
Sbjct: 1   MIFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELE 53

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
2jz2_A	66	SSL0352 protein; SH3-like, synechocystis SP. PCC 6	4e-28

>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A Length = 66

 Score =  100 bits (251), Expect = 4e-28
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKG 219
           ++ PG    V N ++ +Y + G+VQR++DGKA VLFE GNWD+L+TFRL ELE  +  
Sbjct: 1   MIFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPI 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2jz2_A	66	SSL0352 protein; SH3-like, synechocystis SP. PCC 6	100.0
1qp2_A	70	Protein (PSAE protein); mainly beta, roll, pleckst	99.73
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	95.21
3sd4_A	69	PHD finger protein 20; tudor domain, transcription	95.2
3p8b_B	152	Transcription antitermination protein NUSG; transc	91.74
2e70_A	71	Transcription elongation factor SPT5; KOW motif, s	91.57
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	91.38
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	91.17
1nz9_A	58	Transcription antitermination protein NUSG; transc	90.45
1wjq_A	107	KIAA1798 protein; MBT domain, structural genomics,	89.59
2ckk_A	127	KIN17; beta barrel, ribosomal protein, ribonucleop	87.94
2jvv_A	181	Transcription antitermination protein NUSG; transc	86.3
2biv_A	243	SCML2 protein, sex COMB on midleg-like protein 2;	83.39
1jb0_E	75	Photosystem 1 reaction centre subunit IV; membrane	80.66
2qqr_A	118	JMJC domain-containing histone demethylation prote	80.27

>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A

Probab=100.00  E-value=2.4e-39  Score=238.99  Aligned_cols=58  Identities=50%  Similarity=0.934  Sum_probs=56.8

Q ss_pred             cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcccC
Q 044915          162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKG  219 (238)
Q Consensus       162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~g  219 (238)
                      ||||||+|+|+||+|+||||+|+||||||||||||||||||||||||+|+|||+++++
T Consensus         1 ~ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~~   58 (66)
T 2jz2_A            1 MIFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPI   58 (66)
T ss_dssp             CCCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCCC
T ss_pred             CccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceecccc
Confidence            7999999999999999999999999999999999999999999999999999999876

>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A

Probab=99.73  E-value=1.9e-18  Score=129.09  Aligned_cols=61  Identities=25%  Similarity=0.366  Sum_probs=57.1

Q ss_pred             cccCCceEEEeCCCCcccceeceEEEeeCCe----eEEEeeCCCcceeEE--eeccchhhcccCCCCC
Q 044915          162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGK----AGVLFEGGNWDRLIT--FRLDELERREKGPPGR  223 (238)
Q Consensus       162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgk----aaVLFeGgnWdKlvt--f~l~eLe~~~~gPPm~  223 (238)
                      ||.||+.|+|.+|.|.||.++|.||+|.+++    |+|+||++||++++|  |.|+|||.++ .|+.+
T Consensus         1 Mi~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~-~~~~k   67 (70)
T 1qp2_A            1 MVQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVE-APKAK   67 (70)
T ss_dssp             CCCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECC-CCCSC
T ss_pred             CcCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEec-cCccc
Confidence            8999999999999999999999999999999    999999999999999  9999999986 34443

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.21  E-value=0.026  Score=39.35  Aligned_cols=52  Identities=15%  Similarity=0.218  Sum_probs=45.4

Q ss_pred             cccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhh
Q 044915          162 LLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELER  215 (238)
Q Consensus       162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~  215 (238)
                      .+.||.+|+|++-  +|-+|+|.|+.|...|+-|+..-.....-|++..++|+.
T Consensus         7 ~f~~GD~V~V~~G--pf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv~K   58 (59)
T 2e6z_A            7 GFQPGDNVEVCEG--ELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRK   58 (59)
T ss_dssp             SCCTTSEEEECSS--TTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTEEE
T ss_pred             cCCCCCEEEEeec--CCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHEEE
Confidence            3789999999864  799999999999999999999866667789999988864

