Citrus Sinensis ID: 045069
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 554 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C7V5 | 552 | Putative pentatricopeptid | yes | no | 0.983 | 0.987 | 0.543 | 1e-173 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.976 | 0.631 | 0.322 | 9e-89 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.960 | 0.720 | 0.319 | 3e-84 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.983 | 0.673 | 0.336 | 1e-83 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.972 | 0.618 | 0.331 | 2e-83 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.967 | 0.769 | 0.317 | 2e-82 | |
| Q9ZQ74 | 689 | Pentatricopeptide repeat- | no | no | 0.954 | 0.767 | 0.326 | 1e-79 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.949 | 0.624 | 0.307 | 2e-79 | |
| P93005 | 727 | Pentatricopeptide repeat- | no | no | 0.976 | 0.744 | 0.325 | 3e-79 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.962 | 0.768 | 0.317 | 3e-79 |
| >sp|Q9C7V5|PP104_ARATH Putative pentatricopeptide repeat-containing protein At1g64310 OS=Arabidopsis thaliana GN=PCMP-E65 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 608 bits (1568), Expect = e-173, Method: Compositional matrix adjust.
Identities = 297/546 (54%), Positives = 385/546 (70%), Gaps = 1/546 (0%)
Query: 4 NLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDK 63
L ++ E ++ Q+ T++LH+ V K+ L RDP++AT+L R YALN+ L SAR LFD
Sbjct: 6 QLRLIIYEFTRKIQTRLNTQKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDV 65
Query: 64 TPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123
P+RSVFLWNSIIRAYA AH+F SLF +LR+ +PDNFTYAC+ R SE+ D GL
Sbjct: 66 FPERSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGL 125
Query: 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183
R +HG AIVSGLG D I SA+V AYSK LI EA K+F + DPDL L N MI G+ C
Sbjct: 126 RCIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCC 185
Query: 184 GFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS 243
GFWDK + LF+ M G P+ YT+V L SGL +PSLL V +H FCLK + DS+ YV
Sbjct: 186 GFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVG 245
Query: 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK 303
LV+MY+RC C+ SA VFNS+ PDLV S+LITGYS+ G++ +AL+ F +L M GKK
Sbjct: 246 CALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKK 305
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363
D VL+A VL + A+ ++ G +H YVI+ G EL + V SAL+DMYSKCG L + +
Sbjct: 306 PDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSL 365
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
F + E+NI+++NS+ILGLGLHGF AFE F +I+E GL PDE TFSALLC CCH GL+
Sbjct: 366 FAGIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLL 425
Query: 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483
N G+EIF RM E+GI+ +TEHY+YMVKL+G+AG LEEA+ F+ SL KP+D + GALLS
Sbjct: 426 NKGQEIFERMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLS 485
Query: 484 CCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
CC ++ N+ LAE+VA + +N + R+ YKVMLSN YA GRWD+V +LRD I ++ K
Sbjct: 486 CCEVHENTHLAEVVAENIHKNGEERRSVYKVMLSNVYARYGRWDEVERLRDGISESYGGK 545
Query: 543 EAGVSW 548
G+SW
Sbjct: 546 LPGISW 551
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 175/542 (32%), Positives = 295/542 (54%), Gaps = 1/542 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL + S + +LH LV + + + L+ +Y+ A LF +
Sbjct: 245 VLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRAD 304
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
WN +I Y + ++ + F ++ + + PD T++ + + S+ +L + +H
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHC 364
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ + D +SAL+ AY K + A +F + D+V+ +MISG+ H G +
Sbjct: 365 YIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYID 424
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248
SL++F W++++ +P+E TLV ++ + L +G+ +HGF +K FD+ + ++
Sbjct: 425 SLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVID 484
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308
MYA+C MN AY +F L D+V+W+++IT +Q + A+ FR++ + G D V
Sbjct: 485 MYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVS 544
Query: 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
I++ L+A A + G IHG++I+H V S L+DMY+KCG L + VF+TM
Sbjct: 545 ISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK 604
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCACCHGGLVNDGR 427
E+NI+++NS+I G HG + F +++EK G+ PD+ TF ++ +CCH G V++G
Sbjct: 605 EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGV 664
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
F MTE+YGIQ + EHY +V L G AG L EAY + S+P P D V G LL C +
Sbjct: 665 RFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+ N +LAE+ + +L + DP Y V++SN +A W+ V K+R + + ++K G S
Sbjct: 725 HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYS 784
Query: 548 WV 549
W+
Sbjct: 785 WI 786
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 181/567 (31%), Positives = 304/567 (53%), Gaps = 35/567 (6%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNV--LPSARILFDKTPQRSVFLWNSI 75
SL + K+ H + + DP+ A+KL + AL++ L AR +FD+ P+ + F WN++
Sbjct: 42 SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101
Query: 76 IRAYALAHRFNDAKSLFKNLL-RTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG 134
IRAYA + F +++ +Q P+ +T+ + +A +E S L + +HG A+ S
Sbjct: 102 IRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 161
Query: 135 LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFD 194
+G D +++L+ Y +D A KVF + + D+V NSMI+GF G DK+L+LF
Sbjct: 162 VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFK 221
Query: 195 WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254
M T+VG++S + L G+ + + ++ + +++ ++ MY +C
Sbjct: 222 KMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCG 281
Query: 255 CMNSAYHVF-------------------------------NSLFHPDLVTWSALITGYSQ 283
+ A +F NS+ D+V W+ALI+ Y Q
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 284 QGDYGKALYYFRKLNMQGK-KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVM 342
G +AL F +L +Q K + + + S L+A A+ + G IH Y+ +HG ++
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401
Query: 343 VSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG 402
V+SAL+ MYSKCG L +VF ++ +R++ ++++I GL +HG +A + F + E
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461
Query: 403 LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEA 462
+ P+ TF+ + CAC H GLV++ +F +M YGI + +HY +V +LG +G LE+A
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA 521
Query: 463 YSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522
FI ++P P +V GALL C I+ N +LAE+ +L E +PR V+LSN YA+
Sbjct: 522 VKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKL 581
Query: 523 GRWDDVMKLRDDIVDNGLRKEAGVSWV 549
G+W++V +LR + GL+KE G S +
Sbjct: 582 GKWENVSELRKHMRVTGLKKEPGCSSI 608
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 185/550 (33%), Positives = 293/550 (53%), Gaps = 5/550 (0%)
Query: 3 FNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFD 62
+N +L L++ L KE+H L+ K+ D F T L +YA + AR +FD
Sbjct: 136 YNFTYL-LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194
Query: 63 KTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPG 122
+ P+R + WN+I+ Y+ A + K++ LKP T + A S +
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 123 LRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAH 182
+ +HG A+ SG S+ALV Y+K ++ A ++FDG+ + ++V NSMI +
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYV 242
+++ +F ML G P + +++G + + L G+ IH ++ D V
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374
Query: 243 SSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK 302
+ L+SMY +C +++A +F L LV+W+A+I G++Q G AL YF ++ +
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434
Query: 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQ 362
K D SV+ A A+ + IHG V++ + +V V++ALVDMY+KCG + +
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494
Query: 363 VFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL 422
+F+ MSER++ T+N++I G G HGF A E F ++ + + P+ TF +++ AC H GL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554
Query: 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS--GA 480
V G + F M E Y I+ +HY MV LLG AG L EA+ FI + PV PAV+ GA
Sbjct: 555 VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQM--PVKPAVNVYGA 612
Query: 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540
+L C I+ N + AE A +LFE +P G Y V+L+N Y W+ V ++R ++ GL
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 541 RKEAGVSWVS 550
RK G S V
Sbjct: 673 RKTPGCSMVE 682
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 180/543 (33%), Positives = 290/543 (53%), Gaps = 4/543 (0%)
Query: 12 LSKSHQSLSRT---KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+SKS SL ++LH + K+ LV Y N + SAR +FD+ +R
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD 260
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
V WNSII Y S+F +L + ++ D T + C+++ + R VH
Sbjct: 261 VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ + R+ + L+ YSK +D A VF +SD +V SMI+G+A G +
Sbjct: 321 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248
+++LF+ M G +PD YT+ +++ LL G+ +H + ++ +VS+ L+
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KADPV 307
MYA+C M A VF+ + D+++W+ +I GYS+ +AL F L + + D
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500
Query: 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETM 367
+A VL A A + G IHGY++++G+ V+++LVDMY+KCG L L +F+ +
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560
Query: 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427
+ ++++++ +I G G+HGF +A F + + G+ DE +F +LL AC H GLV++G
Sbjct: 561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
F M E I+ EHY +V +L G+L +AY FI ++P P D + GALL C I
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+ + LAE VA ++FE +P Y V+++N YAE +W+ V +LR I GLRK G S
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740
Query: 548 WVS 550
W+
Sbjct: 741 WIE 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 192/605 (31%), Positives = 298/605 (49%), Gaps = 69/605 (11%)
Query: 14 KSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWN 73
KS S + +HA V K+ + F +L+ Y+ L R +FDK PQR+++ WN
Sbjct: 31 KSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWN 90
Query: 74 SIIRAYALAHRFNDAKSLFKNL-LRTQLK------------------------------P 102
S++ ++A SLF+++ R Q
Sbjct: 91 SVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVL 150
Query: 103 DNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVF 162
+ +++A + ACS +D+ VH S D SALV YSK +++A +VF
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210
Query: 163 DGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLS 222
D + D ++V NS+I+ F G ++L +F ML PDE TL +IS S +
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270
Query: 223 VGQGIHGFCLKSSFDSYDYV-SSVLVSMYARCNCMNSAYHVFNSL--------------- 266
VGQ +HG +K+ D + S+ V MYA+C+ + A +F+S+
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGY 330
Query: 267 ----------------FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
++V+W+ALI GY+Q G+ +AL F L + A
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFA 390
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGF------ELSVMVSSALVDMYSKCGYLGLGIQVF 364
++L A A A + G H +V++HGF E + V ++L+DMY KCG + G VF
Sbjct: 391 NILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVF 450
Query: 365 ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424
M ER+ +++N++I+G +G+ +A E FR+++E G PD T +L AC H G V
Sbjct: 451 RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVE 510
Query: 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSC 484
+GR F+ MT ++G+ +HY MV LLG AG LEEA S I +P D + G+LL+
Sbjct: 511 EGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAA 570
Query: 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544
C ++ N L + VA +L E +P V+LSN YAE G+W+DVM +R + G+ K+
Sbjct: 571 CKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQP 630
Query: 545 GVSWV 549
G SW+
Sbjct: 631 GCSWI 635
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 174/533 (32%), Positives = 286/533 (53%), Gaps = 4/533 (0%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
Q L K++H + K D T L+ +YA + SA +F+ R+V W S+I
Sbjct: 156 QDLDNGKKIHCQLVKVPSF-DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMI 214
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
Y + LF + + + +TY + AC++ S L ++ HG + SG+
Sbjct: 215 AGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIE 274
Query: 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
S ++L+ Y K I A +VF+ S DLV+ +MI G+ H G +++L LF M
Sbjct: 275 LSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKM 334
Query: 197 LRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCM 256
+ P+ T+ ++SG L +G+ +HG +K + V++ LV MYA+C
Sbjct: 335 KGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTN-VANALVHMYAKCYQN 393
Query: 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316
A +VF D+V W+++I+G+SQ G +AL+ F ++N + + V +AS+ +A
Sbjct: 394 RDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSAC 453
Query: 317 AKSANVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIIT 374
A ++ G+ +H Y ++ GF SV V +AL+D Y+KCG +F+T+ E+N IT
Sbjct: 454 ASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTIT 513
Query: 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMT 434
++++I G G G T + E F ++++K P+ESTF+++L AC H G+VN+G++ F+ M
Sbjct: 514 WSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMY 573
Query: 435 EEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA 494
++Y T+HY MV +L AG LE+A I +P D GA L C ++ DL
Sbjct: 574 KDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLG 633
Query: 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
EIV ++ + P +Y V++SN YA DGRW+ ++R+ + GL K AG S
Sbjct: 634 EIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHS 686
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 172/559 (30%), Positives = 288/559 (51%), Gaps = 33/559 (5%)
Query: 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAH 83
++H L+ K +D F LV YA L SAR +FD+ +R+V W S+I YA
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 84 RFNDAKSLFKNLLR-TQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
DA LF ++R ++ P++ T C+ AC++ DL V+ SG+ + +
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT 202
SALV Y K + ID A ++FD +L LCN+M S + G ++L +F+ M+ G
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHV 262
PD +++ IS + + G+ HG+ L++ F+S+D + + L+ MY +C+ ++A+ +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 263 FNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKL------------------------- 297
F+ + + +VTW++++ GY + G+ A F +
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454
Query: 298 -------NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDM 350
+ +G AD V + S+ +A + I+ Y+ ++G +L V + + LVDM
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514
Query: 351 YSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTF 410
+S+CG + +F +++ R++ + + I + + G +A E F D+IE+GL PD F
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF 574
Query: 411 SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470
L AC HGGLV G+EIF M + +G+ + HY MV LLG AG LEEA I +P
Sbjct: 575 VGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMP 634
Query: 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMK 530
+ + +LL+ C + GN ++A A ++ P + V+LSN YA GRW+D+ K
Sbjct: 635 MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAK 694
Query: 531 LRDDIVDNGLRKEAGVSWV 549
+R + + GLRK G S +
Sbjct: 695 VRLSMKEKGLRKPPGTSSI 713
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 177/543 (32%), Positives = 285/543 (52%), Gaps = 2/543 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+ + S QS + ++ HALV K S D + T LV +Y ++ +F P+R+
Sbjct: 124 IFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERN 183
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-PGL-RFV 126
+ W++++ YA R +A +F LR + + + Y S + + GL R +
Sbjct: 184 TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQI 243
Query: 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186
H I +GL S+ALVT YSK ++EA K+FD D + + ++M++G++ G
Sbjct: 244 HCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGES 303
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246
++++LF M G P EYT+VG+++ + L G+ +H F LK F+ + + ++ L
Sbjct: 304 LEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTAL 363
Query: 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
V MYA+ C+ A F+ L D+ W++LI+GY Q D +AL +R++ G +
Sbjct: 364 VDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPND 423
Query: 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
+ASVL A + A + G +HG+ I+HGF L V + SAL MYSKCG L G VF
Sbjct: 424 PTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRR 483
Query: 367 MSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426
++++++N++I GL +G +A E F +++ +G+ PD+ TF ++ AC H G V G
Sbjct: 484 TPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG 543
Query: 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486
F M+++ G+ K +HY MV LL AG L+EA FI S + LLS C
Sbjct: 544 WFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACK 603
Query: 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546
+G +L +L R+ + V LS Y GR DV ++ + NG+ KE G
Sbjct: 604 NHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGC 663
Query: 547 SWV 549
SW+
Sbjct: 664 SWI 666
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 172/542 (31%), Positives = 296/542 (54%), Gaps = 9/542 (1%)
Query: 13 SKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLW 72
S +H++ + K++HA + L F TKL+ + + AR +FD P+ +F W
Sbjct: 30 SATHKA--QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPW 87
Query: 73 NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIV 132
N+IIR Y+ + F DA ++ N+ ++ PD+FT+ + +ACS S L RFVH
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 133 SGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPD--LVLCNSMISGFAHCGFWDKSL 190
G D + L+ Y+K + A VF+G+ P+ +V +++S +A G ++L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 191 QLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMY 250
++F M ++ PD LV +++ L G+ IH +K + + L +MY
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 251 ARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
A+C + +A +F+ + P+L+ W+A+I+GY++ G +A+ F ++ + + D + I
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER 370
S ++A A+ ++ ++ YV + + V +SSAL+DM++KCG + VF+ +R
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387
Query: 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430
+++ ++++I+G GLHG +A +R + G++P++ TF LL AC H G+V +G F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447
Query: 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS--GALLSCCHIY 488
RM ++ I + +HY ++ LLG AG+L++AY I + PV P V+ GALLS C +
Sbjct: 448 NRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCM--PVQPGVTVWGALLSACKKH 504
Query: 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSW 548
+ +L E A QLF DP + V LSN YA WD V ++R + + GL K+ G SW
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 549 VS 550
V
Sbjct: 565 VE 566
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 554 | ||||||
| 118488703 | 553 | unknown [Populus trichocarpa] | 0.990 | 0.992 | 0.645 | 0.0 | |
| 225456926 | 560 | PREDICTED: putative pentatricopeptide re | 0.978 | 0.967 | 0.640 | 0.0 | |
| 147834109 | 560 | hypothetical protein VITISV_003709 [Viti | 0.978 | 0.967 | 0.638 | 0.0 | |
| 449440993 | 549 | PREDICTED: putative pentatricopeptide re | 0.990 | 1.0 | 0.612 | 0.0 | |
| 356518950 | 551 | PREDICTED: putative pentatricopeptide re | 0.994 | 1.0 | 0.599 | 0.0 | |
| 357461849 | 553 | hypothetical protein MTR_3g077200 [Medic | 0.994 | 0.996 | 0.586 | 0.0 | |
| 15222662 | 552 | pentatricopeptide repeat-containing prot | 0.983 | 0.987 | 0.543 | 1e-171 | |
| 297840043 | 552 | pentatricopeptide repeat-containing prot | 0.983 | 0.987 | 0.532 | 1e-167 | |
| 297733726 | 504 | unnamed protein product [Vitis vinifera] | 0.877 | 0.964 | 0.559 | 1e-166 | |
| 224135905 | 459 | predicted protein [Populus trichocarpa] | 0.808 | 0.976 | 0.641 | 1e-165 |
| >gi|118488703|gb|ABK96162.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/550 (64%), Positives = 426/550 (77%), Gaps = 1/550 (0%)
Query: 1 MFFNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARIL 60
M L L+LSK+HQ+LSRTK+LHALV K LL+DPFYATKLVR YALNN L SAR L
Sbjct: 1 MLIKFQSLFLQLSKTHQTLSRTKQLHALVTKTHLLQDPFYATKLVRFYALNNDLSSARNL 60
Query: 61 FDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL 120
FDKTPQRSVFLWNSIIRAYA AH+F+DA L+ ++ + PD +TYAC+ RAC E+ +
Sbjct: 61 FDKTPQRSVFLWNSIIRAYAQAHKFDDAFLLYTKMIGFDVIPDKYTYACLIRACCEDFYV 120
Query: 121 PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGF 180
GLR VHGG IVSGLG DS+T SALVT YSK+ L+ EA KVF GV +PDLVL N+MISG
Sbjct: 121 DGLRIVHGGVIVSGLGLDSVTCSALVTGYSKMGLVGEASKVFCGVFEPDLVLWNAMISGC 180
Query: 181 AHCGFWDKSLQLFDWMLRLG-KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSY 239
+CGF DK L F+ M G K PD YT V LISGL S L +GQGIHG CLKS FD
Sbjct: 181 GYCGFGDKGLLFFNEMRDNGNKRPDGYTFVALISGLANSSSLELGQGIHGLCLKSGFDCN 240
Query: 240 DYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNM 299
D+V S LVSMY+R +C+N AY VF SL PDLVTWSALITG+SQ G++ KAL +++ LN+
Sbjct: 241 DHVGSSLVSMYSRFSCINLAYSVFRSLCQPDLVTWSALITGFSQAGEHEKALLFYKNLNL 300
Query: 300 QGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGL 359
GKK D VLIASVL A A+ ANV PGA IHGY++++GFE VMVSSAL+DMYSKCG++GL
Sbjct: 301 AGKKPDSVLIASVLVATAQLANVGPGAQIHGYIVRYGFESHVMVSSALIDMYSKCGFVGL 360
Query: 360 GIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
G++VFE M RNI++YNS+I GLGLHG QAF+ F +I+EKGL PDESTFSALLCACCH
Sbjct: 361 GLRVFENMPNRNIVSYNSIISGLGLHGLASQAFDMFTEIVEKGLKPDESTFSALLCACCH 420
Query: 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSG 479
GLV DGREIF RM +E+ IQA+TEHY+++VKLLG+AG L+EAY+FI SL +PVD + G
Sbjct: 421 AGLVKDGREIFRRMKDEFWIQARTEHYVHIVKLLGMAGELDEAYNFILSLKQPVDSGIWG 480
Query: 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539
ALLSCC +G+S+LAEIVA QLF+ +P+KGAY+VMLSN YA DGRW DV K+RD I G
Sbjct: 481 ALLSCCDAHGDSELAEIVAQQLFDGEPKKGAYRVMLSNVYAGDGRWVDVEKMRDYITTAG 540
Query: 540 LRKEAGVSWV 549
K G+S +
Sbjct: 541 AEKMPGLSRI 550
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456926|ref|XP_002278116.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g64310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/542 (64%), Positives = 438/542 (80%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
L+ ELSK HQ+L RTK+LHA + + L DPFYAT+++R YA+N+ L SAR LFD T R
Sbjct: 14 LLFELSKIHQTLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSYR 73
Query: 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVH 127
SV+LWNS+IRAYA H+F+DA LF +LRT++KPD+FT+AC+ RAC+EN D GLR VH
Sbjct: 74 SVYLWNSVIRAYAGEHQFDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVH 133
Query: 128 GGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWD 187
GG +VSGLG DS+ SALVTAYSKL ++DEA +VF G+++PDLVL N+M +G+ +CGFWD
Sbjct: 134 GGVVVSGLGFDSVCGSALVTAYSKLCMVDEASRVFYGMAEPDLVLWNAMAAGYGYCGFWD 193
Query: 188 KSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLV 247
K LQLF M +G+ PD YT+VGLISGL +PSLL +G+GIHGFCLKSSFD D+V S LV
Sbjct: 194 KGLQLFSAMRSMGEQPDSYTMVGLISGLADPSLLGIGKGIHGFCLKSSFDCNDHVGSALV 253
Query: 248 SMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPV 307
SMY+RC+C+NSAY VF L PDLVTWSALITG S+ GDY KAL +FRK+NM+GK+ DP+
Sbjct: 254 SMYSRCHCLNSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFRKMNMEGKRVDPI 313
Query: 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETM 367
LIASVLAA+ +SA + PG+ IHGYV++HG E VM+SSAL+DMYSKCG++ LG++VF++M
Sbjct: 314 LIASVLAASGQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFDSM 373
Query: 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427
RN ++YNS+ILGLG+HG QAF+ F +++EKG PDESTFSALLC CCH GLV +GR
Sbjct: 374 PNRNTVSYNSMILGLGIHGLAPQAFKMFEEVLEKGFKPDESTFSALLCTCCHAGLVKNGR 433
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
EIF+RMTEE+ IQA+T+HY++MVKLLG+AG L+EAY I SL +PVD + GALLSCC+
Sbjct: 434 EIFSRMTEEFHIQARTDHYVHMVKLLGMAGELQEAYDLILSLQQPVDSGIWGALLSCCNF 493
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+GN +LAEIVA QLFEN P K AY+VMLSN YA D RWDDV KLRDDI + G++K G+S
Sbjct: 494 HGNPELAEIVAQQLFENKPEKSAYRVMLSNIYAGDDRWDDVKKLRDDIQEAGIKKMPGLS 553
Query: 548 WV 549
W+
Sbjct: 554 WI 555
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147834109|emb|CAN62187.1| hypothetical protein VITISV_003709 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/542 (63%), Positives = 435/542 (80%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
L+ ELSK HQSL RTK+LHA + + L DPFYAT+++R YA+N+ L SAR LFD T R
Sbjct: 14 LLFELSKIHQSLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSHR 73
Query: 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVH 127
SV+LWNS+IRAYA H+F+DA LF +LRT++KPD+FT+AC+ RAC+EN D GLR VH
Sbjct: 74 SVYLWNSVIRAYAGEHQFDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVH 133
Query: 128 GGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWD 187
GG +VSGLG DS+ SALVTAYSKL ++DEA +VF G+++ DLVL N+M +G+ +CGFWD
Sbjct: 134 GGVVVSGLGFDSVCGSALVTAYSKLCMVDEASRVFYGMAEQDLVLWNAMAAGYGYCGFWD 193
Query: 188 KSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLV 247
K LQLF M +G+ PD YT+VGLISGL +P+LL +G+GIHGFCLKSSFD +V S LV
Sbjct: 194 KGLQLFSAMRSMGEQPDSYTMVGLISGLADPNLLGIGKGIHGFCLKSSFDCNAHVGSALV 253
Query: 248 SMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPV 307
SMY+RC+C+NSAY VF L PDLVTWSALITG S+ GDY KAL +FRK+NM+GK+ DP+
Sbjct: 254 SMYSRCHCLNSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFRKMNMEGKRVDPI 313
Query: 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETM 367
LI SVLAA+ +SA + PG+ IHGYV++HG E VM+SSAL+DMYSKCG++ LG++VF++M
Sbjct: 314 LIXSVLAASGQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFDSM 373
Query: 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427
RN ++YNS+ILGLG+HG QAF+ F +++EKG PDESTFSALLC CCH GLVNDGR
Sbjct: 374 PNRNTVSYNSMILGLGIHGLAXQAFKMFEEVLEKGFKPDESTFSALLCTCCHAGLVNDGR 433
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
EIF+RMTEE+ IQA+TEHY++MVKLLG+AG L+EAY I SL +P D + GALLSCC+
Sbjct: 434 EIFSRMTEEFHIQARTEHYVHMVKLLGMAGELQEAYDLILSLQQPADSGIWGALLSCCNF 493
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+GNS+LA IVA QLFEN P K AY+VMLSN YA D RWDDV KLRDDI + G++K G+S
Sbjct: 494 HGNSELAXIVAQQLFENKPEKSAYRVMLSNIYAGDXRWDDVKKLRDDIQEAGIKKMPGLS 553
Query: 548 WV 549
W+
Sbjct: 554 WI 555
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440993|ref|XP_004138268.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g64310-like [Cucumis sativus] gi|449523770|ref|XP_004168896.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g64310-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/549 (61%), Positives = 414/549 (75%)
Query: 1 MFFNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARIL 60
M FNLH L ELSKS +L RTKELHA + K+ L DPFYAT++V+LY++N L AR L
Sbjct: 1 MSFNLHILTTELSKSFLTLLRTKELHAFITKSHLASDPFYATRIVKLYSINAKLGYARHL 60
Query: 61 FDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL 120
FDKTP RSV+LWNSIIRAYA A++F DA SLF + T+ PDNFTY+CI RACSEN
Sbjct: 61 FDKTPNRSVYLWNSIIRAYAKAYKFRDALSLFLTMSGTETSPDNFTYSCIIRACSENHHR 120
Query: 121 PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGF 180
L+FVHG +V+G G D I SALVTAYS L LI+EA KVF + PDLV+ NS+I GF
Sbjct: 121 EWLKFVHGRVLVTGFGLDPICCSALVTAYSNLDLIEEASKVFGRIQHPDLVMWNSIICGF 180
Query: 181 AHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD 240
CG+W++ L LF M LG+ PD YT+VG+ SG+ EPSLLS G+GIHG CLK +FDS +
Sbjct: 181 GSCGYWNQGLLLFSRMRNLGELPDGYTVVGVASGIAEPSLLSTGKGIHGLCLKCNFDSNE 240
Query: 241 YVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300
+V+S LVSMY+RCNCM+SAY VF+SL PDLVTWSALITGYSQ GD+ KA+ +F++LNMQ
Sbjct: 241 HVASALVSMYSRCNCMDSAYLVFSSLLQPDLVTWSALITGYSQAGDFRKAMLFFQRLNMQ 300
Query: 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
GKK D +LIAS+LAA A+S N+ G IHGYV++ G E + M+SS+L+DMYSKCGYL LG
Sbjct: 301 GKKMDSILIASILAATAQSTNIRHGIEIHGYVLRQGIESNEMISSSLIDMYSKCGYLSLG 360
Query: 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG 420
I+VF MS++NI TYNSVI GLGLHG +A E F +++ GL P+ESTFSALL ACCH
Sbjct: 361 IRVFHVMSQKNISTYNSVIWGLGLHGLASKALEMFEELLTIGLVPNESTFSALLFACCHA 420
Query: 421 GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA 480
GL + G+EIF RM +E+ I+ KTEHY+Y+VKLLG+ G LE AY+ + SLP+P D + GA
Sbjct: 421 GLNSVGKEIFKRMKDEFCIKYKTEHYVYIVKLLGMTGELEVAYNLVMSLPEPADSGIWGA 480
Query: 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540
LLSCC GN +LAE+VA +L ENDP K YKVMLSN YA DGRWDDV KLRD + +
Sbjct: 481 LLSCCDACGNVELAEVVAQRLIENDPEKTVYKVMLSNIYAGDGRWDDVKKLRDTMTEKER 540
Query: 541 RKEAGVSWV 549
K G+SW+
Sbjct: 541 GKCPGLSWI 549
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518950|ref|XP_003528138.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g64310-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 405/552 (73%), Gaps = 1/552 (0%)
Query: 1 MFFNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARIL 60
M +L EL+ +SL R K+LHA + K L +DPFYATK+VRLYA NN + SA L
Sbjct: 1 MLIPFEWLHCELNNICKSLLRAKQLHAFLLKTHLSQDPFYATKIVRLYAANNDINSAHHL 60
Query: 61 FDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL 120
FDKTP RSV+LWNS+IRA+A + RF +A SLF+ +L + PD TYAC+ RAC+ N D
Sbjct: 61 FDKTPNRSVYLWNSMIRAFAQSQRFFNAISLFRTMLGADISPDGHTYACVIRACANNFDF 120
Query: 121 PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGF 180
LR VHGGA+ +GLGRD + SALV AYSKL L+ EA +VFDG+++PDLVL NS+ISG+
Sbjct: 121 GMLRRVHGGAVAAGLGRDPVCCSALVAAYSKLGLVHEARRVFDGIAEPDLVLWNSLISGY 180
Query: 181 AHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD 240
G WD +Q+F M G PD YTL GL+ G+ + +LS+GQG+H KS DS
Sbjct: 181 GGFGLWDVGMQMFSMMRLFGMKPDGYTLAGLLVGIADSGMLSIGQGLHCLSQKSGLDSDS 240
Query: 241 YVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300
+V S+L+SMY+RC M SAY VF S+ +PDLVTWSALI GYSQ G+Y K L +FRKLNM+
Sbjct: 241 HVGSLLLSMYSRCKHMASAYRVFCSILNPDLVTWSALIVGYSQSGEYEKVLLFFRKLNME 300
Query: 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
KK D VLIASVLA+ A+ ANV G +HGY ++HG EL V VSSALVDMYSKCG+L LG
Sbjct: 301 SKKPDSVLIASVLASIAQMANVGLGCEVHGYALRHGLELDVRVSSALVDMYSKCGFLHLG 360
Query: 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG 420
I VF M ERNI+++NSVILG GLHG +AF F ++EKGL PDE+TFS+LLCACCH
Sbjct: 361 ICVFRVMPERNIVSFNSVILGFGLHGCASEAFRMFDKMLEKGLVPDEATFSSLLCACCHA 420
Query: 421 GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA 480
GLV DGREIF RM E+ I+A+ EHY+YMVKLLG AG LEEAY+ SLP+PVD A+ GA
Sbjct: 421 GLVKDGREIFQRMKHEFNIRARPEHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGA 480
Query: 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540
LLSCC+I GNS+LAE VAHQLFE+ P Y+VMLSN YA DGRWDDV KLRD++ G
Sbjct: 481 LLSCCNICGNSELAETVAHQLFESSPADNVYRVMLSNIYAGDGRWDDVKKLRDNMT-GGP 539
Query: 541 RKEAGVSWVSGS 552
RK G+SW+ GS
Sbjct: 540 RKMPGLSWIDGS 551
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461849|ref|XP_003601206.1| hypothetical protein MTR_3g077200 [Medicago truncatula] gi|355490254|gb|AES71457.1| hypothetical protein MTR_3g077200 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/552 (58%), Positives = 406/552 (73%), Gaps = 1/552 (0%)
Query: 1 MFFNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARIL 60
M H+L EL+ +SL R K+LHA + K L +DPFYAT+++RLYA NN + A +
Sbjct: 1 MLTQFHWLHSELTNVCKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFNNHINYAHHV 60
Query: 61 FDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL 120
FDKT RSVFLWNS+IRA+A A RF++A SLF+ +L ++PDN+TYAC RAC+++ D
Sbjct: 61 FDKTSTRSVFLWNSMIRAFAKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDF 120
Query: 121 PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGF 180
LR VHG A+ GLG D I SALV+AYSKL ++ EA +VFDG+ +PDLVL NS+IS +
Sbjct: 121 GMLRVVHGSAVSVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAY 180
Query: 181 AHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD 240
G W+ +Q+F M GK PD +TL GL+ G+ + SLLS+GQ +HG KS DS
Sbjct: 181 GGSGMWEIGIQMFSSMRLAGKKPDGFTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDC 240
Query: 241 YVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300
+V S+LVSMY+RC C++SAY VF +F+PDLVTWSALI+GYSQ G+Y KAL +FRKLNM+
Sbjct: 241 HVGSLLVSMYSRCKCIDSAYRVFCGIFNPDLVTWSALISGYSQCGEYQKALLFFRKLNMK 300
Query: 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
KK D VLIA+VLA+ + ANV PG IHGYV++HG E V VSSAL+DMYSKCG+L LG
Sbjct: 301 SKKLDSVLIATVLASITQMANVLPGCEIHGYVLRHGLESDVKVSSALIDMYSKCGFLHLG 360
Query: 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG 420
VF M ERNII+YNS+IL GLHG QAF F ++++KGL PDE TFSALL ACCH
Sbjct: 361 TCVFRIMLERNIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACCHA 420
Query: 421 GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA 480
GLV DGRE+F RM +E+ I+A+ EHY+YMVKLLG G LEEAY+ SLPKPVD A+ GA
Sbjct: 421 GLVKDGRELFWRMKDEFNIKARPEHYVYMVKLLGGVGELEEAYNLTQSLPKPVDKAILGA 480
Query: 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540
LLSCC YGNS+LAE VA Q+F+++P Y+VMLSN YA DGRWDDV KLRD +V G
Sbjct: 481 LLSCCDSYGNSELAETVAQQIFKSNPADNVYRVMLSNIYAGDGRWDDVKKLRDKMV-GGQ 539
Query: 541 RKEAGVSWVSGS 552
+K GVSW+ GS
Sbjct: 540 KKMRGVSWIEGS 551
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222662|ref|NP_176613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169396|sp|Q9C7V5.1|PP104_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g64310 gi|12323481|gb|AAG51720.1|AC066689_19 hypothetical protein; 77621-75963 [Arabidopsis thaliana] gi|332196104|gb|AEE34225.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 297/546 (54%), Positives = 385/546 (70%), Gaps = 1/546 (0%)
Query: 4 NLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDK 63
L ++ E ++ Q+ T++LH+ V K+ L RDP++AT+L R YALN+ L SAR LFD
Sbjct: 6 QLRLIIYEFTRKIQTRLNTQKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDV 65
Query: 64 TPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123
P+RSVFLWNSIIRAYA AH+F SLF +LR+ +PDNFTYAC+ R SE+ D GL
Sbjct: 66 FPERSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGL 125
Query: 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183
R +HG AIVSGLG D I SA+V AYSK LI EA K+F + DPDL L N MI G+ C
Sbjct: 126 RCIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCC 185
Query: 184 GFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS 243
GFWDK + LF+ M G P+ YT+V L SGL +PSLL V +H FCLK + DS+ YV
Sbjct: 186 GFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVG 245
Query: 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK 303
LV+MY+RC C+ SA VFNS+ PDLV S+LITGYS+ G++ +AL+ F +L M GKK
Sbjct: 246 CALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKK 305
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363
D VL+A VL + A+ ++ G +H YVI+ G EL + V SAL+DMYSKCG L + +
Sbjct: 306 PDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSL 365
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
F + E+NI+++NS+ILGLGLHGF AFE F +I+E GL PDE TFSALLC CCH GL+
Sbjct: 366 FAGIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLL 425
Query: 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483
N G+EIF RM E+GI+ +TEHY+YMVKL+G+AG LEEA+ F+ SL KP+D + GALLS
Sbjct: 426 NKGQEIFERMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLS 485
Query: 484 CCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
CC ++ N+ LAE+VA + +N + R+ YKVMLSN YA GRWD+V +LRD I ++ K
Sbjct: 486 CCEVHENTHLAEVVAENIHKNGEERRSVYKVMLSNVYARYGRWDEVERLRDGISESYGGK 545
Query: 543 EAGVSW 548
G+SW
Sbjct: 546 LPGISW 551
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840043|ref|XP_002887903.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333744|gb|EFH64162.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/546 (53%), Positives = 388/546 (71%), Gaps = 1/546 (0%)
Query: 4 NLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDK 63
L ++ E S+ Q+ T++LH+ V K+ L RDP++AT+LVR YALN+ L SAR LFD
Sbjct: 6 QLRLIIYEFSRKFQTRLSTQKLHSFVTKSKLARDPYFATQLVRFYALNDDLVSARKLFDV 65
Query: 64 TPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123
P+RSVFLWNSIIRAYA A++F+ + SLF +L + +PDNFTYAC+ R SE+ D GL
Sbjct: 66 FPERSVFLWNSIIRAYAKAYQFSTSLSLFSQMLSSDTRPDNFTYACLARGFSESFDTEGL 125
Query: 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183
R VHG AI+SGLG D I SA+V AYSK LI EA K+F + DPDL L N MI G+ C
Sbjct: 126 RRVHGIAIMSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCC 185
Query: 184 GFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS 243
GFWDK + LF+ M G P+ YT+V L GL +PSLL + +HGFCLK + DS+ YV
Sbjct: 186 GFWDKGINLFNLMQHRGHLPNCYTMVALTIGLIDPSLLLIAWSVHGFCLKINLDSHSYVG 245
Query: 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK 303
LV+MY+RC C+ SA V+NS+ PDLV S+LITGYS+ G++ +AL+ F +L M GKK
Sbjct: 246 CALVNMYSRCWCIVSACSVYNSICEPDLVACSSLITGYSRCGNHKEALHMFAELRMSGKK 305
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363
D VL+A VL + A+ +N G +HGYVI+ G EL + V S L+DMYSKCG L + +
Sbjct: 306 PDCVLVAIVLGSCAELSNSVYGKKVHGYVIRLGLELDIKVCSGLIDMYSKCGLLDCAMSL 365
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
F + E+NI+++NS+ILGLGLHGF AFE F +++E GL PDE TFSALLC CCH GL+
Sbjct: 366 FAGIPEKNIVSFNSLILGLGLHGFASSAFEKFTEMLEMGLKPDEITFSALLCTCCHSGLL 425
Query: 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483
+ G++IF RM E+GI+ +TEHY+Y+VKL+G+AG LEEA+ F+ SL KP+D + GALLS
Sbjct: 426 DKGQDIFERMKSEFGIKPQTEHYVYIVKLMGMAGKLEEAFEFVMSLRKPIDSGILGALLS 485
Query: 484 CCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
CC ++ N+ LAE+VA ++ ++ + R+ YKVMLSN YA GRWD+V +LRD I ++ K
Sbjct: 486 CCEVHENTHLAEVVAEKIQKSGEERRSVYKVMLSNVYARYGRWDEVERLRDGISESFGGK 545
