Citrus Sinensis ID: 044974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLQSPPLVLGVIAWLFISTAYsaqlpflrwkgNSFLAAVCMVFMcgllpqvpffFHVQKYllgrpmeitkpLMFASAFMTCLSVAIAFVKDlhdvegdrehGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRArnvdlsnnesIFSFYMFIWQA
Flexible Loop (DISEMBL)
MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQA
Low Complexity Region (SEG)
MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQA
Disordered region (IsUnstruct)
******LVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW**
Disordered Region (DISOPRED)
*LQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQA
Disordered Region (DISEMBL)
MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQA
Disordered Region (DISPRO)
*LQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQA
Transmembrane Helix (TMHMM)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	no	no	0.978	0.440	0.483	4e-45
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.967	0.447	0.454	1e-42
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.994	0.441	0.403	9e-37
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.967	0.430	0.426	2e-36
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.901	0.424	0.301	5e-10
Q0D576	379	Probable homogentisate ph	no	no	0.901	0.432	0.284	4e-09

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  180 bits (457), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 126/178 (70%)

Query: 4   SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
           S PL L +     + TAYS  LPFLRWK ++ +AA+C++ +  ++ Q+ FF H+Q ++  
Sbjct: 214 SQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFR 273

Query: 64  RPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYML 123
           RP   T+PL+FA+AFMT  SV IA  KD+ D+EGDR  GI++ SV LG++KVFW+ V +L
Sbjct: 274 RPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLL 333

Query: 124 STAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
             AY  A+L+GA+S+ L SK  T++GHA L   LW+R+R++DL++  +I SFYMFIW+
Sbjct: 334 EMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  172 bits (436), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 121/176 (68%)

Query: 6   PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP 65
           PL   +     + TAYS  LP LRWK  + +AA+C++ +  ++ Q+ F+ H+Q ++ GRP
Sbjct: 205 PLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query: 66  MEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLST 125
           +  T+PL+FA+AFM+  SV IA  KD+ D+EGD+  GI++ SV LG+++VFW  V +L  
Sbjct: 265 ILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQM 324

Query: 126 AYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
           AY  A+LVGA+S F+ SK+++++GH  L   LW RA++VDLS+   I S YMFIW+
Sbjct: 325 AYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  152 bits (385), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 114/181 (62%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           ++ S PL   V     +++AY+  LP LRWK    L A+  +    +   + FF H+Q  
Sbjct: 217 IVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTC 276

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           +  RP    +PL+F +A ++  ++ IA  KD+ D+EGD + GIQ+LS+ LG ++VFW+ V
Sbjct: 277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
            +L   YG  +LVGA+S  L SK++T++GHA L   LW+ A++VDL++N  + SFYMFIW
Sbjct: 337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396

Query: 181 Q 181
           +
Sbjct: 397 K 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 110/176 (62%)

Query: 6   PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP 65
           PL+  ++      TAYS  +P LRWK   F+AA+CM+    L   + +F H+Q  +L RP
Sbjct: 221 PLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRP 280

Query: 66  MEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLST 125
           +   + L F  AFMT  S+ +A  KD+ DVEGD+EHGI + +V LG+++ FW+ V     
Sbjct: 281 IGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEM 340

Query: 126 AYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
           A+G  +L GAS S   +K+ T +G+A L   LW++A++VDLS+  S  SFYMFIW+
Sbjct: 341 AFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 5/169 (2%)

Query: 15  LFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMF 74
           LF+ T YS  +P LR K     A + +  + G L     + H  +  LG P + + P+ F
Sbjct: 209 LFLGTIYS--VPPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAF 265

Query: 75  ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG 134
            ++F+T  ++ IA  KDL DVEGDR+  I TL+  LG   + +L   +L   Y +A+ + 
Sbjct: 266 ITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLA 325

Query: 135 ASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSN--NESIFSFYMFIWQ 181
                +    + I  H  L   L  +   ++ +N   E+I  +Y FIW 
Sbjct: 326 FYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWN 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 15  LFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMF 74
           LF+ T YS  +P  R K     A + +  + G L     ++  +   LG   + + P+ F
Sbjct: 202 LFLGTIYS--VPPFRLKRYPVAAFLIIATVRGFLLNFGVYYATRA-ALGLTFQWSSPVAF 258

Query: 75  ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG 134
            + F+T  ++ IA  KDL DVEGDR++ I TL+  LG   + +L   +L   Y AA+ V 
Sbjct: 259 ITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVA 318

Query: 135 ASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSN--NESIFSFYMFIWQ 181
                   + V +  HA L + +  +   ++ +    ++I  +Y FIW 
Sbjct: 319 FLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
224143266	284	predicted protein [Populus trichocarpa]	0.994	0.637	0.535	6e-50
374461300	239	aromatic prenyltransferase, partial [Epi	0.994	0.757	0.502	4e-48
219842170	411	homogentisate geranylgeranyl transferase	0.983	0.435	0.524	5e-46
295656253	401	homogentisate geranylgeranyl transferase	0.994	0.451	0.486	2e-45
171190284	317	homogentisate geranylgeranyl transferase	0.994	0.570	0.513	9e-45
33391138	408	homogentisic acid geranylgeranyl transfe	0.978	0.436	0.488	1e-44
296082088	398	unnamed protein product [Vitis vinifera]	1.0	0.457	0.5	3e-44
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.983	0.438	0.474	5e-44
297606269	278	Os06g0646900 [Oryza sativa Japonica Grou	0.983	0.643	0.474	5e-44
218198652	414	hypothetical protein OsI_23899 [Oryza sa	0.983	0.432	0.474	6e-44

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 133/181 (73%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           M QSP L   ++    + + YS +LPFLRWK  +FLAA C++ +  ++ Q+ FF H+QK+
Sbjct: 104 MFQSPLLFSALLISCVLGSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKF 163

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           +LG+   +T+ L+FA+AFM   S  IA  KD+ DV+GDR++GIQ+ SV LG+E+VFWL V
Sbjct: 164 VLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCV 223

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
            ML  AYGAAV+VGASS+FL SK +TI+GH TL   LW RAR+VDL++ +SI SFYMFIW
Sbjct: 224 NMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIW 283

Query: 181 Q 181
           +
Sbjct: 284 K 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 128/181 (70%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           M +SPPL+  ++    ++TAYS  LPFLRWK ++ L +VC++ +  L+  + FF H+QKY
Sbjct: 38  MFKSPPLLYSILTVFLLATAYSLHLPFLRWKKSAVLTSVCIISVRALVIPLGFFLHMQKY 97

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           +LGRP  ITKP+MFA AFM  +S  IA +KD+ DV+GD   G+Q+L++ LGKEKVFWL V
Sbjct: 98  VLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGLQSLTIRLGKEKVFWLGV 157

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
             L  AYG AV+VGASS+ + +K++T++GH  L   LW RAR V +S   S  SFY+F+W
Sbjct: 158 STLLMAYGTAVIVGASSTLMSNKIITVLGHCILASILWTRARTVVISEPASTLSFYLFVW 217

Query: 181 Q 181
           +
Sbjct: 218 K 218

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 133/181 (73%), Gaps = 2/181 (1%)

Query: 3   QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLL 62
           QSPPL+  ++    + + YS +LPFLRWK ++FLAA C++ +  ++ Q+ FF H+QK++L
Sbjct: 218 QSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVL 277

Query: 63  GRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYM 122
           G+ + I + LMFA+AFM   S AIA  KD+ DVEGDR++GIQ+ SV LG+E+V WL V M
Sbjct: 278 GKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNM 337

Query: 123 LSTAYGAAVLVGAS--SSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
           L  AYGAAV+ GAS  SS L  KL+T+IGH+T+   LW +A+ VDL++ +SI SFYMFIW
Sbjct: 338 LLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIW 397

Query: 181 Q 181
           +
Sbjct: 398 K 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 127/181 (70%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           + QSPP+   ++      +AYS +LP LRWK N+FLAA  ++ +  +   + FF+H+QKY
Sbjct: 208 VFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKY 267

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           +LGRPM   + L FA+  ++  +  IA  KD+ DV+GDR+ GIQ+ SV LG+++VFWL +
Sbjct: 268 VLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCI 327

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
            +L  AY +A+++GASSSFLLSKLVT+IGH TL   LW RA +V+L +N S+ SFYM IW
Sbjct: 328 GILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIW 387

Query: 181 Q 181
           +
Sbjct: 388 K 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 129/181 (71%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           M QSPP++  ++   F  TAYS  +P  RWK N+FLAA+C+V +  +  Q+  F+H+Q+Y
Sbjct: 124 MFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQY 183

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           +LGRP+  ++ L FA   MT     IA  KD+ DV+GDR+ GIQT++V LGK++VFWL +
Sbjct: 184 VLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCI 243

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
            +L  AYG+AV++G+SSS LLSKLVT+ GH  L   LW RA +VDL +N+SI SFYMFIW
Sbjct: 244 TILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIW 303

Query: 181 Q 181
           +
Sbjct: 304 K 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/178 (48%), Positives = 125/178 (70%)

Query: 4   SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLG 63
           S PL+  +I    + +AYS + PFLRWK ++ LAA C++F+  +L Q+ FF H+Q+++L 
Sbjct: 218 SAPLMCALIVSFLLGSAYSIEAPFLRWKRHALLAASCILFVRAILVQLAFFAHMQQHVLK 277

Query: 64  RPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYML 123
           RP+  TK L+FA+ FM C S  IA  KD+ DV+GDR+ GIQ+LSV LG ++V+ L + +L
Sbjct: 278 RPLAATKSLVFATLFMCCFSAVIALFKDIPDVDGDRDFGIQSLSVRLGPQRVYQLCISIL 337

Query: 124 STAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
            TAYGAA LVGASS+ L  K++T+ GH  L L LW RA++ ++ N   + SFYMFIW+
Sbjct: 338 LTAYGAATLVGASSTNLFQKIITVSGHGLLALTLWQRAQHFEVENQARVTSFYMFIWK 395

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 124/182 (68%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           M QSPPL   ++    + TAYS ++P LRWK    LAA C++ +  ++ Q+ FF H+QK+
Sbjct: 180 MFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKH 239

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           +LGR +  TK ++F  AFM   S  IA  KD+ DV+GDRE GIQ+ +V LG++KVFWL V
Sbjct: 240 VLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCV 299

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
            ML  AYGAA ++GASSS +  K  T+  H  L L LW RA++VDLS+ E++ SFYMFIW
Sbjct: 300 NMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIW 359

Query: 181 QA 182
           +A
Sbjct: 360 KA 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 123/179 (68%)

Query: 3   QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLL 62
           +S PL+  +    F+ +AYS   P LRWK N+FLAA C++F+  +L Q+ FF H+Q+++L
Sbjct: 217 KSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVL 276

Query: 63  GRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYM 122
            RP+  TK ++FA+ FM C S  IA  KD+ D++GDR  G+++LSV LG E+V+WL + +
Sbjct: 277 KRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINI 336

Query: 123 LSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
           L TAYGAA+L GASS+ L   ++T+ GH  L   LW RA++ D+ N   I SFYMFIW+
Sbjct: 337 LLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWK 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297606269|ref|NP_001058202.2| Os06g0646900 [Oryza sativa Japonica Group] gi|255677275|dbj|BAF20116.2| Os06g0646900, partial [Oryza sativa Japonica Group]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 123/179 (68%)

Query: 3   QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLL 62
           +S PL+  +    F+ +AYS   P LRWK N+FLAA C++F+  +L Q+ FF H+Q+++L
Sbjct: 87  KSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVL 146

Query: 63  GRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYM 122
            RP+  TK ++FA+ FM C S  IA  KD+ D++GDR  G+++LSV LG E+V+WL + +
Sbjct: 147 KRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINI 206

Query: 123 LSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
           L TAYGAA+L GASS+ L   ++T+ GH  L   LW RA++ D+ N   I SFYMFIW+
Sbjct: 207 LLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWK 265

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198652|gb|EEC81079.1| hypothetical protein OsI_23899 [Oryza sativa Indica Group]

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 123/179 (68%)

Query: 3   QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLL 62
           +S PL+  +    F+ +AYS   P LRWK N+FLAA C++F+  +L Q+ FF H+Q+++L
Sbjct: 223 KSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVL 282

Query: 63  GRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYM 122
            RP+  TK ++FA+ FM C S  IA  KD+ D++GDR  G+++LSV LG E+V+WL + +
Sbjct: 283 KRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCINI 342

Query: 123 LSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
           L TAYGAA+L GASS+ L   ++T+ GH  L   LW RA++ D+ N   I SFYMFIW+
Sbjct: 343 LLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIWK 401

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.967	0.447	0.454	1.4e-41
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.994	0.441	0.403	2.1e-36
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.967	0.432	0.409	7.2e-36
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.895	0.414	0.303	5.9e-13

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 80/176 (45%), Positives = 121/176 (68%)

Query:     6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP 65
             PL   +     + TAYS  LP LRWK  + +AA+C++ +  ++ Q+ F+ H+Q ++ GRP
Sbjct:   205 PLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query:    66 MEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLST 125
             +  T+PL+FA+AFM+  SV IA  KD+ D+EGD+  GI++ SV LG+++VFW  V +L  
Sbjct:   265 ILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQM 324

Query:   126 AYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
             AY  A+LVGA+S F+ SK+++++GH  L   LW RA++VDLS+   I S YMFIW+
Sbjct:   325 AYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 73/181 (40%), Positives = 114/181 (62%)

Query:     1 MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
             ++ S PL   V     +++AY+  LP LRWK    L A+  +    +   + FF H+Q  
Sbjct:   217 IVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTC 276

Query:    61 LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
             +  RP    +PL+F +A ++  ++ IA  KD+ D+EGD + GIQ+LS+ LG ++VFW+ V
Sbjct:   277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query:   121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
              +L   YG  +LVGA+S  L SK++T++GHA L   LW+ A++VDL++N  + SFYMFIW
Sbjct:   337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396

Query:   181 Q 181
             +
Sbjct:   397 K 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 72/176 (40%), Positives = 109/176 (61%)

Query:     6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP 65
             PL   V      + AY+  LP LRWK    L A+  +    +   + FF H+Q  +  RP
Sbjct:   219 PLFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRP 278

Query:    66 MEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLST 125
                 +PL+F +A ++  ++ IA  KD+ D+EGD + GIQ+LS+ LG ++VFW+ V +L  
Sbjct:   279 TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEM 338

Query:   126 AYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
             AYG  +LVGA+S  L SK++T++GHA L   LW+ A++ DL++N  + SFYMFIW+
Sbjct:   339 AYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 51/168 (30%), Positives = 82/168 (48%)

Query:    15 LFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMF 74
             LF+ T YS  +P LR K     A + +  + G L     + H  +  LG P + + P+ F
Sbjct:   216 LFLGTIYS--VPPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAF 272

Query:    75 ASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG 134
              ++F+T  ++ IA  KDL DVEGDR+  I TL+  LG   + +L   +L   Y +A+ + 
Sbjct:   273 ITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLA 332

Query:   135 ASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSN--NESIFSFYMFIW 180
                  +    + I  H  L   L  +   ++ +N   E+I  +Y FIW
Sbjct:   333 FYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIW 380


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.140   0.443    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       182   0.00098  109 3  11 21  0.43    31
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.50u 0.07s 16.57t   Elapsed:  00:00:04
  Total cpu time:  16.50u 0.07s 16.57t   Elapsed:  00:00:04
  Start:  Mon May 20 18:45:46 2013   End:  Mon May 20 18:45:50 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	7e-71
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	9e-37
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	4e-09
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	8e-07
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-06
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	4e-05
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	4e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	6e-05
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	2e-04
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-04
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	0.001
PRK06080	293	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate oct	0.001

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  215 bits (549), Expect = 7e-71
 Identities = 92/181 (50%), Positives = 127/181 (70%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           ++ S PL   +     + TAYS  LP LRWK ++  AA C++ +  ++ Q+ FF H+Q +
Sbjct: 87  IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH 146

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           +LGRP   T+PL+FA+AFM   SV IA  KD+ DVEGDR  GI++ SV LG+++VFWL V
Sbjct: 147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV 206

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
            +L  AY AA+LVGASSSFL SK++T++GH  L   LW RA++VDLS+  +I SFYMFIW
Sbjct: 207 NLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW 266