>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A

Probab=95.20  E-value=0.048  Score=38.71  Aligned_cols=58  Identities=16%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CCCCCCCCcccCCceEEEeCCCCcccceeceEEEe--eCCeeEEEeeC--CCcceeEEeeccch
Q 044915          154 KPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRI--TDGKAGVLFEG--GNWDRLITFRLDEL  213 (238)
Q Consensus       154 kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRv--tdgkaaVLFeG--gnWdKlvtf~l~eL  213 (238)
                      .|..+....+-+||-+-+.++.++.  |...|..|  .++++-|-|+|  .+||-.+.+.-.+|
T Consensus         4 ~p~~~~~~~F~vGmkLEa~d~~~p~--~~AtV~~v~~~~~~~~VhfdGw~~~~D~W~~~dS~~i   65 (69)
T 3sd4_A            4 HPPNRRGISFEVGAQLEARDRLKNW--YPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYL   65 (69)
T ss_dssp             CCCCCTTCCCSTTCEEEEECTTSCE--EEEEEEEEETTTTEEEEEETTSCGGGCEEEETTCTTE
T ss_pred             CCCCCCCCCcCCCCEEEEEECCCCc--cccEEEEEeccCCEEEEEeCCCCCCCCEEEcCCCCCe
Confidence            3455566679999999999999997  89999998  79999999998  77887776554444

>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D

Probab=91.74  E-value=0.42  Score=37.59  Aligned_cols=56  Identities=23%  Similarity=0.157  Sum_probs=47.6

Q ss_pred             CcccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCCcceeEEeeccchhhccc
Q 044915          161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGNWDRLITFRLDELERREK  218 (238)
Q Consensus       161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgnWdKlvtf~l~eLe~~~~  218 (238)
                      ..+-+|+.|+|++  -+|-+|.|+|.+|..  ++|-|++.--.=.--|++..+.++.+++
T Consensus        90 ~~~~~Gd~VrI~~--Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~  147 (152)
T 3p8b_B           90 SGLEPGDLVEVIA--GPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISK  147 (152)
T ss_dssp             TTCCTTCEEEECS--STTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEEC
T ss_pred             ccCCCCCEEEEee--ecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecc
Confidence            4578999999998  689999999999974  5788888876666789999999988765

>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.57  E-value=0.35  Score=35.82  Aligned_cols=50  Identities=20%  Similarity=0.295  Sum_probs=43.9

Q ss_pred             ccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhc
Q 044915          163 LMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERR  216 (238)
Q Consensus       163 ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~  216 (238)
                      -|.|.+|+|.-  -+|-+|-|+|-.++|..|-|-++.-|  |.||+..+.|..+
T Consensus        18 ~liGktV~I~k--GpyKG~~GiVkd~t~~~~RVELhs~~--K~VtV~r~~l~~~   67 (71)
T 2e70_A           18 ELIGQTVRISQ--GPYKGYIGVVKDATESTARVELHSTC--QTISVDRQRLTTV   67 (71)
T ss_dssp             SSTTSEEEECS--STTTTCEEEEEEECSSCEEEEESSSC--CEEEECTTTEEEC
T ss_pred             ccCCCEEEEec--cCCCCeEEEEEECCCCeEEEEecCCc--eEEEEEhhhcccc
Confidence            46799999975  46999999999999999999999886  9999999888554

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=91.38  E-value=0.46  Score=38.21  Aligned_cols=57  Identities=25%  Similarity=0.536  Sum_probs=44.7

Q ss_pred             cCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEeeccchhhcccCCCCCCC
Q 044915          164 MPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNP  225 (238)
Q Consensus       164 lPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~l~eLe~~~~gPPm~NP  225 (238)
                      +-++.|-|..-+..||.  |+|+.|.++.+-|-|++ +|.---++.++++  |-..||..++
T Consensus         3 ~~~~~VEV~~~~G~~y~--a~V~~v~~d~~~V~f~n-~w~~~~~vp~~~v--RlpP~~~~~~   59 (128)
T 3h8z_A            3 FQGLPVEVRGSNGAFYK--GFVKDVHEDSVTIFFEN-NWQSERQIPFGDV--RLPPPADYNK   59 (128)
T ss_dssp             TTTCEEEEECTTSCEEE--EEEEEECSSEEEEEETT-CTTCCEEEEGGGE--ECCCCC----
T ss_pred             ccccEEEEecCCCCEEE--EEEEEEeCCcEEEEEcc-ccCcceEechhhE--EcCCCccccc
Confidence            56899999998888865  99999999999999986 7997778888888  4345555553