Query: 543 EAGVSW 548
G+SW
Sbjct: 546 LPGISW 551
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297733726|emb|CBI14973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 303/542 (55%), Positives = 385/542 (71%), Gaps = 56/542 (10%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
L+ ELSK HQ+L RTK+LHA + + L DPFYAT+++R YA+N+ L SAR LFD T R
Sbjct: 14 LLFELSKIHQTLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSYR 73
Query: 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVH 127
SV+LWNS+IRAYA H+F+DA LF +LRT++KPD+FT+AC+ RAC+EN D GLR VH
Sbjct: 74 SVYLWNSVIRAYAGEHQFDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVH 133
Query: 128 GGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWD 187
GG +VSGLG DS+ SALVTAYSKL ++DEA +VF G+++PDLVL N+M +G+ +CGFWD
Sbjct: 134 GGVVVSGLGFDSVCGSALVTAYSKLCMVDEASRVFYGMAEPDLVLWNAMAAGYGYCGFWD 193
Query: 188 KSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLV 247
K LQLF M +G+ PD YT+VGLISGL +PSLL +G+GIHGFCLKSSFD D+V S LV
Sbjct: 194 KGLQLFSAMRSMGEQPDSYTMVGLISGLADPSLLGIGKGIHGFCLKSSFDCNDHVGSALV 253
Query: 248 SMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPV 307
SMY+RC+C+NSAY VF L PDL+ L G + V
Sbjct: 254 SMYSRCHCLNSAYGVFTILSQPDLIHGYVLRHGLESE----------------------V 291
Query: 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETM 367
+I+S AL+DMYSKCG++ LG++VF++M
Sbjct: 292 MISS----------------------------------ALIDMYSKCGFVNLGVRVFDSM 317
Query: 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427
RN ++YNS+ILGLG+HG QAF+ F +++EKG PDESTFSALLC CCH GLV +GR
Sbjct: 318 PNRNTVSYNSMILGLGIHGLAPQAFKMFEEVLEKGFKPDESTFSALLCTCCHAGLVKNGR 377
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
EIF+RMTEE+ IQA+T+HY++MVKLLG+AG L+EAY I SL +PVD + GALLSCC+
Sbjct: 378 EIFSRMTEEFHIQARTDHYVHMVKLLGMAGELQEAYDLILSLQQPVDSGIWGALLSCCNF 437
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+GN +LAEIVA QLFEN P K AY+VMLSN YA D RWDDV KLRDDI + G++K G+S
Sbjct: 438 HGNPELAEIVAQQLFENKPEKSAYRVMLSNIYAGDDRWDDVKKLRDDIQEAGIKKMPGLS 497
Query: 548 WV 549
W+
Sbjct: 498 WI 499
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135905|ref|XP_002322190.1| predicted protein [Populus trichocarpa] gi|222869186|gb|EEF06317.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 288/449 (64%), Positives = 348/449 (77%), Gaps = 1/449 (0%)
Query: 102 PDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKV 161
PD +TYAC+ RAC E+ + GLR VHGG IVSGLG DS+T SALVT YSK+ L+ EA KV
Sbjct: 8 PDKYTYACLIRACCEDFYVDGLRIVHGGVIVSGLGLDSVTCSALVTGYSKMGLVGEASKV 67
Query: 162 FDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG-KTPDEYTLVGLISGLWEPSL 220
F GV +PDLVL N+MISG +CGF DK L F+ M G K PD YT V LISGL S
Sbjct: 68 FCGVFEPDLVLWNAMISGCGYCGFGDKGLLFFNEMRDNGNKRPDGYTFVALISGLANSSS 127
Query: 221 LSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITG 280
L +GQGIHG CLKS FD D+V S LVSMY+R +C+N AY VF SL PDLVTWSALITG
Sbjct: 128 LELGQGIHGLCLKSGFDCNDHVGSSLVSMYSRFSCINLAYSVFRSLCQPDLVTWSALITG 187
Query: 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELS 340
+SQ G++ KAL +++ LN+ GKK D VLIASVL A A+ ANV PGA IHGY++++GFE
Sbjct: 188 FSQAGEHEKALLFYKNLNLAGKKPDSVLIASVLVATAQLANVGPGAQIHGYIVRYGFESH 247
Query: 341 VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE 400
VMVSSAL+DMYSKCG++GLG++VFE M RNI++YNS+I GLGLHG QAF+ F +I+E
Sbjct: 248 VMVSSALIDMYSKCGFVGLGLRVFENMPNRNIVSYNSIISGLGLHGLASQAFDMFTEIVE 307
Query: 401 KGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460
KGL PDESTFSALLCACCH GLV DGREIF RM +E+ IQA+TEHY+++VKLLG+AG L+
Sbjct: 308 KGLKPDESTFSALLCACCHAGLVKDGREIFRRMKDEFWIQARTEHYVHIVKLLGMAGELD 367
Query: 461 EAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520
EAY+FI SL +PVD + GALLSCC +G+S+LAEIVA QLF+ +P+KGAY+VMLSN YA
Sbjct: 368 EAYNFILSLKQPVDSGIWGALLSCCDAHGDSELAEIVAQQLFDGEPKKGAYRVMLSNVYA 427
Query: 521 EDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
DGRW DV K+RD I G K G+S +
Sbjct: 428 GDGRWVDVEKMRDYITTAGAEKMPGLSRI 456
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 554 | ||||||
| TAIR|locus:2014270 | 552 | AT1G64310 [Arabidopsis thalian | 0.981 | 0.985 | 0.522 | 3.8e-149 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.976 | 0.631 | 0.309 | 1.8e-78 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.541 | 0.430 | 0.352 | 1.2e-75 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.976 | 0.668 | 0.327 | 4.6e-73 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.969 | 0.616 | 0.318 | 5.9e-73 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.983 | 0.530 | 0.310 | 8.5e-72 | |
| TAIR|locus:2063771 | 689 | AT2G03380 [Arabidopsis thalian | 0.954 | 0.767 | 0.311 | 3.7e-71 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.938 | 0.631 | 0.324 | 4.3e-70 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.503 | 0.367 | 0.377 | 2.2e-69 | |
| TAIR|locus:2057630 | 727 | AT2G33680 "AT2G33680" [Arabido | 0.976 | 0.744 | 0.309 | 4.9e-69 |
| TAIR|locus:2014270 AT1G64310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 285/545 (52%), Positives = 366/545 (67%)
Query: 5 LHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKT 64
L ++ E ++ Q+ T++LH+ V K+ L RDP++AT+L R YALN+ L SAR LFD
Sbjct: 7 LRLIIYEFTRKIQTRLNTQKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDVF 66
Query: 65 PQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLR 124
P+RSVFLWNSIIRAYA AH+F SLF +LR+ +PDNFTYAC+ R SE+ D GLR
Sbjct: 67 PERSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGLR 126
Query: 125 FVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCG 184
+HG AIVSGLG D I SA+V AYSK LI EA K+F + DPDL L N MI G+ CG
Sbjct: 127 CIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCG 186
Query: 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKXXXXXXXXXXX 244
FWDK + LF+ M G P+ YT+V L SGL +PSLL V +H FCLK
Sbjct: 187 FWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGC 246
Query: 245 XXXXMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKA 304
MY+RC C+ SA VFNS+ PDLV S+LITGYS+ G++ +AL+ F +L M GKK
Sbjct: 247 ALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKP 306
Query: 305 DPXXXXXXXXXXXXXXNVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVF 364
D + G +H YVI+ G EL + V SAL+DMYSKCG L + +F
Sbjct: 307 DCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLF 366
Query: 365 ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424
+ E+NI+++NS+ILGLGLHGF AFE F +I+E GL PDE TFSALLC CCH GL+N
Sbjct: 367 AGIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLN 426
Query: 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSC 484
G+EIF RM E+GI+ +TEHY+YMVKL+G+AG LEEA+ F+ SL KP+D + GALLSC
Sbjct: 427 KGQEIFERMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLSC 486
Query: 485 CHIYGNSDLAEIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543
C ++ N+ LAE+VA + +N + R+ YKVMLSN YA GRWD+V +LRD I ++ K
Sbjct: 487 CEVHENTHLAEVVAENIHKNGEERRSVYKVMLSNVYARYGRWDEVERLRDGISESYGGKL 546
Query: 544 AGVSW 548
G+SW
Sbjct: 547 PGISW 551
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 168/542 (30%), Positives = 281/542 (51%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL + S + +LH LV + + + L+ +Y+ A LF +
Sbjct: 245 VLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRAD 304
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
WN +I Y + ++ + F ++ + + PD T++ + + S+ +L + +H
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHC 364
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ + D +SAL+ AY K + A +F + D+V+ +MISG+ H G +
Sbjct: 365 YIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYID 424
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKXXXXXXXXXXXXXXX 248
SL++F W++++ +P+E TLV ++ + L +G+ +HGF +K
Sbjct: 425 SLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVID 484
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPXX 308
MYA+C MN AY +F L D+V+W+++IT +Q + A+ FR++ + G D
Sbjct: 485 MYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVS 544
Query: 309 XXXXXXXXXXXXNVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
+ G IHG++I+H V S L+DMY+KCG L + VF+TM
Sbjct: 545 ISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK 604
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCACCHGGLVNDGR 427
E+NI+++NS+I G HG + F +++EK G+ PD+ TF ++ +CCH G V++G
Sbjct: 605 EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGV 664
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
F MTE+YGIQ + EHY +V L G AG L EAY + S+P P D V G LL C +
Sbjct: 665 RFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+ N +LAE+ + +L + DP Y V++SN +A W+ V K+R + + ++K G S
Sbjct: 725 HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYS 784
Query: 548 WV 549
W+
Sbjct: 785 WI 786
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 108/306 (35%), Positives = 166/306 (54%)
Query: 250 YARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPXXX 309
YA +A +F + ++V+W+ALI GY+Q G+ +AL F L +
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSF 389
Query: 310 XXXXXXXXXXXNVWPGAVIHGYVIQHGFELS------VMVSSALVDMYSKCGYLGLGIQV 363
+ G H +V++HGF+ + V ++L+DMY KCG + G V
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 449
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
F M ER+ +++N++I+G +G+ +A E FR+++E G PD T +L AC H G V
Sbjct: 450 FRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFV 509
Query: 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483
+GR F+ MT ++G+ +HY MV LLG AG LEEA S I +P D + G+LL+
Sbjct: 510 EEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLA 569
Query: 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543
C ++ N L + VA +L E +P V+LSN YAE G+W+DVM +R + G+ K+
Sbjct: 570 ACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQ 629
Query: 544 AGVSWV 549
G SW+
Sbjct: 630 PGCSWI 635
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 181/552 (32%), Positives = 285/552 (51%)
Query: 3 FNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFD 62
+N +L L++ L KE+H L+ K+ D F T L +YA + AR +FD
Sbjct: 136 YNFTYL-LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194
Query: 63 KTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPG 122
+ P+R + WN+I+ Y+ A + K++ LKP T + A S +
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 123 LRFVHGGAIVSGLGRDSIT--SSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGF 180
+ +HG A+ SG DS+ S+ALV Y+K ++ A ++FDG+ + ++V NSMI +
Sbjct: 255 GKEIHGYAMRSGF--DSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 181 AHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKXXXXXXX 240
+++ +F ML G P + +++G + + L G+ IH ++
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372
Query: 241 XXXXXXXXMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300
MY +C +++A +F L LV+W+A+I G++Q G AL YF ++ +
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432
Query: 301 GKKADPXXXXXXXXXXXXXXNVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
K D IHG V++ + +V V++ALVDMY+KCG + +
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCH 419
+F+ MSER++ T+N++I G G HGF A E F ++ +KG + P+ TF +++ AC H
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM-QKGTIKPNGVTFLSVISACSH 551
Query: 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS- 478
GLV G + F M E Y I+ +HY MV LLG AG L EA+ FI +P V PAV+
Sbjct: 552 SGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMP--VKPAVNV 609
Query: 479 -GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537
GA+L C I+ N + AE A +LFE +P G Y V+L+N Y W+ V ++R ++
Sbjct: 610 YGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLR 669
Query: 538 NGLRKEAGVSWV 549
GLRK G S V
Sbjct: 670 QGLRKTPGCSMV 681
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 173/543 (31%), Positives = 280/543 (51%)
Query: 12 LSKSHQSLSRT---KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+SKS SL ++LH + K+ LV Y N + SAR +FD+ +R
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD 260
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
V WNSII Y S+F +L + ++ D T + C+++ + R VH
Sbjct: 261 VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ + R+ + L+ YSK +D A VF +SD +V SMI+G+A G +
Sbjct: 321 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKXXXXXXXXXXXXXXX 248
+++LF+ M G +PD YT+ +++ LL G+ +H + +
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPXX 308
MYA+C M A VF+ + D+++W+ +I GYS+ +AL F L ++ K+ P
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL-LEEKRFSPDE 499
Query: 309 XXXXXXXXX-XXXNVWP-GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
+ + G IHGY++++G+ V+++LVDMY+KCG L L +F+
Sbjct: 500 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD 559
Query: 367 MSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426
++ ++++++ +I G G+HGF +A F + + G+ DE +F +LL AC H GLV++G
Sbjct: 560 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619
Query: 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486
F M E I+ EHY +V +L G+L +AY FI ++P P D + GALL C
Sbjct: 620 WRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCR 679
Query: 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546
I+ + LAE VA ++FE +P Y V+++N YAE +W+ V +LR I GLRK G
Sbjct: 680 IHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGC 739
Query: 547 SWV 549
SW+
Sbjct: 740 SWI 742
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 8.5e-72, P = 8.5e-72
Identities = 171/550 (31%), Positives = 273/550 (49%)
Query: 3 FNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFD 62
F L+ + SH L + H+++ K L ++ F LV +YA L AR +F+
Sbjct: 429 FTFTSLLSTCAASHD-LEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFE 487
Query: 63 KTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPG 122
+ R WN+II +Y ++A LFK + + D A +AC+ L
Sbjct: 488 RMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQ 547
Query: 123 LRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAH 182
+ VH ++ GL RD T S+L+ YSK +I +A KVF + + +V N++I+G++
Sbjct: 548 GKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ 607
Query: 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKXXXXXXXXX 242
++++ LF ML G P E T ++ +P L++G HG K
Sbjct: 608 NNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEY 666
Query: 243 XXXXXX-MYARCNCMNSAYHVFNSLFHP-DLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300
MY M A +F+ L P +V W+ +++G+SQ G Y +AL +++++
Sbjct: 667 LGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHD 726
Query: 301 GKKADPXXXXXXXXXXXXXXNVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
G D ++ G IH + +L + S+ L+DMY+KCG +
Sbjct: 727 GVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGS 786
Query: 361 IQVFETMSER-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
QVF+ M R N++++NS+I G +G+ A + F + + + PDE TF +L AC H
Sbjct: 787 SQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSH 846
Query: 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSG 479
G V+DGR+IF M +YGI+A+ +H MV LLG G L+EA FI + D +
Sbjct: 847 AGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWS 906
Query: 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539
+LL C I+G+ EI A +L E +P+ + V+LSN YA G W+ LR + D G
Sbjct: 907 SLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRG 966
Query: 540 LRKEAGVSWV 549
++K G SW+
Sbjct: 967 VKKVPGYSWI 976
|
|
| TAIR|locus:2063771 AT2G03380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 166/533 (31%), Positives = 272/533 (51%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
Q L K++H + K D T L+ +YA + SA +F+ R+V W S+I
Sbjct: 156 QDLDNGKKIHCQLVKVPSF-DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMI 214
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
Y + LF + + + +TY + AC++ S L ++ HG + SG+
Sbjct: 215 AGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIE 274
Query: 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
S ++L+ Y K I A +VF+ S DLV+ +MI G+ H G +++L LF M
Sbjct: 275 LSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKM 334
Query: 197 LRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKXXXXXXXXXXXXXXXMYARCNCM 256
+ P+ T+ ++SG L +G+ +HG +K MYA+C
Sbjct: 335 KGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALVH-MYAKCYQN 393
Query: 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPXXXXXXXXXX 316
A +VF D+V W+++I+G+SQ G +AL+ F ++N + +
Sbjct: 394 RDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSAC 453
Query: 317 XXXXNVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIIT 374
++ G+ +H Y ++ GF SV V +AL+D Y+KCG +F+T+ E+N IT
Sbjct: 454 ASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTIT 513
Query: 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMT 434
++++I G G G T + E F ++++K P+ESTF+++L AC H G+VN+G++ F+ M
Sbjct: 514 WSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMY 573
Query: 435 EEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA 494
++Y T+HY MV +L AG LE+A I +P D GA L C ++ DL
Sbjct: 574 KDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLG 633
Query: 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
EIV ++ + P +Y V++SN YA DGRW+ ++R+ + GL K AG S
Sbjct: 634 EIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHS 686
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 172/530 (32%), Positives = 272/530 (51%)
Query: 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAH 83
++H L K + D + A L+ LY+ + +ARILFD+ P R + WN++I Y +
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230
Query: 84 RFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSS 143
+A +L N LR D+ T + AC+E D +H +I GL + S+
Sbjct: 231 NAKEALTL-SNGLRAM---DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286
Query: 144 ALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT- 202
L+ Y++ + + KVFD + DL+ NS+I + +++ LF M RL +
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM-RLSRIQ 345
Query: 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCL-KXXXXXXXXXXXXXXXMYARCNCMNSAYH 261
PD TL+ L S L + + + + GF L K MYA+ ++SA
Sbjct: 346 PDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 405
Query: 262 VFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KADPXXXXXXXXXXXXXX 320
VFN L + D+++W+ +I+GY+Q G +A+ + + +G+ A+
Sbjct: 406 VFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAG 465
Query: 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVIL 380
+ G +HG ++++G L V V ++L DMY KCG L + +F + N + +N++I
Sbjct: 466 ALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIA 525
Query: 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440
G HG +A F++++++G+ PD TF LL AC H GLV++G+ F M +YGI
Sbjct: 526 CHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGIT 585
Query: 441 AKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500
+HY MV + G AG LE A FI S+ D ++ GALLS C ++GN DL +I +
Sbjct: 586 PSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEH 645
Query: 501 LFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
LFE +P Y V+LSN YA G+W+ V ++R GLRK G W S
Sbjct: 646 LFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG--WSS 693
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 2.2e-69, Sum P(2) = 2.2e-69
Identities = 106/281 (37%), Positives = 158/281 (56%)
Query: 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPXXXXXXXXXXXXXXNVWPGAVIH 329
++V+W+++I G +Q G +AL FR++ + G K + + G H
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTY 389
G+ ++ +V V SAL+DMY+KCG + L VF M +N++ +NS++ G +HG
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAK 471
Query: 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM 449
+ F ++ L PD +F++LL AC GL ++G + F M+EEYGI+ + EHY M
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCM 531
Query: 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK- 508
V LLG AG L+EAY I +P D V GALL+ C + N DLAEI A +LF +P
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
G Y V+LSN YA G W +V +R+ + GL+K G SW+
Sbjct: 592 GTY-VLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631
|
|
| TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 168/543 (30%), Positives = 269/543 (49%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+ + S QS + ++ HALV K S D + T LV +Y ++ +F P+R+
Sbjct: 124 IFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERN 183
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-PGL-RFV 126
+ W++++ YA R +A +F LR + + + Y S + + GL R +
Sbjct: 184 TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQI 243
Query: 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186
H I +GL S+ALVT YSK ++EA K+FD D + + ++M++G++ G
Sbjct: 244 HCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGES 303
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKXXXXXXXXXXXXX 246
++++LF M G P EYT+VG+++ + L G+ +H F LK
Sbjct: 304 LEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTAL 363
Query: 247 XXMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
MYA+ C+ A F+ L D+ W++LI+GY Q D +AL +R++ G +
Sbjct: 364 VDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPND 423
Query: 307 XXXXXXXXXXXXXXNVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
+ G +HG+ I+HGF L V + SAL MYSKCG L G VF
Sbjct: 424 PTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRR 483
Query: 367 MSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426
++++++N++I GL +G +A E F +++ +G+ PD+ TF ++ AC H G V G
Sbjct: 484 TPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG 543
Query: 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486
F M+++ G+ K +HY MV LL AG L+EA FI S + LLS C
Sbjct: 544 WFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACK 603
Query: 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546
+G +L +L R+ + V LS Y GR DV ++ + NG+ KE G
Sbjct: 604 NHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGC 663
Query: 547 SWV 549
SW+
Sbjct: 664 SWI 666
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C7V5 | PP104_ARATH | No assigned EC number | 0.5439 | 0.9837 | 0.9873 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 554 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-108 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-76 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-62 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 342 bits (880), Expect = e-108
Identities = 176/531 (33%), Positives = 282/531 (53%), Gaps = 2/531 (0%)
Query: 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRA 78
L+R +E+HA V + D L+ +Y + SAR++FD+ P+R WN++I
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 79 YALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD 138
Y + LF + + PD T + AC D R +HG + +G D
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 139 SITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR 198
++L+ Y L EA KVF + D V +MISG+ G DK+L+ + M +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 199 LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258
+PDE T+ ++S L VG +H + SY V++ L+ MY++C C++
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318
A VF+++ D+++W+++I G +AL +FR++ + K + V + + L+A A+
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACAR 501
Query: 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSV 378
+ G IH +V++ G + +AL+D+Y +CG + F E++++++N +
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNIL 560
Query: 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438
+ G HG A E F ++E G+NPDE TF +LLCAC G+V G E F M E+Y
Sbjct: 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620
Query: 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVA 498
I +HY +V LLG AG L EAY+FI +P DPAV GALL+ C I+ + +L E+ A
Sbjct: 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680
Query: 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
+FE DP Y ++L N YA+ G+WD+V ++R + +NGL + G SWV
Sbjct: 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 254 bits (649), Expect = 4e-76
Identities = 134/480 (27%), Positives = 230/480 (47%), Gaps = 9/480 (1%)
Query: 76 IRAYALAHRFNDAKSLFKNL-LRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG 134
I R +A LF+ L TY + AC + ++ V+ SG
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 135 LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFD 194
D + ++ + K ++ +A ++FD + + +L ++I G G + ++ LF
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 195 WMLRLGKTPDEYTLVGLI---SGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA 251
M G + T V ++ +GL GQ +H LK+ +VS L+ MY+
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLG---SARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270
Query: 252 RCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIAS 311
+C + A VF+ + V W++++ GY+ G +AL + ++ G D +
Sbjct: 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 312 VLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERN 371
++ ++ A + H +I+ GF L ++ ++ALVD+YSK G + VF+ M +N
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
Query: 372 IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431
+I++N++I G G HG +A E F +I +G+ P+ TF A+L AC + GL G EIF
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 432 RMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNS 491
M+E + I+ + HY M++LLG G L+EAY+ I P + ALL+ C I+ N
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510
Query: 492 DLAEIVAHQLFENDPRK-GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
+L + A +L+ P K Y V+L N Y GR + K+ + + GL +W+
Sbjct: 511 ELGRLAAEKLYGMGPEKLNNYVVLL-NLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 8e-62
Identities = 120/370 (32%), Positives = 192/370 (51%), Gaps = 1/370 (0%)
Query: 60 LFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSD 119
+F K P+R +F WN ++ YA A F++A L+ +L ++PD +T+ C+ R C D
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 120 LPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISG 179
L R VH + G D +AL+T Y K + A VFD + D + N+MISG
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 180 FAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSY 239
+ G + L+LF M L PD T+ +IS +G+ +HG+ +K+ F
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 240 DYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNM 299
V + L+ MY A VF+ + D V+W+A+I+GY + G KAL + +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 300 QGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGL 359
D + IASVL+A A ++ G +H + G V+V++AL++MYSKC +
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 360 GIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
++VF + E+++I++ S+I GL L+ ++A FFR ++ L P+ T A L AC
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACAR 501
Query: 420 GGLVNDGREI 429
G + G+EI
Sbjct: 502 IGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 1e-35
Identities = 105/400 (26%), Positives = 192/400 (48%), Gaps = 27/400 (6%)
Query: 73 NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIV 132
NS +RA + A L +++ ++ D Y + R C E R V G+ V
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLC-EWK-----RAVEEGSRV 108
Query: 133 SGLGRDSITS------SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186
S S +A+++ + + + A VF + + DL N ++ G+A G++
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF 168
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246
D++L L+ ML G PD YT ++ L+ G+ +H ++ F+ V + L
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228
Query: 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
++MY +C + SA VF+ + D ++W+A+I+GY + G+ + L F M+ DP
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF--FTMRELSVDP 286
Query: 307 VL--IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVF 364
L I SV++A + G +HGYV++ GF + V V ++L+ MY G G +VF
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 365 ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424
M ++ +++ ++I G +G +A E + + + ++PDE T +++L AC G ++
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464
G ++ + + + Y+V +A L E YS
Sbjct: 407 VGVKL-------HELAERKGLISYVV----VANALIEMYS 435
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-34
Identities = 121/494 (24%), Positives = 207/494 (41%), Gaps = 80/494 (16%)
Query: 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLV----------RLYALNNVL-- 54
F +LE + T ALV L+ + Y +N VL
Sbjct: 110 FEILEAGCPFTLPAST--YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167
Query: 55 -------PSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTY 107
AR LFD+ P+R++ W +II A + +A +LF+ + + T+
Sbjct: 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
Query: 108 ACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD 167
+ RA + + +H + +G+ D+ S AL+ YSK I++A VFDG+ +
Sbjct: 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
Query: 168 PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGI 227
V NSM++G+A G+ +++L L+ M G + D++T +I +LL +
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 228 HGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDY 287
H +++ F ++ LV +Y++ M A +VF+ + +L++W+ALI GY G
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407
Query: 288 GKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSAL 347
KA+ F ++ +G + V +VL+A
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSA-------------------------------- 435
Query: 348 VDMYSKCGYLGL---GIQVFETMSERNIIT-----YNSVILGLGLHGFTYQAFEFFRDII 399
C Y GL G ++F++MSE + I Y +I LG G +A+ R
Sbjct: 436 ------CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR-- 487
Query: 400 EKGLNPDESTFSALLCAC-CHGGLVNDGREIFTRMTEE--YGIQA-KTEHYIYMVKLLGL 455
P + ++ALL AC H L R+ E YG+ K +Y+ ++ L
Sbjct: 488 -APFKPTVNMWAALLTACRIHKNLE------LGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540
Query: 456 AGNLEEAYSFIWSL 469
+G EA + +L
Sbjct: 541 SGRQAEAAKVVETL 554
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Query: 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA-- 326
P L T++ L++ + D AL R + G KAD L ++++ AKS V A
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV--DAMF 492
Query: 327 -VIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI----ITYNSVILG 381
V H V G E +V AL+D ++ G + + M +N+ + +N++I
Sbjct: 493 EVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 382 LGLHGFTYQAFEFFRDII--EKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439
G G +AF+ ++ ++PD T AL+ AC + G V+ +E++ +M EY I
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY-QMIHEYNI 610
Query: 440 QAKTEHYIYMVKLLGLAGNLEEAYS 464
+ E Y V G+ + A S
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALS 635
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 7e-10
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 168 PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGL 215
PD+V N++I G+ G +++L+LF+ M + G P+ YT LI GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 9e-10
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
+++TYN++I G G +A + F ++ ++G+ P+ T+S L+ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 16/279 (5%)
Query: 168 PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGI 227
D L ++IS A G D ++F M+ G + +T LI G ++ G
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529
Query: 228 HGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL------FHPDLVTWSALITGY 281
+G + V + L+S + ++ A+ V + PD +T AL+
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSV 341
+ G +A ++ ++ K P + + + ++ + I+ + + G +
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 342 MVSSALVDMYSKCGYLGLGIQVFETMSERN-------IITYNSVILGLGLHGFTYQAFEF 394
+ SALVD+ G+ G + FE + + ++Y+S++ +A E
Sbjct: 650 VFFSALVDV---AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
Query: 395 FRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRM 433
+ DI L P ST +AL+ A C G + E+ + M
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 42/212 (19%)
Query: 336 GFELSVMVSSALVDMYSKCGYLGLGIQVFETMS----ERNIITYNSVILGLGLHGFTYQA 391
G + + + L+ +K G + +VF M E N+ T+ ++I G G +A
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 392 FEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451
F + + K + PD F+AL+ AC G V+ ++ M E
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE--------------- 571
Query: 452 LLGLAGNLEEAYSFIWSLPKPVDP--AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509
P+DP GAL+ C G D A+ V + E + KG
Sbjct: 572 ------------------THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI-KG 612
Query: 510 AYKV--MLSNTYAEDGRWDDVMKLRDDIVDNG 539
+V + N+ ++ G WD + + DD+ G
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC 114
V +N++I Y + +A LF + + +KP+ +TY+ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 36/237 (15%)
Query: 246 LVSMYARCNCMNSAYHVF----NSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQG 301
L+S A+ +++ + VF N+ ++ T+ ALI G ++ G KA + + +
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE-LSVMVSS------------ALV 348
K D V+ ++++A +S GAV F+ L+ M + AL+
Sbjct: 538 VKPDRVVFNALISACGQS-----GAV------DRAFDVLAEMKAETHPIDPDHITVGALM 586
Query: 349 DMYSKCGYLGLGIQVFETMSERNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN 404
+ G + +V++ + E NI Y + G A + D+ +KG+
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
Query: 405 PDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461
PDE FSAL+ H G ++ EI ++ GI+ T Y L+G N +
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSY---SSLMGACSNAKN 699
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
PD+VT++ LI GY ++G +AL F + M+ + P
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNE--MKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 401 KGLNPDESTFSALLCACCHGGLVNDGREIFTRM 433
KGL PD T++ L+ C G V++ E+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 554 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.11 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.09 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.9 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.68 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.61 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.58 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.33 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.27 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.22 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.13 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.09 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.08 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.89 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.88 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.73 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.73 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.58 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.49 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.46 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.46 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.46 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.46 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.39 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.38 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.37 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.27 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.24 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.17 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.14 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.02 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.01 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.88 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.79 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.71 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.67 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.58 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.38 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.31 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.3 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.29 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.27 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.25 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.24 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.13 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.98 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.96 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.89 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.71 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.65 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.63 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.23 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.14 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.12 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.99 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.97 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.87 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.51 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.44 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.43 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.43 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.38 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.25 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.84 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.84 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.79 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.74 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.59 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.44 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.43 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.28 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.99 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.98 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.72 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.63 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.36 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.23 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.21 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.18 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.91 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.84 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.81 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.79 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.77 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.68 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 91.39 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.13 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 91.13 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.93 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.93 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.88 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.84 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.52 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.44 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.34 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.32 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 90.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.18 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.17 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.88 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 89.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.65 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.34 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.28 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.97 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.94 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.24 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.24 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.12 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.77 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.71 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.61 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.38 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.23 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.13 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.02 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.84 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.46 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.31 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 86.2 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.83 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.3 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 84.53 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.36 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.26 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.02 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.88 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.53 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.63 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.55 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.07 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.29 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.27 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.46 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 80.35 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.26 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 80.18 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-84 Score=678.52 Aligned_cols=536 Identities=33% Similarity=0.595 Sum_probs=521.5