Query: 181 Q 181
           +
Sbjct: 267 K 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  128 bits (325), Expect = 9e-37
 Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
            L  P L++ V   L I TAYS  LP +R K    LAA+C+  + G++  +  F H Q +
Sbjct: 116 ALLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-W 172

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
           LLG  + I   +   + F+   + AIA  KD+ D+EGDR++ I T ++ LGK+ VF LS 
Sbjct: 173 LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSC 232

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
           ++L+  Y   + VG  S   ++    I+ H  LL  LW R++ VDL + ++I  FY FIW
Sbjct: 233 WVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIW 292

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 15/180 (8%)

Query: 1   MLQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKY 60
           +L  P L+L  +  L +   YS   P LR K    L  + +    GLL  +  +      
Sbjct: 88  LLLGPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGAYA----- 139

Query: 61  LLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
                 +I  PL+  +  +  LS+AI    D+ DVEGDR+ GI+TL V LG+++   L  
Sbjct: 140 ---VGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYA 196

Query: 121 YMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIW 180
                   AA+L+      LL+ L+ ++    L L L   AR +   N E     ++FI 
Sbjct: 197 ----LLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIA 252

Length = 259

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 46  GLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQT 105
            L P +   ++ Q         I   L+  + F+   S     V D+ D+EGDR+ G++T
Sbjct: 144 ALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKT 196

Query: 106 LSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVD 165
           L ++LGKE+     + +        +L   +    L  LV ++  A +L ++  +    D
Sbjct: 197 LPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAYVLYYI-IKLFAAD 255

Query: 166 LSNNESIFSF 175
              +    S 
Sbjct: 256 DKKDLLYLSL 265

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 17/181 (9%)

Query: 2   LQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYL 61
           L +P   L  +A L ++ AY         K  +FL  + +    GL              
Sbjct: 113 LLNPLAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAA------A 160

Query: 62  LGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVY 121
           +G  + +   L+  +A +   ++    +  + D+EGDR+ G+++L V+ G +K   L++ 
Sbjct: 161 VGGSLPLLAWLLLLAAIL--WTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALL 218

Query: 122 MLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFSFYMFIWQ 181
           +L     +A+LV       L  L+ ++G     L L ++   VD+ +  + F+ +     
Sbjct: 219 LLLA---SALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLL 275

Query: 182 A 182
            
Sbjct: 276 L 276

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 86  IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTA 126
           I  + D   VEGDR+ G+++L VM+G ++   ++V  ++  
Sbjct: 177 IMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVF 217

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 84  VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYG--AAVLVGASSSFLL 141
           + IA V D   VEGDR  G+Q+L V  G E   W+ V  +    G  AA L+    +   
Sbjct: 197 LGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYA 256

Query: 142 SKLVTII 148
           + LV +I
Sbjct: 257 AALVALI 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 73  MFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVL 132
           +FA A +  L+  I  +KD+ D+EGDR  G +TL +++G  K  +++   L  A  A+ L
Sbjct: 162 LFALAALATLAREI--IKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219

Query: 133 VGASSSFLLSKLVTI-IGHATLLLFLWHRARNVDLSNNESIFSFYMF 178
               S+F L  LV +      +L   +   +  D + ++ +  + MF
Sbjct: 220 PYLLSTFGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMF 266

Length = 276

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 67  EITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSV 120
            +T  ++  +   +   + IA V D   +EGDR  G+Q+L V  G E   W+ V
Sbjct: 249 TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV 302

Length = 375

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 86  IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAV 131
           I  + D   VEGDR+ G+++L V+ G++    ++  ++     A +
Sbjct: 205 IMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI 250

Length = 314

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 14/115 (12%)

Query: 11  VIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPM--EI 68
           ++A LF++  YSA  P L+ K N   +A          P V F +    +L    +  +I
Sbjct: 131 ILAGLFVAYIYSA--PPLKLKKNILTSA----------PAVGFSYGFITFLSANALFSDI 178

Query: 69  TKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYML 123
              +++ +     +++A+  + D   VEGD+E G+++L+VM+G +  F +S  ++
Sbjct: 179 RPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIII 233

Length = 331

>gnl|CDD|235695 PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 67  EITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTA 126
            +   +   +     L  A+    ++ D+E DRE+G  TL+V LG +    L   +L+ A
Sbjct: 165 TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALA 224

Query: 127 YGAAVLVGASSSFLLSKLVTIIGHATLLLF 156
           Y   VL        L  L +  G   LL  
Sbjct: 225 YLCIVL------LALLGLASPWGLLFLLSL 248

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	99.87
PRK12872	285	ubiA prenyltransferase; Reviewed	99.86
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.86
PRK13105	282	ubiA prenyltransferase; Reviewed	99.86
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.86
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.86
PLN02922	315	prenyltransferase	99.85
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.84
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.84
PRK12895	286	ubiA prenyltransferase; Reviewed	99.83
PRK12888	284	ubiA prenyltransferase; Reviewed	99.83
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.83
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.83
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.83
PLN00012	375	chlorophyll synthetase; Provisional	99.81
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.81
PRK13106	300	ubiA prenyltransferase; Reviewed	99.81
PRK13595	292	ubiA prenyltransferase; Provisional	99.81
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.8
PRK12884	279	ubiA prenyltransferase; Reviewed	99.8
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.79
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.79
PRK12876	300	ubiA prenyltransferase; Reviewed	99.78
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.77
PRK12882	276	ubiA prenyltransferase; Reviewed	99.77
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.75
PRK12886	291	ubiA prenyltransferase; Reviewed	99.75
PRK13591	307	ubiA prenyltransferase; Provisional	99.75
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.74
PRK12874	291	ubiA prenyltransferase; Reviewed	99.74
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.73
PRK12875	282	ubiA prenyltransferase; Reviewed	99.73
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.73
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.72
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.71
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.7
PRK12873	294	ubiA prenyltransferase; Reviewed	99.69
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.65
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.6
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.56
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.53
PRK12871	297	ubiA prenyltransferase; Reviewed	99.53
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.2
PRK13592	299	ubiA prenyltransferase; Provisional	99.17
PLN02776	341	prenyltransferase	98.94
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	97.87
KOG4581	359	consensus Predicted membrane protein [Function unk	97.17
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	96.86
PRK12884	279	ubiA prenyltransferase; Reviewed	95.41
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	94.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	94.74
PRK08238	479	hypothetical protein; Validated	94.41
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	94.15
PRK13592	299	ubiA prenyltransferase; Provisional	93.28
PRK13595	292	ubiA prenyltransferase; Provisional	93.27
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	93.24
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	92.97
PRK12872	285	ubiA prenyltransferase; Reviewed	92.91
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	92.8
PRK12882	276	ubiA prenyltransferase; Reviewed	92.54
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	92.48
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	91.69
PRK12392	331	bacteriochlorophyll c synthase; Provisional	91.26
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	90.66
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	90.59
PRK12875	282	ubiA prenyltransferase; Reviewed	89.92
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	89.88
PRK12871	297	ubiA prenyltransferase; Reviewed	89.79
PRK13591	307	ubiA prenyltransferase; Provisional	89.76
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	89.18
PRK05951	296	ubiA prenyltransferase; Reviewed	89.07
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	89.0
PRK08238	479	hypothetical protein; Validated	88.17
PRK12873	294	ubiA prenyltransferase; Reviewed	88.16
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.13
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	87.84
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	87.15
PLN00012	375	chlorophyll synthetase; Provisional	87.09
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	86.05
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	85.67
PRK04375	296	protoheme IX farnesyltransferase; Provisional	85.47
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	85.45
PRK13106	300	ubiA prenyltransferase; Reviewed	85.23
PRK13362	306	protoheme IX farnesyltransferase; Provisional	85.03
PRK11383	145	hypothetical protein; Provisional	83.47
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	82.98
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	82.68
PRK12886	291	ubiA prenyltransferase; Reviewed	82.37
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	82.15
PRK12874	291	ubiA prenyltransferase; Reviewed	81.9
PRK12895	286	ubiA prenyltransferase; Reviewed	81.81
PRK12876	300	ubiA prenyltransferase; Reviewed	81.58
PLN02776	341	prenyltransferase	81.07
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	80.91

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=6.5e-41  Score=279.92  Aligned_cols=181  Identities=51%  Similarity=0.895  Sum_probs=168.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 044974            2 LQSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTC   81 (182)
Q Consensus         2 ~~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~   81 (182)
                      .|++|++.++..+.+++++||.++||+|+|++|++++.|+....+...++|+|.|+|+.++|.+...+.+.++..+++++
T Consensus        88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~  167 (280)
T PLN02878         88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF  167 (280)
T ss_pred             HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence            46678999999999999999977799999999999999988888888899999999999999766666777777779999


Q ss_pred             HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044974           82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA  161 (182)
Q Consensus        82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  161 (182)
                      +..+++++||+||+||||++|+||+|+++|+|++.+++..++.++|+..+.++..++..++..++.+||++++..+|+|.
T Consensus       168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs  247 (280)
T PLN02878        168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA  247 (280)
T ss_pred             HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999888878899999999999999999999


Q ss_pred             hhcCCCChhHHHHHHHHhhcC
Q 044974          162 RNVDLSNNESIFSFYMFIWQA  182 (182)
Q Consensus       162 ~~v~~~~~~~~~~~y~~~w~~  182 (182)
                      +.+|.+++++++||||||||+
T Consensus       248 ~~vD~~sk~~i~~fY~fiwkl  268 (280)
T PLN02878        248 QSVDLSSKAAITSFYMFIWKL  268 (280)
T ss_pred             HhcCcccHHHHHHHHHHHHHH
Confidence            999999999999999999995

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=4.3e-37  Score=262.18  Aligned_cols=177  Identities=37%  Similarity=0.612  Sum_probs=158.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      .|++.+..+.++.+++++||  .||+|+||+|+.++++++..+|.+..+|.+.|.+.. .+....++.+.++.+++++++
T Consensus       118 ~~~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  194 (308)
T PRK12887        118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVF  194 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHH
Confidence            46888888999999999999  999999999999999999999988888888876543 333334567777888899999


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR  162 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  162 (182)
                      +.+++++||+||+|+||+.|+||+|+++|+|++.+++..++..+|+..+..+......++..++.++|++++..+++|.+
T Consensus       195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK12887        195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ  274 (308)
T ss_pred             HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988877766667677777999999999999999


Q ss_pred             hcCCCChhHHHHHHHHhhcC
Q 044974          163 NVDLSNNESIFSFYMFIWQA  182 (182)
Q Consensus       163 ~v~~~~~~~~~~~y~~~w~~  182 (182)
                      .+|.+|++|++||||||||+
T Consensus       275 ~~~~~~~~~~~~~y~~iw~l  294 (308)
T PRK12887        275 RVDLQDKQAIAQFYQFIWKL  294 (308)
T ss_pred             hcCcccchHHHHHHHHHHHH
Confidence            99999999999999999995

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=1.4e-20  Score=159.83  Aligned_cols=165  Identities=17%  Similarity=0.227  Sum_probs=130.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      .+++.+...+++.++++.||  .||+++|++| +|++.+++.+|....++.++. |+.      .++++.+..+....++
T Consensus       114 ~~~~~l~l~~~~~~~~~~Yt--~~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~~------~~~~~~~~~sl~~~l~  183 (296)
T PRK05951        114 RGIGAVTLALLGVFLWTCYM--GPPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WLG------NLSSPNLLAGVPLGLL  183 (296)
T ss_pred             ccHHHHHHHHHHHHHHHHHc--CCCcccCCCC-chHHHHHHHHHHHHHHHHHHH-HhC------cccHHHHHHHHHHHHH
Confidence            45677778889999999999  9999999998 899999999998877777652 432      2456677778888888


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR  162 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  162 (182)
                      +..+...||+||+|+||++|+||+|+++|+|++ +++..+...+|+..+........++....++++.-.....+.++++
T Consensus       184 ~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~  262 (296)
T PRK05951        184 MALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLR  262 (296)
T ss_pred             HHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999 7777777777776665544332333345666777777777888888


Q ss_pred             hcCCCChhHHHHHHHH
Q 044974          163 NVDLSNNESIFSFYMF  178 (182)
Q Consensus       163 ~v~~~~~~~~~~~y~~  178 (182)
                      ..|.++.+.+...++.
T Consensus       263 ~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        263 KFPPDPDEATVQLFML  278 (296)
T ss_pred             hCcccccHHHHHHHHH
Confidence            8887777777776654

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=1.1e-20  Score=158.86  Aligned_cols=157  Identities=21%  Similarity=0.290  Sum_probs=121.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCch-hhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFL-RWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTC   81 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~-rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~   81 (182)
                      ++|+.+..+.++.++++.||  .||. |+|+.|..+|++++..+|..+.++.+.+ ++      ..++.+....+.+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~-~~------~~~~~~~~~~~~~~fl  172 (285)
T PRK12872        102 GGPKFALIFIIPLILGILYS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY-YQ------LTIFSLLLLYAVFIFL  172 (285)
T ss_pred             ccHHHHHHHHHHHHHHHHHh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh-cc------cccchHHHHHHHHHHH
Confidence            47888888889999999999  7766 6999999999999999997766554432 11      1134555666777778


Q ss_pred             HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044974           82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA  161 (182)
Q Consensus        82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  161 (182)
                      ++.+++++||+||+|+||++|+||+|+++|+|++++++..++..+++.++........   ...+.....+....+.++|
T Consensus       173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  249 (285)
T PRK12872        173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLL---PLLLLVLLLLLAYVLYYII  249 (285)
T ss_pred             HHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHh---hHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999888865444322   2334444445556677777


Q ss_pred             hhcCCCChhH
Q 044974          162 RNVDLSNNES  171 (182)
Q Consensus       162 ~~v~~~~~~~  171 (182)
                      +..+++|++.
T Consensus       250 ~~~~~~~~~~  259 (285)
T PRK12872        250 KLFAADDKKD  259 (285)
T ss_pred             HHHhcccccc
Confidence            7776666544

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.86  E-value=1e-20  Score=162.92  Aligned_cols=153  Identities=22%  Similarity=0.358  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974            5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV   84 (182)
Q Consensus         5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   84 (182)
                      ++++..++++++++++||  .||+|+||+++.+++.+++.++.....+..     ...|.   .+++.+.+....++++.
T Consensus       125 ~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~  194 (331)
T PRK12392        125 MVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAI  194 (331)
T ss_pred             HHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHH
Confidence            445555678899999999  999999999998999888888755443321     22333   45666667778888999


Q ss_pred             HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh-
Q 044974           85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN-  163 (182)
Q Consensus        85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  163 (182)
                      +++++||+||+|+||+.|+||+|+++|+|++.+++...+.++.+..+..+......   ..++....+++..+.+|.+. 
T Consensus       195 ~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        195 ALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFT---VLMYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888878887777766665553   34444455555555555543 


Q ss_pred             cCCCChh
Q 044974          164 VDLSNNE  170 (182)
Q Consensus       164 v~~~~~~  170 (182)
                      -||++..
T Consensus       272 r~p~~~~  278 (331)
T PRK12392        272 RDPKGGI  278 (331)
T ss_pred             hChhhhh
Confidence            3666543

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=1.6e-20  Score=158.53  Aligned_cols=122  Identities=24%  Similarity=0.226  Sum_probs=98.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      ++|+.+..+.++++.++.||  .||.|+|++|+.++++....+.....+|.+.      .|.  ..+++.+.++..+.+|
T Consensus       103 ~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~------~~~--~~~~~~~l~~~~~~~~  172 (282)
T PRK13105        103 GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVL------AGA--PFTAALWAVLAAFFLW  172 (282)
T ss_pred             hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHH------hhc--cccHHHHHHHHHHHHH
Confidence            46777778889999999999  9999999999888864444332223333322      122  2456667778888889


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG  134 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~  134 (182)
                      +.+++++||+||+|+||++|+||+|+++|+|++.+++..++..++++.+..+
T Consensus       173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        173 GMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887544