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=91.17  E-value=0.59  Score=35.03  Aligned_cols=64  Identities=19%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             CCCCCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC--CCcceeEEeeccchhhc
Q 044915          153 RKPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG--GNWDRLITFRLDELERR  216 (238)
Q Consensus       153 ~kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG--gnWdKlvtf~l~eLe~~  216 (238)
                      +.|.......+-+||-|-+.+..++.|.-.-.|-.+.+.++-|-|.|  ..||--|...-.+|-.+
T Consensus        10 ~~~~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~   75 (88)
T 2eqm_A           10 KKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL   75 (88)
T ss_dssp             TSCCSCSSCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECC
T ss_pred             cCCCCCCcCcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEecc
Confidence            45555556678999999999999998655555556668999999999  88999888776666443

>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4

Probab=90.45  E-value=0.71  Score=31.17  Aligned_cols=51  Identities=20%  Similarity=0.282  Sum_probs=41.5

Q ss_pred             ccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCCcceeEEeeccchhh
Q 044915          163 LMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGNWDRLITFRLDELER  215 (238)
Q Consensus       163 ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgnWdKlvtf~l~eLe~  215 (238)
                      +-+|..|+|++-  +|-+|+|.|++|..  +++-|+++-=.-...|.+..++++.
T Consensus         5 ~~~Gd~V~V~~G--pf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek   57 (58)
T 1nz9_A            5 FREGDQVRVVSG--PFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK   57 (58)
T ss_dssp             CCTTCEEEECSG--GGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred             cCCCCEEEEeec--CCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence            568999999864  89999999999975  4799999886666777777777653

>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3

Probab=89.59  E-value=0.72  Score=36.10  Aligned_cols=44  Identities=27%  Similarity=0.409  Sum_probs=39.9

Q ss_pred             CCCCCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915          154 KPKPPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG  199 (238)
Q Consensus       154 kp~~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG  199 (238)
                      |++++  ..+.+||-+-+.|++|+..-+.-.|.+|.+.++-|-|+|
T Consensus         7 ~~~p~--~~F~~GMKLEAvD~~~p~~icvATV~~v~g~rl~v~fDG   50 (107)
T 1wjq_A            7 GVKPP--HGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDG   50 (107)
T ss_dssp             CCCCS--SSCCSSCEEEEECTTCTTCEEEEEEEEECSSCEEEECSS
T ss_pred             ccCCc--ccCCCCCEEEEEcCCCCCcEEeEEEEEecCCEEEEEeCC
Confidence            55543  569999999999999999999999999999999999997

>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}

Probab=87.94  E-value=1.8  Score=34.26  Aligned_cols=55  Identities=16%  Similarity=0.206  Sum_probs=42.9

Q ss_pred             CCCcccCCceEEEeCCCCc--ccceeceEEEeeCCeeEEE-e-eCCCcceeEEeeccchhhc
Q 044915          159 EWPLLMPGMFAIVKNPNNP--FYMYCGIVQRITDGKAGVL-F-EGGNWDRLITFRLDELERR  216 (238)
Q Consensus       159 ~~~~ilPG~~v~V~n~~~~--y~~y~G~VQRvtdgkaaVL-F-eGgnWdKlvtf~l~eLe~~  216 (238)
                      ...-+.||-.|+|++-+.-  ||.=.|.|+.|.++..+.+ + +.|   ++|++.-++||-+
T Consensus        11 ~~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~g---~~v~v~q~~LETV   69 (127)
T 2ckk_A           11 TDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSG---DKLKLDQTHLETV   69 (127)
T ss_dssp             CSCCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTTC---CEEEEEGGGEEEC
T ss_pred             CCCcccCCeEEEEEEccCCCcccCceEEEEEecCCCeEEEEECCCC---CEEEEchHHcEEe
Confidence            4456899999999998644  9999999999975555544 4 444   6679999999876