Q ss_pred cchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhH
Q 045069 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLL 96 (554)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 96 (554)
+++..+++++..+.+.|+.||+.++|.|+.+|++.|++++|.++|++|+.||+.+||++|.+|++.|++++|+++|++|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34455567777777777778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHH
Q 045069 97 RTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSM 176 (554)
Q Consensus 97 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 176 (554)
+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+||.+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCCh
Q 045069 177 ISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCM 256 (554)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 256 (554)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999985 699999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
+.++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 496 (554)
|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+|+..+|.+|+.+|..+|+.+.++.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999965799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeeeecCCC
Q 045069 497 VAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGSSN 554 (554)
Q Consensus 497 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~ 554 (554)
..+++.+..|+++..|..|+++|...|+|++|.++.+.|.+.|++++||+|||+++|+
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999873
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-76 Score=619.94 Aligned_cols=532 Identities=26% Similarity=0.391 Sum_probs=501.0
Q ss_pred HHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 045069 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDA 88 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 88 (554)
++..+...+.+..+.+++..+.+.+..++...+|.++..|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|
T Consensus 92 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A 171 (857)
T PLN03077 92 LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171 (857)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHH
Confidence 33344444566677888888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCC
Q 045069 89 KSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDP 168 (554)
Q Consensus 89 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 168 (554)
+++|++|.+.|+.||..||+.++.+|+..+++..+.+++..|.+.|+.||..++++||.+|++.|++++|.++|++|+.+
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 251 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (554)
|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES 408 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 408 (554)
++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.+ ++.||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 5999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
||..++.+|++.|+.+.+.+++..+.+. |+.++..+++.++++|+++|+.++|.++|+++ .+|..+|+.++.+|.++
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAH 567 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHc
Confidence 9999999999999999999999999996 99999999999999999999999999998888 77888899999999999
Q ss_pred CChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHccCChhHHHHHHHHHh-hcCCccCC
Q 045069 489 GNSDLAEIVAHQLFEND-PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV-DNGLRKEA 544 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 544 (554)
|+.++|.++|++|.+.. .++..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 568 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999998888763 3455666777788888888888888888888 57777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=606.83 Aligned_cols=488 Identities=27% Similarity=0.449 Sum_probs=478.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcC-CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHH
Q 045069 66 QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ-LKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA 144 (554)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (554)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchh
Q 045069 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVG 224 (554)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 224 (554)
|+.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 045069 225 QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKA 304 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 304 (554)
.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|+.|.++|..+||.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHc
Q 045069 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGL 384 (554)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 384 (554)
|..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|++.|++++|.++|++|.+||+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998767999999999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 465 FIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
+++++...|+..+|..++.+|..+|+++.|..+++++.+..|++...|..|+.+|.+.|+|++|.+++++|.+.|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecCC
Q 045069 545 GVSWVSGSS 553 (554)
Q Consensus 545 ~~s~~~~~~ 553 (554)
|+|||+++|
T Consensus 564 g~s~i~~~~ 572 (697)
T PLN03081 564 ACTWIEVKK 572 (697)
T ss_pred CeeEEEECC
Confidence 999999876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=549.78 Aligned_cols=507 Identities=17% Similarity=0.208 Sum_probs=444.8
Q ss_pred hcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc
Q 045069 32 ASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS-----VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT 106 (554)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 106 (554)
....++...|..++..+++.|++++|.++|++|+.++ ...++.++.+|.+.|..++|..+++.|.. ||..+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 3456777888888888899999999999999887544 44566777888899999999999988864 89999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC----CCcchHHHHHHHHHh
Q 045069 107 YACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD----PDLVLCNSMISGFAH 182 (554)
Q Consensus 107 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 182 (554)
|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999874 889999999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHH--hcCCCchhHHHHHHHHHHhcCChhhHH
Q 045069 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK--SSFDSYDYVSSVLVSMYARCNCMNSAY 260 (554)
Q Consensus 183 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (554)
.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 578899999999999999999999999
Q ss_pred HHHhhc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 261 HVFNSL----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 261 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
++|+.| ..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999988 4577889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccC----CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMS----ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSA 412 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 412 (554)
+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999885 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----c-------------------CChHHHHHHHHhC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----A-------------------GNLEEAYSFIWSL 469 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 469 (554)
++.+|++.|++++|.+++++|.+. |+.||..+|+.++..+.+ + +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 999999999999999999999886 999999999998865431 1 2246799999998
Q ss_pred C---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCC
Q 045069 470 P---KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAG 545 (554)
Q Consensus 470 ~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 545 (554)
. ..|+..+|..++.++...+..+.+...++.+... .+++...|..|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 6 4799999999998888888898888888876544 567778889998887332 368999999999999998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=545.61 Aligned_cols=497 Identities=15% Similarity=0.186 Sum_probs=468.1
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcC-CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASL-LRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHR 84 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (554)
+..+...+.++|+++++.++++.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|+.||..+||.+|.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 33444555677999999999999999995 67888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcc
Q 045069 85 FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 85 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
+++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----CCcchHHHHHHHHHhCCChhhHHHHHHHHHH--CCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCC
Q 045069 165 VSD----PDLVLCNSMISGFAHCGFWDKSLQLFDWMLR--LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDS 238 (554)
Q Consensus 165 ~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 238 (554)
|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 964 9999999999999999999999999999976 6899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSL----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLA 314 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 314 (554)
+..+|+.++.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999 468999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC----CCCcchHHHHHHHHHcCCChHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS----ERNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 390 (554)
+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+++.
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999987 4999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhc----C-------------------CchHHHHHHHHHhHHHhCCCCChhHHH
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCH----G-------------------GLVNDGREIFTRMTEEYGIQAKTEHYI 447 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (554)
|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.||..+|+
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~ 851 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHH
Confidence 99999999999999999999999876542 1 2246799999999996 9999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLP---KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
.++.++.+.+..+.+.++++.+. ..++..+|+.++.++.+. .++|..++++|.+..
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99999989999999999999875 367788999999998432 468999999999983
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-65 Score=519.87 Aligned_cols=433 Identities=21% Similarity=0.333 Sum_probs=417.5
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 045069 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFN 86 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 86 (554)
..++..+...++++.+.+++..|.+.|+.||+.+|+.|+.+|++.|++++|.++|++|++||..+||+++.+|++.|+++
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHH
Confidence 35555666667788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccC
Q 045069 87 DAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVS 166 (554)
Q Consensus 87 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 166 (554)
+|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHH
Q 045069 167 DPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246 (554)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (554)
++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..+.+.|+.||..++++|
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhH
Q 045069 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA 326 (554)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 326 (554)
+++|+++|++++|.++|++|.++|..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCchHHHHHHHHHHHHccCChHHHHHHHhccC-CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 045069 327 VIHGYVIQ-HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS-ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN 404 (554)
Q Consensus 327 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 404 (554)
++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. +|+..+|++|+.+|...|+++.|..+++++.+ +.
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~ 524 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MG 524 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CC
Confidence 99999986 6999999999999999999999999999999997 69999999999999999999999999999976 66
Q ss_pred CC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 405 PD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 405 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
|+ ..+|..++..|++.|++++|.++++.|.++ |+...
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 75 569999999999999999999999999996 87643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=303.66 Aligned_cols=523 Identities=11% Similarity=0.006 Sum_probs=312.4
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhc
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALA 82 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 82 (554)
...+..++...++.+.+....+.+.+.. +.++..+..+...+.+.|++++|.+.|+++. +.+...+..+...+...
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Confidence 3456667777888888877777776543 4566777788888888888888888887754 23445666677777777
Q ss_pred CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhh
Q 045069 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVF 162 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 162 (554)
|++++|++.++.+.+.... +......++..+.+.|++++|..+++.+.... +++..++..+...+...|++++|...|
T Consensus 411 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777777777665322 22344445566666777777777777666543 335566666667777777777777777
Q ss_pred cccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCc
Q 045069 163 DGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSY 239 (554)
Q Consensus 163 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 239 (554)
+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 66543 234445556666666666666666666665542 2244555556666666666666666666655543 233
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045069 240 DYVSSVLVSMYARCNCMNSAYHVFNSLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316 (554)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 316 (554)
...+..++..|.+.|++++|..+++.+. +.+...|..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4455556666666666666666666552 2344556666666666666666666666665432 22344555555566
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
...|++++|...++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|.+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666665543 33445555566666666666666666655542 233445555555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 045069 394 FFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--K 471 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 471 (554)
.|+++.+. .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|.+.|+++. .
T Consensus 725 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 725 AYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 66665552 344444555555555566666666666555552 34445555555555555666666666655543 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
++++..+..++..+...|+ .+|+..++++.+..|+++..+..++.++...|++++|.++++++++.++
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4445555555555555555 5555555555555555555555555555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=301.23 Aligned_cols=519 Identities=13% Similarity=0.031 Sum_probs=389.0
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 045069 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ---RSVFLWNSIIRAYALAH 83 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 83 (554)
..+...+...++.+.+...++.+.+.. +.++..+..+...+...|++++|.+.|+.... .....+..++..+.+.|
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 345666677788888877777776543 34566677777788888888888888876542 23345566777788888
Q ss_pred ChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhc
Q 045069 84 RFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFD 163 (554)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 163 (554)
++++|+.+++.+... .+++..++..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|.+.|+
T Consensus 446 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888765 344666777788888888888888888888776543 345566677778888888888888888
Q ss_pred ccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCch
Q 045069 164 GVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD 240 (554)
Q Consensus 164 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 240 (554)
++.+ .+..++..+...+.+.|+.++|...++++...+ +.+...+..+...+...|+++.|..+++.+.+.. +.+.
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 7754 355667777788888888888888888876653 3345566677778888888888888888776543 4456
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 045069 241 YVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAA 317 (554)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 317 (554)
..+..+..+|...|++++|...|+.+ .+.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 77788888888888888888888776 23455667777888888888888888888877643 334667777788888
Q ss_pred ccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHH
Q 045069 318 KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFF 395 (554)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 395 (554)
..|+++.|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++.+.|++++|.+.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888887765 45666777778888888888888888887663 55567777778888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC
Q 045069 396 RDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPV 473 (554)
Q Consensus 396 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 473 (554)
+++.+. .+.+...+..+...|...|++++|...|+++.+. .+++..++..++..+...|+ .+|+++++++. .+.
T Consensus 760 ~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 760 EAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 888774 2345567777778888888888888888888773 45667778888888888888 77888887753 245
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++..+..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666777777788888888888888888888888888888888888888888888888888775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-24 Score=231.48 Aligned_cols=522 Identities=11% Similarity=0.010 Sum_probs=297.5
Q ss_pred HHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCc-chH-------------
Q 045069 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP--QRSV-FLW------------- 72 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~-~~~------------- 72 (554)
..++....++.+.+++.++.+.... +.++..+..+...+.+.|+.++|.+.+++.. .|+. ..+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 3455556677777777777666543 4578888889999999999999999998876 2332 221
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHH
Q 045069 73 ---NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNF-TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTA 148 (554)
Q Consensus 73 ---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 148 (554)
....+.+...|++++|+..|+.+.+.+ +|+.. ............|+.++|...++.+.+..+. +...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 223446788999999999999998753 33322 1111222233568999999999999988633 66778888999
Q ss_pred HHcCCCHhHHHHhhcccCC-CCc-----c-----------------hHH-------------------------------
Q 045069 149 YSKLSLIDEAIKVFDGVSD-PDL-----V-----------------LCN------------------------------- 174 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~-~~~-----~-----------------~~~------------------------------- 174 (554)
+...|+.++|+..++++.+ +.. . .+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999987643 110 0 000
Q ss_pred ---HHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCch-hHH-------
Q 045069 175 ---SMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD-YVS------- 243 (554)
Q Consensus 175 ---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------- 243 (554)
.....+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+....... ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 01122344455555555555554431 113344445555555555555555555555544322111 101
Q ss_pred -----HHHHHHHHhcCChhhHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045069 244 -----SVLVSMYARCNCMNSAYHVFNSLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAA 315 (554)
Q Consensus 244 -----~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 315 (554)
......+.+.|++++|...|++.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 111233445555555555555541 1233444445555555555555555555555432 1122233333333
Q ss_pred HhccCCcchhHHHHHHHHHhcCC--------chHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHc
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFE--------LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGL 384 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 384 (554)
+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++..+ | +...+..+...|.+
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 32 23445555554443221100 0012233445556667777777777776653 3 23455666777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC-------------------------
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYG------------------------- 438 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------- 438 (554)
.|++++|...++++.+. .|+ ...+..+...+...++.++|...++.+... .
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 77777777777777763 343 334444444556677777777777765321 1
Q ss_pred --------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 439 --------------IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 439 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
.+.+...+..+...+.+.|++++|++.++++. .+.++..+..++..+...|++++|++.++++.
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 12233344445555555566666666655543 24445555566666666666666666666666
Q ss_pred hcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 503 ENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 503 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+..|+++..+..++.++...|++++|.+++++++...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 6566666666666666666666666666666665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-24 Score=230.30 Aligned_cols=517 Identities=12% Similarity=0.036 Sum_probs=371.6
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhcCCCChhH-HHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhc
Q 045069 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFY-ATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALA 82 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 82 (554)
+.+..++...++.+.|.+.++...+.. +|+... ...+.......|+.++|++.++++. +.+...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 345567888899999998888887653 333322 1122222334589999999999876 23556788888899999
Q ss_pred CChHHHHHHHHHhHHcCC------------------C--------------CCcccH---------------------HH
Q 045069 83 HRFNDAKSLFKNLLRTQL------------------K--------------PDNFTY---------------------AC 109 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~ 109 (554)
|+.++|+..++++.+... . |+.... ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999998755321 0 111000 01
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CCcc---hHH----------
Q 045069 110 ITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PDLV---LCN---------- 174 (554)
Q Consensus 110 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~---------- 174 (554)
....+...|++++|...+++..+..+ .+...+..+..++.+.|++++|+..|++..+ |+.. .|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 12334566788888888888777643 2667777777888888888888888877654 3221 121
Q ss_pred --HHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045069 175 --SMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR 252 (554)
Q Consensus 175 --~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (554)
.....+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.++.+.+.... +...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-
Confidence 11345667788888888888877653 223445666677777888888888888887776432 3445555666654
Q ss_pred cCChhhHHHHHhhcCCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 045069 253 CNCMNSAYHVFNSLFHPD------------LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 320 (554)
.++.++|...++.+.... ...+..+...+...|++++|...+++..+.. +-+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 356777877777663321 1234455667788999999999999988763 224556777888899999
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC----Cc---------chHHHHHHHHHcCCC
Q 045069 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER----NI---------ITYNSVILGLGLHGF 387 (554)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~ 387 (554)
++++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988754 334444555555677889999999999887632 11 112345667888999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
.++|..+++. .+++...+..+...+.+.|++++|+..|++..+. -+.+...+..++..|...|++++|++.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998872 3445567788888999999999999999999883 45568889999999999999999999999
Q ss_pred hCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 468 SLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG------AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 468 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+.. +.+...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|++.+++.+.
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8753 45667778888889999999999999999999866544 3666778999999999999999999975
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-21 Score=201.31 Aligned_cols=521 Identities=10% Similarity=-0.048 Sum_probs=351.7
Q ss_pred hHHHHHHHhhhc-cchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCcchHHHHHHHHHh
Q 045069 5 LHFLVLELSKSH-QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP--QRSVFLWNSIIRAYAL 81 (554)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~ 81 (554)
.++.+...+... |++..|...++...+... -++.++..|...|.+.|+.++|+..+++.. .|+-..|..++..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--
Confidence 333444444444 888888888888877653 347778888889999999999988888765 33323333333222
Q ss_pred cCChHHHHHHHHHhHHcCC------------------------------------CC--CcccHHHH-HHHhhcCCChhh
Q 045069 82 AHRFNDAKSLFKNLLRTQL------------------------------------KP--DNFTYACI-TRACSENSDLPG 122 (554)
Q Consensus 82 ~~~~~~a~~~~~~m~~~~~------------------------------------~p--~~~~~~~l-l~~~~~~~~~~~ 122 (554)
+++.+|..+++++..... .| +....... ...|.+.|+++.
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 666677777777655421 11 12222222 455666677777
Q ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHc-CCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 045069 123 LRFVHGGAIVSGLGRDSITSSALVTAYSK-LSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGK 201 (554)
Q Consensus 123 a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 201 (554)
|..++..+.+.++. +......|..+|.. .++ +.+..+++...+.++..+..+...+.+.|+.++|..+++++.....
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 77777777777633 34445555556666 355 7777776654445777788889999999999999999988755422
Q ss_pred C-CChhhHHHHHH------------------------------HcccCCccchhhHHH----------------------
Q 045069 202 T-PDEYTLVGLIS------------------------------GLWEPSLLSVGQGIH---------------------- 228 (554)
Q Consensus 202 ~-p~~~~~~~ll~------------------------------~~~~~~~~~~a~~~~---------------------- 228 (554)
. |+..++.-++. .+.+.++++.++++.
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 2 33333322221 222333333333221
Q ss_pred -------HHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC--C----ChhhHHHHHHHHHhcCC---HHHHHH
Q 045069 229 -------GFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH--P----DLVTWSALITGYSQQGD---YGKALY 292 (554)
Q Consensus 229 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~---~~~a~~ 292 (554)
..+.+. .+.+.....-+.....+.|+.++|.++|+...+ + +...-..++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 111111 011233333344445678999999999998843 2 22334466777777665 334433
Q ss_pred H----------------------HHHHHh-CCC-CC--CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHH
Q 045069 293 Y----------------------FRKLNM-QGK-KA--DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSA 346 (554)
Q Consensus 293 ~----------------------~~~m~~-~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (554)
+ +..... .+. ++ +...+..+..++.. ++..+|...+....... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 3 111111 112 23 56667777766665 78888999888777664 44444444
Q ss_pred HHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCch
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLV 423 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 423 (554)
+...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...+++..+. .|+.. .+..+...+...|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCH
Confidence 55556789999999999987663 45556667778888999999999999999885 35443 344444455677999
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
++|...+++..+ ..|+...+..+..++.+.|+.++|+..+++.. .|.++..+..+..++...|+.++|+..++++
T Consensus 593 ~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999976 45678889999999999999999999999864 3667788888888999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 502 FENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 502 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
++..|+++.++..++.++...|++++|+..++++++..+
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999987664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=194.61 Aligned_cols=476 Identities=10% Similarity=-0.006 Sum_probs=337.5
Q ss_pred HHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhH
Q 045069 47 LYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123 (554)
Q Consensus 47 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 123 (554)
.+...|++++|+..|+... +.+..++..+.+.|...|++++|+..+++..+. .|+...|..++..+ ++.++|
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhH
Confidence 3344599999999999865 335678899999999999999999999999885 45555555544333 888999
Q ss_pred HHHHHHHHHhcCCCCHhHHHHHHHH--------HHcCCCHhHHHHhhcccCCCC--cchHHHH-HHHHHhCCChhhHHHH
Q 045069 124 RFVHGGAIVSGLGRDSITSSALVTA--------YSKLSLIDEAIKVFDGVSDPD--LVLCNSM-ISGFAHCGFWDKSLQL 192 (554)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~ 192 (554)
..+++++.+..+. +..++..+... |.+.++..++++ .+...|+ ....... ...|.+.|++++|++.
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999998643 45555555555 777767777776 3333343 4444444 8999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHccc-CCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC---
Q 045069 193 FDWMLRLGKTPDEYTLVGLISGLWE-PSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH--- 268 (554)
Q Consensus 193 ~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 268 (554)
+.++.+.+.. +..-...+-..+.. .++ +.+..++. ..+..++.+...+...|.+.|+.++|.++++++..
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 9999997533 33335555556665 355 55655533 24446888899999999999999999999988722
Q ss_pred --CChhh--HH----------------------------HHHHHH-----------------------------------
Q 045069 269 --PDLVT--WS----------------------------ALITGY----------------------------------- 281 (554)
Q Consensus 269 --~~~~~--~~----------------------------~l~~~~----------------------------------- 281 (554)
|...+ |+ .++..+
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 11111 00 001222
Q ss_pred ----------------------------HhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCcchhHHH---
Q 045069 282 ----------------------------SQQGDYGKALYYFRKLNMQ--GKKADPVLIASVLAAAAKSANVWPGAVI--- 328 (554)
Q Consensus 282 ----------------------------~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~--- 328 (554)
.+.|+.++|..+++..... ...++.....-++..+.+.+......++
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 2334455555555554431 1223333444666666666552222221
Q ss_pred ----------------------HHHHHHh-cC-Cc--hHHHHHHHHHHHHccCChHHHHHHHhccC--CCCcchHHHHHH
Q 045069 329 ----------------------HGYVIQH-GF-EL--SVMVSSALVDMYSKCGYLGLGIQVFETMS--ERNIITYNSVIL 380 (554)
Q Consensus 329 ----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 380 (554)
+...... +. ++ +...|..+..++.. ++.++|...+.+.. .|+......+..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~ 517 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAY 517 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 1111111 11 23 56778888888877 89999999777665 365443333445
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (554)
.+...|++++|...|+++.. ..|+...+..+...+.+.|++++|...+++..+. .+++...+..+.....+.|+++
T Consensus 518 al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHH
Confidence 55689999999999999876 3566566777778889999999999999999873 2333444444444555679999
Q ss_pred HHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 461 EAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 461 ~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+|+..+++.. ..|+...+..+..++.+.|+.++|+..++++++.+|+++..+..++.++...|++++|++.++++++..
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999865 356788999999999999999999999999999999999999999999999999999999999998876
Q ss_pred Cc
Q 045069 540 LR 541 (554)
Q Consensus 540 ~~ 541 (554)
+.