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.86  E-value=2.3e-20  Score=157.90  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      ++|+++..+.++.+.++.||  .||+++|++| +|++.+++.+|.+...+.++ .|+.      .+++..+..++.+.+.
T Consensus       104 ~~~~~l~lg~~g~~~~~~Yt--~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-vqt~------~~~~~~~l~sl~~gl~  173 (285)
T TIGR02235       104 WQITVLALVGLCCFLGYLYQ--GPPFRLGYQG-LGEPICWLCFGPLAIAAALY-AQSQ------SFSLIPWKASILVGLA  173 (285)
T ss_pred             hhHHHHHHHHHHHHHHHhhc--CCCcccCCCC-ccHHHHHHHHHHHHHHHHHH-HhCC------cCcHHHHHHHHHHHHH
Confidence            56889999999999999999  9999999999 79999999999888877765 3542      3677788888899999


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS  136 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~  136 (182)
                      +.++...||+||+|+||+.|+||+|+++|+|++.+++..+...+|++.+.....
T Consensus       174 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       174 TTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG  227 (285)
T ss_pred             HHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988765444

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.86  E-value=2.2e-20  Score=159.16  Aligned_cols=124  Identities=19%  Similarity=0.187  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      +||+++..+.++.+++++||  .||+|+|++| +|++.+++.+|.+...+.++ .|+.      .+++..+..++...+.
T Consensus       117 ~g~~~l~ig~~g~~~~~~YT--~gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-v~t~------~~~~~~~~~sl~~gll  186 (304)
T PRK07419        117 SDWTVLGLVLLCCFLGYLYQ--GPPFRLGYQG-LGEPLCFLAFGPLAVAAALY-SQTP------SWSLIPLAASIILGLA  186 (304)
T ss_pred             hcHHHHHHHHHHHHHhhecc--CCCcccCCCC-chHHHHHHHHHHHHHHHHHH-HhcC------CCCHHHHHHHHHHHHH
Confidence            57999999999999999999  9999999999 79999999999888877765 3442      3567778888889999


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS  136 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~  136 (182)
                      +.++...||+||+|+||+.|+||+|+++|+|++.+++..+...+|++.+.....
T Consensus       187 ~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~  240 (304)
T PRK07419        187 TSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL  240 (304)
T ss_pred             HHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988765544

>PLN02922 prenyltransferase

Probab=99.85  E-value=2.8e-20  Score=159.30  Aligned_cols=130  Identities=21%  Similarity=0.275  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCC----ccchHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP----MEITKPLMFASAF   78 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~   78 (182)
                      ++|+++..+.++.+.+++||  .||+|+|++| +|++.+++.+|.+...+.|+ .|+...+..    ..+++..+..++.
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~g-LGE~~v~i~fG~l~v~g~y~-~~~~~~~~~~~~~~~~~~~~~l~slp  196 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQ--CPPFRLSYKG-LGEPLCFAAFGPLATTAFYL-ALASGAGGSEMAILPLTPTVLSASVL  196 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHh--cCCcccccCc-chHHHHHHHHHHHHHHHHHH-HhcccccccccccccccHHHHHHHHH
Confidence            57899999999999999999  9999999999 78999999999877766654 454322110    0246677788999


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           79 MTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS  136 (182)
Q Consensus        79 ~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~  136 (182)
                      +.+.+.++...||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+.....
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  254 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLL  254 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888765544

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.84  E-value=1.3e-19  Score=154.65  Aligned_cols=120  Identities=27%  Similarity=0.373  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      +++.+..++++.+++++||  .||+++|+++.++++.++..++..+..+.+.     ..|.   +++..+..+...++++
T Consensus       127 ~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a-----~~g~---~~~~~~l~~~~~~l~~  196 (306)
T TIGR02056       127 FPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAGHA-----LFGE---LNPDIAVLTLIYSIAG  196 (306)
T ss_pred             chHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHHHH-----HhCC---CcHHHHHHHHHHHHHH
Confidence            4677778889999999999  9999999999899998887777555443321     1232   5666777788888899


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLV  133 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~  133 (182)
                      .++++.||+||+|+||+.|+||+|+++|+|++.+++..+...++.+.+..
T Consensus       197 ~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~  246 (306)
T TIGR02056       197 LGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAY  246 (306)
T ss_pred             HHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888877766553

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.84  E-value=1.1e-19  Score=153.57  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHH
Q 044974            6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVA   85 (182)
Q Consensus         6 ~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~   85 (182)
                      +++..++++.+.+++||  .||+|+|++| +|++.+++.+|.+...+.++ .|+.      .+++..+..+....+.+.+
T Consensus       110 ~~l~lg~~~~~~~~~Yt--~gP~~l~y~g-LGE~~v~i~~G~l~v~g~~y-vq~~------~~~~~~ll~sl~~g~l~~~  179 (284)
T TIGR00751       110 WFIALGALCIAAAITYT--VGSKPYGYAG-LGDISVLVFFGPLAVLGTQY-LQAH------RVDWVGILPAVATGLLACA  179 (284)
T ss_pred             HHHHHHHHHHHHhHhhc--CCCCccccCc-hHHHHHHHHHHHHHHHHHHH-HhcC------CCCHHHHHHHHHHHHHHHH
Confidence            67778889999999999  9999999999 89999999999888877765 3442      3567777778888888999


Q ss_pred             HHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           86 IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGA  135 (182)
Q Consensus        86 ~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~  135 (182)
                      +...||+||+|+||++|+||+|+++|+|++++++..+...+|++.+....
T Consensus       180 il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~  229 (284)
T TIGR00751       180 VLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML  229 (284)
T ss_pred             HHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987776544

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=3.7e-19  Score=150.50  Aligned_cols=138  Identities=12%  Similarity=0.113  Sum_probs=107.5

Q ss_pred             hhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhh
Q 044974           29 RWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSV  108 (182)
Q Consensus        29 rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv  108 (182)
                      .+||+....++.++...+ ..++..|..    +.|. .......+.+.+.+.+|+.++|++|++||+|+||+.|+||+|+
T Consensus       124 ~~KR~t~~~~~~lG~~~g-~~~l~g~~A----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~  197 (286)
T PRK12895        124 FLKRYTAWRHIYMGSIIG-LGVLAGYLA----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMN  197 (286)
T ss_pred             HHHhCccccHHHHHHHHH-hHHHHHHHH----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHH
Confidence            567777777776666666 344444432    1222 1112233456677888999999999999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHH-HHHH
Q 044974          109 MLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESI-FSFY  176 (182)
Q Consensus       109 ~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~-~~~y  176 (182)
                      ++|+|++.+++..++.++..+....+....    +..|+++..+.+..+.+||+++||+|++++ ..|+
T Consensus       198 ~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        198 TYGIKNGLYISDIFHISSLILFWISGIYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             HHCCccHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999999888887776543    467889999999999999999999999998 5554

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=4.1e-19  Score=150.16  Aligned_cols=150  Identities=14%  Similarity=0.116  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 044974           10 GVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFV   89 (182)
Q Consensus        10 ~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~   89 (182)
                      ...++++....|+      ..||+...+++..++.++.. +++.|.. +   .|.   .+++.+++.+.+.+|+.++|++
T Consensus       113 l~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~-~l~g~~a-~---~g~---~~~~~~ll~~~~~~w~~~~~~i  178 (284)
T PRK12888        113 LAPLAVAPLVVYP------YAKRFTNFPHAILGLAQAVG-PVGAWIA-V---TGT---WSWPAVLLGLAVGLWIGGFDLI  178 (284)
T ss_pred             HHHHHHHHHHHHH------HhhcccchhhHHHHHHHHHH-HHHHHHH-H---cCC---CCHHHHHHHHHHHHHHHHHHHH
Confidence            3345555666787      56888888888888877644 3344442 2   232   4667777888889999999999


Q ss_pred             hhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 044974           90 KDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNN  169 (182)
Q Consensus        90 ~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~  169 (182)
                      |++||+|+||+.|+||+|+++|+|++.+++..++....++....+.....   +..|+++..+....+.+||+.+|++|+
T Consensus       179 ~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~---~~~y~~~~~~~~~~l~~~~~~~~~~~~  255 (284)
T PRK12888        179 YACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGF---GALWWIGLAITAGAFAYEHAIVSPTDL  255 (284)
T ss_pred             HHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHcCccCH
Confidence            99999999999999999999999999999999998888887777766555   457778888999999999999999998


Q ss_pred             hHHH-HHH
Q 044974          170 ESIF-SFY  176 (182)
Q Consensus       170 ~~~~-~~y  176 (182)
                      +.+. .|+
T Consensus       256 ~~~~~~ff  263 (284)
T PRK12888        256 SRVNRAFF  263 (284)
T ss_pred             HHHHHHHH
Confidence            8875 654

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.83  E-value=2.8e-19  Score=151.17  Aligned_cols=124  Identities=22%  Similarity=0.275  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      +++.+..++++.+++++||  .||.|+|+++ ++++.+++.+|.....+.++ .|+   |   ..+++.++.+.+..+++
T Consensus       112 ~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~g-lge~~~~~~~G~~~~~~~~~-~~~---~---~~~~~~~~~~l~~~l~~  181 (293)
T PRK06080        112 GWWLLLLGLLCIAAAILYT--GGPKPYGYTG-LGELFVGVFFGLVIVLGTYY-LQA---G---TVDSAVFLPALPCGLLI  181 (293)
T ss_pred             hHHHHHHHHHHHHHhhhhc--CCCCccCCCC-cHHHHHHHHHHHHHHHHHHH-Hhc---C---CCCHHHHHHHHHHHHHH
Confidence            5777788888999999999  9999999998 68998889888777666544 232   2   24677788888999999


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASS  137 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~  137 (182)
                      .+++..||+||+|+||++|+||+|+++|+|++++++..++.++++..+...+..
T Consensus       182 ~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        182 GAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             HHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888765543

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.83  E-value=1.2e-19  Score=155.55  Aligned_cols=130  Identities=15%  Similarity=0.091  Sum_probs=105.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCc--------c--chH--
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPM--------E--ITK--   70 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~--------~--~~~--   70 (182)
                      .||+++..+.++.+++++||  .||+++|++| +|++.+++.+|.....+.++ .|+...+...        .  +++  
T Consensus       112 ~g~~~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~y-v~t~~~~~~~~~~~~~~~~~~~~~~~  187 (317)
T PRK13387        112 TSWLLLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAVY-INTNTITIESLLFQGEMFTIQGNLIA  187 (317)
T ss_pred             hcHHHHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHHH-HhcCCCchHHHHhcccchhhcchhHH
Confidence            57889999999999999999  9999999999 89999999999877777654 3542111100        0  000  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           71 --PLMFASAFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS  136 (182)
Q Consensus        71 --~~~~l~~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~  136 (182)
                        +.++.+....+.+..++..||+||+|+||++|+||+|+++|+|++.+++..+...+++..+.....
T Consensus       188 ~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        188 IIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM  255 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence              122367888889999999999999999999999999999999999999999999999987765443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.83  E-value=1.5e-19  Score=152.35  Aligned_cols=123  Identities=20%  Similarity=0.274  Sum_probs=97.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      ++|+.+..+.++.+.+++||  .||+|+|++++.+++.++..++..+..+.+.     ..+.   .++..++.+...+++
T Consensus       104 ~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~l~  173 (283)
T TIGR01476       104 GNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-----IFAP---LTWQSVVVALIYSLG  173 (283)
T ss_pred             HHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH-----HhCC---CCHHHHHHHHHHHHH
Confidence            34444666778888999999  9999999999899998888776544433332     1121   456666667777788


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGA  135 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~  135 (182)
                      +.+++.+||+||+|+||++|+||+|+++|+|++++++..+...+++..+....
T Consensus       174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  226 (283)
T TIGR01476       174 AHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLL  226 (283)
T ss_pred             HHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988888876665333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.81  E-value=1.5e-18  Score=151.63  Aligned_cols=118  Identities=25%  Similarity=0.347  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      +++.+...+++++++++||  .||+++|++++.+++.++..++.++..+.+     ...|.   +++..++++.+.+++.
T Consensus       196 ~~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-----a~~g~---~s~~~illal~~~l~~  265 (375)
T PLN00012        196 FPIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISLPWWAGQ-----ALFGT---LTPDVVVLTLLYSIAG  265 (375)
T ss_pred             cHHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHH
Confidence            4556666778889999999  999999999999999888877655443222     22343   5667777778888899


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHH
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAV  131 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i  131 (182)
                      .++++.||+||+|+||+.|+||+|+++|+|++.+++..++.+..+..+
T Consensus       266 lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        266 LGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             HHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998766666655443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.81  E-value=1.5e-18  Score=148.55  Aligned_cols=121  Identities=22%  Similarity=0.288  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      +++.+...+++.+++++||  .||+++||++..+++.++..++.++..+.+...++      ...++..++.+.+.+++.
T Consensus       131 ~~~~~~l~l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~------~~~~~~~~l~~~~~~l~~  202 (314)
T PRK07566        131 GPWVFLAALLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGA------GLPSWPIVILALLYSLGA  202 (314)
T ss_pred             ChHHHHHHHHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHH
Confidence            4666777778888999999  99999999999999998888876655544432211      124566667777777889


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVL  132 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~  132 (182)
                      .+++..||+||+|+||+.|+||+|+++|+|++.+++..+...++++.+.
T Consensus       203 ~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~  251 (314)
T PRK07566        203 HGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA  251 (314)
T ss_pred             HHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888888777644

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.81  E-value=1.6e-18  Score=147.52  Aligned_cols=152  Identities=15%  Similarity=0.070  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCC-----ccchHHHHHHHHHHHHHHHHH
Q 044974           12 IAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRP-----MEITKPLMFASAFMTCLSVAI   86 (182)
Q Consensus        12 ~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~l~~~~~~~~~~~   86 (182)
                      ..+.++...|+      ..||+..++++.+++.++.....|...     +.|..     ...+.+++.+.....+|+.++
T Consensus       125 ~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~  193 (300)
T PRK13106        125 PIVALIAMSYP------YMKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGF  193 (300)
T ss_pred             HHHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            34455566787      579999999999888887654444322     12321     012334455556677899999


Q ss_pred             HHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044974           87 AFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDL  166 (182)
Q Consensus        87 ~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~  166 (182)
                      |++||+||+|+||+.|+||+|+++| |++.+++..++..+.+++...+...++   +..|+++..+....+.+||..+++
T Consensus       194 d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l---g~~y~~~~~~~~~~l~~~~~~~~~  269 (300)
T PRK13106        194 DLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL---GPIAIAATILHGLIMAYAYYLASK  269 (300)
T ss_pred             HHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999 999999999999999999888776655   467888888899999999999998


Q ss_pred             CChhHHHHHHHHh
Q 044974          167 SNNESIFSFYMFI  179 (182)
Q Consensus       167 ~~~~~~~~~y~~~  179 (182)
                      + .+--+.|.+-.
T Consensus       270 ~-~~~~~~F~~n~  281 (300)
T PRK13106        270 K-GDFGRAFYYNI  281 (300)
T ss_pred             c-hHHHHHHHHcc
Confidence            8 44556665443

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.81  E-value=1.2e-18  Score=147.43  Aligned_cols=117  Identities=23%  Similarity=0.309  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      ++..+.....+.+++++||  .||+|+|++|++++++. ..++.  +++..    ..+.|..  .++.. +  ....+|.
T Consensus       117 ~~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~-~~~g~--p~~~~----~~~~g~~--~~~~~-l--~a~~~w~  182 (292)
T PRK13595        117 PPAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSN-AAYAL--PLALP----ALALGAP--VPWPP-L--LALMAWS  182 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHH-HHHHH--HHHHH----HHHcCCc--chHHH-H--HHHHHHH
Confidence            4555666678889999999  99999999999999985 44442  22221    1233321  11222 2  3445688


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVG  134 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~  134 (182)
                      .++|++||+||+|+||+.|+||+|+++|+|++.+++..+.+++..+...+.
T Consensus       183 ~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~  233 (292)
T PRK13595        183 VGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS  233 (292)
T ss_pred             HHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998888877766543