>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G

Probab=86.30  E-value=1.6  Score=34.94  Aligned_cols=51  Identities=20%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             cccCCceEEEeCCCCcccceeceEEEeeC--CeeEEEeeCCCcceeEEeeccchh
Q 044915          162 LLMPGMFAIVKNPNNPFYMYCGIVQRITD--GKAGVLFEGGNWDRLITFRLDELE  214 (238)
Q Consensus       162 ~ilPG~~v~V~n~~~~y~~y~G~VQRvtd--gkaaVLFeGgnWdKlvtf~l~eLe  214 (238)
                      .+-+|..|+|++  -+|-+|+|.|++|.+  +|+-|+++-=+=..-|++..+++|
T Consensus       127 ~~~~Gd~V~V~~--GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qve  179 (181)
T 2jvv_A          127 LFEPGEMVRVND--GPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE  179 (181)
T ss_dssp             CCCTTEEEEECS--STTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEE
T ss_pred             cCCCCCEEEEec--cCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEE
Confidence            467999999996  689999999999974  478888887444455566655554

>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A

Probab=83.39  E-value=1.5  Score=38.05  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=38.9

Q ss_pred             CCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915          158 PEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG  199 (238)
Q Consensus       158 p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG  199 (238)
                      +....+-+||-+-+.||.|++--+.-.|.+|.++++-|-|+|
T Consensus        58 ~~~~~f~vGmKLEa~D~~~~~~~~vATV~~v~g~~l~l~~dG   99 (243)
T 2biv_A           58 PPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDG   99 (243)
T ss_dssp             CCCCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETT
T ss_pred             CCcccccCCCEEEEecCCCCCcEEEEEEEEEeCCEEEEEECC
Confidence            445779999999999999999999999999999999999998

>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*

Probab=80.66  E-value=3.6  Score=31.10  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=44.4

Q ss_pred             CCceEEEeCCCCcccceeceEEEeeCC-----eeEEEeeCCCc-------cee--EEeeccchhhcccCC
Q 044915          165 PGMFAIVKNPNNPFYMYCGIVQRITDG-----KAGVLFEGGNW-------DRL--ITFRLDELERREKGP  220 (238)
Q Consensus       165 PG~~v~V~n~~~~y~~y~G~VQRvtdg-----kaaVLFeGgnW-------dKl--vtf~l~eLe~~~~gP  220 (238)
                      -|+.|+|.-|.+-+|-=.|.|--|...     -+-|.|+-=|.       .-+  =-|-++||+.+++.+
T Consensus         3 RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVNY~g~sG~~~G~nTNnfa~~El~~v~~~~   72 (75)
T 1jb0_E            3 RGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEVAPPK   72 (75)
T ss_dssp             TTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCCSCSSTTCCCCCCEEEECGGGEEECC---
T ss_pred             CCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeecccccccccccccccccCHhHhhccccCC
Confidence            489999999999999999999999775     25889998888       333  348899999887443

>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*

Probab=80.27  E-value=2.1  Score=34.21  Aligned_cols=43  Identities=28%  Similarity=0.356  Sum_probs=36.5

Q ss_pred             CCcccCCceEEEeCCCCcccceeceEEEeeCC-eeEEEeeCCCcce
Q 044915          160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDG-KAGVLFEGGNWDR  204 (238)
Q Consensus       160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdg-kaaVLFeGgnWdK  204 (238)
                      ++.|-.|..|+.+|.|.-||  .|.|-+++.- -.-|-|..|+|..
T Consensus         3 ~~~v~vGq~V~akh~ngryy--~~~V~~~~~~~~y~V~F~DgS~s~   46 (118)
T 2qqr_A            3 MQSITAGQKVISKHKNGRFY--QCEVVRLTTETFYEVNFDDGSFSD   46 (118)
T ss_dssp             SSCCCTTCEEEEECTTSSEE--EEEEEEEEEEEEEEEEETTSCEEE
T ss_pred             cceeccCCEEEEECCCCCEE--eEEEEEEeeEEEEEEEcCCCCccC
Confidence            45578899999999999998  8999888654 3568899999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1nppa2	58	N-utilization substance G protein NusG, C-terminal	93.66
d1oi1a2	104	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	93.4
d1oz2a1	110	Lethal(3)malignant brain tumor-like protein {Human	92.72
d1oi1a1	103	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	92.36
d1oz2a2	108	Lethal(3)malignant brain tumor-like protein {Human	92.28
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	91.57
d1oz2a3	106	Lethal(3)malignant brain tumor-like protein {Human	90.68
d1wjsa_	127	Lethal(3)malignant brain tumor-like 3 protein, L3M	88.33
d1wjqa_	107	Lethal(3)malignant brain tumor-like 3 protein, L3M	87.43