T Consensus 674 P~ 675 (987)
T PRK09782 674 PD 675 (987)
T ss_pred CC
Confidence 53
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=185.21 Aligned_cols=443 Identities=11% Similarity=0.047 Sum_probs=349.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHc
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSK 151 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 151 (554)
...+..-..+.|++++|++.-...-+.+ +.+....-.+-..+.+..+.+.....-....+.. +.-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556667899999988877665543 2233333334445555555555544433333332 3356788889999999
Q ss_pred CCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHH-HHcccCCccchhhHH
Q 045069 152 LSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI-SGLWEPSLLSVGQGI 227 (554)
Q Consensus 152 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~ 227 (554)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ ..+-..|+..+|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988876 3567888888999999999999999888766 456655433322 233456788888888
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 045069 228 HGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPD---LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKA 304 (554)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 304 (554)
+...++... .-...|+.|...+...|+...|+..|++...-| ...|-.|...|...+.+++|+..|.+.... +|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 777766543 345678888889999999999999999985433 457888889999999999999999887654 56
Q ss_pred CH-HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHH
Q 045069 305 DP-VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVIL 380 (554)
Q Consensus 305 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 380 (554)
+. ..+..+...|...|.++.|...+++..+.. +--+..|+.|..++...|+..+|.+.|.+... | ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 54 467777778889999999999999998875 34467899999999999999999999998774 3 4568889999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGN 458 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 458 (554)
.|...|.++.|..+|....+ +.|... .++.|...|-+.|++++|+..+++..+ +.|+ ...|+.+...|...|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 788765 789999999999999999999999865 7777 6789999999999999
Q ss_pred hHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 045069 459 LEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 459 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 527 (554)
.+.|++.+.+... +.-...+..|.+.|...|+..+|++.|+.+++++|+.+..+..++.++.-..+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999988652 55677889999999999999999999999999999999999999888766665554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-21 Score=174.04 Aligned_cols=420 Identities=13% Similarity=0.103 Sum_probs=339.1
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCC
Q 045069 109 CITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGF 185 (554)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 185 (554)
.|..-.-+.|++++|++.-...-..+. .+....-.+-..+....+.+.....-....+ ....+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 344445578999999988776655442 2233333334455555555554433222222 345689999999999999
Q ss_pred hhhHHHHHHHHHHCCCCC-ChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchh-HHHHHHHHHHhcCChhhHHHHH
Q 045069 186 WDKSLQLFDWMLRLGKTP-DEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDY-VSSVLVSMYARCNCMNSAYHVF 263 (554)
Q Consensus 186 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 263 (554)
+++|+.+++.+.+. +| ....|..+..++...|+.+.|...+...++.. |+.. ..+.+.......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999885 44 45688899999999999999999998877654 3332 3344555666789999999998
Q ss_pred hhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc
Q 045069 264 NSLFH--P-DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL 339 (554)
Q Consensus 264 ~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (554)
.+..+ | -...|+.|...+-.+|+...|+..|++.... .|+ ...|..+-..|...+.++.|...+.+..... +-
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 88744 3 3467999999999999999999999998764 455 3478888888889999999999988877654 44
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc-chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI-ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLC 415 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~ 415 (554)
...++..+...|-..|.++.|+..|++..+ |+. ..|+.|..++...|++.+|...|.+.+. +.|+.. +.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 567788888889999999999999999874 553 5899999999999999999999999998 667654 7888999
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
.+...|.+++|..+|....+ +.|. ...++.|...|..+|++++|+..+++.. .+.-...+..+...|-..|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999866 4454 6778999999999999999999999864 3556788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.|.+.+.+++..+|.-...+..|+.+|...|+..+|+.-++..++..+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999886544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-20 Score=185.41 Aligned_cols=251 Identities=14% Similarity=0.071 Sum_probs=193.8
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 284 QGDYGKALYYFRKLNMQG-KKAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
.+++++|...|++..+.+ ..|+ ...+..+...+...|++++|...++...+.. +.....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887654 2333 3456666667778888888888888887664 334567777888888889999999
Q ss_pred HHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 362 QVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 362 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
..|+...+ .+...|..+...+...|++++|+..|++.++ ..|+ ...+..+...+.+.|++++|+..|++..+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 98887653 3456788888889999999999999999988 4554 456777888888999999999999998873
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-hhh-------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVD-PAV-------SGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
.+.+...++.+..++...|++++|++.|++... .|+ ... +......+...|++++|.+.++++++.+|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455678888899999999999999999988532 221 111 1112222344689999999999999999999
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
...+..++.++.+.|++++|++++++..+..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=180.46 Aligned_cols=295 Identities=14% Similarity=0.138 Sum_probs=228.8
Q ss_pred HHHhcCChhhHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCc
Q 045069 249 MYARCNCMNSAYHVFNSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD---PVLIASVLAAAAKSANV 322 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~ 322 (554)
.+...|++++|...|+++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 35566777888888877732 3445677788888888888888888888876543222 24567777788888888
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc------chHHHHHHHHHcCCChHHHHHH
Q 045069 323 WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI------ITYNSVILGLGLHGFTYQAFEF 394 (554)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~------~~~~~l~~~~~~~~~~~~a~~~ 394 (554)
+.|..+++.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+ |+. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887653 45667788888888888999999888888764 221 1345677778889999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 045069 395 FRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KP 472 (554)
Q Consensus 395 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 472 (554)
++++.+. .|+ ...+..+...+.+.|++++|.++++++.+. +......++..++.+|...|++++|.+.++++. ..
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999884 344 457788889999999999999999999873 222224667889999999999999999999865 35
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc--cCChhHHHHHHHHHhhcCCccCCCee
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE--DGRWDDVMKLRDDIVDNGLRKEAGVS 547 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~s 547 (554)
|+...+..++..+.+.|++++|...++++++..|++......+...+.. .|+.++|..+++++.+++++++|.+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 6666778888999999999999999999999999887655555433322 56999999999999999999998643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=173.58 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=178.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCC---HhHHHHHHHHHHcC
Q 045069 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD---SITSSALVTAYSKL 152 (554)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 152 (554)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556777888888888887753 22445677777777778888888888777776432221 24566677777777
Q ss_pred CCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHH
Q 045069 153 SLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHG 229 (554)
Q Consensus 153 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (554)
|++++|+.+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------- 179 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--------------------- 179 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---------------------
Confidence 777777777777754 34556777777777778888887777777654322111000
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 045069 230 FCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLI 309 (554)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 309 (554)
... +..+...+.+.|++++|...++++.+.. +.+...+
T Consensus 180 ----------~~~-------------------------------~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 217 (389)
T PRK11788 180 ----------AHF-------------------------------YCELAQQALARGDLDAARALLKKALAAD-PQCVRAS 217 (389)
T ss_pred ----------HHH-------------------------------HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHH
Confidence 001 2223333344444444444444443321 1122233
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC--CCCcchHHHHHHHHHcCCC
Q 045069 310 ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS--ERNIITYNSVILGLGLHGF 387 (554)
Q Consensus 310 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 387 (554)
..+...+.+.|++++|..+++++.+.+......+++.++.+|.+.|++++|...++.+. .|+...+..++..+.+.|+
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 33444444444444444444444433322223445566666666677777766666655 2555555666777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---CCchHHHHHHHHHhHHHhCCCCChh
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCH---GGLVNDGREIFTRMTEEYGIQAKTE 444 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 444 (554)
+++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++.++ ++.|++.
T Consensus 298 ~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 298 PEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 7777777777776 35777777766666553 44777777777777765 6666554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-18 Score=175.49 Aligned_cols=351 Identities=11% Similarity=-0.025 Sum_probs=242.5
Q ss_pred cCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchh
Q 045069 151 KLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVG 224 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 224 (554)
+..+|+.-.-+|..-++ .+......++..+.+.|++++|+.+++........+. ..+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHH
Confidence 34455544444444433 2233344556667777777777777777766533332 2333344455567777777
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 045069 225 QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQG 301 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 301 (554)
...++.+.+..+ .+...+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 777777766542 345566777778888888888888888772 3456677788888888888888888888776554
Q ss_pred CCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHH
Q 045069 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSV 378 (554)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 378 (554)
..+. ..+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.... .+...+..+
T Consensus 175 P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3222 222222 34677888888888888877664334444555566778888888888888887663 344567778
Q ss_pred HHHHHcCCChHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 379 ILGLGLHGFTYQ----AFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 379 ~~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
...+...|++++ |...+++..+ ..|+ ...+..+...+...|++++|...+++..+. -+.+...+..+..++
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 888888888875 7888888887 4555 447888888888899999999999888773 344466677788888
Q ss_pred HhcCChHHHHHHHHhCC-CCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 454 GLAGNLEEAYSFIWSLP-KPVDP-AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
.+.|++++|++.++++. ..|+. ..+..+..++...|+.++|...|+++.+..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88999999999888865 33443 3344456678888999999999999998888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-17 Score=171.52 Aligned_cols=396 Identities=10% Similarity=0.019 Sum_probs=186.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcC
Q 045069 73 NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKL 152 (554)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 152 (554)
.-.+......|+.++|++++....... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334555556667777776666665421 2233346666666666667777766666666553 22344555566666666
Q ss_pred CCHhHHHHhhcccCC--C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHH
Q 045069 153 SLIDEAIKVFDGVSD--P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHG 229 (554)
Q Consensus 153 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (554)
|++++|+..+++..+ | +.. +..+..++...|+.++|+..+++..+. .|+.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~------------------------ 149 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQT------------------------ 149 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC------------------------
Confidence 666666666666543 2 233 555556666666666666666666553 2322
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC-CCh------hhHHHHHHHHH-----hcCCH---HHHHHHH
Q 045069 230 FCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH-PDL------VTWSALITGYS-----QQGDY---GKALYYF 294 (554)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~ 294 (554)
...+..+..++...+..+.|.+.++.... |+. .....++.... ..+++ ++|+..+
T Consensus 150 ----------~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 150 ----------QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred ----------HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 22223344445555555666665555433 110 01111111111 11223 5566666
Q ss_pred HHHHhC-CCCCCHH-HHH----HHHHHHhccCCcchhHHHHHHHHHhcCC-chHHHHHHHHHHHHccCChHHHHHHHhcc
Q 045069 295 RKLNMQ-GKKADPV-LIA----SVLAAAAKSANVWPGAVIHGYVIQHGFE-LSVMVSSALVDMYSKCGYLGLGIQVFETM 367 (554)
Q Consensus 295 ~~m~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (554)
+.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666543 1122211 110 0122333445555555555555554321 111 1111344555555555555555554
Q ss_pred CC--CCc-----chHHHHHHHHHcCCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhcCCchHHH
Q 045069 368 SE--RNI-----ITYNSVILGLGLHGFTYQAFEFFRDIIEKG-----------LNPDE---STFSALLCACCHGGLVNDG 426 (554)
Q Consensus 368 ~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a 426 (554)
.+ |.. .....+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 32 111 123334444555555555555555555421 01111 1223333444445555555
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+++++++.. ..+.+...+..++..+...|++++|++.++++. .|.+...+..++..+...|++++|+..++++++.
T Consensus 379 ~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555544 233334444444455555555555555554432 1223334444444444445555555555555555
Q ss_pred CCCCch
Q 045069 505 DPRKGA 510 (554)
Q Consensus 505 ~p~~~~ 510 (554)
.|+++.
T Consensus 457 ~Pd~~~ 462 (765)
T PRK10049 457 EPQDPG 462 (765)
T ss_pred CCCCHH
Confidence 554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-18 Score=174.63 Aligned_cols=391 Identities=10% Similarity=0.009 Sum_probs=262.8
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCC
Q 045069 108 ACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCG 184 (554)
Q Consensus 108 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 184 (554)
.-.+......|+.++|.+++....... +.+...+..+..++...|++++|..+|++..+ .+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 334444455555555555555554321 22333455555555555555555555555322 22333444445555555
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHh
Q 045069 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFN 264 (554)
Q Consensus 185 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 264 (554)
++++|+..+++..+ .. +.+.. +..+..++...|+.++|...++
T Consensus 98 ~~~eA~~~l~~~l~-----------------------------------~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 98 QYDEALVKAKQLVS-----------------------------------GA-PDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred CHHHHHHHHHHHHH-----------------------------------hC-CCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555555544 32 22233 5566777888899999999988
Q ss_pred hcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhc-----cCCc---chhHH
Q 045069 265 SLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP------VLIASVLAAAAK-----SANV---WPGAV 327 (554)
Q Consensus 265 ~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~ 327 (554)
++. +.+...+..+..++...|..++|+..++.... .|+. ......+..... .+++ +.|..
T Consensus 141 ~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 872 33555667788888899999999999886653 2332 111222222221 1223 66777
Q ss_pred HHHHHHHh-cCCchHH-HH----HHHHHHHHccCChHHHHHHHhccCCCC--cc--hHHHHHHHHHcCCChHHHHHHHHH
Q 045069 328 IHGYVIQH-GFELSVM-VS----SALVDMYSKCGYLGLGIQVFETMSERN--II--TYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 328 ~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 88888754 2222221 11 111334457799999999999988532 12 223356789999999999999999
Q ss_pred HHHcCCCC---CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC------------CC---hhHHHHHHHHHHhcCCh
Q 045069 398 IIEKGLNP---DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ------------AK---TEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 398 m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~ 459 (554)
+.+..... .......+..++...|++++|.++++.+... .+ |+ ...+..++..+...|+.
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 88743111 1245666777889999999999999999873 22 22 23456788889999999
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++|+++++++. .|.+...+..++..+...|++++|++.++++++.+|++...+..++..+...|++++|+.+++++++
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999974 3667888999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCc
Q 045069 538 NGLR 541 (554)
Q Consensus 538 ~~~~ 541 (554)
..+.
T Consensus 456 ~~Pd 459 (765)
T PRK10049 456 REPQ 459 (765)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-18 Score=172.39 Aligned_cols=354 Identities=10% Similarity=0.001 Sum_probs=281.3
Q ss_pred HHhCCChhhHHHHHHHHHHC--CCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChh
Q 045069 180 FAHCGFWDKSLQLFDWMLRL--GKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMN 257 (554)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (554)
+.+..+|+.-.-+|..-.++ .-.-+......++..+.+.|+++.|..+++........+.... ..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHH
Confidence 34566676665555544332 1122344556677788899999999999999988876654444 44556667799999
Q ss_pred hHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 045069 258 SAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ 334 (554)
Q Consensus 258 ~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 334 (554)
.|...++++ .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998 33456778888999999999999999999998752 33456778888899999999999999998877
Q ss_pred hcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC----CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHH
Q 045069 335 HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER----NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-EST 409 (554)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~ 409 (554)
....+. ..+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+. .|+ ...
T Consensus 173 ~~P~~~-~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 173 EVPPRG-DMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred hCCCCH-HHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 654333 3333333 478899999999999987642 2334455667888999999999999999985 444 557
Q ss_pred HHHHHHHHhcCCchHH----HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 410 FSALLCACCHGGLVND----GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
+..+...+...|++++ |...|++..+. .+.+...+..+...+.+.|++++|+..+++.. .+.++..+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888999999999986 89999999873 44567889999999999999999999999864 3556777888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++...|++++|...++++.+..|+++..+..++.++...|++++|++.++++.+..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999998887777888999999999999999999887554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-17 Score=157.69 Aligned_cols=451 Identities=11% Similarity=0.001 Sum_probs=287.7
Q ss_pred HHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCC--CCHhHHHHHHHHHHcCCCHhHHHHhhc
Q 045069 86 NDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG--RDSITSSALVTAYSKLSLIDEAIKVFD 163 (554)
Q Consensus 86 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 163 (554)
..+..++...-... .-|+...+.|.+.+.-.|+++.+..+...+...... .-...|--+.++|-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444443332 224555666666666777777777777766654311 122345556777777777777777776
Q ss_pred ccCC--CCc--chHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC----ccchhhHHHHHHHHhc
Q 045069 164 GVSD--PDL--VLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS----LLSVGQGIHGFCLKSS 235 (554)
Q Consensus 164 ~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~ 235 (554)
+..+ +|. ..+--+...+.+.|+.+.+...|+...+. .+-+..|...+-..|+..+ ..+.|..++....+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 6554 332 23445667777777777777777777654 1223345544444444443 3344444444444433
Q ss_pred CCCchhHHHHHHHHHHhcCChh------hHHHHHhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC
Q 045069 236 FDSYDYVSSVLVSMYARCNCMN------SAYHVFNSL-FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ---GKKAD 305 (554)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~ 305 (554)
+.|...|-.+...|....-+. .|..++..- ....+...|.+.......|++.+|...|.+.... ...++
T Consensus 411 -~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 445556666666555543322 233222222 3356667777777777888888888888776543 11222
Q ss_pred H------HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHH
Q 045069 306 P------VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYN 376 (554)
Q Consensus 306 ~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 376 (554)
. .+-..+....-..++.+.|.+.+..+.+.. +.-+..|-.+..+....+...+|...++.... .++..+.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 2 233344455556677788888888777653 22233344443333344667777777776663 4555666
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc------------CCchHHHHHHHHHhHHHhCCCCCh
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCH------------GGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
.+...+.....+..|.+-|+...+.- ..+|..+...|...|.. .+..++|+++|.+..+ ..|.+.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~ 646 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM 646 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 66667777777777777666555432 23566666566655442 2346778888888877 456677
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHH
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRKGAYKVMLSNTY 519 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 519 (554)
..-|-+.-+++..|++.+|..+|.+... .....+|..+..+|...|++..|++.|+...+.. .+++.+...|+.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 7888888899999999999999988763 3467889999999999999999999999998883 56788889999999
Q ss_pred HccCChhHHHHHHHHHhhcCCcc
Q 045069 520 AEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+.|++.+|.+.+...++..+..
T Consensus 727 y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCCcc
Confidence 99999999999998888765543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-17 Score=165.17 Aligned_cols=423 Identities=10% Similarity=-0.036 Sum_probs=259.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYS 150 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 150 (554)
.+......+.+.|++++|+..|++..+ +.|+...|..+..++.+.|++++|...++..++..+ .+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 344556667777777777777777765 355666677777777777777777777777766542 24556666777777
Q ss_pred cCCCHhHHHHhhcccCCC---CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHH
Q 045069 151 KLSLIDEAIKVFDGVSDP---DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGI 227 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 227 (554)
..|++++|+.-|...... +......++..+.. ..+........+.. .++...+..+.. +...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 777777777666543221 11111111111111 11222222222211 111111111111 1111011111111
Q ss_pred HHHHHHhcCCCch-hHHHHHHHH---HHhcCChhhHHHHHhhcCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045069 228 HGFCLKSSFDSYD-YVSSVLVSM---YARCNCMNSAYHVFNSLFH------PDLVTWSALITGYSQQGDYGKALYYFRKL 297 (554)
Q Consensus 228 ~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 297 (554)
+....+ ..+.. ..+..+... ....+++++|.+.|+.... .....|+.+...+...|++++|+..+++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111000 00100 000111100 1234667777777776632 23456777777788888888888888887
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-Ccc
Q 045069 298 NMQGKKAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NII 373 (554)
Q Consensus 298 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~ 373 (554)
.+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +..
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 765 344 4567777777888888888888888887764 44567788888888888999999998888764 3 345
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh------hHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT------EHY 446 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 446 (554)
.+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|++..+. .-..+. ..+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHH
Confidence 6677788888899999999999988873 454 567888888888899999999999888662 111111 112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+.....+...|++++|.+++++.. .+.+...+..++..+...|++++|+..|+++.+..+....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 222333445689999999988853 2445556788888899999999999999999888765443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-16 Score=161.70 Aligned_cols=439 Identities=10% Similarity=0.021 Sum_probs=284.6
Q ss_pred HHHHHHhcCCchhHHHHhccCCC--CCcc-hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccH-HHH--HHHhhcC
Q 045069 44 LVRLYALNNVLPSARILFDKTPQ--RSVF-LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTY-ACI--TRACSEN 117 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l--l~~~~~~ 117 (554)
-+-...+.|+++.|+..|++..+ |+.. .-..++..+...|+.++|+..+++.. .|+...+ ..+ ...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence 34456778888888888887662 3321 22277777778888888888888776 3333322 223 4466677
Q ss_pred CChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHH
Q 045069 118 SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (554)
|++++|.++++.+.+..+. ++..+..++..+...++.++|++.++++.+ |+...+-.++..+...++..+|++.+++
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8888888888888877643 456666777778888888888888888776 4433443333333334555558888888
Q ss_pred HHHCCCCCC-hhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhH
Q 045069 196 MLRLGKTPD-EYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTW 274 (554)
Q Consensus 196 m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (554)
+.+. .|+ ...+..++.++.+.|-...|.++...- |+..+-..... =+.+.|.+..+....++
T Consensus 195 ll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~---- 257 (822)
T PRK14574 195 AVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMAVLPT---- 257 (822)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhccccc----
Confidence 8775 343 444455555666666555555443321 11110000000 00001111111100000
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhC-CCCCCHH-----HHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHH
Q 045069 275 SALITGYSQQGD---YGKALYYFRKLNMQ-GKKADPV-----LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSS 345 (554)
Q Consensus 275 ~~l~~~~~~~g~---~~~a~~~~~~m~~~-~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (554)
-....+ .+.|+.-++.+... +..|... ...-.+-++...|+..++...++.+...+.+....+-.
T Consensus 258 ------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 258 ------RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred ------ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 001112 34455555554432 1223221 12234456777888888888888888888776677888
Q ss_pred HHHHHHHccCChHHHHHHHhccCCC---------CcchHHHHHHHHHcCCChHHHHHHHHHHHHcC-------------C
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSER---------NIITYNSVILGLGLHGFTYQAFEFFRDIIEKG-------------L 403 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-------------~ 403 (554)
++.++|...+++++|..+|+.+..+ +......|..+|...+++++|..+++++.+.- .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 8888888888899998888877531 12224667888888999999999999988731 1
Q ss_pred CCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 045069 404 NPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGA 480 (554)
Q Consensus 404 ~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 480 (554)
.||-. .+..++..+...|++.+|++.++++.. .-|-|......+...+...|...+|++.++... .+.+..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 12222 345566778889999999999999977 467788889999999999999999999997754 3666777788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
.+.++...+++++|..+.+.+.+..|+++..-
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88888899999999999999999999988554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-16 Score=152.74 Aligned_cols=476 Identities=13% Similarity=0.071 Sum_probs=322.5
Q ss_pred chhHHHHhccCCC--C-CcchHHHHHHHH--HhcCChHHHHHHHHHhHHcC--CCCCcccHHHHHHHhhcCCChhhHHHH
Q 045069 54 LPSARILFDKTPQ--R-SVFLWNSIIRAY--ALAHRFNDAKSLFKNLLRTQ--LKPDNFTYACITRACSENSDLPGLRFV 126 (554)
Q Consensus 54 ~~~A~~~~~~~~~--~-~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (554)
.+.|...|..+.+ | |+.. .+..++ ...+++..|+.+|+...... .+||+. ..+..++.+.|+.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 4778888777652 2 3322 233443 46689999999999977653 333432 2334556788999999999
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHcC---CCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 045069 127 HGGAIVSGLGRDSITSSALVTAYSKL---SLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200 (554)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 200 (554)
|....+.++ .++.++..|...-... ..+..++.++...-. .|++..+.|...|.-.|+++.+..+...+....
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 988887643 2333333332222222 334455555554432 678888999999999999999999998886643
Q ss_pred CC--CChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHH
Q 045069 201 KT--PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWS 275 (554)
Q Consensus 201 ~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~ 275 (554)
.. .-...|..+.+++-..|++++|...|....+.........+--|..+|.+.|+++.+...|+.+ .+.+..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 11 1234577888899999999999999887777654443445566888999999999999999988 334556677
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHH----HHhcCCchHHHHHHH
Q 045069 276 ALITGYSQQG----DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYV----IQHGFELSVMVSSAL 347 (554)
Q Consensus 276 ~l~~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l 347 (554)
+|...|...+ ..++|..++.+..+.- ..|...|..+...+. .++...++..+..+ ...+-.+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7777777664 4566777776665542 334445555544444 44444446666544 455666888899999
Q ss_pred HHHHHccCChHHHHHHHhccCC-------CCcc------hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE-------RNII------TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSAL 413 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l 413 (554)
...+...|++++|...|..... ++.. +--.+...+-..++++.|.+.|..+.+ ..|.-. .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHh
Confidence 9999999999999998887652 2221 222345556667788889899988888 456655 45555
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCChhhHHHHHHHHHh--
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL----PKPVDPAVSGALLSCCHI-- 487 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~-- 487 (554)
+......+...+|...++.... ....++..+..+...+.+...+..|.+-|..+ ...+|+.+...|+..|..
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 4333345677788888888877 45566667777777777777777777744443 334566666666665542
Q ss_pred ----------cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 488 ----------YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 488 ----------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.+..++|++.|.++++.+|.+..+-..++-+++..|++.+|+.+|.+..+...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 24567788888888888888888888888888888888888888888877654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-15 Score=134.29 Aligned_cols=412 Identities=11% Similarity=0.053 Sum_probs=228.5
Q ss_pred hhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--chh-HHHHhccCC-----------------------C
Q 045069 13 SKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNV--LPS-ARILFDKTP-----------------------Q 66 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~-A~~~~~~~~-----------------------~ 66 (554)
+-+.+.+.++.-+++.|++.|++.++..-..|++.-+-.++ +.- -++.|-.|. +
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 34567788889999999999999999888888876554432 221 122332332 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHH
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALV 146 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 146 (554)
.+..+|..+|.++++--..+.|.+++++......+.+..+||.+|.+-+-. ..++++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 233455555555555555555555555555554555555555555443221 1145555555555555555555555
Q ss_pred HHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccch-hh
Q 045069 147 TAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSV-GQ 225 (554)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~ 225 (554)
.+.++.|+++.|.+ .|++++.+|++.|+.|...+|..+|...++.++..+ +.
T Consensus 281 ~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 55555555544433 345566677777777777777777776666666544 22
Q ss_pred HHHHHHHH----hcC----CCchhHHHHHHHHHHhcCChhhHHHHHhhc--------CCCC---hhhHHHHHHHHHhcCC
Q 045069 226 GIHGFCLK----SSF----DSYDYVSSVLVSMYARCNCMNSAYHVFNSL--------FHPD---LVTWSALITGYSQQGD 286 (554)
Q Consensus 226 ~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~---~~~~~~l~~~~~~~g~ 286 (554)
.++..+.. ..+ +.|...+..-+..|.+..+.+-|.++-.-+ ..++ ..-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 23333222 111 123344455555666666666666654433 1122 2335567777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhc
Q 045069 287 YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366 (554)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (554)
.+.-...|+.|.-.-.-|+..+...++++....|.++-..+++..++..|.......-.-+...+++..-
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~---------- 483 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL---------- 483 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC----------
Confidence 8888899999988888888888889999888889998888888888887754444443333333333220
Q ss_pred cCCCCcchHHHHHHHHHc--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChh
Q 045069 367 MSERNIITYNSVILGLGL--HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTE 444 (554)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 444 (554)
.|+...-..+-...++ ..-.+.....-.+|.+..+.| ...+.++..+.+.|+.++|.+++..+.++..--|-..
T Consensus 484 --hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 484 --HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 1111100001011100 000111122223344433332 3344444455666777777776666644322223333
Q ss_pred HHH---HHHHHHHhcCChHHHHHHHHhC
Q 045069 445 HYI---YMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 445 ~~~---~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
..+ -+++.-.+..+...|...++-+
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333 3444445556666666666555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=154.45 Aligned_cols=436 Identities=12% Similarity=0.010 Sum_probs=288.5
Q ss_pred HHHhcCChHHHHHHHHHhHHcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHh
Q 045069 78 AYALAHRFNDAKSLFKNLLRTQLKPDNF-TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLID 156 (554)
Q Consensus 78 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 156 (554)
...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...++..... -+........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 345888888888888888775 34432 2227777777778888888888887711 1122233333355777788888
Q ss_pred HHHHhhcccCC--C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHH
Q 045069 157 EAIKVFDGVSD--P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK 233 (554)
Q Consensus 157 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 233 (554)
+|+++|+++.+ | +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888765 3 3455666677778888888888888887664 45545553333333334444446666666666
Q ss_pred hcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 045069 234 SSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHP-DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASV 312 (554)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (554)
.. +.+...+..++..+.+.|-...|.++...-+.- +...+..+ +.+.|.+..+.. ..++..
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a----~~~~~~----- 259 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMA----VLPTRS----- 259 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhc----cccccc-----
Confidence 54 334455555555666666666665555443210 00000000 111121221111 001000
Q ss_pred HHHHhccCC---cchhHHHHHHHHHh-cCCch-HH----HHHHHHHHHHccCChHHHHHHHhccCCCC--c--chHHHHH
Q 045069 313 LAAAAKSAN---VWPGAVIHGYVIQH-GFELS-VM----VSSALVDMYSKCGYLGLGIQVFETMSERN--I--ITYNSVI 379 (554)
Q Consensus 313 ~~~~~~~g~---~~~a~~~~~~~~~~-~~~~~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~l~ 379 (554)
...+ .+.|+.-++.+... +..|. .. ..--.+-++...|++.++++.|+.+..+. + .+-..+.
T Consensus 260 -----~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 260 -----ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred -----chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0111 23344444444432 11122 11 22234557778899999999999998432 2 3456788
Q ss_pred HHHHcCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC----------CCCC--
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKG-----LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG----------IQAK-- 442 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~-- 442 (554)
.+|...+++++|..+++.+.... ..++......|.-++...+++++|..+++++.+... -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122333467888999999999999999999987311 0122
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 443 -TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 443 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
...+..++..+...|++.+|++.++++. .|.+......+...+...|.+.+|++.++.+....|++.......+.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 3345667888899999999999999975 3778999999999999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHhhcCCc
Q 045069 520 AEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
...|+|++|..+.+.+.+..+.