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.80  E-value=5.7e-18  Score=142.74  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH
Q 044974            9 LGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAF   88 (182)
Q Consensus         9 ~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i   88 (182)
                      .....+.++...|+      .+||++..+++..+...+..+..| +.. +   .|. .......+.+.....+|+.+.++
T Consensus       109 ~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g-~~a-~---~g~-~~~~~~~~ll~~~~~~w~~~~~~  176 (282)
T TIGR01475       109 ILSPLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAG-WVA-V---IGT-ISFFLVAWLLGIGVGFWIAGFDL  176 (282)
T ss_pred             HHHHHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHH-HHH-H---hCC-ccchHHHHHHHHHHHHHHHHHHH
Confidence            33455666788898      579999899998888877543333 332 1   222 11114555667778889999999


Q ss_pred             HhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044974           89 VKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSN  168 (182)
Q Consensus        89 ~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~  168 (182)
                      +||.||+|+|++.|+||+|+++|+|++.+++...+.+++.+....+...+.   +..|+++..+....++++++.+|++|
T Consensus       177 i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~---g~~y~~~~~~~~~~l~~~~~~~~~~~  253 (282)
T TIGR01475       177 IYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGN---GYIALLALILIGLILAYEHYIVDPGD  253 (282)
T ss_pred             HHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhC---cHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999998888888776665444   45777788777888999999999999


Q ss_pred             hhHHHH
Q 044974          169 NESIFS  174 (182)
Q Consensus       169 ~~~~~~  174 (182)
                      ++++..
T Consensus       254 ~~~~~~  259 (282)
T TIGR01475       254 QSKIQR  259 (282)
T ss_pred             HHHHHH
Confidence            888765

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.80  E-value=4.5e-18  Score=142.85  Aligned_cols=155  Identities=19%  Similarity=0.264  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      |++.+....++.+.++.||     .++|++|+.++++++..++.....+...      .+.   .+.+.+.+....++|.
T Consensus       103 ~~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~~~~~~~~~~~~~~~~g~~~------~~~---~~~~~~~l~~~~~~~~  168 (279)
T PRK12884        103 SPLAFLVVILVSVLGILYN-----WKLKEYGLIGNLYVAFLTGMTFIFGGIA------VGE---LNEAVILLAAMAFLMT  168 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHH-----HhhccccchhHHHHHHHHHHHHHHHHHH------hCC---CchHHHHHHHHHHHHH
Confidence            4666666778888999999     4799999889999888877443333221      121   1225556667777889


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-h
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA-R  162 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  162 (182)
                      .+.++.||+||+|+||++|+||+|+++|+|++.+++...+...++..+........   ...|.+...+....+++++ +
T Consensus       169 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~  245 (279)
T PRK12884        169 LGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIF---NILYLAPVLVADLIFLYSAYS  245 (279)
T ss_pred             HHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888888766554443222   3567777777777888887 6


Q ss_pred             hcCCCChhHHHHH
Q 044974          163 NVDLSNNESIFSF  175 (182)
Q Consensus       163 ~v~~~~~~~~~~~  175 (182)
                      ..|++|++..+++
T Consensus       246 ~~~~~~~~~~~~~  258 (279)
T PRK12884        246 LLRSQDRETIRKV  258 (279)
T ss_pred             HhcCCCHHHHHHH
Confidence            6777776665554

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.79  E-value=3.7e-18  Score=144.24  Aligned_cols=127  Identities=20%  Similarity=0.211  Sum_probs=111.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            3 QSPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         3 ~~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      ++|.++..+.+|.+.|+.|+  .+|.++.+.| +|++.+++++|.+.+.+.++ .|+.      .+++..+..++++.+.
T Consensus       119 s~~~~l~lG~l~~~~g~~YT--gGp~PlgY~g-LGEi~~~vffG~l~v~g~~y-iqt~------~~~~~~ll~slp~gil  188 (303)
T COG1575         119 SDWLVLLLGLLCIAAGILYT--GGPFPLGYMG-LGEIFVGVFFGPLIVLGAYY-IQTG------RLSWAILLPSLPVGIL  188 (303)
T ss_pred             hhhHHHHHHHHHHHheeeec--cCCcCcccCC-HHHHHHHHHHHHHHHHHHHH-Hhcc------cchHHHHHHHHHHHHH
Confidence            45777888899999999999  9999999999 89999999999888877765 3542      3567788889999999


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSF  139 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~  139 (182)
                      +..+...||+||+|.|+|.|++|+|+|+|+|+++.+...++..++++.++.......
T Consensus       189 ~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~  245 (303)
T COG1575         189 IANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLF  245 (303)
T ss_pred             HHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998875554443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.79  E-value=1e-17  Score=142.00  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHH
Q 044974            6 PLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMF-ASAFMTCLSV   84 (182)
Q Consensus         6 ~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~-l~~~~~~~~~   84 (182)
                      ..+....++.+....|+      ..||++...++..++.++..+. ..|.    .+.|.   .++.... +.....+|..
T Consensus       115 ~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~l-~g~~----av~g~---~~~~~~~~l~~~~~~W~~  180 (289)
T PLN02809        115 YSRILGASSLLLVFTYP------LMKRFTFWPQAFLGLTFNWGAL-LGWA----AVKGS---LDPAVVLPLYASGVCWTL  180 (289)
T ss_pred             HHHHHHHHHHHHHHHHh------HHHhcCcchHHHHHHHHHHHHH-HHHH----HHhCC---CChHHHHHHHHHHHHHHH
Confidence            34444556777788898      4899998999887777664333 3333    22332   2333332 5566677899


Q ss_pred             HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974           85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV  164 (182)
Q Consensus        85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v  164 (182)
                      +.|++++.||+|+||+.|+||+|+++|+|+..+++ .++..++......+...+.   +..+++++.+.+..+++||+.+
T Consensus       181 ~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~---~~~~~~~~~~~~~~l~~~~~~v  256 (289)
T PLN02809        181 VYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGL---GWPYYAGLAAAAGHLAWQIQTV  256 (289)
T ss_pred             HHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999777766 5777777777777766554   3566778999999999999999


Q ss_pred             CCCChhHHHHHH
Q 044974          165 DLSNNESIFSFY  176 (182)
Q Consensus       165 ~~~~~~~~~~~y  176 (182)
                      |++|++++.+.+
T Consensus       257 ~~~~~~~~~~~F  268 (289)
T PLN02809        257 DLSSRADCNRKF  268 (289)
T ss_pred             CCCCHHHHHHHH
Confidence            999999886654

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.78  E-value=2.4e-17  Score=140.07  Aligned_cols=153  Identities=17%  Similarity=0.198  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchH----HHHHHHHHHHHHHHH
Q 044974           10 GVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITK----PLMFASAFMTCLSVA   85 (182)
Q Consensus        10 ~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~----~~~~l~~~~~~~~~~   85 (182)
                      ...+++++...|+      .+||+....++..++..+. .+++.|..    +.|.+  .++    ..++....+++|+.+
T Consensus       121 l~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~-~~l~~~~A----v~~~~--~~~~l~~~~~lw~~~~~~~~~g  187 (300)
T PRK12876        121 LAVLSTLLMIIYP------YTKRVTFLCHWILGLVYYL-AILMNFFA----IIETP--LSFSLFCMASLWGISFGMIIAA  187 (300)
T ss_pred             HHHHHHHHHHHHH------hHhcCCchhHHHHHHHHHH-HHHHHHHH----HhcCc--ccHHHHHHHHHHHHHHHHHHHH
Confidence            3445666667888      5899988888877777664 33344432    22221  222    334556677888999


Q ss_pred             HHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHH-hh
Q 044974           86 IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFL-WHRA-RN  163 (182)
Q Consensus        86 ~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-~~  163 (182)
                      +|++|++||+|+||+.|+||+|+++|+|++.+++..++.++.++.+..+...+.+  ...|+.+..+.+..+ .+|| +.
T Consensus       188 ~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~--~~~y~~~~~~~~~~l~~~~~~~~  265 (300)
T PRK12876        188 NDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNK--KIFYLCSLVPLTVILKTIKHYSL  265 (300)
T ss_pred             HHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888877766554  244666666555555 7888 77


Q ss_pred             cCCCChhHHHHHHH
Q 044974          164 VDLSNNESIFSFYM  177 (182)
Q Consensus       164 v~~~~~~~~~~~y~  177 (182)
                      +|.++++....|++
T Consensus       266 ~~~~~~~~~~~~F~  279 (300)
T PRK12876        266 IDKKKSTLEQKFFL  279 (300)
T ss_pred             cCCCchHHHHHHHH
Confidence            76666777777665

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.77  E-value=2.8e-17  Score=138.98  Aligned_cols=157  Identities=23%  Similarity=0.332  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974            5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV   84 (182)
Q Consensus         5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   84 (182)
                      +..+.....++++.+.|.      ++||.+.+++.+++..++.....|...     ..|.   .+.+.+++.++..+|+.
T Consensus       116 ~~~~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~~---~~~~~~~l~~~~~l~~~  181 (289)
T COG0382         116 PLAFLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAA-----VGGS---LPLLAWLLLLAAILWTL  181 (289)
T ss_pred             HHHHHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHH-----HhCc---cchHHHHHHHHHHHHHH
Confidence            334566678888999996      899999999999999988655544322     2222   35667778888899999


Q ss_pred             HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974           85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV  164 (182)
Q Consensus        85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v  164 (182)
                      ++|++||.||+|+||+.|+||+|+++|+|++..++...+ ...+.....+......  ...+..++......+++|+..+
T Consensus       182 ~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  258 (289)
T COG0382         182 GYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIV  258 (289)
T ss_pred             HHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999 4444444444433322  2588899999999999999999


Q ss_pred             CCCChhHHHHHHHH
Q 044974          165 DLSNNESIFSFYMF  178 (182)
Q Consensus       165 ~~~~~~~~~~~y~~  178 (182)
                      +++|++..+.++..
T Consensus       259 ~~~~~~~~~~~~~~  272 (289)
T COG0382         259 DVRDPPACFALFDV  272 (289)
T ss_pred             cccChHHHHHHHHH
Confidence            99998888887764

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.77  E-value=4.1e-17  Score=137.08  Aligned_cols=157  Identities=21%  Similarity=0.247  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974            5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV   84 (182)
Q Consensus         5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   84 (182)
                      +..+....++.++++.||     .|+|++|.++|+.++...|....+|...      .+.  ....+.+.+....+++..
T Consensus       105 ~~~~~~~~~~~~~~~~Yt-----~~lK~~~~~g~~~vg~~~g~~~~~g~~~------~~~--~~~~~~~~l~~~~fl~~~  171 (276)
T PRK12882        105 PLCLAIALFNSLLLVLYA-----ETLKGTPGLGNASVAYLTGSTFLFGGAA------VGT--EGLLALLVLFALAALATL  171 (276)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHHHHHH------hcc--cchHHHHHHHHHHHHHHH
Confidence            445555677778899999     4999999999998877776443333221      121  012233444556667788


Q ss_pred             HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHhh
Q 044974           85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLW-HRARN  163 (182)
Q Consensus        85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~  163 (182)
                      ++|++||+||+|+||+.|+||+|+++|+|++.+++...+....+...........   +..|++...+....+. +.-+.
T Consensus       172 ~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~  248 (276)
T PRK12882        172 AREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTF---GLWYLVLVAPADLVMLAAAYRS  248 (276)
T ss_pred             HHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888887777666543222222   3455555555544433 45556


Q ss_pred             cCCCChhHHHHHHH
Q 044974          164 VDLSNNESIFSFYM  177 (182)
Q Consensus       164 v~~~~~~~~~~~y~  177 (182)
                      .|.+|.+.+...+.
T Consensus       249 ~~~~~~~~~~~~f~  262 (276)
T PRK12882        249 LKKTDPTASQKLLK  262 (276)
T ss_pred             HcCCCHHHHHHHHH
Confidence            66777766655443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.75  E-value=8.6e-17  Score=135.72  Aligned_cols=156  Identities=15%  Similarity=0.212  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      ++..+....++.++.+.|+      ..||+...+++..++.++.....| |..    ..|.   .+++.+.+.....+|.
T Consensus       108 ~~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g-~~a----~~g~---~~~~~~ll~~~~~lw~  173 (281)
T TIGR01474       108 NPLTILLGVASLALVATYP------FMKRITYWPQLVLGLAFGWGALMG-WAA----VTGD---LSTAAWVLYLANILWT  173 (281)
T ss_pred             hHHHHHHHHHHHHHHHHhc------hhcccccccHHHHHHHHHHHHHHH-HHH----HcCC---CcHHHHHHHHHHHHHH
Confidence            4556666778888899998      489988888888777776544444 331    2232   4555555667778899


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN  163 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  163 (182)
                      .+.+.+|++||+|+||++|+||+|+++|+|++.. ...++.++.......+.....   +..|+++..+....+.+++.+
T Consensus       174 ~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~  249 (281)
T TIGR01474       174 LGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPW-LGGLYALMILLLALAGLIAGL---GPVYYLGLAAAALLLIRQIAT  249 (281)
T ss_pred             HHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHH-HHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988644 445555555544444444333   456778888889999999999


Q ss_pred             cCCCChhHHHHHHH
Q 044974          164 VDLSNNESIFSFYM  177 (182)
Q Consensus       164 v~~~~~~~~~~~y~  177 (182)
                      +|++|++++++++.
T Consensus       250 ~~~~~~~~~~~~F~  263 (281)
T TIGR01474       250 LDIRDPENCLKLFK  263 (281)
T ss_pred             hCCCCHHHHHHHHH
Confidence            99888877766554

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.75  E-value=1.2e-16  Score=135.48  Aligned_cols=153  Identities=19%  Similarity=0.201  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974            5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV   84 (182)
Q Consensus         5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   84 (182)
                      ++.+....++.+....|+      ..||++..+++..++..+.. +++.|.. +   .|.   .+.+.+.+...+.+|..
T Consensus       111 ~~~~~l~~~~~~~~~~Y~------~~Kr~t~~~~~~~g~~~~~~-~l~g~~a-~---~g~---~~~~~~ll~~~~~lw~~  176 (291)
T PRK12886        111 PLCLYLSPPALFFLLLYS------YCKRFTALAHVVLGFCLALA-PLGAWIA-I---RGT---IELPAILLGLAVLFWVA  176 (291)
T ss_pred             HHHHHHHHHHHHHHHHHh------hhhccccccHHHHHHHHHHH-HHHHHHH-H---cCC---CcHHHHHHHHHHHHHHH
Confidence            444444555666788899      47999989998888876644 4444542 2   232   45666677777888999


Q ss_pred             HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974           85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV  164 (182)
Q Consensus        85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v  164 (182)
                      +.|++|++||.|+||+.|+||+|+++|+|++.++....+...+.+++..+.....   +..|.++..+....+.++++..
T Consensus       177 ~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~  253 (291)
T PRK12886        177 GFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL---GPWFLAGLAVTGILLLYEHWLL  253 (291)
T ss_pred             HHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988888888877776665444   4567777777777777999999


Q ss_pred             CCCCh-hHHHH
Q 044974          165 DLSNN-ESIFS  174 (182)
Q Consensus       165 ~~~~~-~~~~~  174 (182)
                      +++|+ ++.++
T Consensus       254 ~~~~~~~~~~~  264 (291)
T PRK12886        254 RGGDLTRLDAA  264 (291)
T ss_pred             CCCChhHHHHH
Confidence            98884 46666

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.75  E-value=4.3e-17  Score=138.60  Aligned_cols=118  Identities=21%  Similarity=0.122  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhcC--CCc--hhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHH
Q 044974           10 GVIAWLFISTAYSAQ--LPF--LRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVA   85 (182)
Q Consensus        10 ~~~~~~~lg~~YS~~--~pP--~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~   85 (182)
                      ..+++.+.++.||.+  .+|  +|+|+.|..||+.++..||.....+...    . .+.    ..+.....++......+
T Consensus       124 l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~----~-~~~----~~~~~~i~l~~~~~l~~  194 (307)
T PRK13591        124 LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGS----Y-CGS----LIPVGLIFLFFGVKLFI  194 (307)
T ss_pred             HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHh----h-hhh----HHHHHHHHHHHHHHHHH
Confidence            457888899999932  124  5899999999999999998643221111    0 010    11222223333334578