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.66  E-value=0.061  Score=35.93  Aligned_cols=51  Identities=20%  Similarity=0.279  Sum_probs=39.4

Q ss_pred             ccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCcceeEEeeccchhh
Q 044915          163 LMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNWDRLITFRLDELER  215 (238)
Q Consensus       163 ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnWdKlvtf~l~eLe~  215 (238)
                      +-+|..|+|++-  +|-+|+|.|++|.  .+||-|+++==.=.--|++.+++||.
T Consensus         5 f~~Gd~V~I~~G--pF~g~~g~V~~i~~~~~rv~V~v~~fGr~t~vel~~~~vek   57 (58)
T d1nppa2           5 FEKGDQVRVIEG--PFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEK   57 (58)
T ss_dssp             CCTTCEEEECSS--TTTTCEEEEEEEEGGGTEEEEEEEETTEEEEEEEEGGGEEE
T ss_pred             ccCCCEEEEccc--CCCCCEEEEEEEcCCCCEEEEEEeecCCCceEeeCHHHEEe
Confidence            568999999975  8999999999995  47999999863333456677777654

>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.11  Score=38.03  Aligned_cols=47  Identities=17%  Similarity=0.397  Sum_probs=40.7

Q ss_pred             CCCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCccee
Q 044915          157 PPEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRL  205 (238)
Q Consensus       157 ~p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKl  205 (238)
                      .+..-.+.+||-+-|+||.|++.-+.-.|.+|.+++.-|.|+|  ||.-
T Consensus        27 ~~~~~~F~~GmkLEavD~~~~~~i~vAtV~~v~g~~l~v~~dg--~~~~   73 (104)
T d1oi1a2          27 KPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDG--WSGA   73 (104)
T ss_dssp             CCSSCCCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETT--SCST
T ss_pred             CcccCCCCCCCEEEEECCCCCCeEEEEEEEEEECCEEEEEeCC--CCCc
Confidence            3444569999999999999999999999999999999999998  5543

>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.048  Score=40.17  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=37.7

Q ss_pred             CCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915          160 WPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG  199 (238)
Q Consensus       160 ~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG  199 (238)
                      .-.+.+||.+-|+||.++..-....|.+|.++++-|.|+|
T Consensus        32 ~~~f~~GmklEavd~~~~~~i~vAtV~~v~g~~l~v~~dg   71 (110)
T d1oz2a1          32 KNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDG   71 (110)
T ss_dssp             CCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETT
T ss_pred             CCcccCCCEEEEEcCCCCCeEEEEEEEEEECCEEEEEECC
Confidence            3569999999999999999999999999999999999999

>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.075  Score=38.82  Aligned_cols=50  Identities=22%  Similarity=0.242  Sum_probs=42.8

Q ss_pred             CCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEee
Q 044915          158 PEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFR  209 (238)
Q Consensus       158 p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf~  209 (238)
                      +....+.+||.+-|.||.++..-.--.|.+|.++++-|-|+|  ||.--.|-
T Consensus        26 ~~~~~f~~GmklEavd~~~~~~~~vAtV~~v~g~~~~l~~dG--~~~~~dfw   75 (103)
T d1oi1a1          26 PPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDG--SDNRNDFW   75 (103)
T ss_dssp             CCCCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETT--SCTTCCEE
T ss_pred             CCCcCcccCCEEEeEcCCCCCeEEEEEEEEeeCCEEEEEECC--CCCcCCEE
Confidence            345569999999999999999989999999999999999998  77654443

>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.18  Score=37.05  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=41.4