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCC
Confidence 9999999999999888765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-15 Score=142.49 Aligned_cols=528 Identities=13% Similarity=0.066 Sum_probs=356.1
Q ss_pred HHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhcc---CCCCCcchHHHHHHHHHhcCCh
Q 045069 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDK---TPQRSVFLWNSIIRAYALAHRF 85 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~ 85 (554)
.+..+...|+++.|.++...+++.. +.++..|.+|..+|-.+|+.+++...+-. +.+.|...|-.+-....+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3455666699999999999999875 67888999999999999999999887643 3456778899999999999999
Q ss_pred HHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHH----HHHHHcCCCHhHHHHh
Q 045069 86 NDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSAL----VTAYSKLSLIDEAIKV 161 (554)
Q Consensus 86 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~ 161 (554)
+.|.-.|.+..+.. +++...+--=...|-+.|+...|..-+.++....++.|..-...+ +..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999873 334444445567788999999999999999988654444444444 4456667777889888
Q ss_pred hcccCC-----CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC----------------------ChhhHH----H
Q 045069 162 FDGVSD-----PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTP----------------------DEYTLV----G 210 (554)
Q Consensus 162 ~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------------------~~~~~~----~ 210 (554)
++.... .+...++.++..+.+...++.+......+......+ +...|. .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 877654 455678899999999999999999988887622112 211221 2
Q ss_pred HHHHcccCCccchhhHHHHHHHHhc--CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC----CChhhHHHHHHHHHhc
Q 045069 211 LISGLWEPSLLSVGQGIHGFCLKSS--FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH----PDLVTWSALITGYSQQ 284 (554)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~ 284 (554)
+.-++......+....+........ +..+...+.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2334556666677777777777777 444667888899999999999999999988832 4567889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCcchhHHHHHHHH--------HhcCCchHHHHHHHHHHHHccC
Q 045069 285 GDYGKALYYFRKLNMQGKKAD-PVLIASVLAAAAKSANVWPGAVIHGYVI--------QHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g 355 (554)
|.++.|.+.|+..... .|+ ...-.++-+.+...|+.++|.+.+..+. ..+..|...........+...|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999988765 343 3344556667788899999999888843 3345566655555666677777
Q ss_pred ChHHHHHHHhccCC------------------------------------------------------C-----------
Q 045069 356 YLGLGIQVFETMSE------------------------------------------------------R----------- 370 (554)
Q Consensus 356 ~~~~A~~~~~~~~~------------------------------------------------------~----------- 370 (554)
+.++=..+-..|.. +
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 66553322222110 0
Q ss_pred Cc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHH--H-HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC
Q 045069 371 NI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGL--NPDES--T-FSALLCACCHGGLVNDGREIFTRMTEEYGIQA 441 (554)
Q Consensus 371 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~--~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 441 (554)
+. ..+.-++.++++.+++++|+.+...+.+... .++.. . -...+.+++..+++..|...++.+...++...
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 00 0134566778888999999998888876431 22221 1 23445566788899999888888877533332
Q ss_pred C---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHH--HHHHHHhcCChHHHHHHHHHHHhcCCCC-------
Q 045069 442 K---TEHYIYMVKLLGLAGNLEEAYSFIWSL-PKPVDPAVSGA--LLSCCHIYGNSDLAEIVAHQLFENDPRK------- 508 (554)
Q Consensus 442 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~p~~------- 508 (554)
+ ...|+.....+.+.|+-.--.+++..+ ..+++...... ...-....+.+.-|++.|-++...+|++
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 2 334443333333333333223333221 11111111111 1111223344444444444444444444
Q ss_pred ---------------------------------------chhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 509 ---------------------------------------GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 509 ---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
-.+.+.++.+|...|-..-|..+|+++++..+
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 34667888888899999999999998887643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-13 Score=128.78 Aligned_cols=488 Identities=9% Similarity=0.001 Sum_probs=383.1
Q ss_pred HHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHH
Q 045069 48 YALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLR 124 (554)
Q Consensus 48 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 124 (554)
.....+.++|+.++.+.. +.+...|. +|++..-++.|..++++..+. ++-+...|.+....=-..|+.+...
T Consensus 386 AVelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 334556666777776654 22334443 566677788999999998886 7778888888777777888888888
Q ss_pred HHHHHHH----HhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChhhHHHHHH
Q 045069 125 FVHGGAI----VSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWDKSLQLFD 194 (554)
Q Consensus 125 ~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~ 194 (554)
++++.-. ..|+..+..-|..=...|-+.|..-.+..+...... .-..+|+.-...|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 8776543 457888888887777777777777777766665543 234578888889999999999999998
Q ss_pred HHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcC---CCCh
Q 045069 195 WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLF---HPDL 271 (554)
Q Consensus 195 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~ 271 (554)
...+. .+-+...|......--..|..+.-..+++.++..-. -....|......+-..|++..|..++.... +.+.
T Consensus 541 ~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 541 HALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred HHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 88764 233445565555555566777777788887776643 345667777778888999999999998873 3466
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMY 351 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (554)
..|-+-+..-..+.++++|..+|.+... ..|+...|..-+..---.++.++|.+++++.++.- +.-...|-.+.+.+
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHH
Confidence 7888889999999999999999998875 46777777776776677889999999999888763 45567888899999
Q ss_pred HccCChHHHHHHHhccCC--CCc-chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 045069 352 SKCGYLGLGIQVFETMSE--RNI-ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 428 (554)
...++++.|...|..-.+ |+. ..|-.|...--+.|+...|..++++..-++ +-+...|...|+.-.+.|+.+.|..
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987765 554 467777777778889999999999988753 3355688999999999999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+..+..+ .++.+...|..-|....+.++-......+++.. .|+..+..+...+....+++.|.+.|.++++.+|++
T Consensus 775 lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 775 LMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 9999988 478888888888888888888777777666553 577778888888899999999999999999999999
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeeeecC
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGS 552 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~ 552 (554)
..++..+-..+.+.|.-++-.+++.++... .|.-|-.|..++
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 999999999999999999999999998765 455677776554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=135.04 Aligned_cols=439 Identities=12% Similarity=0.080 Sum_probs=290.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHH-HHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHH----HHHHHHH
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYAC-ITRACSENSDLPGLRFVHGGAIVSGLGRDSITS----SALVTAY 149 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~ 149 (554)
|.+-|..+....+|+..|+-+.+...-||.-.... +.+.+.+.+.+.+|.++++..+..-+..+..+. +.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 45566777888999999999999888888765443 556678889999999999988877555454444 3334457
Q ss_pred HcCCCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHH
Q 045069 150 SKLSLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGI 227 (554)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 227 (554)
.+.|+++.|+..|+...+ |+..+-..|+-++..-|+-++..+.|.+|......||..-|.. ...+.+.. +
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~ddp~~~--l 358 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKDDPDDN--L 358 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcCCcchH--H
Confidence 889999999999998765 7776655566666678999999999999987665665544310 01111100 0
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcC--ChhhH----HHHHhhcCCCChhh-------------HH--------HHHHH
Q 045069 228 HGFCLKSSFDSYDYVSSVLVSMYARCN--CMNSA----YHVFNSLFHPDLVT-------------WS--------ALITG 280 (554)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a----~~~~~~~~~~~~~~-------------~~--------~l~~~ 280 (554)
+.+.++ +..+.-..+.+ +.+++ .++..-++.|+-.. +. .-...
T Consensus 359 l~eai~----------nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 359 LNEAIK----------NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE 428 (840)
T ss_pred HHHHHh----------hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 000000 00000011100 01111 11111111111000 00 01123
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------------------------HHH-----HHHHHhccCCcch
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADPVL-------------------------------IAS-----VLAAAAKSANVWP 324 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------------------------------~~~-----l~~~~~~~g~~~~ 324 (554)
+.++|+++.|+++++-..+..-+.-+.. |+. --......|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 5666677777666665544332221111 111 0111123577888
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
|.+.+++....+-......|| +.-.+...|++++|++.|-.+. ..+......+...|-...+..+|++++-+....
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 888888888776444444454 3334677888999988887654 366667777788888888899999988777663
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHH
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAVSGA 480 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 480 (554)
++.|+.....|...|-+.|+-.+|.+.+-+--. -++.+..+...|...|....-+++|+.+|++.. ..|+..-|..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 444566888899999999999999888766654 467788888889989999999999999998864 5889999988
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 481 LLSCC-HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 481 l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++..| .+.|++++|...|++..+..|.+......|+.++...|. .++.++-+++.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 77665 567999999999999999999999999999988888874 34455544443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-14 Score=129.76 Aligned_cols=453 Identities=13% Similarity=0.042 Sum_probs=285.2
Q ss_pred hHHHHHHHHHHhcCCchhHHHHhccCCC----CCc-chHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc----HHH
Q 045069 39 FYATKLVRLYALNNVLPSARILFDKTPQ----RSV-FLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT----YAC 109 (554)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ 109 (554)
.....|.+-|.-.....+|+..++-+.+ |+. ..--.+...+.+...+.+|+..|+..+..-+..+..+ .+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3344555666666778888888876653 222 2222345677888999999999998887633333333 334
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC----------------CCcchH
Q 045069 110 ITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD----------------PDLVLC 173 (554)
Q Consensus 110 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~ 173 (554)
+...+.+.|.++.|..-|+...+. .|+-.+--.|+-++..-|+.++..+.|..|.. |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 444578999999999999998876 46766655566666777899999998887753 222222
Q ss_pred HHHH-----HHHHhCC--ChhhHHHHHHHHHHCCCCCChhh-HHHH--------------------HHHcccCCccchhh
Q 045069 174 NSMI-----SGFAHCG--FWDKSLQLFDWMLRLGKTPDEYT-LVGL--------------------ISGLWEPSLLSVGQ 225 (554)
Q Consensus 174 ~~li-----~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~-~~~l--------------------l~~~~~~~~~~~a~ 225 (554)
|..| .-+-+.+ +-++++-.-.++..--+.||-.. +..- ...+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2222 1111111 11222222222222222232110 0000 01223455566666
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHh--cCChhhHHHHHhhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045069 226 GIHGFCLKSSFDSYDYVSSVLVSMYAR--CNCMNSAYHVFNSLFHPDL---VTWSALITGYSQQGDYGKALYYFRKLNMQ 300 (554)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 300 (554)
+++.-..+..-......-+.|...+.- ..++..|...-+.....|. .....-...-..+|++++|.+.|++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 665555544433333333333322222 2234444333333222111 11111112234578999999999998765
Q ss_pred CCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHH
Q 045069 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNS 377 (554)
Q Consensus 301 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 377 (554)
.-.-....|+.= -.+-..|++++|+..|-.+...- .-+..+...+...|....+...|++++-+... .|+.....
T Consensus 520 dasc~ealfnig-lt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFNIG-LTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred chHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 433333333332 24567899999999887654321 33567777888999999999999999987664 56678888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH-Hhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL-GLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 456 (554)
|...|-+.|+-.+|.+++-+-... ++-+..|...|...|....-+++++.+|++.. -+.|+..-|..++..| .+.
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhc
Confidence 999999999999999987765553 55577788889988999999999999999874 5899999998887765 568
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 045069 457 GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500 (554)
Q Consensus 457 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (554)
|++.+|.++++... .+.+...+..|++.+...|-. ++.++.++
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 99999999999874 477888888898888777643 34444333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-14 Score=125.24 Aligned_cols=428 Identities=13% Similarity=0.129 Sum_probs=233.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhh--cCCChhhH-HHHHHHHHHhcCCCCHhHHHH
Q 045069 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS--ENSDLPGL-RFVHGGAIVSGLGRDSITSSA 144 (554)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 144 (554)
.+.+=|.++.. ...|..+++.-+|+.|.+.|+..+...--.|+...+ ...++--+ .+.|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 34566666664 467889999999999999988777766655555432 22333322 2334444444422 22232
Q ss_pred HHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchh
Q 045069 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVG 224 (554)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 224 (554)
+.|.+.+ ++-+.......+|.+||.++++--..++|.+++++-.....+.+..+||.+|.+..- ...
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3455444 444444456779999999999999999999999999888889999999999976543 333
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHh----hc----CCCChhhHHHHHHHHHhcCCHHH-HHHHHH
Q 045069 225 QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFN----SL----FHPDLVTWSALITGYSQQGDYGK-ALYYFR 295 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 295 (554)
+++..+|....+.||..++|+++.+..+.|+++.|.+-+- +| ++|...+|..+|..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 7888888888888888888888888877777766544322 22 34555555555555555554433 222333
Q ss_pred HHHhC--C--C---CC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc----CCch---HHHHHHHHHHHHccCChHHH
Q 045069 296 KLNMQ--G--K---KA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG----FELS---VMVSSALVDMYSKCGYLGLG 360 (554)
Q Consensus 296 ~m~~~--~--~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A 360 (554)
++... | . .| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 1 1 11 22334444555555555544444443332110 1111 12233334444444444444
Q ss_pred HHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC
Q 045069 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440 (554)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 440 (554)
...| +.|+-.-+-|+..+-..++++..-.+.++-.-+++..++. +|..
T Consensus 418 ~~~Y-------------------------------~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght 465 (625)
T KOG4422|consen 418 LKWY-------------------------------EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHT 465 (625)
T ss_pred HHHH-------------------------------HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhh
Confidence 4444 4444443444444444444444444444444444444444 2332
Q ss_pred CChhHHHHHHHHHHhcC--------------------ChHHHHH-HHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHH
Q 045069 441 AKTEHYIYMVKLLGLAG--------------------NLEEAYS-FIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVA 498 (554)
Q Consensus 441 ~~~~~~~~l~~~~~~~g--------------------~~~~A~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 498 (554)
-.......+...+++.. ++.++.+ .-.++. ....+...+..+..+.+.|..++|-+++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHH
Confidence 22222222222222221 1111111 111111 2334555556666667777777777777
Q ss_pred HHHHhc---CCCCchhH--HHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 499 HQLFEN---DPRKGAYK--VMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 499 ~~~~~~---~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.-..+. -|..+... ..+.+.-.+..+..+|..+++-+...+...-.
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 777554 24444333 33445555667777777777777666554433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-13 Score=130.92 Aligned_cols=324 Identities=10% Similarity=0.027 Sum_probs=241.8
Q ss_pred HHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCCh
Q 045069 44 LVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL 120 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (554)
....+.-+|+.++|.+++.++. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+.....+.|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 3344445599999999999987 3466889999999999999999988776655442 33557899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCc----c----hHHHHHHHHHhCCChhhHHHH
Q 045069 121 PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDL----V----LCNSMISGFAHCGFWDKSLQL 192 (554)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~ 192 (554)
.+|.-.+...++..+ ++...+---+..|-+.|+...|..-|.++.+.++ . .-..++..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999874 3555555667889999999999999988876222 1 223346677778888999998
Q ss_pred HHHHHHC-CCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhc---------------------------CCCchhHHH
Q 045069 193 FDWMLRL-GKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSS---------------------------FDSYDYVSS 244 (554)
Q Consensus 193 ~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 244 (554)
++..... +-..+...++++...+.+...++.+........... ..++..+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 8887662 234455667777777777788887777766655411 22222331
Q ss_pred HHHHHHHhcCChhhHHHHHhhc------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 045069 245 VLVSMYARCNCMNSAYHVFNSL------FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 318 (554)
-++-++......+....+.... +..+...|.-+..+|.+.|++.+|+.+|..+.....--+...|..+..++..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 1222333333333333333222 2345667888999999999999999999999887666677889999999999
Q ss_pred cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCC
Q 045069 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERN 371 (554)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (554)
.|..+.|.+.++..+... +.+...--.|...+.+.|+.++|.+.++.+..||
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999998765 4556666778888999999999999999988666
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-12 Score=116.76 Aligned_cols=510 Identities=14% Similarity=0.077 Sum_probs=364.4
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchH------------HHHHHH----
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLW------------NSIIRA---- 78 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~------------~~ll~~---- 78 (554)
++..++.+...+++.+ +.+|..|.+-.+.--..|++..|..+..+-. +.+...| .+++.-
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~ 344 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRF 344 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 3444566666666654 3455556555566666777777777765422 1121222 111111
Q ss_pred -------HHhcCC----hHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHH
Q 045069 79 -------YALAHR----FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVT 147 (554)
Q Consensus 79 -------~~~~~~----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 147 (554)
+++.-+ ...=..++++.++. ++-++..|... ....+.+.|.-++....+-- +.+.. |.-
T Consensus 345 ~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~d----Lwl 414 (913)
T KOG0495|consen 345 LPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMD----LWL 414 (913)
T ss_pred CCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHH----HHH
Confidence 111111 12223344444443 33333334333 23345555666666665542 22333 344
Q ss_pred HHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHH----HHHCCCCCChhhHHHHHHHcccCCc
Q 045069 148 AYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDW----MLRLGKTPDEYTLVGLISGLWEPSL 220 (554)
Q Consensus 148 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~ 220 (554)
+|++..-++.|.++++...+ .+...|.+-...=-.+|+.+...+++++ +...|+..+...|..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 55666777888888877655 4666676666666678888888887765 4557888888888888888888899
Q ss_pred cchhhHHHHHHHHhcCCCc--hhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045069 221 LSVGQGIHGFCLKSSFDSY--DYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFR 295 (554)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 295 (554)
.-.+..+...++..|+... ..+|..-...|.+.+.++-|..+|... ...+...|......--..|..+....+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999998888887643 357777788889999999999988876 33566778877777777899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC--CCCcc
Q 045069 296 KLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS--ERNII 373 (554)
Q Consensus 296 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 373 (554)
+....- +-....+.......-..|++..|..++....+.. +-+...|-.-+..-....+++.|..+|.+.. .++..
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 988762 2333445555556667799999999999998886 3478889899999999999999999999877 37777
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
.|.--+...--.+..++|++++++.++ ..|+.+ .|..+.+.+.+.++.+.|...|..-.+ .++..+..|..+.+.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHH
Confidence 777777777778899999999999988 577766 688888888999999999999988766 466678888888888
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---------------------
Q 045069 453 LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG--------------------- 509 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--------------------- 509 (554)
-.+.|..-.|..++++.. .|.+...|...+..-.+.|+.+.|.....++++.-|.+.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 889999999999998854 577888999999999999999999998888877766554
Q ss_pred ---------hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 510 ---------AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 510 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.+...++..+....++++|++.|.+.++.+...-.
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 34455666677777888888888888777654433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-17 Score=147.33 Aligned_cols=257 Identities=17% Similarity=0.088 Sum_probs=114.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA-SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
+...+.+.|++++|++++++......+|+...|. .+...+...++.+.|...++.+.+.+. -++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 3555666777777777775544333233333333 333344556677777777777766552 255566667766 6788
Q ss_pred ChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 356 YLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCHGGLVNDGREIFTR 432 (554)
Q Consensus 356 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 432 (554)
++++|.++++..-+ ++...+..++..+.+.++++++..+++++.... ..++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876542 556667778888889999999999999987633 345666788888899999999999999999
Q ss_pred hHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 433 MTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
..+. .|.+......++..+...|+.+++.++++.... +.++..+..+..++...|+.++|...++++.+.+|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9884 444578888999999999999998888877542 567778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
....++.++...|+.++|.++.+++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-14 Score=131.91 Aligned_cols=279 Identities=14% Similarity=0.044 Sum_probs=228.9
Q ss_pred ChhhHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCcchhHHH-
Q 045069 255 CMNSAYHVFNSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQG--KKADPVLIASVLAAAAKSANVWPGAVI- 328 (554)
Q Consensus 255 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~- 328 (554)
+..+|...|+.++. ....+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 56788888888633 334566778899999999999999999998653 223556788887765432 22222
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC---CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER---NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP 405 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 405 (554)
-+.+.+.. +-++.+|-++.++|.-+++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 33344443 667899999999999999999999999998863 456888888889999999999999999876 556
Q ss_pred CHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHH
Q 045069 406 DES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGAL 481 (554)
Q Consensus 406 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 481 (554)
... +|..+...|.+.++++.|+-.|++..+ +.| +......+...+.+.|+.++|+++++++. .+.++-.-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 554 777888899999999999999999976 455 56777888899999999999999999974 36677777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
+..+...+++++|++.++++.+.-|++..++..++.+|.+.|+.+.|+.-|.-+.+..++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 78888999999999999999999999999999999999999999999999998887766543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-12 Score=124.22 Aligned_cols=485 Identities=14% Similarity=0.053 Sum_probs=244.8
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ----RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
..++..+...|+.|+-.+|..+|.-|+..|+++.|- +|..|.- -+-..++.++.+..++++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 357778888999999999999999999999999998 7776651 13344555666555555555543
Q ss_pred CCCCCcccHHHHHHHhhcCCChhh---HHHHHHHHHH----hcC-----------------CCCHhHHHHHHHHHHcCCC
Q 045069 99 QLKPDNFTYACITRACSENSDLPG---LRFVHGGAIV----SGL-----------------GRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 99 ~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~~~~~li~~~~~~g~ 154 (554)
.|...||..|+.+|.+.||+.. .++.+..+.. .|+ -||.. ..+......|.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 4555666666666666665433 2221111111 111 11111 11122222333
Q ss_pred HhHHHHhhcccC---------------------------------C-CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 045069 155 IDEAIKVFDGVS---------------------------------D-PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200 (554)
Q Consensus 155 ~~~A~~~~~~~~---------------------------------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 200 (554)
++.+++++..++ + +++.+|..++.+-..+|+.+.|..++.+|++.|
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 344443332222 2 666677777777777777777777777777777
Q ss_pred CCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHH
Q 045069 201 KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITG 280 (554)
Q Consensus 201 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 280 (554)
++.+..-|..++-+ .++...+..++..|...|+.|+..++...+..+.++|....+......-.--+...+..+..+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 77777766666655 666666777777777777777777777666666554442222211110000111122222222
Q ss_pred HHhcCCHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc---CCchHHHHHHHHHHHH
Q 045069 281 YSQQGDYGK-----ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG---FELSVMVSSALVDMYS 352 (554)
Q Consensus 281 ~~~~g~~~~-----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 352 (554)
.....+.+. ....+++..-.|+......|. +..-...+|.-+.++++-..+..-. ...++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 111111111 111111111123333332222 2222233555555555555543211 1122333333333333
Q ss_pred ccCChHHHHHHHhccCCCCcchHHHHHHHHHc---CCChHHHHHHHHHH------------HH----cCCCC-------C
Q 045069 353 KCGYLGLGIQVFETMSERNIITYNSVILGLGL---HGFTYQAFEFFRDI------------IE----KGLNP-------D 406 (554)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m------------~~----~g~~p-------~ 406 (554)
+ +...+......-.-.+... .....+..++.... .. ....| -
T Consensus 391 r------------r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 391 R------------RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred H------------HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 2 2221111100000011111 01111111111110 00 00111 0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGAL 481 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l 481 (554)
...-+.++..|+..-+..+++..-+..... -++ ..|..|++.+....+.+.|..+.++... ..+..-+..+
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 011234444555555555555444444332 222 5677888888888888888888777652 2344455666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc---CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFEN---DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.....+.+....+..+++++.+. .|........+.......|+.+.-.++.+-+...|+.-
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 66777777777787777777765 23334455555556667777777777777776666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-12 Score=115.28 Aligned_cols=420 Identities=13% Similarity=0.081 Sum_probs=235.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCC-cccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCC-HhHHHHHHHHH
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD-NFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD-SITSSALVTAY 149 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 149 (554)
+-...+-|.++|++++|++.|.+..+ ..|| +..|.....+|...|+|+++.+--...++. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 34455667889999999999999998 4677 677888888899999999988777666654 343 23455556677
Q ss_pred HcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHH---------HHH--CCCCCChhhHHHHHHHcccC
Q 045069 150 SKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDW---------MLR--LGKTPDEYTLVGLISGLWEP 218 (554)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~--~~~~p~~~~~~~ll~~~~~~ 218 (554)
-..|++++|+.= .+-.++...+....-.--+.+++++ |.+ ..+.|......+-...+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 777888877642 1222222222222222222222222 121 12345544444444333211
Q ss_pred CccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhc-CChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045069 219 SLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC-NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKL 297 (554)
Q Consensus 219 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 297 (554)
-... +...+...|...-..+-..+... ..+..|.+.+.+-. +........ +..+.-. +.|
T Consensus 265 ~~~~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~------~~~~~~~~~--n~~d~~l---e~~ 325 (606)
T KOG0547|consen 265 PKPL--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEEC------LGSESSLSV--NEIDAEL---EYM 325 (606)
T ss_pred cccc--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHh------hhhhhhccc--cccchhH---HHH
Confidence 0000 00000000100001111111110 11222222222110 000000000 0000000 000
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcch
Q 045069 298 NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIIT 374 (554)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 374 (554)
.. +....-.-+.-.|+.-.+..-|+..+.....++ ..|--+..+|....+.++....|+...+ .|..+
T Consensus 326 A~--------al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 326 AE--------ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred HH--------HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 00 000000011223444444444444444332211 1133444456666666666666665543 34455
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
|..-...+.-.+++++|..=|++.++ +.|+.. .|..+--+..+.+.++++...|++.+++ +|..+..|+....++
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEIL 472 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHH
Confidence 65555666666778888888888877 566543 6666666677888999999999999884 777888899999999
Q ss_pred HhcCChHHHHHHHHhCCC-CC-------Chh--hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 454 GLAGNLEEAYSFIWSLPK-PV-------DPA--VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~-~~-------~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
...++++.|.+.|+.... .| ++. ....++. +.-.+++..|+.+++++.+.+|.....+..|+....+.|
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 999999999999887531 11 122 2222222 224489999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhh
Q 045069 524 RWDDVMKLRDDIVD 537 (554)
Q Consensus 524 ~~~~A~~~~~~~~~ 537 (554)
+.++|+++|++...
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-12 Score=113.47 Aligned_cols=254 Identities=14% Similarity=0.086 Sum_probs=207.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHcc
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKC 354 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 354 (554)
+..++....+.+++..-.......|..-+...-+....+.-...++++|+.+|+++.++.. -.|..+|..++ |.+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 3445666667888888888888888766666666666677788899999999999988753 13567777766 4443
Q ss_pred CChH---HHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHH
Q 045069 355 GYLG---LGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 355 g~~~---~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
.+-. -|..++ .+.+-.+.|..++..-|.-.++.++|...|++.++ +.|... .|+.+.+-|....+...|.+-+
T Consensus 311 ~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 3222 122222 23345567778888888999999999999999999 667655 7888889999999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+...+ -.|-|-..|-.+.++|.-.+...-|+-+|++.. .|.|+..|.+|+.+|.+.++.++|+..|+++....-.+
T Consensus 388 RrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99988 356688999999999999999999999999975 47899999999999999999999999999999998888
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..++..|+++|.+.++.++|..++++.++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999999876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-11 Score=108.92 Aligned_cols=446 Identities=10% Similarity=-0.008 Sum_probs=231.7
Q ss_pred hcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHH
Q 045069 81 LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIK 160 (554)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 160 (554)
.++++..|.++|+..+... .-+...|..-+..=.+...+..|..+++..+..=+..|.. |-..+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 3445555666666655543 2244444444555555556666666666655543222222 2222333334466666666
Q ss_pred hhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHh-c-C
Q 045069 161 VFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKS-S-F 236 (554)
Q Consensus 161 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~ 236 (554)
+|++..+ |+..+|++.|..=.+.+.++.|..+|++.+- +.|+..+|..-.+-=-+.|+...+..+++.+++. | -
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 6665543 6666666666666666666666666666554 3466666555555555556666666666555443 1 1
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhc----CCC-ChhhHHHHHHHHHhcCCHHHHHHH--------HHHHHhCCCC
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSL----FHP-DLVTWSALITGYSQQGDYGKALYY--------FRKLNMQGKK 303 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~--------~~~m~~~~~~ 303 (554)
..+...+.+....-..+..++.|.-+|+-. +.. ....|..+...=-+-|+.....+. ++.+... -+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CC
Confidence 112233334444344455555555555433 111 122333333322233333322222 1222222 13
Q ss_pred CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchH------HHHHHHHHHH---HccCChHHHHHHHhccCC--CC-
Q 045069 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSV------MVSSALVDMY---SKCGYLGLGIQVFETMSE--RN- 371 (554)
Q Consensus 304 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~---~~~g~~~~A~~~~~~~~~--~~- 371 (554)
.|-.++-..+..-...|+.+...++++..+..-.+.+. .+|-.+=-++ ....+.+.+.++|+...+ |.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 34445555555555566666666666666554322111 1111111111 134566666666665543 22
Q ss_pred cchHHH----HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHH
Q 045069 372 IITYNS----VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYI 447 (554)
Q Consensus 372 ~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (554)
..||.. ...-..++.+...|.+++-..+. ..|...+|...|..-.+.++++....++++..+ --|-+..+|.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 223332 23333456677777777766554 667777777777777777777777777777766 2344566666
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH---
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLPKPVDPA----VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA--- 520 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--- 520 (554)
.....-...|+.+.|..+|+-+...|... .|...+..-...|.++.|..+|+++++..+... ++...+..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcccc
Confidence 66666667777777777777765544333 334444444566777777777777777655433 4444433322
Q ss_pred --ccC-----------ChhHHHHHHHHHh
Q 045069 521 --EDG-----------RWDDVMKLRDDIV 536 (554)
Q Consensus 521 --~~g-----------~~~~A~~~~~~~~ 536 (554)
+.| ....|..+|+++.
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 233 4556666666653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-13 Score=128.20 Aligned_cols=275 Identities=9% Similarity=-0.007 Sum_probs=191.4
Q ss_pred cCChhhHHHHHhhcCCC--ChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCCcchhHH
Q 045069 253 CNCMNSAYHVFNSLFHP--DLVTWSAL-ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA--SVLAAAAKSANVWPGAV 327 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~ 327 (554)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777776665332 23333333 33447778888888888887654 34443222 33556677788888888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCc-----------chHHHHHHHHHcCCChHHHHHHHH
Q 045069 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI-----------ITYNSVILGLGLHGFTYQAFEFFR 396 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 396 (554)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877766 45567777788888888888888888877764211 123333444444555666667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 045069 397 DIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVD 474 (554)
Q Consensus 397 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 474 (554)
.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++++.+++.. .+.+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3446677888888899999999999999888663 4554322 2233345588899998888764 3556
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+..+..+...|...+++++|.+.|+++.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677888889999999999999999999999887644 55788899999999999999998765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-12 Score=122.16 Aligned_cols=223 Identities=12% Similarity=-0.032 Sum_probs=146.4
Q ss_pred HHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch
Q 045069 248 SMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 324 (554)
..+...|+++.|...++.+ .+.++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------- 228 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------- 228 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------
Confidence 3444555555555555544 1223445555555666666666666666666555433211 111000
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
..+|..++.......+.+...++++.+.+ .+......+...+...|+.++|.+++++..+
T Consensus 229 ----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~- 291 (398)
T PRK10747 229 ----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK- 291 (398)
T ss_pred ----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 01223333333344455666666666653 4666777888888889999999999988887
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHH
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAVSGA 480 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 480 (554)
..|+.... ++.+....++.+++.+..+...++ .+-|+..+..+.+.+.+.|++++|.+.|+... ..|+...+..
T Consensus 292 -~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~ 366 (398)
T PRK10747 292 -RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAW 366 (398)
T ss_pred -cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34555322 233444668889999999888873 55667778888999999999999999998864 4688888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+...+.+.|+.++|.+++++....