Q ss_pred             HHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           86 IAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGAS  136 (182)
Q Consensus        86 ~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~  136 (182)
                      ++++||++|+||||++|+||+|+++|+|+|.++...++..++++.+.....
T Consensus       195 ~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~  245 (307)
T PRK13591        195 NSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF  245 (307)
T ss_pred             HHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999888765443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.74  E-value=1.5e-16  Score=134.36  Aligned_cols=154  Identities=9%  Similarity=0.094  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      ++..+....++.++...|+      ..||+...+++..++.++.. +++.|.. +   .|.   .+++.+++.....+|+
T Consensus       113 ~~~~~~~~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~-~l~~~~a-~---~g~---~~~~~~~l~~~~~~w~  178 (285)
T PRK12847        113 NKTTIYLSFIAVILIVLYP------LMKRFFYWPQLFLGFTFNMG-ILMAFAA-V---QNQ---LDIEAILLYIGCIFWT  178 (285)
T ss_pred             hHHHHHHHHHHHHHHHhcc------ccccCCcccHHHHHHHHHHH-HHHHHHH-H---cCC---CcHHHHHHHHHHHHHH
Confidence            4566667778888899998      36777777788777777643 3333332 2   232   4567777788888999


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN  163 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  163 (182)
                      .+.+.+|++||+|+|+++|+||+|+++|+|++.+++.......+++.+. +...+.   ...++.++++....+.+++..
T Consensus       179 ~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~---~~~~y~~~~~~~~~l~~~~~~  254 (285)
T PRK12847        179 IGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSL---HNIFYLAILAAAGIFYYQYKL  254 (285)
T ss_pred             HHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcC---cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776666655543 333232   234445666667789999999


Q ss_pred             cCCCChhHHHHH
Q 044974          164 VDLSNNESIFSF  175 (182)
Q Consensus       164 v~~~~~~~~~~~  175 (182)
                      +|++|++++...
T Consensus       255 ~~~~~~~~~~~~  266 (285)
T PRK12847        255 LDFDNPANCMYA  266 (285)
T ss_pred             hCCCCHHHHHHH
Confidence            999987766544

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.74  E-value=2.3e-16  Score=133.79  Aligned_cols=148  Identities=20%  Similarity=0.235  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 044974           12 IAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKD   91 (182)
Q Consensus        12 ~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~d   91 (182)
                      ....+....|+      .+||+...+++..++..+..+..| +..    +.|.   .+.+.+++...+++|..++|.+|+
T Consensus       123 ~~~~~~~~~Y~------~~KR~t~~~~~~~g~~~~~~~l~G-~~a----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a  188 (291)
T PRK12874        123 FPFLIVLGGYS------YFKRFSSLAHLVLGLSLGLAPIAG-VVA----VLGE---IPLWSVFLALGVMFWVAGFDLLYS  188 (291)
T ss_pred             HHHHHHHHHHh------hhcccccccHHHHHHHHHHHHHHH-HHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555677888      479999899998888877544444 432    2232   445556667778899999999999


Q ss_pred             cCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhH
Q 044974           92 LHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNES  171 (182)
Q Consensus        92 i~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~  171 (182)
                      +||+|+||+.|+||+|+++|+|++.+.....+....+.....+.....   ..+++++..+.+..+.+||+.++.+|+++
T Consensus       189 ~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (291)
T PRK12874        189 LQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDFKKI  265 (291)
T ss_pred             hccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            999999999999999999999999998888777666665555444333   35667788888899999999998777777


Q ss_pred             HHHHH
Q 044974          172 IFSFY  176 (182)
Q Consensus       172 ~~~~y  176 (182)
                      .+.|+
T Consensus       266 ~~~ff  270 (291)
T PRK12874        266 DKAFF  270 (291)
T ss_pred             HHHHH
Confidence            77753

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.73  E-value=1e-16  Score=135.88  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHH
Q 044974            8 VLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIA   87 (182)
Q Consensus         8 ~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~   87 (182)
                      +.....+.+....|+      -.||+...+++..++.++.. +++.|..    ..|.   .+++.+.+...+++|..++|
T Consensus       118 ~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~-~l~g~~a----~~g~---~~~~~~~l~~~~~lw~~~~d  183 (290)
T PRK12870        118 FWLCVAAVPVIFLYP------LAKRVFPVPQLVLAIAWGFA-VLISWSA----VTGH---LDLGTWLLWAATVFWTLGFD  183 (290)
T ss_pred             HHHHHHHHHHHHHhh------hhhhccccceeeehHHHHhH-HHHHHHH----HcCC---CCHHHHHHHHHHHHHHHHHH
Confidence            334455666778887      25777667787777777743 3444432    1232   45666677778889999999


Q ss_pred             HHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc--C
Q 044974           88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV--D  165 (182)
Q Consensus        88 i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v--~  165 (182)
                      ++|++||+|+|+++|+||+|+++|+|++.+++. ++.+.......++...+.   +..|+++..+....+.+||.++  |
T Consensus       184 ~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~---~~~y~~~~~~~~~~l~~~~~~~~~~  259 (290)
T PRK12870        184 TVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLEL---HLPFWIGLAIAAVLWARQYRRLRQA  259 (290)
T ss_pred             HHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999998776 566666555566665554   3567778888889999999999  5


Q ss_pred             CCChhHHHHHH
Q 044974          166 LSNNESIFSFY  176 (182)
Q Consensus       166 ~~~~~~~~~~y  176 (182)
                      .+|++++.+|+
T Consensus       260 ~~~~~~~~~~F  270 (290)
T PRK12870        260 NLPPLAYGQLF  270 (290)
T ss_pred             CCChHHHHHHH
Confidence            55666665554

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.73  E-value=1.2e-16  Score=134.96  Aligned_cols=115  Identities=24%  Similarity=0.342  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHH
Q 044974            8 VLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIA   87 (182)
Q Consensus         8 ~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~   87 (182)
                      ...++..++++++||  .||+|+|++|+.+..+.+. + .....+.|+ .|+   |.   .++..++.+  ..+|+.+++
T Consensus       116 ~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g~-~-~~~~~~~y~-~~t---g~---~~~~~l~~a--~~l~~~~~~  182 (282)
T PRK12875        116 WPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNGL-Y-ILPGVAAYA-LVS---GS---LPPLLAVAG--GWLWAMGMH  182 (282)
T ss_pred             HHHHHHHHHHHHHHc--CCCccchhccHHHHHHHHH-H-HHHHHHHHH-HHc---CC---CcHHHHHHH--HHHHHHHHH
Confidence            334456788999999  9999999999876554232 2 233334443 222   21   333333333  357899999


Q ss_pred             HHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           88 FVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGA  135 (182)
Q Consensus        88 i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~  135 (182)
                      ++||+||+|+||+.|+||+|+++|+|++++++..+++++..+.+.++.
T Consensus       183 ~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~  230 (282)
T PRK12875        183 TFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL  230 (282)
T ss_pred             HHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988887654

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.73  E-value=2.7e-16  Score=132.32  Aligned_cols=150  Identities=15%  Similarity=0.100  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      ++..+....++.++.+.||     .++||++.++|+.++...|.....|... .+    +     ....+.+....++|.
T Consensus       103 ~~~~~~l~~~~~~~~~~Ys-----~~lKr~~~~~~~~vg~~~G~~~~~g~~~-~~----~-----~~~~~~l~~~~f~~~  167 (279)
T PRK09573        103 NIYAFLIALLNSILLYLYA-----KDLKKTGLIGNLIVAYLTGLSFIFGGLA-VF----N-----VLRIIILFLCAFFST  167 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHHHHHHHH-Hc----c-----chHHHHHHHHHHHHH
Confidence            4555566677888899999     3789999899999999988765544432 21    1     123344455666788


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR-  162 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  162 (182)
                      .++++.||.||+|+||++|+||+|+++|+|++.+++...+...............   .+..|.++..+....+.+++. 
T Consensus       168 ~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~~~~~~~~~~l~~~~~  244 (279)
T PRK09573        168 WSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGI---FGIYYLIVVIICDILFIIAMLI  244 (279)
T ss_pred             HHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHH
Confidence            8999999999999999999999999999999999988887777776654333221   245677666666666666633 


Q ss_pred             hcCCCChhH
Q 044974          163 NVDLSNNES  171 (182)
Q Consensus       163 ~v~~~~~~~  171 (182)
                      ..+.+|+++
T Consensus       245 ~~~~~~~~~  253 (279)
T PRK09573        245 LLKNPSIEG  253 (279)
T ss_pred             HHcCCCHHH
Confidence            444444443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.72  E-value=2.9e-16  Score=128.78  Aligned_cols=157  Identities=23%  Similarity=0.307  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      +++.+....++.+.+.+||   ||.|+|++|+.+++++++.++.....+.+.      .+.  ..+.+....+.+..++.
T Consensus        91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~  159 (257)
T PF01040_consen   91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLI  159 (257)
T ss_pred             CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHH
Confidence            4666777778888889999   888999999989999988887555544433      111  12455566666667788


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN  163 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  163 (182)
                      ..+...+|++|+|+||+.|+||+|+++|+|++..  ..+....+.. .........   ...........+..+...++.
T Consensus       160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~  233 (257)
T PF01040_consen  160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLLGLFS---PWPLIIALLLAALALIFILWF  233 (257)
T ss_pred             HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999998  1122222211 111111111   233444444555556665655


Q ss_pred             cCCCChhHHHHHHH
Q 044974          164 VDLSNNESIFSFYM  177 (182)
Q Consensus       164 v~~~~~~~~~~~y~  177 (182)
                      .+.+++++.+..++
T Consensus       234 ~~~~~~~~~~~~~~  247 (257)
T PF01040_consen  234 FRKRDPKKPERLFF  247 (257)
T ss_pred             HhcCCcchHHHHHH
Confidence            55555555444443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.71  E-value=8e-16  Score=129.83  Aligned_cols=152  Identities=13%  Similarity=0.098  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 044974            5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSV   84 (182)
Q Consensus         5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   84 (182)
                      +..+....++.++.+.|+      ..||+...+++..++..+.....+ |.. +   .|.   .+.+.+.+.....+|..
T Consensus       111 ~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~g~~~~~g-~~a-~---~~~---~~~~~~~l~~~~~~w~~  176 (282)
T PRK12848        111 TLTIWLSVAALALAWIYP------FMKRYTHLPQVVLGAAFGWGIPMA-FAA-V---QGS---VPLEAWLLFLANILWTV  176 (282)
T ss_pred             HHHHHHHHHHHHHHHHHH------hHHhcCcccHHHHHHHHHHHHHHH-HHH-H---hCC---CcHHHHHHHHHHHHHHH
Confidence            334444566777788886      357777677887777777544433 321 2   222   45666677777888999


Q ss_pred             HHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 044974           85 AIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNV  164 (182)
Q Consensus        85 ~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v  164 (182)
                      +.+..|++||.|+||++|+||+|+++|+|++.+.. .++.+........+...+.   +..|+++..+....+.+|+..+
T Consensus       177 ~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~  252 (282)
T PRK12848        177 AYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLI  252 (282)
T ss_pred             HHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999998877 4455554444444444333   4567788888889999999999


Q ss_pred             CCCChhHHHH
Q 044974          165 DLSNNESIFS  174 (182)
Q Consensus       165 ~~~~~~~~~~  174 (182)
                      |++|++++.+
T Consensus       253 ~~~~~~~~~~  262 (282)
T PRK12848        253 RDREREACFK  262 (282)
T ss_pred             CCCCHHHHHH
Confidence            9998776644

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.70  E-value=1.3e-15  Score=130.56  Aligned_cols=156  Identities=14%  Similarity=0.146  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      +++.+....++.++.+.|+      ..||+....+...++..+.....+ |+. +   .|.   ++++.+.+.....+|.
T Consensus       140 ~~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~~Gl~~~~~~l~g-~~a-~---~g~---~~~~~~~l~~~~~~w~  205 (314)
T PRK12878        140 NWFAIALGIASLAIVAAYP------FMKRITWWPQFFLGLAFSWGALMG-WAA-H---FGS---LSLAAVLLYAGSIAWT  205 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHH------HHHhcCCcchHHHHHHHHHHHHHH-HHH-H---hCC---CchHHHHHHHHHHHHH
Confidence            5666777778888899998      478766555655555554333333 332 2   232   4556666667778899


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN  163 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  163 (182)
                      .+.+.++++||+|+||++|+||+|+++|+|++.+++.... .........+...+.   +..|+++.......+.+|+.+
T Consensus       206 ~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~  281 (314)
T PRK12878        206 IGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGV---PLLALLGLLAAAAHLAWQIAR  281 (314)
T ss_pred             HHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH-HHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999884444 433333333333333   345666666666678899999


Q ss_pred             cCCCChhHHHHHHH
Q 044974          164 VDLSNNESIFSFYM  177 (182)
Q Consensus       164 v~~~~~~~~~~~y~  177 (182)
                      +|++|+++.+.++.
T Consensus       282 ~~~~~~~~~~~~F~  295 (314)
T PRK12878        282 LDIDDPDQCLRLFK  295 (314)
T ss_pred             cccCChHHHHHHHH
Confidence            99888877766654

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.69  E-value=1.6e-15  Score=128.83  Aligned_cols=153  Identities=11%  Similarity=0.001  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh
Q 044974           12 IAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKD   91 (182)
Q Consensus        12 ~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~d   91 (182)
                      .++++....|+      -.||+....++..++..+ ..++..|..    +.|. .......+++...+.+|..+.|++++
T Consensus       124 ~~~~~~~~~Y~------~~KR~t~~~~~vlg~~~a-~~~l~gw~A----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA  191 (294)
T PRK12873        124 FLALPPILIYP------SAKRWFAYPQAILALCWG-FAVLIPWAA----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYA  191 (294)
T ss_pred             HHHHHHHHHHH------HHHhccccchHHHHHHHH-hHHHHHHHH----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566777      367766666776666555 333333432    2232 11112344445677889999999999


Q ss_pred             cCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCh--
Q 044974           92 LHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNN--  169 (182)
Q Consensus        92 i~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~--  169 (182)
                      +||.|.|++.|++|+|+++|+ ++..+...++.+..+++...+...++   +..|+++..+.+..+.+||+.+|++|+  
T Consensus       192 ~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l---~~~y~~~~~~~~~~l~~~~~~~~~~~~~~  267 (294)
T PRK12873        192 MADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQV---GFIFWPFWLIASIGMQRDILKLFPEKQSI  267 (294)
T ss_pred             HHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCcCcccH
Confidence            999999999999999999996 67777889999999888888887666   467888998899999999999999883  


Q ss_pred             hHH-HHHHHHhh
Q 044974          170 ESI-FSFYMFIW  180 (182)
Q Consensus       170 ~~~-~~~y~~~w  180 (182)
                      +++ +.|.+-.|
T Consensus       268 ~~c~~~F~~n~~  279 (294)
T PRK12873        268 KTIGNHFSNQVI  279 (294)
T ss_pred             HHHHHHHHhccH
Confidence            555 55655443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.65  E-value=9.5e-15  Score=122.81  Aligned_cols=147  Identities=18%  Similarity=0.237  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      |++.+.....+.++++.|+     .++|+++.++|..++...|..+..|...     . +.   .++..+. ..+.+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~Y~-----~~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~~---~~~~~~~-~~~~fl~~  167 (277)
T PRK12883        103 NIEAFLFALGAYVLMFLYA-----WKLKPLPFIGNVVVALLTGATPIYGAIA-----V-GR---IGLAGYL-AICAFLVN  167 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----hcccCCcchhhHHHHHHHHHHHHHHHHH-----h-cc---ccHHHHH-HHHHHHHH
Confidence            4666666677788899999     3789988889999888888665444321     1 21   2333222 23345566


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARN  163 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  163 (182)
                      .++++.||+||+|+||++|+||+|+++|+|++.++.................. ..   +..|.....+.+.++..+.+.
T Consensus       168 ~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~-~~---~~~y~~~~~~~~~~l~~~~~~  243 (277)
T PRK12883        168 VAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKA-GI---GLGYLPIIIVDAIILYAAYLV  243 (277)
T ss_pred             HHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHH-cc---cHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999998766654444333221111 11   123333333334444455555


Q ss_pred             cCCCCh
Q 044974          164 VDLSNN  169 (182)
Q Consensus       164 v~~~~~  169 (182)
                      .+.+|+
T Consensus       244 ~~~~~~  249 (277)
T PRK12883        244 LRNPDR  249 (277)
T ss_pred             HhCcch
Confidence            554444