Q ss_pred             CCCCcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEe
Q 044915          158 PEWPLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITF  208 (238)
Q Consensus       158 p~~~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf  208 (238)
                      +....+.+||.+-|.||.++..-....|.+|.++++-|-|+|  ||.-..|
T Consensus        27 ~~~~~F~~GmkLEavd~~~~~~i~vAtV~~v~g~~~~l~~dg--~~~~~d~   75 (108)
T d1oz2a2          27 PPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDN--WDDTYDY   75 (108)
T ss_dssp             CCCTTCCTTCEEEEECTTSTTCEEEEEEEEEETTEEEEEETT--SCGGGCE
T ss_pred             ccCCCCCCCCEEEEEcCCCCeEEEEEEEEEEECCEEEEEECC--CCCccCE
Confidence            334569999999999999999888899999999999999998  6654333

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.57  E-value=0.17  Score=33.67  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             ccCCceEEEeCCCCcccceeceEEEee--CCeeEEEeeCCCcceeEEeeccchh
Q 044915          163 LMPGMFAIVKNPNNPFYMYCGIVQRIT--DGKAGVLFEGGNWDRLITFRLDELE  214 (238)
Q Consensus       163 ilPG~~v~V~n~~~~y~~y~G~VQRvt--dgkaaVLFeGgnWdKlvtf~l~eLe  214 (238)
                      +-+|..|+|++  =+|-+|+|.|+.+.  .+||-|+++==.=.-.|.+.++++|
T Consensus         5 F~~Gd~V~I~~--GpF~g~~g~V~~i~~~k~rv~V~v~ifGr~t~vel~~~~ie   56 (58)
T d1nz9a_           5 FREGDQVRVVS--GPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVV   56 (58)
T ss_dssp             CCTTCEEEECS--GGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEE
T ss_pred             ccCCCEEEEec--cCCCCCEEEEEEEcCCCCEEEEEEEecCCCceEeeCHHHEE
Confidence            56899999986  48999999999994  3689999986333455677776664

>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.27  Score=35.93  Aligned_cols=46  Identities=20%  Similarity=0.381  Sum_probs=40.0

Q ss_pred             CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeCCCcceeEEe
Q 044915          161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITF  208 (238)
Q Consensus       161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeGgnWdKlvtf  208 (238)
                      ..+.+||.+-|+||.|+..-+.-.|.+|.++++-|-|+|  ||.=..|
T Consensus        26 ~~F~~GmklEavd~~~~~~i~vAtV~~v~g~~l~v~~DG--~~~~~df   71 (106)
T d1oz2a3          26 HSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDG--WSHGYDF   71 (106)
T ss_dssp             CCCCTTCEEEEECSSSTTCEEEEEEEEECSSEEEEEETT--BCGGGCE
T ss_pred             cccccCCEEEEEcCCCCceEEEEEEEEEECCEEEEEECC--CCCCCCE
Confidence            468999999999999999999999999999999999998  6543333

>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.33  E-value=0.28  Score=37.18  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=36.9

Q ss_pred             CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915          161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG  199 (238)
Q Consensus       161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG  199 (238)
                      ..+.+||-+-|+||.++..-....|.+|.++++-|.|+|
T Consensus        12 ~~F~~GmKLEavd~~~~~~i~vAtV~~v~g~~l~v~~DG   50 (127)
T d1wjsa_          12 NGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDG   50 (127)
T ss_dssp             CSCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETT
T ss_pred             CCCccCCEEEEEcCCCCceEEEEEEEEEECCEEEEEeCC
Confidence            458999999999999999999999999999999999999

>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.68  Score=34.01  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=37.0

Q ss_pred             CcccCCceEEEeCCCCcccceeceEEEeeCCeeEEEeeC
Q 044915          161 PLLMPGMFAIVKNPNNPFYMYCGIVQRITDGKAGVLFEG  199 (238)
Q Consensus       161 ~~ilPG~~v~V~n~~~~y~~y~G~VQRvtdgkaaVLFeG  199 (238)
                      -.+.+||-+-+.||.|+++-....|.+|.++++-|-|+|
T Consensus        12 ~~F~vGmKLEavD~~~~~~i~vAtV~~v~g~~l~v~~DG   50 (107)
T d1wjqa_          12 HGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDG   50 (107)
T ss_dssp             SSCCSSCEEEEECTTCTTCEEEEEEEEECSSCEEEECSS
T ss_pred             ccCcCCCEEEEEcCCCCeeEEEEEEEEEECCEEEEEECC
Confidence            458999999999999999999999999999999999997