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999999988765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-10 Score=102.24 Aligned_cols=490 Identities=10% Similarity=0.031 Sum_probs=346.6
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcc-cHHHHH
Q 045069 36 RDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNF-TYACIT 111 (554)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll 111 (554)
.+...|....+-=-..+++..|..+|++.. ..+...|-.-+..=.++..+..|..+++..... -|-+. .|---+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 355566666666666778888999998865 456777888888888999999999999998875 34333 333333
Q ss_pred HHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccC--CCCcchHHHHHHHHHhCCChhhH
Q 045069 112 RACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVS--DPDLVLCNSMISGFAHCGFWDKS 189 (554)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 189 (554)
-.=-..|++..|.++|+.-.+ ..|+...|.+.|..=.+...++.|..++++.. .|++.+|--...-=-++|....|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 344466999999999988765 47999999999999999999999999999865 49999998888888899999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHc----ccCCccchhhHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChhhHHHHH-
Q 045069 190 LQLFDWMLRLGKTPDEYTLVGLISGL----WEPSLLSVGQGIHGFCLKSSFDS-YDYVSSVLVSMYARCNCMNSAYHVF- 263 (554)
Q Consensus 190 ~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~- 263 (554)
..+|+...+. -.|...-..+..++ .....++.|.-++...+++-... ....|..+...--+-|+.....+..
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 9999987663 22333333333344 34567788888888887765443 2445566665555667655544432
Q ss_pred -------hhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---hccCCcc
Q 045069 264 -------NSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPV-------LIASVLAAA---AKSANVW 323 (554)
Q Consensus 264 -------~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~---~~~g~~~ 323 (554)
+.+.. .|-.+|--.++.--..|+.+...++|++.+.. ++|-.. .|.-+=-++ ....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33333 35556666777777889999999999999865 455321 122111122 3568889
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHH----HccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHH
Q 045069 324 PGAVIHGYVIQHGFELSVMVSSALVDMY----SKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
.+.++++..++. ++....|+.-+--+| .++.++..|.+++..... |-..+|...|..-.+.++++.+..++++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998873 444555555544333 467899999999988763 8888999999999999999999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCh
Q 045069 398 IIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDP 475 (554)
Q Consensus 398 m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 475 (554)
.++ ..| +..+|......-...|+.+.|..+|.-..+...+......+.+.|+.-...|.++.|..+++++.. .+..
T Consensus 463 fle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 463 FLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 999 455 456888888888889999999999999987533344456677777777889999999999999753 4444
Q ss_pred hhHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHhcC--CCCchhHHHHHHH----HHccCChhHHHHHHH
Q 045069 476 AVSGALLSCCH-----IYG-----------NSDLAEIVAHQLFEND--PRKGAYKVMLSNT----YAEDGRWDDVMKLRD 533 (554)
Q Consensus 476 ~~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~----~~~~g~~~~A~~~~~ 533 (554)
..|..+...-. +.+ ....|..+|+++.... ..+..-..+|..+ -...|...+...+-.
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 56666655433 233 5667888888887662 1212333333333 334565555555544
Q ss_pred HH
Q 045069 534 DI 535 (554)
Q Consensus 534 ~~ 535 (554)
+|
T Consensus 621 ~m 622 (677)
T KOG1915|consen 621 KM 622 (677)
T ss_pred hc
Confidence 44
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=132.63 Aligned_cols=252 Identities=17% Similarity=0.154 Sum_probs=109.8
Q ss_pred HHHHHHHhcCChhhHHHHHhhc-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 045069 245 VLVSMYARCNCMNSAYHVFNSL-----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKS 319 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 319 (554)
.+...+.+.|++++|+++++.. ...+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456677778888888888432 1235555666666777788888888888888766533 45556666666 688
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC-----CCCcchHHHHHHHHHcCCChHHHHHH
Q 045069 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS-----ERNIITYNSVILGLGLHGFTYQAFEF 394 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 394 (554)
+++++|..++....+.. +++..+...+..+.+.++++++.++++.+. .++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765543 456667778888889999999999888754 24566788888889999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 045069 395 FRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--K 471 (554)
Q Consensus 395 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 471 (554)
+++.++ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|+.++++.. .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999 5675 557888999999999999999999998885 46777888899999999999999999999964 3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+.|+.....+..++...|+.++|.++.+++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 668889999999999999999999999887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-12 Score=121.36 Aligned_cols=282 Identities=9% Similarity=0.003 Sum_probs=146.9
Q ss_pred hcCChhhHHHHHhhcCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 252 RCNCMNSAYHVFNSLFH--PDL-VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
..|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|...+.+..+....+....-......+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555544422 221 122223344555566666666665554332111111222234445555666666666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC---CcchHHH----HHHHHHcCCChHHHHHHHHHHHHc
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER---NIITYNS----VILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
++.+.+.. +-++.+...+...+...|+++.|.+.+..+.+. +...+.. ...++...+..+.....+..+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66655554 334445555666666666666666665555531 1111110 111111222222223344444432
Q ss_pred CC---CCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHHhCC--CCCC
Q 045069 402 GL---NPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL--LGLAGNLEEAYSFIWSLP--KPVD 474 (554)
Q Consensus 402 g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~--~~~~ 474 (554)
.. +.+...+..+...+...|+.++|.+++++..++ .+.+......++.. ....++.+.+.+.+++.. .+.+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 11 125566666777777777777777777777663 22222110011121 223466666777776643 2344
Q ss_pred h--hhHHHHHHHHHhcCChHHHHHHHH--HHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 475 P--AVSGALLSCCHIYGNSDLAEIVAH--QLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 475 ~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+ ....++...+.+.|++++|.+.|+ .+.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 566677788888888888888888 45556665544 55778888888888888888887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-12 Score=112.60 Aligned_cols=287 Identities=13% Similarity=0.065 Sum_probs=189.7
Q ss_pred HHHHhcCChhhHHHHHhhc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCC
Q 045069 248 SMYARCNCMNSAYHVFNSL----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK--KADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~ 321 (554)
.++......+++..-.+.. ...+...-+....+.-...|+++|+.+|+++.+... --|..+|..++-.-...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-- 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--
Confidence 3444444444444443333 112222223333444556777888888887776631 12445666555432221
Q ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHH
Q 045069 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDI 398 (554)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m 398 (554)
....++.+-.-.--+--+.|+..+.+.|.-.++.++|...|++..+.| ...|+.+..-|...++...|++.++..
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111222221111113345667777778888888888888888877533 346788888888888888888888888
Q ss_pred HHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCh
Q 045069 399 IEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDP 475 (554)
Q Consensus 399 ~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 475 (554)
++ +.| |-..|-.|.++|.-.+...=|+-.|++..+ --|-|...|.+|.++|.+.++.++|++-|.+... ..+.
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 88 555 445888888888888888888888888866 3445688888888888888888888888888653 3345
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFEN-------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+..|...+-+.++.++|.+.+++.++. .|....+..-|+.-+.+.+++++|..+......-+...
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 78888888888888888888888888774 34444455557777788888888888777665544433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=118.70 Aligned_cols=143 Identities=13% Similarity=0.001 Sum_probs=101.8
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHhcCCchHHHHHHHH
Q 045069 358 GLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST--F-SALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 358 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~~~~~~a~~~~~ 431 (554)
+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444544442 36677777888888888888888888888884 444442 1 112222344577788888888
Q ss_pred HhHHHhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 432 RMTEEYGIQAKT--EHYIYMVKLLGLAGNLEEAYSFIWS--L-PKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 432 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..+. .+-|+ ....++...+.+.|++++|.+.|+. . ...|++..+..+...+.+.|+.++|.+++++....
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87763 33344 5667888889999999999999983 3 34778888888888899999999999999987665
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-11 Score=110.59 Aligned_cols=254 Identities=8% Similarity=-0.062 Sum_probs=130.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.- +..+.+|-++.--|...|+..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 33444444444444444444321 2222333333334444444444444444444332 334445555555555556666
Q ss_pred HHHHHHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 359 LGIQVFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 359 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
+|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+.|.++|.+...
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6666665544322 235555666666666666666666555542 111112233334445556666666666666544
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK---------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
-.|.|+...+-+.-.....+.+.+|..+|+.... ..-.+++..|+.+|.+.+.+++|+..+++++...|
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 2333455555555555556666666666655320 01223455556666666666666666666666666
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 507 RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 507 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++.++..++-+|...|+++.|.+.|.+.+-
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 6666666666666666666666666665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=123.12 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHccCChHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKCGYLGLGIQV 363 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 363 (554)
+..+|...|.+... .+.-+......+-.+|...++++++.++|+.+.+... .-+..+|.+.+--+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 56788999988443 3444456777888899999999999999999987632 23566777766544332221111111
Q ss_pred HhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-
Q 045069 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA- 441 (554)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 441 (554)
+-.+.+..+.+|.++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+....++|.|...|+.... +.|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence 1222235678999999999999999999999999998 777 456899999889999999999999998754 233
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+-.+|.-+.-.|.++++++.|+-.|+++.. |.+......++..+.+.|+.++|+++++++...+|.++-.-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 234455678889999999999999999753 667778888888999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHhhcC
Q 045069 520 AEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~ 539 (554)
...+++++|+..++++.+.-
T Consensus 568 ~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELV 587 (638)
T ss_pred HhhcchHHHHHHHHHHHHhC
Confidence 99999999999999998754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-10 Score=101.26 Aligned_cols=287 Identities=11% Similarity=-0.023 Sum_probs=174.7
Q ss_pred CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHH
Q 045069 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHV 262 (554)
Q Consensus 183 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 262 (554)
.|+|.+|+++..+-.+.+-.| ...|..-.++.-+.|+.+.+-.++.++.+....++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555554443333222 1222233333334444444444444443333333333444444455555555555544
Q ss_pred Hhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc
Q 045069 263 FNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL 339 (554)
Q Consensus 263 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (554)
+.++ .+.++........+|.+.|++.....++.+|.+.|.--++..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 4443 3345566666667777777777777777777666644333211 01
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
-..+|..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+++..|+..+ .-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 12345555555555555555556666666 35566677778888888999999999988888877776222 234
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL-PKPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
+.+.++...-.+..++..+. .+.++..+.+|...|.+.+.|.+|.+.|+.. ...|+..++..+..++.+.|+...|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 56778888777777777764 4444577788888888888888888888764 45778888888888888888888888
Q ss_pred HHHHHHHhc
Q 045069 496 IVAHQLFEN 504 (554)
Q Consensus 496 ~~~~~~~~~ 504 (554)
+..++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 888777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-09 Score=100.09 Aligned_cols=512 Identities=12% Similarity=0.111 Sum_probs=276.5
Q ss_pred HHHHHhhhccchhhHHHHHHHH-HHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 045069 8 LVLELSKSHQSLSRTKELHALV-AKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFN 86 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 86 (554)
.++..+-..+++...++.++.. .+..+.....+|...+......|-++-+.+++.+..+-++..-+--|..++..++++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 4455566666666665444433 444555556677777777777777777777777766556666777778888888888
Q ss_pred HHHHHHHHhHHcC------CCCCcccHHHHHHHhhcCCChh---hHHHHHHHHHHhcCCCCH--hHHHHHHHHHHcCCCH
Q 045069 87 DAKSLFKNLLRTQ------LKPDNFTYACITRACSENSDLP---GLRFVHGGAIVSGLGRDS--ITSSALVTAYSKLSLI 155 (554)
Q Consensus 87 ~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 155 (554)
+|.+.+....... -+.+-..|..+-...++..+.- ....+++.+... -+|. ..|.+|.+-|.+.|++
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 8888777765431 2233445555555555443332 233333333322 2333 4678888888999999
Q ss_pred hHHHHhhcccCC--CCcchHHHHHHHHHhC----------------C------ChhhHHHHHHHHHHCCC----------
Q 045069 156 DEAIKVFDGVSD--PDLVLCNSMISGFAHC----------------G------FWDKSLQLFDWMLRLGK---------- 201 (554)
Q Consensus 156 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~----------------~------~~~~a~~~~~~m~~~~~---------- 201 (554)
+.|..+|++... ..+.-|..+.++|++- + +++-.+.-|+.+.+.+.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 999988877654 2333344433333321 1 12222333443333210
Q ss_pred CC-ChhhHHHHHHHcccCCccchhhHHHHHHHHhc-----CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCC-----
Q 045069 202 TP-DEYTLVGLISGLWEPSLLSVGQGIHGFCLKSS-----FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPD----- 270 (554)
Q Consensus 202 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 270 (554)
.| +..+|..-+ -...|+..+....+.++++.- +..-...|..+.+.|-..|+++.|..+|++..+-+
T Consensus 345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 01 111111111 123445555555666555431 11123467788888999999999999998884422
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHHHhccCCcchhHHHHHH
Q 045069 271 --LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD-----------------PVLIASVLAAAAKSANVWPGAVIHGY 331 (554)
Q Consensus 271 --~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 331 (554)
..+|..-...=.++.+++.|+.+++......-.|. ...+...+..--..|-++....+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 23455555555667788888888776643211111 11122223333344556666666666
Q ss_pred HHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC----CCcc-hHHHHHHHHHc---CCChHHHHHHHHHHHHcCC
Q 045069 332 VIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE----RNII-TYNSVILGLGL---HGFTYQAFEFFRDIIEKGL 403 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~ 403 (554)
+.+..+.....+.| ..-.+....-++++.++|++-.. |++. .|+..+.-+.+ ....+.|..+|++.++ |+
T Consensus 503 iidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 66655432222222 22223445557777777776553 4442 55555444432 2357778888888777 55
Q ss_pred CCCHHHHHHHH--HHHhcCCchHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhH
Q 045069 404 NPDESTFSALL--CACCHGGLVNDGREIFTRMTEEYGIQAK--TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVS 478 (554)
Q Consensus 404 ~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 478 (554)
+|...-+..|+ ..-.+.|-...|..++++... ++++. ..+|+..|.-....=-...-..++++... -|+...-
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 55443222222 222345777777778877665 45543 34566555433322222222233333211 2233322
Q ss_pred HHH---HHHHHhcCChHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHccCChhH
Q 045069 479 GAL---LSCCHIYGNSDLAEIVAHQLFEN-DPR-KGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 479 ~~l---~~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~ 527 (554)
... ...-.+.|..+.|..+|.-.-+. +|. ++.++...-..-.+.|+-+.
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 222 22234667788888888777776 342 45566666666677777333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-11 Score=117.99 Aligned_cols=255 Identities=12% Similarity=0.053 Sum_probs=173.6
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCC
Q 045069 90 SLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPD 169 (554)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 169 (554)
+++-.+...|+.||..||..++.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667788899999999999999999999999888 8888888888888888899998888888877665 578
Q ss_pred cchHHHHHHHHHhCCChhh---HHHHHHHHH----HCCCCCChhhHHHHHHHcccCCccch--------hhHHHHHHHHh
Q 045069 170 LVLCNSMISGFAHCGFWDK---SLQLFDWML----RLGKTPDEYTLVGLISGLWEPSLLSV--------GQGIHGFCLKS 234 (554)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~--------a~~~~~~~~~~ 234 (554)
..+|..|..+|...||... +.+.+.... ..|+-.-...+-..++++-. -..+. -+.++....+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPH-SLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcc-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988654 222222221 12222222222222222211 11110 11223333333
Q ss_pred c--CCCchhHHHH--HHHHHH-hcCChhhHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 045069 235 S--FDSYDYVSSV--LVSMYA-RCNCMNSAYHVFNSLFH-PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308 (554)
Q Consensus 235 ~--~~~~~~~~~~--l~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 308 (554)
+ .+........ .++-.. ....+++-........+ +++.+|.+++.+-..+|+.+.|..++.+|.+.|.+.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 3 1111110001 111111 11233333444444444 8999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC
Q 045069 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY 356 (554)
Q Consensus 309 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (554)
|..++-+ .++...++.+++-|...|+.|+..|+...+..+..+|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888766 88888899999999999999999999988888887655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.7e-11 Score=100.55 Aligned_cols=288 Identities=15% Similarity=0.141 Sum_probs=185.2
Q ss_pred CChhhHHHHHhhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCcchhHH
Q 045069 254 NCMNSAYHVFNSLFHPDLVTW---SALITGYSQQGDYGKALYYFRKLNMQGKKADP---VLIASVLAAAAKSANVWPGAV 327 (554)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~ 327 (554)
.+.++|.+.|-+|.+.|+.++ -+|.+.|.+.|..|+|+.+-+.+.++.--+.. .....+..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456666666666644444333 34556666667777777666666543211111 123334455666677777777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc--------hHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNII--------TYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
+|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+.. .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777766544 334455666777788888888887777765543322 34445555556677888888888888
Q ss_pred HcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhh
Q 045069 400 EKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAV 477 (554)
Q Consensus 400 ~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 477 (554)
+ ..|+.. .-..+.+.....|+++.|.+.++...+. +...-+.+...|..+|...|+.++...++.++. ..+.+..
T Consensus 208 q--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 208 Q--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred h--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 7 345443 3445566677888888888888888774 444446677788888888888888888887754 3555555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH--ccCChhHHHHHHHHHhhcCCccCCC
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA--EDGRWDDVMKLRDDIVDNGLRKEAG 545 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ 545 (554)
...+........-.+.|...+.+-+...|.-...+..+-.-.. ..|++.+.+..++.|+...++..|.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 5555555555566677777877777778876666665543333 3456888888888888776666553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-10 Score=100.28 Aligned_cols=278 Identities=10% Similarity=0.033 Sum_probs=205.3
Q ss_pred cCChhhHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHH
Q 045069 253 CNCMNSAYHVFNSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
.|++..|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+..-.++...+-+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4677777777665522 2333444455566777888888888887776544556666666677777888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCc-----------chHHHHHHHHHcCCChHHHHHHHHHH
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI-----------ITYNSVILGLGLHGFTYQAFEFFRDI 398 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m 398 (554)
..+.+.+ +-.+.+.....++|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8777776 55667778888888888888888888888875222 35777777777777777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChh
Q 045069 399 IEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPA 476 (554)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 476 (554)
..+ .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+. ..++ ...+-++.+.-++..+... .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 654 5556666777888889999999999999999886 666661 1122 2345566666665555532 255668
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.+.+|...|.+++.+.+|.+.++.+++..| +.+.+..++.++.+.|+..+|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 899999999999999999999998888776 4678889999999999999999999998743
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-09 Score=98.60 Aligned_cols=437 Identities=13% Similarity=0.079 Sum_probs=259.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHH--HHHHHH--
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA--LVTAYS-- 150 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~-- 150 (554)
=+.-+...|++++|.....++...+ +-+...+..=+.++.+.+.+++|..+.+.- + -..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHH
Confidence 3455667788899999888888764 334556777777788888888888555432 1 1112222 234444
Q ss_pred cCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHcccCCccchhhHHHH
Q 045069 151 KLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTP-DEYTLVGLISGLWEPSLLSVGQGIHG 229 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (554)
+.+..|+|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... .+ .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----H
Confidence 67889999999886665665566777788889999999999999987664321 111111122111100 00 0
Q ss_pred HHHHhcCCCc--hhHHHHHHHHHHhcCChhhHHHHHhhc--------CCCCh----------hhHHHHHHHHHhcCCHHH
Q 045069 230 FCLKSSFDSY--DYVSSVLVSMYARCNCMNSAYHVFNSL--------FHPDL----------VTWSALITGYSQQGDYGK 289 (554)
Q Consensus 230 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~----------~~~~~l~~~~~~~g~~~~ 289 (554)
.+......|+ -..+-.....+...|++.+|+++++.. .+.|. .+--.|...+...|+-.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1111222221 112222344567788999998888776 11111 123345667788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HHHHhccCCcch--hHHHHHHHH-----------HhcCCchHHHHHHHHHHHHc
Q 045069 290 ALYYFRKLNMQGKKADPVLIASV---LAAAAKSANVWP--GAVIHGYVI-----------QHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~l---~~~~~~~g~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~ 353 (554)
|..++...++.. .+|....... +-+.....++-. ++..++... .+.-.-....=+.++..|
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-- 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-- 319 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999998775 3443222222 222222222222 111111111 110011111223333333
Q ss_pred cCChHHHHHHHhccCCCC-cchHHHHHHH-HH-cCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHH
Q 045069 354 CGYLGLGIQVFETMSERN-IITYNSVILG-LG-LHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~-~~~~~~l~~~-~~-~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~ 428 (554)
.+..+.+.++-....... ...+.+++.. .. +...+..+.+++...-+. .|.. ......+......|+++.|.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 345566666666665322 2333444433 22 223577888888877764 3443 355566677788999999999
Q ss_pred HHH--------HhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-ChhhHHHHHHHHHhcCCh
Q 045069 429 IFT--------RMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--------KPV-DPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 429 ~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~~~~ 491 (554)
++. .+.+. +.. +.+..++...+.+.++.+.|..++.+.. ..+ -..++..+...-.+.|+.
T Consensus 398 il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 999 44442 333 4556677778888887766666665542 121 122333344445677999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
++|...++++++.+|++......++.+|++. +.+.|..+-+.+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999999887 778887776554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-11 Score=107.40 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=160.4
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 415 (554)
.....+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456667777888888888888888887653 3 34567778888889999999999999988853 234557777888
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
.+...|++++|.+.+++.......+.....+..+...+...|++++|.+.+++.. .+.+...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999987631223345567778888999999999999998864 24456778888899999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888888888899999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-10 Score=96.67 Aligned_cols=287 Identities=14% Similarity=0.116 Sum_probs=170.2
Q ss_pred CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCC---HhHHHHHHHHHHcCCCHhHHH
Q 045069 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD---SITSSALVTAYSKLSLIDEAI 159 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 159 (554)
++.++|.++|-+|.+.. +-+..+.-+|.+.+.+.|.++.|.++...+.++.--+. ....-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56777777777777642 12334455677777777777777777777766421111 112334556677777788888
Q ss_pred HhhcccCC-C--CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcC
Q 045069 160 KVFDGVSD-P--DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSF 236 (554)
Q Consensus 160 ~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 236 (554)
.+|..+.+ + -..+...|+..|-...+|++|++.-+++.+.+..+ |+.-|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~----~~~eI------------------------ 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT----YRVEI------------------------ 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc----chhHH------------------------
Confidence 88777765 2 23345567777777788888877777776554332 22111
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA-SVLAA 315 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~ 315 (554)
...|.-|...+....+.++|..++.+..+.+ |+.+--+ .+-..
T Consensus 180 ----------------------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v 223 (389)
T COG2956 180 ----------------------------------AQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRV 223 (389)
T ss_pred ----------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHH
Confidence 1123334444445555666666666555442 2222111 22234
Q ss_pred HhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHH
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
....|+++.|.+.++...+.+...-..+...|..+|...|+.++....+..+.+ ++...-..+...-......+.|..
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~ 303 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQA 303 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHH
Confidence 455566666666666666665555566667777777777777777777776653 444455555555445555666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc---CCchHHHHHHHHHhHHH
Q 045069 394 FFRDIIEKGLNPDESTFSALLCACCH---GGLVNDGREIFTRMTEE 436 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~ 436 (554)
.+.+-+. -+|+...+..++..... .|...+-...++.|...
T Consensus 304 ~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 304 YLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6666555 46888888888876543 34455666666666653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-10 Score=103.90 Aligned_cols=217 Identities=11% Similarity=-0.028 Sum_probs=157.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
.-.|+.-.|...|+..+.....++.. |-.+...|....+.++....|....+.+ +-++.+|..-.+++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 34677777777887777665444432 5566667778888888888888887766 456677777777788888888888
Q ss_pred HHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 362 QVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 362 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
.-|++... .++..|-.+..+..+.+++++++..|++..++ ++..+..|+.....+...++++.|.+.|+...+
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 88888775 34456666666777788889999999988875 555566888888888889999999998888866
Q ss_pred CCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 439 IQAK---------TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 439 ~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+.|+ +.+...++..- -.+++..|.+++++... +.....+..|...-.+.|+.++|+++|++....-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2232 22222232222 23888889999888653 5566778888888888999999999998887763
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.6e-09 Score=99.04 Aligned_cols=403 Identities=12% Similarity=0.047 Sum_probs=262.8
Q ss_pred hcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhh-H
Q 045069 133 SGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYT-L 208 (554)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~ 208 (554)
..+.-|..+|..|.-+..+.|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-......|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556888898898999999999999999998765 4456788888899999999999999988765443354443 3
Q ss_pred HHHHHHcc-cCCccchhhHHHHHHHHh--c--CCCchhHHHHHHHHHHhcC-----------ChhhHHHHHhhcCC---C
Q 045069 209 VGLISGLW-EPSLLSVGQGIHGFCLKS--S--FDSYDYVSSVLVSMYARCN-----------CMNSAYHVFNSLFH---P 269 (554)
Q Consensus 209 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~---~ 269 (554)
-..-..|. +.+..+++..+-..+.+. + -...+..+..+.-+|...- ...++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333333 456666666666555552 1 1223344555555554321 12345556666522 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh-cCC----------
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH-GFE---------- 338 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 338 (554)
|+.+-..+.--|+..++.+.|.+..++..+.+-.-+...+..+.-.+...+++..|+.+.+..... |..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 333333334457778899999999999998877788888888888889999999999988776532 210
Q ss_pred --------chHHHHHHHHHHHHc------cCChHHHHHHHhccC----C--CCcchHHHHHHHHHcCCChHHHHHHHHHH
Q 045069 339 --------LSVMVSSALVDMYSK------CGYLGLGIQVFETMS----E--RNIITYNSVILGLGLHGFTYQAFEFFRDI 398 (554)
Q Consensus 339 --------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 398 (554)
-...|+..++..+-. .++-....+....+. + ..+.++..+..-....+ ..+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-c
Confidence 011122222222211 111111122222211 0 11122322222221111 00000000 1
Q ss_pred HHcCCCCCH--------HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 399 IEKGLNPDE--------STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 399 ~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
...-+.|.+ ..|......+.+.+..++|...+.+... -.+.....|......+...|.+++|.+.|....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111122221 1245566677888999999988888876 356667888888889999999999999998854
Q ss_pred --CCCChhhHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 471 --KPVDPAVSGALLSCCHIYGNSDLAEI--VAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.|.+..+..++...+...|+...|.. ++..+++.+|.++..|..++.++.+.|+.++|.+.|+...+...
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 46778889999999999999888888 99999999999999999999999999999999999999987543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=95.12 Aligned_cols=132 Identities=15% Similarity=0.057 Sum_probs=79.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
--.++.+.+.-..++++++.+++....--...|...| .+..+.+..|.+.+|+++|-.+... .++.+..-...|.++|
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCY 438 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHH
Confidence 3445555566666677777777666654333333333 3556777777777777777766542 3333333334566677
Q ss_pred HhcCChHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 454 GLAGNLEEAYSFIWSLPKPVDPAVSGA-LLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.++++.+-|..++-++..+.+..++.. +...|.+.+.+--|-..|..+...+|.
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 777777777777766665444444433 334577777777777777776666653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-10 Score=109.25 Aligned_cols=231 Identities=14% Similarity=0.142 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHh-----c-CCchH-HHHHHHHHHHHccCChHHHHHHHhccCC-------CC-
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQH-----G-FELSV-MVSSALVDMYSKCGYLGLGIQVFETMSE-------RN- 371 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~- 371 (554)
.+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++.+|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777777778888888777776554 1 12333 2334577788888888888888887652 22
Q ss_pred ---cchHHHHHHHHHcCCChHHHHHHHHHHHH-----cCCC-CCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhC--C
Q 045069 372 ---IITYNSVILGLGLHGFTYQAFEFFRDIIE-----KGLN-PDES-TFSALLCACCHGGLVNDGREIFTRMTEEYG--I 439 (554)
Q Consensus 372 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 439 (554)
..+++.|...|.+.|++++|..++++..+ .|.. |... .++.+...|...+++++|..++++..+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 23667777788888888888887777654 1222 2222 366777788899999999999887765422 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 045069 440 QAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK----------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN- 504 (554)
Q Consensus 440 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 504 (554)
.++ ..+++.|...|...|++++|.++++++.. ......++.+...|.+.++..+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 46788999999999999999999988631 123456788888999999999999998887765
Q ss_pred ---C---CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 505 ---D---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 505 ---~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
. |+....|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 45557888999999999999999999998873
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-09 Score=92.35 Aligned_cols=308 Identities=9% Similarity=-0.056 Sum_probs=210.4
Q ss_pred CCChhhHHHHHHHccc--CCccchhhHHHHHHHHh-cCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHH---
Q 045069 202 TPDEYTLVGLISGLWE--PSLLSVGQGIHGFCLKS-SFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWS--- 275 (554)
Q Consensus 202 ~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 275 (554)
.|...+....+.+++. .++...+...+-.+... -++.+......+.+++...|+.++|+..|++....|+.+..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444444554432 33444444444444333 46677788889999999999999999999887444433322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
.....+.+.|+.++...+...+.... +-+...+..-....-..++++.|+.+-++.++.+ +.+...|-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 22334567788888777777665432 1122222222333345677788888777777654 344555555566777888
Q ss_pred ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-cCCchHHHHHHH
Q 045069 356 YLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL-CACC-HGGLVNDGREIF 430 (554)
Q Consensus 356 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~ 430 (554)
+.++|.-.|+.... -+..+|..|+.+|...|++.+|...-+...+. +.-+..+...+. ..|. ...--++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99998888886553 46778999999999999999988888776663 344555665552 3333 233447788888
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 431 TRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSL-PKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
++... +.|+ ....+.+...+...|+.++++.++++. ...+|....+.|...+...+.+++|.+.|..++..+|++
T Consensus 428 ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 87754 4555 566778888888999999999999885 457888888999999999999999999999999999988
Q ss_pred chhHHHH
Q 045069 509 GAYKVML 515 (554)
Q Consensus 509 ~~~~~~l 515 (554)
......|
T Consensus 505 ~~sl~Gl 511 (564)
T KOG1174|consen 505 KRTLRGL 511 (564)
T ss_pred hHHHHHH
Confidence 7776666
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-09 Score=99.81 Aligned_cols=430 Identities=11% Similarity=0.037 Sum_probs=212.2
Q ss_pred HHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcC----
Q 045069 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKL---- 152 (554)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 152 (554)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.++. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3455677777777777664443 3323334445566677777777777777777777632 444445555544222
Q ss_pred -CCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCCh-hhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHH
Q 045069 153 -SLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFW-DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIH 228 (554)
Q Consensus 153 -g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 228 (554)
.+.+....+++++.. |...+...+.-.+.....+ ..+..++..+...|+++ +|+.+-..|...........++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 235555666665543 3222222222222221122 23444555666666543 3333333333333322222222
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 045069 229 GFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDL--VTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD- 305 (554)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~- 305 (554)
....... ...+.+.... -..-..|.. .++..+...|...|++++|++++++.++. .|+
T Consensus 167 ~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 167 EEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 2222110 0000000000 000011222 23345566666677777777777766655 344
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc----------hH
Q 045069 306 PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNII----------TY 375 (554)
Q Consensus 306 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~ 375 (554)
+..|..-...+-+.|++.+|...++.....+ .-|...=+-.+..+.++|++++|.+++....+++.. .|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 4456666666677777777777777666655 345555555666666777777777777666654321 11
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHHc--CC---CCCHHH----------HHHHHHHHhcCCc-------hHHHHHHHH
Q 045069 376 --NSVILGLGLHGFTYQAFEFFRDIIEK--GL---NPDEST----------FSALLCACCHGGL-------VNDGREIFT 431 (554)
Q Consensus 376 --~~l~~~~~~~~~~~~a~~~~~~m~~~--g~---~p~~~~----------~~~ll~~~~~~~~-------~~~a~~~~~ 431 (554)
.....+|.+.|++..|++.|....+. .+ .-|.++ |..+++..-+... ...|.+++-
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl 386 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYL 386 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 22345667777777776655554431 01 112222 2223322111111 123444544
Q ss_pred HhHHHhCCCC-----------ChhHHHHHHHHH---HhcCChHHHHHHHHh-----------C----CCCCChhhHHHHH
Q 045069 432 RMTEEYGIQA-----------KTEHYIYMVKLL---GLAGNLEEAYSFIWS-----------L----PKPVDPAVSGALL 482 (554)
Q Consensus 432 ~~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~~~~~~~~~~l~ 482 (554)
++.+...... +..--..+..-. .+....+++.+.-.+ . +.+.|.... .