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.60  E-value=8.3e-14  Score=117.33  Aligned_cols=159  Identities=14%  Similarity=0.095  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHH-HHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFI-STAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCL   82 (182)
Q Consensus         4 ~~~l~~~~~~~~~l-g~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   82 (182)
                      +++......++.++ .+.||  .   .+||++.. +..++...+...+++.|+. +   .|.   .+++.+.+...+.+|
T Consensus       104 ~~~~~~l~~~~~~~~~~~Yt--~---~lKr~~~~-~~~v~~~~g~~~~l~g~~a-~---~g~---~~~~~~~l~~~~~~w  170 (280)
T TIGR01473       104 NPLAALLGLFGIFFYVIVYT--I---WLKRRTPQ-NTVIGGFAGAVPPLIGWAA-V---TGS---ISLGAWLLFAIIFLW  170 (280)
T ss_pred             hHHHHHHHHHHHHHHHhhcC--h---hhccCCch-hHHHHHHHHHHHHHHHHHH-h---cCC---CCHHHHHHHHHHHHH
Confidence            34444445566654 78898  3   67998865 4445556666666666552 2   222   456666667777888


Q ss_pred             HHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHH
Q 044974           83 SVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTI-IGHATLLLFLWHRA  161 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~  161 (182)
                      ....+...+.+|.|.||+.|+||+|+++|+|++.+.....+..........+.....   +..|+ ++..+....+.+++
T Consensus       171 ~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~  247 (280)
T TIGR01473       171 QPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGT---GWLYLIVATLLGALFLYLAF  247 (280)
T ss_pred             HHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHH
Confidence            888877888999999999999999999999999998887777766666555444333   34555 56666678888999


Q ss_pred             hhcCCC-Chh-HHHHHHHH
Q 044974          162 RNVDLS-NNE-SIFSFYMF  178 (182)
Q Consensus       162 ~~v~~~-~~~-~~~~~y~~  178 (182)
                      +..|++ |++ +-+.|..-
T Consensus       248 ~~~~~~~~~~~~~~~f~~s  266 (280)
T TIGR01473       248 KFYRDPTDRKKARKLFKFS  266 (280)
T ss_pred             HHhcCCCcHHHHHHHHHHH
Confidence            999887 654 44555543

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.56  E-value=3.5e-13  Score=113.67  Aligned_cols=151  Identities=15%  Similarity=0.162  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhc
Q 044974           13 AWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDL   92 (182)
Q Consensus        13 ~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di   92 (182)
                      ...+....||     .++||++.. +..++...|...+++.|.. ++   |   ..+++.+.+...+++|..+....++.
T Consensus       115 ~~~~~~~~Yt-----~~lKr~~~~-~~~v~~~~g~~~~l~g~~a-~~---g---~~~~~~~ll~~~~~~w~~~~~~~l~~  181 (279)
T PRK12869        115 GWFFYAVVYT-----IWLKPRTWL-NIVIGGFAGNAAALAGYAS-GT---G---SLDLEAVLLSFLIYLWTPGHIWSLAL  181 (279)
T ss_pred             HHHHHHhhhC-----cccccCChH-HHHHHHHHHHHHHHHHHHH-Hh---C---CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667888     479999964 6666666666666776653 22   2   24667777788888899999888899


Q ss_pred             CChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-Hhhc-CCCChh
Q 044974           93 HDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHR-ARNV-DLSNNE  170 (182)
Q Consensus        93 ~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~v-~~~~~~  170 (182)
                      +|.|.|+++|+||+|+++|+|++.+.....+......+...+. ...   +..|.++..+....++++ .+.. ++++++
T Consensus       182 ~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~---g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~  257 (279)
T PRK12869        182 KYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYI---GLIGLILVAILSAALMATSIRALLNPTKEE  257 (279)
T ss_pred             HhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cHHHHHHHHHHHHHHHHHHHHHhhCCChHH
Confidence            9999999999999999999999999888877776665554443 222   456776666555555544 3334 444445


Q ss_pred             HHHHHHHHhh
Q 044974          171 SIFSFYMFIW  180 (182)
Q Consensus       171 ~~~~~y~~~w  180 (182)
                      ..+.|..-+|
T Consensus       258 ~~~~f~~s~~  267 (279)
T PRK12869        258 AWKMFKASSP  267 (279)
T ss_pred             HHHHHHHHHH
Confidence            5555655443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.53  E-value=5e-13  Score=113.61  Aligned_cols=147  Identities=12%  Similarity=0.057  Sum_probs=104.3

Q ss_pred             HHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChH
Q 044974           17 ISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVE   96 (182)
Q Consensus        17 lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~e   96 (182)
                      ....|+     .++||++ .++..++...+...++..++. +   .|.   ++++.+++.+.+++|..+.+..++++|.|
T Consensus       127 ~~~~Ys-----~~lKr~~-~~~~~v~~~~g~~~~l~g~~a-~---~g~---~~~~~~~l~~~~~lw~~~~~~~~~~~d~~  193 (296)
T PRK04375        127 YVVVYT-----LWLKRRT-PQNIVIGGAAGAMPPLIGWAA-V---TGS---LSWEALILFLIIFLWTPPHFWALAIFRKD  193 (296)
T ss_pred             HHHHhc-----cchhcCC-ccchHHHHHHHHhHHHHHHHH-h---CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356788     3799999 567666666554555444442 1   222   46667777888889999999999999999


Q ss_pred             HHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHhhcCCCChhHH-HH
Q 044974           97 GDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTII-GHATLLLFLWHRARNVDLSNNESI-FS  174 (182)
Q Consensus        97 gDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~v~~~~~~~~-~~  174 (182)
                      .||++|+||+|+++|+|++.+.+...+.......+........   +..|.+ +..+....+.++++.+|++|++.+ +.
T Consensus       194 D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  270 (296)
T PRK04375        194 DYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMA---GLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKL  270 (296)
T ss_pred             hHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHH
Confidence            9999999999999999999998877777776665554443222   244554 455567777789999988876544 45


Q ss_pred             HHHHh
Q 044974          175 FYMFI  179 (182)
Q Consensus       175 ~y~~~  179 (182)
                      |+.-.
T Consensus       271 F~~s~  275 (296)
T PRK04375        271 FRYSI  275 (296)
T ss_pred             HHHHH
Confidence            55433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.53  E-value=7.1e-13  Score=112.85  Aligned_cols=148  Identities=13%  Similarity=0.077  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhhhhh---HHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 044974            5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNS---FLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTC   81 (182)
Q Consensus         5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p---~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~   81 (182)
                      +..+...+.+.++++.|+  ..|.. -..|   ..+++.    .+. .++..+.  +   .|.   .+...+....+..+
T Consensus       123 ~~~~~l~~~~~~~~~~Y~--~~kr~-~~~p~~~l~G~~~----~~~-~~~~g~~--~---~g~---~~~~~~ll~~~~~~  186 (297)
T PRK12871        123 LYVFVIMLYSYGIEAFYQ--VKKRN-QKYPVAQLLGRTD----FTL-FPAAGYL--C---YGQ---PDMTALLYMVFFYP  186 (297)
T ss_pred             HHHHHHHHHHHHHHHHHh--ccccc-ccccHHHHHHHHH----HHH-HHHHHHH--H---hCC---CcHHHHHHHHHHHH
Confidence            344555567777888888  53322 2246   223332    222 2222222  1   232   45556666788888


Q ss_pred             HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044974           82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRA  161 (182)
Q Consensus        82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  161 (182)
                      |..+++.+||++|+|+|++.|+||+|+++|++++.++...+..+..+..+  +...+.+  ...+.....+.+.++.++.
T Consensus       187 w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~~~g--~~~~~~~~~~~~~~~~~~~  262 (297)
T PRK12871        187 WTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLRELG--PIALYGFLAGFVLLAGANL  262 (297)
T ss_pred             HHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877666655554443  2222332  2334444466677788898


Q ss_pred             hhcCCCChhHH
Q 044974          162 RNVDLSNNESI  172 (182)
Q Consensus       162 ~~v~~~~~~~~  172 (182)
                      ++.+.+|++.+
T Consensus       263 ~~~~~~~~~~~  273 (297)
T PRK12871        263 YLWKEKSQDAG  273 (297)
T ss_pred             HHhcCCCHHHH
Confidence            98899988876

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.20  E-value=1.3e-09  Score=93.16  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=85.6

Q ss_pred             HHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChH
Q 044974           17 ISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVE   96 (182)
Q Consensus        17 lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~e   96 (182)
                      ....|+     .++||++..+++..++..+ .+++..|..    ..|.   .+...+.+...+++|..+.+...+++|.|
T Consensus       130 ~~~~Yt-----~~lKr~t~~~~~vgg~~ga-~p~l~G~~a----~~g~---~~~~~~~l~~~~~~W~~~h~~~~ai~~~~  196 (306)
T PRK13362        130 YVGVYS-----LYLKRNSVYGTLVGSLSGA-MPPVVGYCA----VTGQ---FDAGALILLLMFSLWQMPHSYAIAIFRFN  196 (306)
T ss_pred             HHHHHh-----HHHhccCcHhHHHHHHHHH-HHHHHHHHH----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            456788     4899999888886555544 444444432    1222   45667777888888999999999999999


Q ss_pred             HHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 044974           97 GDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRAR  162 (182)
Q Consensus        97 gDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  162 (182)
                      .|+++|+||+|+++|+|++.+.......+............   ..+..|.+...+....+++.+.
T Consensus       197 Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g---~~g~~y~~~~~~~~~~~l~~a~  259 (306)
T PRK13362        197 DYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAG---YTGIGYLAVAAATSLWWLAMAL  259 (306)
T ss_pred             hHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999865444444333333222221   1234555544444444444333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.17  E-value=9.6e-10  Score=93.31  Aligned_cols=114  Identities=11%  Similarity=0.141  Sum_probs=78.3

Q ss_pred             HHHHHHHHHH-----hcCCCchhhhhhhHHHHHHHHHHhhccchhH--HHHH-HHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974           12 IAWLFISTAY-----SAQLPFLRWKGNSFLAAVCMVFMCGLLPQVP--FFFH-VQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus        12 ~~~~~lg~~Y-----S~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~--~~~~-~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      +...+..+.|     +     -++|+.|+.+|+.++...+....++  .+.. +.....|.+ ......+.+.+..++..
T Consensus       115 i~~~~i~~lY~~lm~a-----~~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~  188 (299)
T PRK13592        115 VGWFLFLYIYGTLMSF-----WFFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPS  188 (299)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHH
Confidence            3445567888     7     4999999999999888777443222  1110 011112211 11111234455666678


Q ss_pred             HHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 044974           84 VAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLV  133 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~  133 (182)
                      .++|+.||+|| |+|++. .+|+|+++|+|+|.+++..+..++.+.+.+.
T Consensus       189 l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp  236 (299)
T PRK13592        189 LIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTNFAL  236 (299)
T ss_pred             HHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHhhHH
Confidence            99999999999 888865 9999999999999999999988888876643

>PLN02776 prenyltransferase

Probab=98.94  E-value=1.3e-07  Score=82.00  Aligned_cols=140  Identities=11%  Similarity=-0.014  Sum_probs=100.5

Q ss_pred             HHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChHH
Q 044974           18 STAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEG   97 (182)
Q Consensus        18 g~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~eg   97 (182)
                      ...|+      .+||+... +..++...|.++++..|..    +.|.   ++++.+++...+.+|...-.....++|.|.
T Consensus       113 ~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~A----vtg~---~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD  178 (341)
T PLN02776        113 AFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAA----ASGQ---LDAGAMVLAAALYFWQMPHFMALAYMCRDD  178 (341)
T ss_pred             HHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHH----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34677      58998866 4577888787777777763    2332   567777777778888886566667777789


Q ss_pred             HHHcCCcchhhh--hcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q 044974           98 DREHGIQTLSVM--LGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLWHRARNVDLSNNESIFS  174 (182)
Q Consensus        98 Dr~~G~~Tlpv~--lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~  174 (182)
                      |++.|++.+|+.  .|++.++.+....+.+..+..+...+....   ..+++++..+.+..+.++|+.++++|++..+.
T Consensus       179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~---~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~  254 (341)
T PLN02776        179 YAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTS---SPFALEAALLTAYLAASAASFYREPTNANARK  254 (341)
T ss_pred             HHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999999999985  478888888877777766665543332111   35677777777889999999998888766544

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=97.87  E-value=6.3e-05  Score=63.31  Aligned_cols=94  Identities=14%  Similarity=0.194  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 044974           79 MTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATLLLFLW  158 (182)
Q Consensus        79 ~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (182)
                      -.+|+..-|.+++=||-+.|.+.|+|+-+.|+|++.-.++ .++-......+...|+.+++.   +.|+.+++..+.=|.
T Consensus       233 ~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl-~gf~a~~ia~La~aG~~s~q~---~pyy~~lg~~~~~L~  308 (353)
T KOG1381|consen  233 GVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL-SGFGAAQIASLAAAGIASDQT---WPYYAALGAVAARLG  308 (353)
T ss_pred             hhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH-hhhhHHHHHHHHHhhhccCCC---chHHHHHHHHHHHHH
Confidence            3468889999999999999999999999999998766664 456666666666788888875   467777888888899


Q ss_pred             HHHhhcCCCChhHHHHHH
Q 044974          159 HRARNVDLSNNESIFSFY  176 (182)
Q Consensus       159 ~~~~~v~~~~~~~~~~~y  176 (182)
                      .+-..||-+|++.+...+
T Consensus       309 ~~i~~vdiDnp~dC~k~f  326 (353)
T KOG1381|consen  309 SQIYKVDIDNPSDCWKKF  326 (353)
T ss_pred             hheeeeecCChHHHHHHH
Confidence            999999999999887654

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.17  E-value=6e-05  Score=62.19  Aligned_cols=60  Identities=23%  Similarity=0.325  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASS  137 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~  137 (182)
                      ...+-.-++.--||.||.|.||+.|+-|+++.+|+..+-.++.-++...|.+..+.+.-.
T Consensus       237 plalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~  296 (359)
T KOG4581|consen  237 PLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHC  296 (359)
T ss_pred             eeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445677889999999999999999999999999999999999999998887766543

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.017  Score=49.53  Aligned_cols=141  Identities=13%  Similarity=0.100  Sum_probs=76.7

Q ss_pred             HHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCChHHH
Q 044974           19 TAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLSVAIAFVKDLHDVEGD   98 (182)
Q Consensus        19 ~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~i~~di~D~egD   98 (182)
                      ..||     ..+||+.. -|..++-+-|..+++..|+.    +.|.   .+++.+.+.+.+++|.--=--.=+++-.|.=
T Consensus       137 ~vYT-----~~lKR~T~-~NiviGg~aGa~PpliGwaA----vtg~---~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY  203 (304)
T COG0109         137 VVYT-----LWLKRRTP-QNIVIGGFAGAMPPLIGWAA----VTGS---ISLGAILLFAIIFLWTPPHFWALALKYKDDY  203 (304)
T ss_pred             hhhh-----hhccCCcc-cceeeeeccccccccceeee----eeCC---CCchHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5677     47899884 35555666666777666652    2333   4555555555555442211111112223344


Q ss_pred             HHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHhhcCCCC-hhHHHHH
Q 044974           99 REHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATL-LLFLWHRARNVDLSN-NESIFSF  175 (182)
Q Consensus        99 r~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~v~~~~-~~~~~~~  175 (182)
                      ++.|+.-+|+.-|++.+++-...-..+.....+.....   +..+..|.+...++ +..+.+..+..+.+| +++.+.|
T Consensus       204 ~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~---g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF  279 (304)
T COG0109         204 KAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALL---GYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLF  279 (304)
T ss_pred             HHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            68999999999999999986544444444433333232   22244555544444 444444444444444 5555555