T Consensus 387 ~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~---G 463 (517)
T PF12569_consen 387 ELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL---G 463 (517)
T ss_pred HHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc---H
Confidence 4433200000 000001111101 111111122211100 0 012222222 2
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 483 SCCHIYG-NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 483 ~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
.-+.+.. =.++|..+++-+.+..|++..++..-.++|.+.|++--|++.+.+
T Consensus 464 ekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 2223333 477899999999999999999999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-12 Score=81.77 Aligned_cols=50 Identities=30% Similarity=0.617 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhc
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSE 116 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (554)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888888888888888888777764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-12 Score=79.86 Aligned_cols=50 Identities=28% Similarity=0.650 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 045069 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 419 (554)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-08 Score=93.02 Aligned_cols=425 Identities=12% Similarity=0.066 Sum_probs=236.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHc
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSK 151 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 151 (554)
|..++..| ..+++...+.+.+.+.+. .+-...|.....-.+...|+-++|....+...+.++. +.++|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 44444444 556677777777776663 2223344444444455667778887777666664433 56677777777777
Q ss_pred CCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHcccCCccchhhHH
Q 045069 152 LSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD-EYTLVGLISGLWEPSLLSVGQGI 227 (554)
Q Consensus 152 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 227 (554)
..++++|++.|..... .|...|.-+.-.-++.|+++.....-..+.+. .|. ...|.....+..-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888876544 45556666665666677777776666666553 232 34455555566666777777777
Q ss_pred HHHHHHhc-CCCchhHHHHHH------HHHHhcCChhhHHHHHhhcCC--CChh-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 045069 228 HGFCLKSS-FDSYDYVSSVLV------SMYARCNCMNSAYHVFNSLFH--PDLV-TWSALITGYSQQGDYGKALYYFRKL 297 (554)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m 297 (554)
.+...+.. -.|+...+.-.. ....+.|..+.|.+.+....+ -|-. .-..-...+.+.++.++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 76666554 233333332211 122344444555444443311 0111 1112233344455555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH-HHHhccCC--CCcch
Q 045069 298 NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI-QVFETMSE--RNIIT 374 (554)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~~~ 374 (554)
... .||..-|... +..++.+-.+.-++. .+|....+ |....
T Consensus 246 l~r--nPdn~~Yy~~----------------------------------l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 246 LER--NPDNLDYYEG----------------------------------LEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred Hhh--CchhHHHHHH----------------------------------HHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 443 2443333332 223332222222222 33433331 11110
Q ss_pred HHHH-HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh-C------------CC
Q 045069 375 YNSV-ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY-G------------IQ 440 (554)
Q Consensus 375 ~~~l-~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~------------~~ 440 (554)
-..+ +.......-.+..-+++..+.+.|+++-...+.++ |-.....+-..++.-.+.... | -+
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0000 11111112234455667777777766533333332 222111111111111111100 1 14
Q ss_pred CChhHH--HHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 441 AKTEHY--IYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 441 ~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
|+...| ..++..+-+.|+++.|..+++.... |.-+..|..-.+.+...|+.++|...++++.+.+-.|..+...-+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 554444 4577888899999999999998753 333445555667788899999999999999999888888887888
Q ss_pred HHHHccCChhHHHHHHHHHhhcCC
Q 045069 517 NTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.-..++++.++|.+++.++.+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 889999999999999999988775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-10 Score=111.21 Aligned_cols=241 Identities=10% Similarity=-0.000 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh---------ccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 286 DYGKALYYFRKLNMQGKKADP-VLIASVLAAAA---------KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
+.++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467888888888765 4443 34444444332 2344678888888888776 456777888888889999
Q ss_pred ChHHHHHHHhccCC--CC-cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHH
Q 045069 356 YLGLGIQVFETMSE--RN-IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 356 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++++|...|++..+ |+ ...+..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998774 43 45678888899999999999999999998 556543 33344445667899999999999
Q ss_pred HhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhc---C
Q 045069 432 RMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVD-PAVSGALLSCCHIYGNSDLAEIVAHQLFEN---D 505 (554)
Q Consensus 432 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 505 (554)
+.... .+| ++..+..+..++...|+.++|...+.++.. .|+ ......+...+...| +.|...++.+.+. .
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98763 334 455677888889999999999999988643 333 334455555566666 4788878777776 3
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
|.++.. +..+|.-.|+-+.+... +++.+.+
T Consensus 507 ~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 444433 55567778888877777 7777664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-10 Score=103.35 Aligned_cols=233 Identities=10% Similarity=-0.057 Sum_probs=135.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCCh
Q 045069 281 YSQQGDYGKALYYFRKLNMQG-KKAD--PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (554)
....+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334556677777777776542 2222 2345556666777777777777777777665 34566777777777777777
Q ss_pred HHHHHHHhccCC--CC-cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 358 GLGIQVFETMSE--RN-IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 358 ~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
++|...|+...+ |+ ..+|..+...+...|++++|++.+++..+ ..|+..........+...++.++|...|++..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777777653 32 34666666777777777777777777776 34543322222222344567777777776654
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 435 EEYGIQAKTEHYIYMVKLLGLAGNLEE--AYSFIWSL-PK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
. ..+|+...+ .+.. ...|+..+ +.+.+.+. .. +.....|..++..+.+.|++++|+..|+++++.+|
T Consensus 193 ~--~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4 233332221 2222 22344332 23222221 11 12334667777777777777777777777777775
Q ss_pred -CCchhHHHHHHHHHc
Q 045069 507 -RKGAYKVMLSNTYAE 521 (554)
Q Consensus 507 -~~~~~~~~l~~~~~~ 521 (554)
+.......+++....
T Consensus 268 ~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 268 YNFVEHRYALLELALL 283 (296)
T ss_pred chHHHHHHHHHHHHHH
Confidence 444444445444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-07 Score=87.33 Aligned_cols=428 Identities=12% Similarity=0.063 Sum_probs=263.3
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHh-cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhC
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVS-GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 183 (554)
..|..-+..+.++|++......|+..+.. .+.....+|...+......|-++-++.++++..+.++..-+..|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34555566666777777777777766544 23333446666666666667777788888777776666677777778888
Q ss_pred CChhhHHHHHHHHHHC------CCCCChhhHHHHHHHcccCCccchh---hHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 045069 184 GFWDKSLQLFDWMLRL------GKTPDEYTLVGLISGLWEPSLLSVG---QGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254 (554)
Q Consensus 184 ~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 254 (554)
+++++|-+.+...... ..+.+...|..+....++..+.-.. ..+++.+...-...-...|.+|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 8888887777766432 1233444454444444443333222 222222222222223467889999999999
Q ss_pred ChhhHHHHHhhcCC--CChhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC--------
Q 045069 255 CMNSAYHVFNSLFH--PDLVTWSALITGYSQQ----------------G------DYGKALYYFRKLNMQGK-------- 302 (554)
Q Consensus 255 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~m~~~~~-------- 302 (554)
.++.|.++|++... .++.-|..+.++|+.- | +++-.+..|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999988633 2333344444444321 1 12223333444333210
Q ss_pred ---CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc------hHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc
Q 045069 303 ---KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL------SVMVSSALVDMYSKCGYLGLGIQVFETMSERNII 373 (554)
Q Consensus 303 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 373 (554)
+-+..++..- .-...|+..+-...+.++.+. +.| -...|..+.+.|...|+++.|..+|++..+-+-.
T Consensus 343 RQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 1111112111 112234555556666666543 111 2356788899999999999999999998874443
Q ss_pred h-------HHHHHHHHHcCCChHHHHHHHHHHHHcCC----------CC-------CHHHHHHHHHHHhcCCchHHHHHH
Q 045069 374 T-------YNSVILGLGLHGFTYQAFEFFRDIIEKGL----------NP-------DESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 374 ~-------~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----------~p-------~~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
+ |..-...-.++.+++.|+++.++.....- .| +...|..+++.-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 3 44444445567889999998888764211 11 122355666666677888889999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCChhhHHHHHHHHHh---cCChHHHHHHHHHHH
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVSGALLSCCHI---YGNSDLAEIVAHQLF 502 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 502 (554)
++++.+- .+. ++.+.-..+..+....-++++.+++++-.. +.-...|+..+.-+.+ ....+.|..+|++++
T Consensus 500 YdriidL-ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 500 YDRIIDL-RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHH-hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999883 433 333333444556677889999999998542 3345567766655543 347899999999999
Q ss_pred hcCCCCc--hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 503 ENDPRKG--AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 503 ~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+.-|+.. ++|...+..-.+.|.-..|.++++++..
T Consensus 578 ~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 578 DGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9876433 4555556666678999999999998654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-10 Score=98.33 Aligned_cols=199 Identities=16% Similarity=0.087 Sum_probs=107.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~------- 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV------- 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH-------
Confidence 4556667777777777777777777766542 2223344444555555555555555555554443 122233
Q ss_pred HHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHH
Q 045069 351 YSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
+..+...+...|++++|.+.+++..+....| ....+..+...+...|++++|...
T Consensus 102 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 102 ------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444455555555555555555422111 223444455555666666666666
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+++..+. .+.+...+..+...+...|++++|.+.+++.. .+.++..+..+...+...|+.+.|..+.+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6665552 23334455566666666666666666665542 1334444555555566666666666666655444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.5e-08 Score=92.49 Aligned_cols=265 Identities=14% Similarity=0.144 Sum_probs=180.3
Q ss_pred HHHHHhcCChhhHHHHHhhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch
Q 045069 247 VSMYARCNCMNSAYHVFNSLFHPDLV--TWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324 (554)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 324 (554)
+.+......|.+|+.+++.+...++. -|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44455667888888888888554443 46777888999999999999986532 34556778889999998
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN 404 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 404 (554)
|.++-.+. .|.+..+..|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++.++- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----C
Confidence 88876554 34456667777777778889999999999988888875 467888999999888887663 3
Q ss_pred CCH--HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCChhhH
Q 045069 405 PDE--STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVS 478 (554)
Q Consensus 405 p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 478 (554)
|+. .|...+..-+...|+...|..-|-+..+ |.+-+..|...+.|++|.++-+.-.. +.-...|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 332 3666777788889999999887766643 45666777778888888877665321 0000111
Q ss_pred H------HHHHHH-------------HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 479 G------ALLSCC-------------HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 479 ~------~l~~~~-------------~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
. ..+..+ +..+-++-|..+.+-..+ ...+.+...++..+...|++++|-+.+-+.++.+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 0 111112 233344444444433333 3345666777778889999999988888777665
Q ss_pred CccCC
Q 045069 540 LRKEA 544 (554)
Q Consensus 540 ~~~~~ 544 (554)
.-+-.
T Consensus 1026 tynit 1030 (1636)
T KOG3616|consen 1026 TYNIT 1030 (1636)
T ss_pred cccch
Confidence 54433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-10 Score=91.11 Aligned_cols=163 Identities=16% Similarity=0.044 Sum_probs=131.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+...|..+|.+.|++..|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+-|++..+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 344566778888888888888888888 456554 788888888888888888888888876 244457778888888
Q ss_pred HHhcCChHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 453 LGLAGNLEEAYSFIWSLPKP----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
+|..|++++|...|++.... ....+|..+..+..+.|+.+.|...+++.++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888899998888886542 34567788888888889999999999999999998888888888888889999999
Q ss_pred HHHHHHHhhcCC
Q 045069 529 MKLRDDIVDNGL 540 (554)
Q Consensus 529 ~~~~~~~~~~~~ 540 (554)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888888766554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-09 Score=99.83 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcC----------CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLF----------HPDLVT-WSALITGYSQQGDYGKALYYFRKLNMQ-----G-KKA 304 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~-~~~ 304 (554)
+...|...|...|+++.|+.+++... .+...+ .+.+...|...+++++|..+|+++..- | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 33445556666666666666555441 122222 233556777788888888888877542 2 112
Q ss_pred C-HHHHHHHHHHHhccCCcchhHHHHHHHHHh-----c-CCch-HHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHH
Q 045069 305 D-PVLIASVLAAAAKSANVWPGAVIHGYVIQH-----G-FELS-VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYN 376 (554)
Q Consensus 305 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 376 (554)
. ..++..|..+|.+.|++++|...++...+- + ..|. ...++.+...++..+++++|..+++..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a--------- 351 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA--------- 351 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---------
Confidence 2 235666666788888888888777765431 1 1111 122344445555555555555554421
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHh----C-CCC-ChhHHHHH
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEY----G-IQA-KTEHYIYM 449 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l 449 (554)
.+++...... ..|. ..+++.|...|.+.|++++|.++++++.... + ..+ ....++.+
T Consensus 352 ---------------l~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 352 ---------------LKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ---------------HHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 1111111000 1111 1256667777777777777777777665531 1 111 13445666
Q ss_pred HHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 450 VKLLGLAGNLEEAYSFIWSLP---------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...|.+.++..+|.++|.+.. .+....+|..|+..|...|+++.|+++.+.+...
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 667777777777777666532 1233456677777788888888888877776643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-10 Score=111.70 Aligned_cols=211 Identities=10% Similarity=0.055 Sum_probs=163.9
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHHHHHHH---------ccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCC
Q 045069 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYS---------KCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGF 387 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 387 (554)
++.+.|...+++..+.. +.+...|..+..+|. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34578888899888765 234455655555443 23457899999998774 3 45677888888899999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
+++|...+++..+ ..|+ ...+..+...+...|++++|...+++..+ +.|+ ...+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5566 44788888899999999999999999977 3454 33334445557778999999999
Q ss_pred HHhCCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 466 IWSLPK--PV-DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 466 ~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+++... +| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 988642 33 45567778888899999999999999998888888888888988888888 4888888887653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-10 Score=97.91 Aligned_cols=225 Identities=9% Similarity=-0.036 Sum_probs=156.1
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchH-HHHHHHHHcCCC
Q 045069 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITY-NSVILGLGLHGF 387 (554)
Q Consensus 311 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~ 387 (554)
.+-.+|.+.|-+.+|++.++...+. .|-+.||-.|-++|.+..+++.|+.+|.+..+ |-.+|| ..+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3455566666666666666555544 34455666666777777777777777776553 444444 335556666677
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
.++|.++|+...+.. ..+......+...|.-.++++-|+++++++.+ .|+ .++..|+.+.-+|.-.++++-++.-|.
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777777631 22334555566666677777777777777777 354 345667777777777777777777666
Q ss_pred hCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 468 SLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 468 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+... ..-...|..+......-||+..|.+.|+-++..+|++...+..|+-.-.+.|++++|..+++......+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 6431 223567778888888889999999999999999999999999998888899999999999998876544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=97.61 Aligned_cols=236 Identities=11% Similarity=0.042 Sum_probs=191.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc
Q 045069 275 SALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC 354 (554)
Q Consensus 275 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (554)
+.+.++|.+.|-+.+|...++..... .|-+.||..+-.+|.+..++..|+.++.+-.+.- +-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788888888888888888877665 5666788888888888888888888888877652 44555555677888888
Q ss_pred CChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 045069 355 GYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 355 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++.++|.++|+...+ .++.....+..+|.-.++++.|+.+|+++.+.|+. ++.-|..+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998775 45566667777888899999999999999999865 66778888888999999999999999
Q ss_pred HhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 432 RMTEEYGIQAK--TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 432 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+.... --.|+ ..+|..+.......|++.-|.+-|+-.. .+.....++.|...-.+.|++++|..+++.+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88774 44454 5678888888899999999999998764 3556778899988889999999999999999999887
Q ss_pred CchhHHHH
Q 045069 508 KGAYKVML 515 (554)
Q Consensus 508 ~~~~~~~l 515 (554)
-.+....+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 66554444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-08 Score=91.21 Aligned_cols=236 Identities=11% Similarity=0.041 Sum_probs=185.0
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHH
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVI 379 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 379 (554)
.-+.........-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+ | ...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3445555566667778899999999999988876 56666666667778888876665555555553 3 457899999
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN 458 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (554)
.-|...|++.+|.++|.+... +.|.- ..|..+...+.-.|.-++|...+....+- ++-...-+-.+.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhcc
Confidence 999999999999999999876 55654 47999999999999999999999888762 34444444556667889999
Q ss_pred hHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----C---CCCchhHHHHHHHHHccCChhHHH
Q 045069 459 LEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN----D---PRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 459 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
.+-|.++|.+.. .|.|+...+-+.......+.+.+|..+|+..++. . +.....+..|+.+|.+.+++++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999998864 4778888899988888999999999999998854 2 223456889999999999999999
Q ss_pred HHHHHHhhcCCccC
Q 045069 530 KLRDDIVDNGLRKE 543 (554)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (554)
..+++.+....+..
T Consensus 476 ~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 476 DYYQKALLLSPKDA 489 (611)
T ss_pred HHHHHHHHcCCCch
Confidence 99999988765443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-08 Score=98.94 Aligned_cols=255 Identities=13% Similarity=0.047 Sum_probs=155.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc-----C
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC-----G 355 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g 355 (554)
+...|++++|++.+.+-... +......+......+.+.|+.++|..++..+++.+ +.+..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34445555555554432211 11222233333444445555555555555555444 23333333333333111 1
Q ss_pred ChHHHHHHHhccCC--CCcchHHHHHHHHHcCCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 356 YLGLGIQVFETMSE--RNIITYNSVILGLGLHGFT-YQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTR 432 (554)
Q Consensus 356 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 432 (554)
..+...++|+++.. |.......+.-.+.....+ ..+..++..+..+|+++ +|..+-..|......+-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHH
Confidence 34444555554442 2222222222222221122 34556677777887654 344444445555555555566665
Q ss_pred hHHHh-------------CCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHhcCChHHHH
Q 045069 433 MTEEY-------------GIQAKT--EHYIYMVKLLGLAGNLEEAYSFIWSLP-K-PVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 433 ~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
..... .-+|+. .++..+.+.|...|++++|++++++.. . |..+..|..-+..+-..|++++|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 54421 123443 355677888999999999999999864 3 445788888899999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 496 IVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.++.+.++++.|..+..-.+..+.+.|+.++|.+++..+.+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999988776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-08 Score=93.65 Aligned_cols=216 Identities=14% Similarity=0.067 Sum_probs=147.8
Q ss_pred CCcchhHHHHHHHHHhc-CCc--hHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHH
Q 045069 320 ANVWPGAVIHGYVIQHG-FEL--SVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
+..+.+...+.++.... ..| ....|..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555666665432 122 245677778888899999999998887764 3 45688888889999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 394 FFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 394 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
.|++..+ +.|+ ..++..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+.+....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999988 5665 457777888888899999999999998763 444332222233345567899999998664322
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLF-------ENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.++..|. ........|+...+ +.++.+. +..|..+..|..++.++.+.|++++|+..|++.++.++..
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2222332 22333345555443 2444443 3356667889999999999999999999999998876543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-07 Score=78.50 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=136.7
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCC-------ChHHHHH
Q 045069 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHG-------FTYQAFE 393 (554)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 393 (554)
+-+.|++++--+.+. .| ..--.|+-.|.+.++..+|..+.+.+...++.-|-.-.-.++..| ...-|.+
T Consensus 269 ngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345555555444432 12 222345566889999999999988876544433332222233333 3455666
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 394 FFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
.|+..-+.+..-|.. --.++..++.-...+++.+..++.+.. +-...|... -.+.++++..|.+.+|.++|-++..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 666555554443332 233444555556678888888888877 334444443 45789999999999999999887632
Q ss_pred --CChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcC-CC-CchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 473 --VDPAVS-GALLSCCHIYGNSDLAEIVAHQLFEND-PR-KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 473 --~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.+..+| ..|.++|...+..+.|-.++ ++.+ |. .......++.-+.+.|.+--|.+.|+.+...++.|+-
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 344444 55677888899988776554 4443 43 3345566778889999999999999999877765543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-07 Score=86.86 Aligned_cols=412 Identities=13% Similarity=0.063 Sum_probs=243.9
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchH--HHHHHHHHhCCChhh
Q 045069 111 TRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLC--NSMISGFAHCGFWDK 188 (554)
Q Consensus 111 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~ 188 (554)
++.+...|++++|.+....++..+ +-+...+..=+-+.+..+++++|+.+.+.-........ -.=..+..+.+..|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 445667889999999999999877 33555666666678899999999977665443111111 122344557899999
Q ss_pred HHHHHHHHHHCCCCCChh-hHHHHHHHcccCCccchhhHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChhhHHHHHhhc
Q 045069 189 SLQLFDWMLRLGKTPDEY-TLVGLISGLWEPSLLSVGQGIHGFCLKSSFDS-YDYVSSVLVSMYARCNCMNSAYHVFNSL 266 (554)
Q Consensus 189 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (554)
|+..++ |..++.. +...-...|.+.+++++|..+|+.+.+++.+. +...-..++.+-. .-.+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhc
Confidence 999988 3344433 55555567789999999999999998887543 2222222222111 11111 34444
Q ss_pred CCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHhCC-------CCC------CHH-HHHHHHHHHhccCCcchhHHHH
Q 045069 267 FHPDLVTWSA---LITGYSQQGDYGKALYYFRKLNMQG-------KKA------DPV-LIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 267 ~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~~-------~~~------~~~-~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
+.....+|.. ....+...|++.+|+++++...+.+ -.- ... .-..+.-++...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3333334443 3456778999999999999883211 111 111 1223445667789999999999
Q ss_pred HHHHHhcCCchH---HHHHHHHHHHHccCChH-HHHHHHhccCC--------------C-CcchHHHHHHHHHcCCChHH
Q 045069 330 GYVIQHGFELSV---MVSSALVDMYSKCGYLG-LGIQVFETMSE--------------R-NIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 330 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~ 390 (554)
...++......+ ...|.|+.+-....-++ .++..++.... . .+..-+.++..|.. .-+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHH
Confidence 999888743221 22233332221111111 22223332221 1 11111223333322 2233
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhc--CCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCH--GGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
+.++..... +..|.. .+..++..+.+ ...+..+..++....+ +.+-. ..+.-.+++.....|+++.|++++.
T Consensus 326 ~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 326 VRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333322221 123332 34444444332 2357778888888766 33333 4566677888889999999999998
Q ss_pred --------hCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHccCChhHHHHH
Q 045069 468 --------SLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN----DPRK---GAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 468 --------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
.+.. ...+.+...+...+.+.++.+.|..++..++.- .+.. ...+..++..-.+.|+-++|..+
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 3332 455666677777788888888888888877664 2222 23444556666788999999999
Q ss_pred HHHHhhcCC
Q 045069 532 RDDIVDNGL 540 (554)
Q Consensus 532 ~~~~~~~~~ 540 (554)
++++.+.+.
T Consensus 481 leel~k~n~ 489 (652)
T KOG2376|consen 481 LEELVKFNP 489 (652)
T ss_pred HHHHHHhCC
Confidence 999988543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-06 Score=82.10 Aligned_cols=171 Identities=11% Similarity=0.021 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcC
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ---RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ 99 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 99 (554)
..+.+.+.+ +.+-.+.+.....-.+...|+-++|......... .+.+.|..+.-.+-...++++|+..|......+
T Consensus 27 LK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 27 LKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred HHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 333444443 3333444555555566677888888887776553 355778887777777888999999999888753
Q ss_pred CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----CCcchHH
Q 045069 100 LKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-----PDLVLCN 174 (554)
Q Consensus 100 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 174 (554)
+-|...+.-+.-.-++.|+++........+.+..+ .....|..+..++.-.|+...|..+++...+ |+...|.
T Consensus 106 -~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 106 -KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 22455666666666677787777777766666532 2445666777777777888887777765543 3333332
Q ss_pred HHH------HHHHhCCChhhHHHHHHHH
Q 045069 175 SMI------SGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 175 ~li------~~~~~~~~~~~a~~~~~~m 196 (554)
... ....+.|..+.|++.+..-
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 221 3345566666666666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-07 Score=81.70 Aligned_cols=392 Identities=13% Similarity=0.024 Sum_probs=254.3
Q ss_pred CHhHHHHHHHHHHcCCCHhHHHHhhcccCCC-CcchHHHHHHHHHhCCC--hhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045069 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSDP-DLVLCNSMISGFAHCGF--WDKSLQLFDWMLRLGKTPDEYTLVGLISG 214 (554)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 214 (554)
+...-...+.+|...++-+.|...+.+.++. ...--|.|+.-+.+.|- .+.++..-+-+++. +.-... |.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~----i~~ 169 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQV----IEA 169 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHH----HHH
Confidence 4555667788888899999999999888873 33334444444444432 22222221112221 000000 101
Q ss_pred cccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhc--CChhhHHHHHhhc-----CCCChhhHHHHHHHHHhcCCH
Q 045069 215 LWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC--NCMNSAYHVFNSL-----FHPDLVTWSALITGYSQQGDY 287 (554)
Q Consensus 215 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 287 (554)
..+.+ +..+..--..|.....+|........+.+++.+ ++-..|...+-.+ .+.|+.....+.+.+...|+.
T Consensus 170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 10000 000111111222333444444455555555443 3333333333222 456888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhc
Q 045069 288 GKALYYFRKLNMQGKKADPVL-IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366 (554)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (554)
++|+..|++.... .|+..+ .....-.+...|+.+....+...+.... ..+...|-.-........+++.|+.+-++
T Consensus 249 ~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999987644 343332 1112223457788888888887776543 22333333334445566789999998887
Q ss_pred cCCC---CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 367 MSER---NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 367 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
..+. ++..|-.-...+...|+.++|.-.|+.... +.| +...|..|+.+|...|++.+|...-....+. ++.+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~s 401 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNS 401 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcc
Confidence 7753 444454445678889999999999999887 665 4569999999999999999999888877763 5566
Q ss_pred hhHHHHHH-HHHH-hcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 443 TEHYIYMV-KLLG-LAGNLEEAYSFIWSLP-K-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 443 ~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
..+...+. ..+. ....-++|.+++++.. . |.-......+...|...|..+.++.++++.+...|+ ......|+++
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~ 480 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDI 480 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHH
Confidence 66666663 3333 2334578999998854 3 444566777778899999999999999999998875 5788899999
Q ss_pred HHccCChhHHHHHHHHHhhcCCccCC
Q 045069 519 YAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 519 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
+...+.+++|.+.|..+++.++....
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999988776543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-08 Score=80.87 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLC 415 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~ 415 (554)
+..++..+...|.+.|..+.|.+.|+...+ .+....|....-+|..|++++|...|++.......|.. .||..+..
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 344455555555555666666555555442 23344555555566666666666666666654333332 25555655
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
+..+.|+.+.|...|++..+. .+........+.+...+.|++..|..+++.... .+....+...+..-...||.+.
T Consensus 148 Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 556666666666666666552 222344555566666666666666666655432 3455555555555566666666
Q ss_pred HHHHHHHHHhcCCCCchh
Q 045069 494 AEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~ 511 (554)
+-++=.++.+..|.+...
T Consensus 226 a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 226 AQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 666666666666665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-06 Score=81.90 Aligned_cols=30 Identities=3% Similarity=0.049 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.++..|++.+....+|+.|-+.++++.++-
T Consensus 1331 ~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1331 RLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 578889999999999999999999998764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.3e-07 Score=86.46 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=119.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
..+...|+++.|...|-+... ....+.+......+.+|..+++.+.++.. ...-|..+.+-|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 344455566666555543321 12334455566667777777776665532 2334556666677777777
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 359 LGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 359 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
.|.++|-+.. .++-.|..|.+.|+++.|.++-.+... .......|..-..-+-+.|++.+|.++|-.+..
T Consensus 783 ~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~--- 852 (1636)
T KOG3616|consen 783 IAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--- 852 (1636)
T ss_pred HHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---
Confidence 7777776532 345556667777777777766555422 222333454444555666777777666644421
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
|+ .-+..|-+.|..+..+++..+-....-..+...+..-+-..|+.+.|+..|-++-+ +..-.+.
T Consensus 853 --p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnm 917 (1636)
T KOG3616|consen 853 --PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNM 917 (1636)
T ss_pred --ch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHH
Confidence 32 23456666666666666666544333344555555556666666666655544321 2222344
Q ss_pred HHccCChhHHHHHHH
Q 045069 519 YAEDGRWDDVMKLRD 533 (554)
Q Consensus 519 ~~~~g~~~~A~~~~~ 533 (554)
|...+.|++|.++-+
T Consensus 918 yk~s~lw~dayriak 932 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhhHHHHHHHHh
Confidence 555555555554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=90.90 Aligned_cols=225 Identities=13% Similarity=0.115 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCC-chHHHHHHHHHHHHcc
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE-LSVMVSSALVDMYSKC 354 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 354 (554)
.+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-+++....... .+.........++...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3455566666655433 2232222 444444444444333323333333333332222222 2333333344567778
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcCCchHHHHHHH
Q 045069 355 GYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC----CHGGLVNDGREIF 430 (554)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~ 430 (554)
|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++ ...+.+.+|..+|
T Consensus 116 ~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 116 GDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHH
Confidence 9999999888865 4566667788889999999999999999987 445543 33333333 2345789999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS-DLAEIVAHQLFENDPR 507 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~ 507 (554)
+++.+ ..++++.+.+.++.+....|++++|.+++.+.. .+.++.++..++.+....|+. +.+.+.+.++....|+
T Consensus 191 ~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 191 EELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 99877 467888888999999999999999999988853 366778888888887888877 6788889998888888
Q ss_pred Cchh
Q 045069 508 KGAY 511 (554)
Q Consensus 508 ~~~~ 511 (554)
.+..