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=95.41  E-value=0.25  Score=41.38  Aligned_cols=52  Identities=17%  Similarity=0.144  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcCCcchhhhhc---HHHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHGIQTLSVMLG---KEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G~~Tlpv~lG---~~~a~~l~~~l~~~~~~~  129 (182)
                      +...+...+-.++||+.|.|.|+++ +++=|..-|   ++.+..++..+..++...
T Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~   98 (279)
T PRK12884         44 LTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILGLIA   98 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3344456777899999999999988 566666556   566666665555554443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=94.90  E-value=0.3  Score=41.82  Aligned_cols=56  Identities=14%  Similarity=0.175  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGAAVL  132 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~  132 (182)
                      ....+...+-..+||..|.|.|++.+ .|.+|. ++.+|.+..+...+..++.++...
T Consensus        61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~  118 (306)
T TIGR02056        61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFI  118 (306)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667789999999999999776 233443 466777777766666555544443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=94.74  E-value=0.87  Score=38.95  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhc
Q 044974            5 PPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGL   47 (182)
Q Consensus         5 ~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~   47 (182)
                      +..+......++...+||     +++|++|..++++++..++.
T Consensus       115 ~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~d~l~va~~~~l  152 (295)
T PRK12324        115 PKLALVLLVYLVLNLAYS-----FKLKHQPVLDVFCIASGFVL  152 (295)
T ss_pred             HHHHHHHHHHHHHHHHhh-----HHhcCCchhhHHHHHHHHHH
Confidence            444444566777888999     59999999999987777663

>PRK08238 hypothetical protein; Validated

Probab=94.41  E-value=1.2  Score=40.72  Aligned_cols=84  Identities=20%  Similarity=0.357  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            4 SPPLVLGVIAWLFISTAYSAQLPFLRWKGNSFLAAVCMVFMCGLLPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         4 ~~~l~~~~~~~~~lg~~YS~~~pP~rlK~~p~~~~l~v~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      ++..+..++...++..+||     +++|+.+++.++++++.++.-...|..      ..+    .+.+.+++. +..++.
T Consensus       294 ~~~~~~~~~~~~~~~~~Ys-----~~lKr~~~~~~~~la~~~~lr~~~G~~------a~~----~~~s~wll~-~~~~~~  357 (479)
T PRK08238        294 GPAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTLAALYTLRIIAGAA------AIG----VALSFWLLA-FSMFFF  357 (479)
T ss_pred             hHHHHHHHHHHHHHHHHhh-----HHhcCCccccchHHHHHHHHHHHHHHH------Hhc----cCHHHHHHH-HHHHHH
Confidence            3444555567777778999     589999999999888877643333321      112    234444332 333456


Q ss_pred             HHHHHHhhcCChHHHHHcCC
Q 044974           84 VAIAFVKDLHDVEGDREHGI  103 (182)
Q Consensus        84 ~~~~i~~di~D~egDr~~G~  103 (182)
                      ....+.|...|.++|++.|.
T Consensus       358 l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        358 LSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHHHhHHHHHHHHhcCC
Confidence            77889999999999999886

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=94.15  E-value=0.49  Score=40.49  Aligned_cols=51  Identities=27%  Similarity=0.402  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhhcCChHHHHHc---CCcchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974           80 TCLSVAIAFVKDLHDVEGDREH---GIQTLSV-MLGKEKVFWLSVYMLSTAYGAA  130 (182)
Q Consensus        80 ~~~~~~~~i~~di~D~egDr~~---G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~  130 (182)
                      ++...+..++||+.|.|.||++   ..|-+|. ++.++.+..++..+..++....
T Consensus        56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la  110 (295)
T PRK12324         56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALA  110 (295)
T ss_pred             HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            3445678899999999999995   3344443 4667777776666655554443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=93.28  E-value=1.2  Score=38.32  Aligned_cols=52  Identities=13%  Similarity=0.124  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~  128 (182)
                      +.+++...+-.++||..|+|-||.+. -|-+|. +.-+|.++.++..+..++..
T Consensus        53 ~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~  106 (299)
T PRK13592         53 FTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL  106 (299)
T ss_pred             HHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            33444567778999999999998763 233433 34556666666555444443

>PRK13595 ubiA prenyltransferase; Provisional

Probab=93.27  E-value=1.3  Score=37.90  Aligned_cols=56  Identities=18%  Similarity=-0.004  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcCCc-chhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHGIQ-TLSV-MLGKEKVFWLSVYMLSTAYGAAVL  132 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G~~-Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~  132 (182)
                      .+..........+||+-|.|.|+++-.+ -+|. ++.++.+..+...+...+....+.
T Consensus        54 ~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~  111 (292)
T PRK13595         54 YLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLY  111 (292)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            4444566688999999999999865433 1232 566666666655555555443333

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=93.24  E-value=0.85  Score=36.90  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=22.5

Q ss_pred             HHHHHHHHHhhcCChHHHHHc-CCcchhhhhcH
Q 044974           81 CLSVAIAFVKDLHDVEGDREH-GIQTLSVMLGK  112 (182)
Q Consensus        81 ~~~~~~~i~~di~D~egDr~~-G~~Tlpv~lG~  112 (182)
                      +........||..|.|.||.+ +.+.=|..-|+
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~   66 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR   66 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence            556778899999999999995 33344443333

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=92.97  E-value=0.9  Score=38.32  Aligned_cols=55  Identities=20%  Similarity=0.147  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974           76 SAFMTCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAYGAA  130 (182)
Q Consensus        76 ~~~~~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~~~~  130 (182)
                      .+...+...+...+||+.|+|-||++-.   |-+|. +.-++.+..+..++..++.+..
T Consensus        53 ~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a  111 (289)
T COG0382          53 FLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALA  111 (289)
T ss_pred             HHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3444456678889999999999999876   45554 3334445544444444444333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=92.91  E-value=1.4  Score=36.88  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHcCC-cchh
Q 044974           76 SAFMTCLSVAIAFVKDLHDVEGDREHGI-QTLS  107 (182)
Q Consensus        76 ~~~~~~~~~~~~i~~di~D~egDr~~G~-~Tlp  107 (182)
                      .+...+...+...+||..|.|.|+++.. |+.+
T Consensus        42 ~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872         42 LLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             HHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            3445556778899999999999987543 4443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=92.80  E-value=1.1  Score=37.78  Aligned_cols=46  Identities=11%  Similarity=0.046  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHc---CCcchhh-hhcHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREH---GIQTLSV-MLGKEKVFWLSVYM  122 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~---G~~Tlpv-~lG~~~a~~l~~~l  122 (182)
                      +...+...+-.++||+.|.|.|++.   ..|.+|. ++.++.+..+...+
T Consensus        43 l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~   92 (282)
T TIGR01475        43 IAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILS   92 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHH
Confidence            3444567788899999999999986   3355555 56677777666544

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=92.54  E-value=1.1  Score=37.53  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcCC-cchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHGI-QTLSV-MLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G~-~Tlpv-~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      ...+...+-.++||+-|.|-|+++.. |.+|. +.-++.+..+...+..++.+.
T Consensus        46 ~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~   99 (276)
T PRK12882         46 AVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVAL   99 (276)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            33445667789999999999997542 33333 345677776666666555443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=92.48  E-value=1.8  Score=36.29  Aligned_cols=54  Identities=9%  Similarity=0.111  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGAA  130 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~  130 (182)
                      +...+...+-.++||+.|.|-||+.. -|.+|. ++-++.+..+...+..++....
T Consensus        44 l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~   99 (279)
T PRK09573         44 LVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILS   99 (279)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            33445567778999999999999753 344443 5567777777766666655433

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=91.69  E-value=1.9  Score=36.96  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=26.4

Q ss_pred             HhhcCChHHHHHcCCcchhh---hhcHHHHHHHHHHHHHHHHHH
Q 044974           89 VKDLHDVEGDREHGIQTLSV---MLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        89 ~~di~D~egDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      +||+.|+|-||.+ +++-|.   ++-++.+..+...+..++...
T Consensus        72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~~~lal~l  114 (308)
T PRK12887         72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIITGILALIL  114 (308)
T ss_pred             HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999964 466664   455666665555444444433

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=91.26  E-value=1.6  Score=37.90  Aligned_cols=49  Identities=29%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             HHHHhhcCChHHHHHcCC-cchhh-hhcHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           86 IAFVKDLHDVEGDREHGI-QTLSV-MLGKEKVFWLSVYMLSTAYGAAVLVG  134 (182)
Q Consensus        86 ~~i~~di~D~egDr~~G~-~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~~~  134 (182)
                      -.++||+-|.|.|++.+. |.+|. ++-+|.+..++..+..++......++
T Consensus        66 ~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~  116 (331)
T PRK12392         66 SQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLG  116 (331)
T ss_pred             HhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999997543 33333 45577777777766666665554443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=90.66  E-value=1.7  Score=36.60  Aligned_cols=48  Identities=19%  Similarity=0.228  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHH
Q 044974           80 TCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAY  127 (182)
Q Consensus        80 ~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~  127 (182)
                      .+...+-.++||+.|.|-|++..+   |.+|. ++-++.+..+...+..++.
T Consensus        55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~  106 (285)
T PRK12847         55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIAL  106 (285)
T ss_pred             HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            345667789999999999986442   44444 4556666666655555544

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=90.59  E-value=3  Score=35.47  Aligned_cols=50  Identities=16%  Similarity=-0.047  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcCC-cchhhhhc---HHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHGI-QTLSVMLG---KEKVFWLSVYMLSTAY  127 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G~-~Tlpv~lG---~~~a~~l~~~l~~~~~  127 (182)
                      ...+...+-..+||+.|.|-|++..+ ++=|..=|   ++.+..+...+..++.
T Consensus        53 g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~  106 (289)
T PLN02809         53 GALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGL  106 (289)
T ss_pred             HHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            33445667789999999999997643 34444445   5555554444444333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=89.92  E-value=2.7  Score=35.66  Aligned_cols=19  Identities=21%  Similarity=0.193  Sum_probs=16.1

Q ss_pred             HHHhhcCChHHHHHcCCcc
Q 044974           87 AFVKDLHDVEGDREHGIQT  105 (182)
Q Consensus        87 ~i~~di~D~egDr~~G~~T  105 (182)
                      ..+||+.|.|.||++.+|.
T Consensus        62 y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875         62 YGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hcchhhhhhhccccCCCcc
Confidence            3479999999999988775

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=89.88  E-value=2.8  Score=35.03  Aligned_cols=45  Identities=11%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             HHHHHHHHhhcCChHHHHHcCCcchhhh---hcHHHHHHHHHHHHHHHH
Q 044974           82 LSVAIAFVKDLHDVEGDREHGIQTLSVM---LGKEKVFWLSVYMLSTAY  127 (182)
Q Consensus        82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~---lG~~~a~~l~~~l~~~~~  127 (182)
                      ...+-.++||+-|.|.|+.++ ++=|..   +-++.+..+...+..++.
T Consensus        49 ~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~g~   96 (277)
T PRK12883         49 GCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAVGL   96 (277)
T ss_pred             HHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence            345678999999999999754 443433   556777776655555443

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=89.79  E-value=4  Score=34.88  Aligned_cols=47  Identities=15%  Similarity=0.191  Sum_probs=30.3

Q ss_pred             HHHHHHHhhcCChHHHHHc------------CCcchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974           83 SVAIAFVKDLHDVEGDREH------------GIQTLSV-MLGKEKVFWLSVYMLSTAYGAA  130 (182)
Q Consensus        83 ~~~~~i~~di~D~egDr~~------------G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~  130 (182)
                      ..| .++||+-|.|-|+++            .-|.+|. +.-+|.+..+...+..++..+.
T Consensus        55 ~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~  114 (297)
T PRK12871         55 EAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALI  114 (297)
T ss_pred             HHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            444 699999999999753            1233332 5667777777766666555443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=89.76  E-value=4.3  Score=35.04  Aligned_cols=45  Identities=11%  Similarity=0.085  Sum_probs=27.2

Q ss_pred             HHHHHHHHhhcCChHHHHHcCCcchhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 044974           82 LSVAIAFVKDLHDVEGDREHGIQTLSVMLGKEKVFWLSVYMLSTAYGAAVL  132 (182)
Q Consensus        82 ~~~~~~i~~di~D~egDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~  132 (182)
                      .+.+...+||.-|.|.|+.+ +.   -|-|+  .++.+..+..++.+..+.
T Consensus        70 ~~~s~~~iNd~~D~eiD~IN-~P---~r~~~--s~~~a~~ls~la~llGl~  114 (307)
T PRK13591         70 IIYSVYTLDRALDSEEDAVN-RS---ELIGS--NKKIGLLVSLLAFLLGTY  114 (307)
T ss_pred             HHHHHHHHhhhccchhhhcc-Cc---ccccc--CHHHHHHHHHHHHHHHHH
Confidence            45778999999999999875 33   34443  333344444444443333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=89.18  E-value=2.6  Score=35.49  Aligned_cols=50  Identities=16%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhhcCChHHHHHcCC---cchh-hhhcHHHHHHHHHHHHHHHHHH
Q 044974           80 TCLSVAIAFVKDLHDVEGDREHGI---QTLS-VMLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        80 ~~~~~~~~i~~di~D~egDr~~G~---~Tlp-v~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      .+...+-..+||+.|.|-|++..+   |-+| -+..++.+..+...+..++...
T Consensus        50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l  103 (281)
T TIGR01474        50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGV  103 (281)
T ss_pred             HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            344567789999999999986543   3333 2444666666655554444433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=89.07  E-value=4.2  Score=34.57  Aligned_cols=55  Identities=13%  Similarity=0.073  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcCC------cchhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHGI------QTLSV-MLGKEKVFWLSVYMLSTAYGAAVL  132 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G~------~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~  132 (182)
                      ...+.-.+-...||..|.|.|+....      |++|. ++-+|.+......+..++....+.
T Consensus        48 ~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~  109 (296)
T PRK05951         48 GYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWS  109 (296)
T ss_pred             HHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            33445667889999999776665542      33332 356777777776666665544443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=89.00  E-value=1.5  Score=36.90  Aligned_cols=49  Identities=10%  Similarity=0.076  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974           81 CLSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        81 ~~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      +...+-..+||.-|.|.|++.+ .|.+|. ++-+|.+.++...+..++.+.
T Consensus        49 l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l   99 (283)
T TIGR01476        49 LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV   99 (283)
T ss_pred             HHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            3456678999999999999764 333333 455667776665555554433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK08238 hypothetical protein; Validated

Probab=88.17  E-value=3.5  Score=37.61  Aligned_cols=53  Identities=21%  Similarity=0.193  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHcCC-cchh---hhhcHHHHHHHHHHHHHHHHHHHH
Q 044974           79 MTCLSVAIAFVKDLHDVEGDREHGI-QTLS---VMLGKEKVFWLSVYMLSTAYGAAV  131 (182)
Q Consensus        79 ~~~~~~~~~i~~di~D~egDr~~G~-~Tlp---v~lG~~~a~~l~~~l~~~~~~~~i  131 (182)
                      .++...+..++||+-|.|.||++-+ |.=|   -++..+.+..++..+..++..+..
T Consensus       235 ~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~  291 (479)
T PRK08238        235 FSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALAL  291 (479)
T ss_pred             HHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3456778899999999999999732 2223   356667777766666655554333

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=88.16  E-value=3.9  Score=34.98  Aligned_cols=53  Identities=17%  Similarity=0.036  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcCC-cchh---hhhcHHHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHGI-QTLS---VMLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G~-~Tlp---v~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      +..++...+-.++||+.|.|.||++.+ |.=|   -++.++.+..+...+..++...
T Consensus        51 ~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~  107 (294)
T PRK12873         51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFV  107 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            333445667789999999999997765 2333   3556677777666555554443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.13  E-value=3.4  Score=35.08  Aligned_cols=51  Identities=24%  Similarity=0.180  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHcC---Ccchh-hhhcHHHHHHHHHHHHHHHHHH
Q 044974           79 MTCLSVAIAFVKDLHDVEGDREHG---IQTLS-VMLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        79 ~~~~~~~~~i~~di~D~egDr~~G---~~Tlp-v~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      ..+...+-.++||+.|.|-||+..   -|.+| -++-++.+..+...+..++...
T Consensus        55 ~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l  109 (290)
T PRK12870         55 ALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGL  109 (290)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            334566778999999999998643   23444 3456666666665555554433

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=87.84  E-value=3.3  Score=35.51  Aligned_cols=48  Identities=15%  Similarity=0.145  Sum_probs=32.8

Q ss_pred             HHHHHHHHhhcCChHHHHHcC-Ccchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974           82 LSVAIAFVKDLHDVEGDREHG-IQTLSV-MLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        82 ~~~~~~i~~di~D~egDr~~G-~~Tlpv-~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      ...+-.++||+-|.|.||+++ .|.+|. ++.++.+..+...+..++..+
T Consensus        77 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l  126 (314)
T PRK07566         77 LCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAV  126 (314)
T ss_pred             HHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999753 333432 556777777766666555543

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=87.15  E-value=4.2  Score=34.23  Aligned_cols=53  Identities=9%  Similarity=-0.026  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYMLSTAYGAA  130 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~  130 (182)
                      ...+...+-..+||+.|.|-|+++.   -|.+|. +..++.+..+...+..++....
T Consensus        44 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~  100 (279)
T PRK12869         44 GGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALG  100 (279)
T ss_pred             HHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            3334466778999999999999854   355554 4577777776665555544443

>PLN00012 chlorophyll synthetase; Provisional

Probab=87.09  E-value=7.1  Score=34.55  Aligned_cols=48  Identities=17%  Similarity=0.117  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhcCChHHHHHcC-Ccchh-hhhcHHHHHHHHHHHHHHHHH
Q 044974           81 CLSVAIAFVKDLHDVEGDREHG-IQTLS-VMLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        81 ~~~~~~~i~~di~D~egDr~~G-~~Tlp-v~lG~~~a~~l~~~l~~~~~~  128 (182)
                      +...+-.++||+-|.|.|++.+ .|.+| -++.++.+......+...+..
T Consensus       134 L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~  183 (375)
T PLN00012        134 FLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLG  183 (375)
T ss_pred             HHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHH
Confidence            3456678999999999998874 23333 234455665544444443333

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=86.05  E-value=7.8  Score=32.56  Aligned_cols=56  Identities=14%  Similarity=0.124  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHhhcCChHH--HHH---cCCcchhh-hhcHHHHHHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEG--DRE---HGIQTLSV-MLGKEKVFWLSVYMLSTAYGAAVL  132 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~eg--Dr~---~G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~  132 (182)
                      +...+...+-..+||..|.|.  |++   .+.|.+|. ++-+|++......+..++.+..+.
T Consensus        45 l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~  106 (293)
T PRK06080         45 LAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLY  106 (293)
T ss_pred             HHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334445667889999999953  532   23344443 345677777766666655544443

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=85.67  E-value=6.5  Score=32.95  Aligned_cols=51  Identities=8%  Similarity=-0.006  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~~~~~~  128 (182)
                      ...+...+-..+||+.|.|-|++..   .|.+|. ++-+|.+..++..+..++..
T Consensus        43 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~   97 (280)
T TIGR01473        43 GTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVA   97 (280)
T ss_pred             HHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence            3344566778999999999999743   355544 55677777776666555444

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=85.47  E-value=6.3  Score=33.42  Aligned_cols=52  Identities=8%  Similarity=0.043  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      ...+...+-.++||+.|.|-|++..   -|.+|. ++.+|.+..+...+..++.+.
T Consensus        52 ~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l  107 (296)
T PRK04375         52 GIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLL  107 (296)
T ss_pred             HHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            3334566778999999999999743   344443 557777777766555554443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=85.45  E-value=6.7  Score=33.02  Aligned_cols=48  Identities=17%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974           81 CLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        81 ~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~~  128 (182)
                      +...+-.++||+.|.|-||+..+   |.+|. ++-++++..+...+..++..
T Consensus        53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~  104 (282)
T PRK12848         53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFL  104 (282)
T ss_pred             HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence            34567789999999999985432   44443 45667777666666555543

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=85.23  E-value=11  Score=32.32  Aligned_cols=43  Identities=19%  Similarity=0.055  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLS  119 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~  119 (182)
                      +...+...+-..+||+.|.|-|++.-   -|.+|. +.-++.+..+.
T Consensus        56 lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~  102 (300)
T PRK13106         56 LALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI  102 (300)
T ss_pred             HHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence            33344556677899999999999773   244443 35566666554

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=85.03  E-value=5.9  Score=33.95  Aligned_cols=51  Identities=6%  Similarity=0.034  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~~~  128 (182)
                      ...+...+-..+||+.|.|-|++..+   |-+|. ++.++.+..+...+..++..
T Consensus        55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~  109 (306)
T PRK13362         55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFG  109 (306)
T ss_pred             HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34445678899999999999987543   45553 55667777766655555544

>PRK11383 hypothetical protein; Provisional

Probab=83.47  E-value=11  Score=28.83  Aligned_cols=86  Identities=17%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCchhhh--hhhHHHHHHHHHHhhc-cchhHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 044974            7 LVLGVIAWLFISTAYSAQLPFLRWK--GNSFLAAVCMVFMCGL-LPQVPFFFHVQKYLLGRPMEITKPLMFASAFMTCLS   83 (182)
Q Consensus         7 l~~~~~~~~~lg~~YS~~~pP~rlK--~~p~~~~l~v~~~~g~-~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   83 (182)
                      .+.+++.+++..+.+.++.   |-|  ..|.. ....+..|.. +..++.+..   ++...+...+.-.+....|+....
T Consensus        44 Y~~vl~lglF~avs~QK~v---RD~~egi~vt-~~f~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLF  116 (145)
T PRK11383         44 YFAVLVLGLFSAASYQKTV---RDKYEGIPTT-SIYYMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLF  116 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHH---hhcccCCChh-HHHHHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHH
Confidence            3445566667666666322   444  45633 3334444432 222232221   234444444444455555555567


Q ss_pred             HHHHHHhhcCChHHHH
Q 044974           84 VAIAFVKDLHDVEGDR   99 (182)
Q Consensus        84 ~~~~i~~di~D~egDr   99 (182)
                      .++.+-|+.||.+.++
T Consensus       117 gai~vQKn~RD~~~~~  132 (145)
T PRK11383        117 GAVAVQKNIRDAGINP  132 (145)
T ss_pred             HHHHHHhhhhhhhhcc
Confidence            7899999999996554

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=82.98  E-value=13  Score=32.00  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhhcCChHHHHHc-----CCcchh-hhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 044974           80 TCLSVAIAFVKDLHDVEGDREH-----GIQTLS-VMLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLLSKLVTIIGHATL  153 (182)
Q Consensus        80 ~~~~~~~~i~~di~D~egDr~~-----G~~Tlp-v~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  153 (182)
                      .+.-.+-++.||..|.|.|...     +.|+++ -.+-+|++++....+..++.++.+.+....+    .....+|....
T Consensus        49 ~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g----~~~l~igl~g~  124 (317)
T PRK13387         49 LAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTS----WLLLVIGLICF  124 (317)
T ss_pred             HHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHH
Confidence            3356788999999999875443     333333 2345677777777777777665555443322    12334444444


Q ss_pred             HHHHHHH
Q 044974          154 LLFLWHR  160 (182)
Q Consensus       154 ~~~l~~~  160 (182)
                      .....|.
T Consensus       125 ~~~~~Yt  131 (317)
T PRK13387        125 AIGILYT  131 (317)
T ss_pred             HHhhhhc
Confidence            4444453

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=82.68  E-value=17  Score=30.87  Aligned_cols=84  Identities=10%  Similarity=0.026  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhhcCChHH-----HHHcCCcchhh-hhcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEG-----DREHGIQTLSV-MLGKEKVFWLSVYMLSTAYGAAVLVGASSSFLL--SKLVTIIG  149 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~eg-----Dr~~G~~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~  149 (182)
                      .+.+.-.+.++.||..|.+.     ||..+.|.++. .+-+|..+..+..+..++.++.+.+....+...  ......+|
T Consensus        36 ~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg  115 (284)
T TIGR00751        36 TAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG  115 (284)
T ss_pred             HHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH
Confidence            33446678899999999844     44444555543 344567777776666666555554433222100  01234455


Q ss_pred             HHHHHHHHHHHH
Q 044974          150 HATLLLFLWHRA  161 (182)
Q Consensus       150 ~~~~~~~l~~~~  161 (182)
                      .........|..
T Consensus       116 ~~~~~~~~~Yt~  127 (284)
T TIGR00751       116 ALCIAAAITYTV  127 (284)
T ss_pred             HHHHHHhHhhcC
Confidence            554445555653

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=82.37  E-value=18  Score=30.73  Aligned_cols=41  Identities=17%  Similarity=0.136  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWL  118 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l  118 (182)
                      ...+...+-..+||+.|.|-|++..   -|-+|. ++-++.+..+
T Consensus        50 ~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~   94 (291)
T PRK12886         50 AMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILF   94 (291)
T ss_pred             HHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHH
Confidence            3334455667899999999999764   233333 2346666554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=82.15  E-value=17  Score=30.79  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=41.8

Q ss_pred             chHHHHHHH-HHHHHHHHHHHHHhhcCChHH--HHHcCCcchhhhhc-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 044974           68 ITKPLMFAS-AFMTCLSVAIAFVKDLHDVEG--DREHGIQTLSVMLG-KEKVFWLSVYMLSTAYGAAVLVGASSSFLLSK  143 (182)
Q Consensus        68 ~~~~~~~l~-~~~~~~~~~~~i~~di~D~eg--Dr~~G~~Tlpv~lG-~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~  143 (182)
                      +++....+. ..+.+.-.+.+..||..|.+.  |+++- ++.....| ++..++....+..++.+..+.+....+    .
T Consensus        32 f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~----~  106 (285)
T TIGR02235        32 FHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HSIVNLTGSRSLVFWLANFFLLIGLVGIAALSWRWQ----I  106 (285)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----H
Confidence            344433332 333445668899999999888  76422 12211122 344444444444444444433333221    1


Q ss_pred             HHHHHHHHHHHHHHHH
Q 044974          144 LVTIIGHATLLLFLWH  159 (182)
Q Consensus       144 ~~~~~~~~~~~~~l~~  159 (182)
                      ....+|.........|
T Consensus       107 ~~l~lg~~g~~~~~~Y  122 (285)
T TIGR02235       107 TVLALVGLCCFLGYLY  122 (285)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            3344454444444445

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=81.90  E-value=17  Score=30.84  Aligned_cols=42  Identities=10%  Similarity=-0.009  Sum_probs=27.4

Q ss_pred             HHHHHHHHhhcCChHHHHHcC---Ccchhh-hhcHHHHHHHHHHHH
Q 044974           82 LSVAIAFVKDLHDVEGDREHG---IQTLSV-MLGKEKVFWLSVYML  123 (182)
Q Consensus        82 ~~~~~~i~~di~D~egDr~~G---~~Tlpv-~lG~~~a~~l~~~l~  123 (182)
                      ...+-..+||+-|.|-|++..   -|-+|. ++-++.+..+...+.
T Consensus        59 ~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~  104 (291)
T PRK12874         59 ARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNA  104 (291)
T ss_pred             HHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            445557899999999999884   344443 445566655554444

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=81.81  E-value=5.7  Score=33.81  Aligned_cols=51  Identities=4%  Similarity=-0.033  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHcCC---cchh-hhhcHHHHHHHHHHHHHHHHHH
Q 044974           79 MTCLSVAIAFVKDLHDVEGDREHGI---QTLS-VMLGKEKVFWLSVYMLSTAYGA  129 (182)
Q Consensus        79 ~~~~~~~~~i~~di~D~egDr~~G~---~Tlp-v~lG~~~a~~l~~~l~~~~~~~  129 (182)
                      +.+...+-..+||+-|.|-|++.-+   |-+| -+.-++.+..+...+..+...+
T Consensus        46 ~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~  100 (286)
T PRK12895         46 AVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEIC  100 (286)
T ss_pred             HHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3345566779999999999988722   2233 3556777777666665555443

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=81.58  E-value=12  Score=32.18  Aligned_cols=45  Identities=16%  Similarity=0.200  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHcCC---cchhh-hhcHHHHHHHHH
Q 044974           76 SAFMTCLSVAIAFVKDLHDVEGDREHGI---QTLSV-MLGKEKVFWLSV  120 (182)
Q Consensus        76 ~~~~~~~~~~~~i~~di~D~egDr~~G~---~Tlpv-~lG~~~a~~l~~  120 (182)
                      .+.+.+.-.+-..+||+-|.|-|++.-+   |-+|. +..++.+..+..
T Consensus        53 ~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~  101 (300)
T PRK12876         53 GSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLT  101 (300)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence            3444445556678999999999998863   33443 344556655553

>PLN02776 prenyltransferase

Probab=81.07  E-value=18  Score=31.70  Aligned_cols=51  Identities=10%  Similarity=-0.008  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHcC----CcchhhhhcHHHHHHHHHHHHHHHH
Q 044974           77 AFMTCLSVAIAFVKDLHDVEGDREHG----IQTLSVMLGKEKVFWLSVYMLSTAY  127 (182)
Q Consensus        77 ~~~~~~~~~~~i~~di~D~egDr~~G----~~Tlpv~lG~~~a~~l~~~l~~~~~  127 (182)
                      +...+...+-..+||+.|.|-|++..    +..-.-++.++.+..+...+..++.
T Consensus        36 lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~   90 (341)
T PLN02776         36 AGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGV   90 (341)
T ss_pred             HHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34444566778999999999998844    2223345667777776655555444

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=80.91  E-value=14  Score=31.69  Aligned_cols=67  Identities=13%  Similarity=0.149  Sum_probs=36.7

Q ss_pred             chHHHHHHH-HHHHHHHHHHHHHhhcCChH--HHHHcCCcchhhh-hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 044974           68 ITKPLMFAS-AFMTCLSVAIAFVKDLHDVE--GDREHGIQTLSVM-LGKEKVFWLSVYMLSTAYGAAVLVGA  135 (182)
Q Consensus        68 ~~~~~~~l~-~~~~~~~~~~~i~~di~D~e--gDr~~G~~Tlpv~-lG~~~a~~l~~~l~~~~~~~~i~~~~  135 (182)
                      +++...++. +...+.-.+-+..||..|.+  .|+++- +..+.. ..+|...++...+..++.+..+.+..
T Consensus        45 f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~-~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~  115 (304)
T PRK07419         45 FRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF-HSVVNLTGNKSLVFWLANLFLLLGLLGILAIAL  115 (304)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445443333 33444566789999999998  576421 111111 13566666666666665555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
3lsn_A	304	Geranyltranstransferase; structural genomics, prot	82.22
3ts7_A	324	Geranyltranstransferase; isoprenoid synthesis, far	80.95
3m0g_A	297	Farnesyl diphosphate synthase; structural genomics	80.7
3lom_A	313	Geranyltranstransferase; geranyltransferase, struc	80.58

>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*

Probab=82.22  E-value=0.95  Score=37.58  Aligned_cols=51  Identities=20%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~  128 (182)
                      +...+..++-+.+|+.|+.+           |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus       211 ~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~  272 (304)
T 3lsn_A          211 YAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALH  272 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445678899999999976           5678999999999999999877666555443

>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}

Probab=80.95  E-value=0.93  Score=38.05  Aligned_cols=51  Identities=24%  Similarity=0.367  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~  128 (182)
                      +.-.+..++-+.+|+.|+.+           |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus       217 ~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~  278 (324)
T 3ts7_A          217 YAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALE  278 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445578899999999866           6788999999999999999877666555443

>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A

Probab=80.70  E-value=1.1  Score=37.00  Aligned_cols=51  Identities=27%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~  128 (182)
                      +...+..++-+.+|+.|+.+           |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus       204 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~  265 (297)
T 3m0g_A          204 YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEA  265 (297)
T ss_dssp             HHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345568899999999976           5678999999999999999877665555443

>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}

Probab=80.58  E-value=1  Score=37.50  Aligned_cols=51  Identities=12%  Similarity=0.160  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHhhcCChHH-----------HHHcCCcchhhhhcHHHHHHHHHHHHHHHHH
Q 044974           78 FMTCLSVAIAFVKDLHDVEG-----------DREHGIQTLSVMLGKEKVFWLSVYMLSTAYG  128 (182)
Q Consensus        78 ~~~~~~~~~~i~~di~D~eg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~  128 (182)
                      +...+..++-+.+|+.|+.+           |.+.|+.|+|+.+|.+++...+.-..--+.-
T Consensus       218 ~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~  279 (313)
T 3lom_A          218 YGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMD  279 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345578899999999876           5688999999999999999877665554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00