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 6653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-07 Score=87.16 Aligned_cols=447 Identities=12% Similarity=0.009 Sum_probs=244.4
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCC
Q 045069 25 LHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ---RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLK 101 (554)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 101 (554)
....+....+..++..|..|.-++...|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333444445567888999998899999999999999988653 24466888888888888888899888876554323
Q ss_pred CCcc-cHHHHHHHhh-cCCChhhHHHHHHHHHHhc----CCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHH
Q 045069 102 PDNF-TYACITRACS-ENSDLPGLRFVHGGAIVSG----LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNS 175 (554)
Q Consensus 102 p~~~-~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 175 (554)
|+.. .+...-..|. +.+..+++..+.....+.. -...+..|..+.-+|...-. +++..+-
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~se-- 455 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKSE-- 455 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChHH--
Confidence 4333 3333333444 4456666666655555421 11223333333333321100 0000000
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCC-CCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 045069 176 MISGFAHCGFWDKSLQLFDWMLRLGK-TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254 (554)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 254 (554)
+.....++++.+++..+.+. .|+...| +---++..++.+.|....++..+.+...+...|..|.-.+.-.+
T Consensus 456 ------R~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 456 ------RDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred ------HHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 00012234444444443321 1222222 12223444555555555555555544555555555555555556
Q ss_pred ChhhHHHHHhhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCcchhHHHH
Q 045069 255 CMNSAYHVFNSLFHPDLVTW---SALITGYSQQGDYGKALYYFRKLNMQ--GKKADPVLIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
++.+|+.+.+...+.....| ..-+..-..-++.++++.....+..- ...+-..+ ++-....+..
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk 596 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLK 596 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhh
Confidence 66666655554422111111 11122222344555555444443321 00000000 0000011111
Q ss_pred HHH---HHhcCCchHHHHHHHHHHHH---ccCChHHHHHHHhccCCCCc------chHHHHHHHHHcCCChHHHHHHHHH
Q 045069 330 GYV---IQHGFELSVMVSSALVDMYS---KCGYLGLGIQVFETMSERNI------ITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 330 ~~~---~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
..+ .. .....+.++..+..... +.-..+..+..+.....|+. ..|......+.+.+..++|...+.+
T Consensus 597 ~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 597 AGLHLALS-QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccccCcc-cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 110 00 01111222222221111 11111122122222222332 2455666778888999999988888
Q ss_pred HHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhCC--C
Q 045069 398 IIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYS--FIWSLP--K 471 (554)
Q Consensus 398 m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~ 471 (554)
... +.|-. ..|......+...|...+|.+.|..... +.|+ +....++..++.+.|+..-|.. ++..+. .
T Consensus 676 a~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 676 ASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 877 44544 4677777788889999999999988855 5565 7788999999999998777776 777764 4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+.++..|..++..+.+.|+.+.|-+.|..+.+..+.+|.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 778999999999999999999999999999999766553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-07 Score=80.85 Aligned_cols=295 Identities=12% Similarity=0.025 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHh
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALIT---GYSQQGDYGKALYYFRKLNMQGKKADPVLIA-SVLAAAA 317 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~ 317 (554)
-.-.+...+.-.|++..|+..|...++-|+..|.++.+ .|...|+..-|+.-+.+..+. +||-..-. .--..+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 33445566667778888888888887777766666543 577777777777777766654 56643221 1223556
Q ss_pred ccCCcchhHHHHHHHHHhcCC------------chHHH--HHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHH
Q 045069 318 KSANVWPGAVIHGYVIQHGFE------------LSVMV--SSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVIL 380 (554)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~------------~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 380 (554)
+.|.++.|..-|+..++.... +.... ....+..+...|+...|+.....+.+ -|...|..-..
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 778888888888877765421 11111 12234455667888888888877764 46667777788
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhH----HHH---HH---
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEH----YIY---MV--- 450 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~---l~--- 450 (554)
+|...|++..|+.=++...+.. ..+..++.-+-..+...|+.+.++...++..+ +.||... |.. +.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHH
Confidence 8888999888888777766632 22344555566677788888888777777744 6676432 211 11
Q ss_pred ---HHHHhcCChHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 451 ---KLLGLAGNLEEAYSFIWSL-PKPVD-----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 451 ---~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
....+.++|.++++-.+.. ...|. ...+..+..++...+++.+|++...++++.+|++..++..-+.+|.-
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1234567777777766653 33333 23455666777888999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHhhcCCcc
Q 045069 522 DGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~~~~~~~ 542 (554)
...|++|+.-|+++.+.+...
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 999999999999988765443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.3e-09 Score=96.04 Aligned_cols=218 Identities=13% Similarity=0.083 Sum_probs=173.8
Q ss_pred HhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC---CcchHHHHHHHHHcCCChHHHH
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER---NIITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 392 (554)
+.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+.+..+. |....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356778888888888888776 667888888888888888888899888887753 4456666777888889889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 393 EFFRDIIEKGLNPDESTFSALL-----------CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
+.+++-+... |.. ..+. ..+..........++|-++....+..+|+.+...|.-.|.-.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999887632 211 1111 11222233445566666665544666888999999999999999999
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 462 AYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 462 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
|+.-|+.+. .|.|...|+.|...++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.|+||.+.|-+++...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999999864 477899999999999999999999999999999999999999999999999999999999999887543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-07 Score=83.78 Aligned_cols=445 Identities=13% Similarity=0.017 Sum_probs=232.6
Q ss_pred HHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCC-cccHHHHHHHhhcCCChh
Q 045069 46 RLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD-NFTYACITRACSENSDLP 121 (554)
Q Consensus 46 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~ 121 (554)
.+.+..|+++.|+..|.+.. ++|-..|+.-..+|+..|++++|++=-.+-.+ +.|+ ...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 34566788888888887644 55677788888888888888888776666555 3454 346777788888888888
Q ss_pred hHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHH-HhhcccCCCCcchHHHHH-----HHHHhCCChhhHHHHHHH
Q 045069 122 GLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAI-KVFDGVSDPDLVLCNSMI-----SGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~ 195 (554)
+|..-|.+-++... .+...++-+..++ ..+.+. +.| .++..|..+. +.+.....+...++.+..
T Consensus 88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~----~~~~~~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKDP-SNKQLKTGLAQAY----LEDYAADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcCC-chHHHHHhHHHhh----hHHHHhhhhc-----cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 88888877776542 2455556666655 111111 111 1111111111 111111111111111100
Q ss_pred HHHCCCCCChh-h---HHHHHHHcccCCccchhhHHHHHHHHhc-------CCCchhHHHHHHHHHHhcCC-hhhHHHHH
Q 045069 196 MLRLGKTPDEY-T---LVGLISGLWEPSLLSVGQGIHGFCLKSS-------FDSYDYVSSVLVSMYARCNC-MNSAYHVF 263 (554)
Q Consensus 196 m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 263 (554)
.|+.. . ...++.+.......+.- .....+ ..|...- .......++ .++..
T Consensus 158 ------~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~----~~~~~~~~d~~ee~~--- 219 (539)
T KOG0548|consen 158 ------NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQE----HNGFPIIEDNTEERR--- 219 (539)
T ss_pred ------CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCccccc----CCCCCccchhHHHHH---
Confidence 01000 0 00000000000000000 000000 0000000 000000000 00000
Q ss_pred hhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCch---
Q 045069 264 NSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELS--- 340 (554)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 340 (554)
...-..-...+..+..+..++..|.+-+....+.. -+..-++....++...|.+...........+.|...-
T Consensus 220 ---~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 220 ---VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred ---HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 00011123345555556666777777766665543 3333344444566666666555555555444442110
Q ss_pred ---HHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 045069 341 ---VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCA 416 (554)
Q Consensus 341 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~ 416 (554)
...+..+..+|.+.++.+.|+..|.+...+... -....+....+++....+...- +.|... -...-...
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNE 367 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHH
Confidence 111222344666677788888888764421111 1122233444555555444443 444432 12223566
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+.+.|++..|...|.+++++ -|.|...|....-+|.+.|.+.+|++=.+... .++....|..-+.++....+++.|
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999998884 46678888888888999999988888766643 245556666666667777889999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
.+.|++.++.+|.+..+...+.+++..........++.++
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999999999888888887777654333333444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-05 Score=76.91 Aligned_cols=472 Identities=12% Similarity=0.069 Sum_probs=278.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHH----HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHH
Q 045069 39 FYATKLVRLYALNNVLPSARILFDKTPQ--RSVFLWNS----IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITR 112 (554)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~----ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 112 (554)
+-+..+.+.+-+.|-...|++.+..+.. +.+..-+. -+-.|.-.-.++.+.+.++.|...+++.|..+.-.+..
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3367778888999999999988877651 11111110 12234445568899999999999988888888777777
Q ss_pred HhhcCCChhhHHHHHHHHHHh-----------cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--------------
Q 045069 113 ACSENSDLPGLRFVHGGAIVS-----------GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-------------- 167 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------- 167 (554)
-|...=-.+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 776665566666666665432 3455777777889999999999998887754320
Q ss_pred -----------------CCcchH--H----HHHHHHHh------------------------------------------
Q 045069 168 -----------------PDLVLC--N----SMISGFAH------------------------------------------ 182 (554)
Q Consensus 168 -----------------~~~~~~--~----~li~~~~~------------------------------------------ 182 (554)
+|.+.| . -.|..|.+
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 111111 0 01222221
Q ss_pred ----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccch----------hhHHHHHHHHhcC------------
Q 045069 183 ----CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSV----------GQGIHGFCLKSSF------------ 236 (554)
Q Consensus 183 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~~~------------ 236 (554)
.++..--+-+++.....| ..|..|++.+...|...++-.+ ..-+-..+.++.+
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 122222223334444445 3477788888777765443211 1112222222211
Q ss_pred -------CCchhHHHHHHHHHHhcCChhhHHHHHhhc-----------------CCCChhhHHHHHHHHHhcCCHHHHHH
Q 045069 237 -------DSYDYVSSVLVSMYARCNCMNSAYHVFNSL-----------------FHPDLVTWSALITGYSQQGDYGKALY 292 (554)
Q Consensus 237 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~~~~~~~l~~~~~~~g~~~~a~~ 292 (554)
......|..+.+.+.+..+.+--.+++.+- ...|+..-+.-++++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 112234445555555556655555544221 11455666667788888888888888
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC------CchHHHHHHHHHHHH------------
Q 045069 293 YFRKLNMQGKK--ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF------ELSVMVSSALVDMYS------------ 352 (554)
Q Consensus 293 ~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~------------ 352 (554)
+++++.-..-. -+...-+.++-...+ .+..++.++.+++-..+. ..+...|......|-
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 88887643211 111122222222222 122233333333222110 001111111111111
Q ss_pred --ccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 045069 353 --KCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 353 --~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
..+..+.|.++-++.. ....|..+..+-.+.|...+|++-|-+. .|+..|.-+++.+.+.|.+++..+++
T Consensus 1085 ie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1233444444433333 3356888888888888888888766432 35678999999999999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
...+++ .-.|... ..|+-+|++.++..+..+++. .|+.........-|...+.++.|.-+|.. .+
T Consensus 1157 ~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vS 1221 (1666)
T KOG0985|consen 1157 LMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VS 1221 (1666)
T ss_pred HHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hh
Confidence 888776 6666655 568889999999988777663 46666777788888888888888877764 45
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHH
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
-+..|+..+...|+++.|...-+++
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5667777777777777776655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-07 Score=79.98 Aligned_cols=318 Identities=10% Similarity=0.001 Sum_probs=208.4
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHH-HHH
Q 045069 37 DPFYATKLVRLYALNNVLPSARILFDKTPQ--R-SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYAC-ITR 112 (554)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~ 112 (554)
...-+.+.+..+.+..++++|++++..-.+ | +....+.+...|-...++..|.+.++++... .|...-|.. -..
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 334466777778888899999998875442 2 5566777788888999999999999998874 455555543 234
Q ss_pred HhhcCCChhhHHHHHHHHHHhcCCCCHh--HHHHHHHHHHcCCCHhHHHHhhcccCC-CCcchHHHHHHHHHhCCChhhH
Q 045069 113 ACSENSDLPGLRFVHGGAIVSGLGRDSI--TSSALVTAYSKLSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHCGFWDKS 189 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a 189 (554)
.+-+.+.+..|.++...|... |+.. +...-....-..+++..+..++++.+. .+..+.+.......+.|+++.|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 455778888999988877542 2211 111111223457888899999998884 6666666666667789999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHH----HHHHHHHHhcCChhhHHHHHhh
Q 045069 190 LQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS----SVLVSMYARCNCMNSAYHVFNS 265 (554)
Q Consensus 190 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~ 265 (554)
.+-|+...+-+--.....|+..+ +..+.++.+.|.+...+++++|+...+..- ...+++-.-.+-...+..
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S---- 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS---- 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH----
Confidence 99999887754444456676665 445778899999999999988865433210 000000000000000000
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHH
Q 045069 266 LFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ-GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVS 344 (554)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 344 (554)
.-+..+|.-...+.+.|+++.|.+.+-.|..+ ....|++|...+.-.- ..+++....+-+.-+.+.+ +....|+
T Consensus 239 ---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 239 ---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred ---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHH
Confidence 01233455555677889999999988888543 2456777766543322 2455666666677777665 3556788
Q ss_pred HHHHHHHHccCChHHHHHHHhccCC
Q 045069 345 SALVDMYSKCGYLGLGIQVFETMSE 369 (554)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (554)
..++-.||+..-++.|-.++.+-..
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 8888899999999999988876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-06 Score=82.15 Aligned_cols=259 Identities=12% Similarity=-0.013 Sum_probs=154.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
...+...|++++|...+++..+.. +.+...+.. ...+.. .+....+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 334567788888888888877653 222223332 222222 3334444444333 111112223444556677888
Q ss_pred cCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhcCCchHHHH
Q 045069 354 CGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPDE--STFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~ 427 (554)
.|++++|...+++..+ .+...+..+...+...|++++|...+++..+... .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999999888763 3445677788888889999999999988877421 1232 24556777888899999999
Q ss_pred HHHHHhHHHhCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-Hh---C-CCCCChhhHHHHHHHHHhcCChHHHHHH
Q 045069 428 EIFTRMTEEYGIQAKTEHY-I--YMVKLLGLAGNLEEAYSF--I-WS---L-PKPVDPAVSGALLSCCHIYGNSDLAEIV 497 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~---~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 497 (554)
.++++........+..... + .++..+...|..+.+.++ + .. . ..............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875421111211111 1 223333334433322222 1 11 1 1111122223566667888999999999
Q ss_pred HHHHHhcC-C--------CCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 498 AHQLFEND-P--------RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 498 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++.+.... . .........+.++...|++++|.+.+...+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 98876642 1 123455566677889999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=90.84 Aligned_cols=246 Identities=9% Similarity=0.018 Sum_probs=166.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
+-+.-.|++..++.-.+ ........+.....-+.+++...|+.+. .+.++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34556788888886555 2222222233445566778888887654 334443333 677777766666555545666
Q ss_pred HHHHHHhccC-CCCc---chH-HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 359 LGIQVFETMS-ERNI---ITY-NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 359 ~A~~~~~~~~-~~~~---~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
.+..-+++.. ++.. .++ ......+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776665544 3211 222 22334566789999999988642 45667778889999999999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 434 TEEYGIQAKTEHYIYMVKLLG----LAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.+ ...|. +...++.++. -.+.+.+|..+|+++.. ++++.+++.+..++...|++++|+++++++.+.+|.
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 65 34443 3344444443 23479999999999854 567888888999999999999999999999999999
Q ss_pred CchhHHHHHHHHHccCCh-hHHHHHHHHHhhcC
Q 045069 508 KGAYKVMLSNTYAEDGRW-DDVMKLRDDIVDNG 539 (554)
Q Consensus 508 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 539 (554)
++.+...++-+....|+. +.+.+++.++....
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999999888888988 66788888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-06 Score=83.84 Aligned_cols=242 Identities=12% Similarity=0.025 Sum_probs=145.8
Q ss_pred CCChhHHHHHHH--HHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHc-C-------CCCCc
Q 045069 35 LRDPFYATKLVR--LYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT-Q-------LKPDN 104 (554)
Q Consensus 35 ~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-------~~p~~ 104 (554)
.-|+.+-.++++ .|.--|+.+.|.+..+.+.+ -..|..+.+.|.+.++.+-|.-.+-.|... | .+-+.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 346666666665 56677899999888777663 346999999999988888777776666432 1 11121
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-CCcchHHHHHHHHHhC
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHC 183 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 183 (554)
.+=..+.......|.+++|+.++++-.+. ..|-..|-..|+|++|.++-+.-.. .=..+|......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 33334444556789999999999887664 3455677788999999998765433 2233566666666677
Q ss_pred CChhhHHHHHHHHHH----------CC---------CCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHH
Q 045069 184 GFWDKSLQLFDWMLR----------LG---------KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSS 244 (554)
Q Consensus 184 ~~~~~a~~~~~~m~~----------~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (554)
++.+.|++.|++-.. .. -..|...|.-.-.-+-..|+.+.|..++....+ |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 889999888876311 10 011222222222222334444444444443322 22
Q ss_pred HHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045069 245 VLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLN 298 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 298 (554)
++++..|-.|+.++|-++-++ ..|......|.+.|-..|++.+|...|-+.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333444445555555555443 2344455566677777777777777776554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.1e-05 Score=81.10 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=138.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCcchhHHHHHHHHHh----cC-CchHHHHHHHHHHH
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADP----VLIASVLAAAAKSANVWPGAVIHGYVIQH----GF-ELSVMVSSALVDMY 351 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~ 351 (554)
+...|++++|...+++....-...+. .....+...+...|+++.|...+.+.... |. ......+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34455566665555554432111111 12233334445556666666555554421 11 11123344455556
Q ss_pred HccCChHHHHHHHhccCC-------CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 045069 352 SKCGYLGLGIQVFETMSE-------RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEK--GLNPD--ESTFSALLCA 416 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~ 416 (554)
...|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 666676666666554331 11 112333444555667777777777766542 11122 2234445556
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCCC--Chh----hHHHHHHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHY-----IYMVKLLGLAGNLEEAYSFIWSLPKPV--DPA----VSGALLSCC 485 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~l~~~~ 485 (554)
+...|+++.|.+.+.+.............+ ...+..+...|+.+.|.+++....... ... .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 667788888887777765421111111101 112233445778888888876654211 111 134556667
Q ss_pred HhcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 486 HIYGNSDLAEIVAHQLFEND------PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
...|+.++|...++++.... +.....+..++.++.+.|+.++|.+.+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77788888888888877651 1223456667778888888888888888887644
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-06 Score=83.93 Aligned_cols=176 Identities=16% Similarity=0.073 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHhcCCCCh-hHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhH
Q 045069 21 RTKELHALVAKASLLRDP-FYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLL 96 (554)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 96 (554)
....++..++...+.|+. ..|..|.+.|+...+...|.+.|+..- ..+..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 445666666666665554 578899999999888899999998765 4567788899999999999999998844433
Q ss_pred HcCC-CCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchH-H
Q 045069 97 RTQL-KPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLC-N 174 (554)
Q Consensus 97 ~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 174 (554)
+... ..-...|....-.+...++..++..-|+...+..+. |...|..+..+|.++|++..|+++|.+....++..+ .
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 3211 001112333334466778888888888888776643 788999999999999999999999988776443332 2
Q ss_pred H--HHHHHHhCCChhhHHHHHHHHH
Q 045069 175 S--MISGFAHCGFWDKSLQLFDWML 197 (554)
Q Consensus 175 ~--li~~~~~~~~~~~a~~~~~~m~ 197 (554)
. ....-+..|.+.+++..+....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 1223455688888888777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-05 Score=77.39 Aligned_cols=342 Identities=17% Similarity=0.123 Sum_probs=181.2
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
++.-.....+...+.| ..++.++|+|.+.|...++-.+ +++++ |..--+..+.-||...++--|.-.|++=.-
T Consensus 853 RLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 853 RLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred hHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 3333344555555666 4788999999999988775433 22222 222222334445554444333222211000
Q ss_pred c----CCCCCcccHHHHHHHhhcCCChhh-----------HHHHHHHHHHhcCC--CCHhHHHHHHHHHHcCCCHhHHHH
Q 045069 98 T----QLKPDNFTYACITRACSENSDLPG-----------LRFVHGGAIVSGLG--RDSITSSALVTAYSKLSLIDEAIK 160 (554)
Q Consensus 98 ~----~~~p~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 160 (554)
. ++--....|....+-+.+..|.+. -+++.++....+++ .|++..+..+.++...+-..+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 0 000011122222222222222221 13445555555432 355566666777888888888888
Q ss_pred hhcccCC-CCcc-----hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHh
Q 045069 161 VFDGVSD-PDLV-----LCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKS 234 (554)
Q Consensus 161 ~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 234 (554)
+++++.- +++. .-|.|+-...+. +..+..+..+++..-. .|+ +...+...+-+++|..+|+..
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf--- 1074 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF--- 1074 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh---
Confidence 8877643 3322 233344333333 3445555665553321 122 122333445555565555432
Q ss_pred cCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 045069 235 SFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLA 314 (554)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 314 (554)
..+....+.|+ -.-+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|+..|..++.
T Consensus 1075 --~~n~~A~~VLi---e~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1075 --DMNVSAIQVLI---ENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVID 1141 (1666)
T ss_pred --cccHHHHHHHH---HHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHH
Confidence 22223333333 2345667777666665554 46777777877888888777766542 35667778888
Q ss_pred HHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEF 394 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 394 (554)
.+.+.|.+++-..++....+..-+|.+. +.|+-+|++.++..+-++++. .||+.....+..-|...|.++.|.-+
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 8888888888777777776665555444 456777787777776665543 34544444555555555555555444
Q ss_pred H
Q 045069 395 F 395 (554)
Q Consensus 395 ~ 395 (554)
|
T Consensus 1217 y 1217 (1666)
T KOG0985|consen 1217 Y 1217 (1666)
T ss_pred H
Confidence 4
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.6e-07 Score=82.62 Aligned_cols=400 Identities=13% Similarity=0.038 Sum_probs=214.2
Q ss_pred HHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CC-cchHHHHHHHHHhCCChhh
Q 045069 112 RACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PD-LVLCNSMISGFAHCGFWDK 188 (554)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~ 188 (554)
++....|+++.|...|-+.+...+. |...|..-..+|+..|++++|++=-.+-.+ |+ ...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4566789999999999888877644 888888888999999999888865544433 43 3468888888888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH-----HHHhcCChhhHHHHH
Q 045069 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS-----MYARCNCMNSAYHVF 263 (554)
Q Consensus 189 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~ 263 (554)
|+.-|.+-.+.. +.+...+..+..+. ..+.+. ...-.++..+..+.. .+...-.+-.-+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~--------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA--------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh--------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 999998876642 22344555555554 111000 011111222221111 111111111111111
Q ss_pred hhcCCCChhh---HHHHHHHHHhcCCHH-HHHHHHHHHH-hCCCCC----------------------CHHHHHHHHHHH
Q 045069 264 NSLFHPDLVT---WSALITGYSQQGDYG-KALYYFRKLN-MQGKKA----------------------DPVLIASVLAAA 316 (554)
Q Consensus 264 ~~~~~~~~~~---~~~l~~~~~~~g~~~-~a~~~~~~m~-~~~~~~----------------------~~~~~~~l~~~~ 316 (554)
..-+. +... ...++.+.......+ .....-..+. ..+..| -..-...+..+.
T Consensus 156 ~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 11100 0000 001111110000000 0000000000 000011 001122344444
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCc---c-------hHHHHHHHHHcCC
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI---I-------TYNSVILGLGLHG 386 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~l~~~~~~~~ 386 (554)
.+..++..+.+-+....+.. -++.-++....+|...|.+..+...-+...+..- . .+..+..+|.+.+
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 44555555555555555443 3444445555556665555554444333221110 0 1122233445556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT-EHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
+++.++..|++.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++.+|++.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 6666666666655433332221 11222233333332221 233332 1112235566788999999999
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 466 IWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 466 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.++. .|.|...|..-..+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++.++.++
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 98864 4678888888888899999999999999999999999999888888888888999999999998887664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=80.69 Aligned_cols=120 Identities=8% Similarity=0.063 Sum_probs=84.3
Q ss_pred CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH-HhcCC--hHHH
Q 045069 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC-HIYGN--SDLA 494 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~~~--~~~A 494 (554)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++.. .+.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5555666666666655 245567777777777777777777777777653 255666666666653 55565 4778
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.++++++++.+|+++..+..++..+.+.|++++|+..++++++....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888887888888888888888887765543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-07 Score=83.34 Aligned_cols=182 Identities=12% Similarity=-0.034 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH----
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES---- 408 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---- 408 (554)
.....+..+...+...|++++|...|+++.+ |+. ..+..+..++...|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455666677777777888888888776653 322 24566677777788888888888887773 33221
Q ss_pred HHHHHHHHHhcC--------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH
Q 045069 409 TFSALLCACCHG--------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA 480 (554)
Q Consensus 409 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 480 (554)
++..+..++... |++++|.+.++.+.+. .+.+...+..+..... ..... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 344444455443 6677777777777663 2222222222211110 00000 011224
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+...+...|++++|+..++++++..|++ +..+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999997765 4788999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-06 Score=72.75 Aligned_cols=412 Identities=12% Similarity=0.077 Sum_probs=213.0
Q ss_pred CCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CCcchHHH-
Q 045069 99 QLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PDLVLCNS- 175 (554)
Q Consensus 99 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~- 175 (554)
|+....--+.+++..+.+..++..|.+++..-.++.. .+....+.|..+|-...++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 4444444567777777777788888877766655532 2555666777777778888888888877765 44444432
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHH--HcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 045069 176 MISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLIS--GLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC 253 (554)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (554)
-...+.+.+.+..|+++...|... |+...-..-+. .....+++..+..+.+..... .+..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecc
Confidence 235566777778888877776442 22111111111 112344555554444433211 1222222333334455
Q ss_pred CChhhHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch---hH
Q 045069 254 NCMNSAYHVFNSLFH----PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP---GA 326 (554)
Q Consensus 254 ~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~ 326 (554)
|+.+.|.+-|+...+ .....||.-+. ..+.|+++.|++...+++++|++-.+..- .|-..+ +.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElg---------IGm~tegiDvr 227 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELG---------IGMTTEGIDVR 227 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccC---------ccceeccCchh
Confidence 556666555555422 22334443333 23445556666666666555543222100 000000 00
Q ss_pred HHHH--HHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 327 VIHG--YVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RNIITYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 327 ~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
.+-+ .|-. ..-+..+|.-...+.+.|+++.|.+.+-.|+. .|++|...+.-.=. .+++.+..+-++-+.
T Consensus 228 svgNt~~lh~---Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 228 SVGNTLVLHQ---SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL 303 (459)
T ss_pred cccchHHHHH---HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH
Confidence 0000 0000 01123344444556788999999999999983 56666655433222 344555555555555
Q ss_pred HcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC-CChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCChh
Q 045069 400 EKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ-AKTEHYIYMVKLLG-LAGNLEEAYSFIWSLPKPVDPA 476 (554)
Q Consensus 400 ~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~ 476 (554)
+. .| ...||..++-.||+..-++.|-.++.+-... -.. .+...|+ +++++. ..-..++|.+-++.+.......
T Consensus 304 ~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 304 QQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred hc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 53 34 3458999999999999888888887654321 111 1233333 334433 3456777777666543211111
Q ss_pred hHHHHHHHH-HhcCCh----HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 477 VSGALLSCC-HIYGNS----DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 477 ~~~~l~~~~-~~~~~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.....+..- .+..+. ..|++-|++.++.. ..+...-++.|.+..++.-++++|..-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 111111111 122222 22333344444331 123344567788999999999999887653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-05 Score=75.21 Aligned_cols=192 Identities=12% Similarity=0.042 Sum_probs=106.3
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C---Cc--chHHHHHHHHH
Q 045069 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R---NI--ITYNSVILGLG 383 (554)
Q Consensus 311 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~l~~~~~ 383 (554)
.+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+ | +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44445566666666666666666654 33455666677777777777777777776553 1 11 13445667777
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhcCCchHHHHHH--HHHhHHHhCCCCC--hhHHHHHHHHHHh
Q 045069 384 LHGFTYQAFEFFRDIIEKGL-NPDESTF-S--ALLCACCHGGLVNDGREI--FTRMTEEYGIQAK--TEHYIYMVKLLGL 455 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~--~~~~~~l~~~~~~ 455 (554)
..|++++|..++++...... .+..... . .++..+...|..+.+.++ +...... ..+.. .........++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 88888888888887754222 1111111 1 223333444443333332 1111110 11111 1222245666677
Q ss_pred cCChHHHHHHHHhCCC---C---C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 456 AGNLEEAYSFIWSLPK---P---V-----DPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~---~---~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.|+.++|.+.++.+.. . . ..........++...|+.+.|.+.+.+++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888877542 1 0 1112222334456889999999998888765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-07 Score=74.70 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 470 (554)
.++++..+ +.|+. +..+...+...|++++|...|+.... --+.+...+..+..++.+.|++++|...|++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 33443 33455566667777777777777655 234456666666666667777777777766643
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
.+.++..+..+..++...|+.++|+..++++++..|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 2556666666666667777777777777777777777766666655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=75.90 Aligned_cols=110 Identities=9% Similarity=-0.086 Sum_probs=95.1
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
.++++..+ +.|+ .+..+...+...|++++|...|+... .+.+...+..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555544 3454 35567888899999999999999864 46788999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
|+++..+..++.++...|++++|++.+++.++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-06 Score=89.54 Aligned_cols=205 Identities=10% Similarity=0.069 Sum_probs=159.5
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHhccCC--------CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 045069 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--------RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST 409 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 409 (554)
+-+...|-..|.-....++.++|.++.++..+ .-...|.+++..-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 34456677777777888888888888887663 12346777777777777788888899998873 333446
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---ChhhHHHHHHHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPV---DPAVSGALLSCC 485 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 485 (554)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++. .-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888889999999999999999998755 667788889999999999889988888753 222 233444455556
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCe
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 546 (554)
.+.||.+.+..+|+..+...|.....|..+++.-.+.|+.+.++.+|++++..++.+...-
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 7889999999999999999999999999999999999999999999999998887765543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-05 Score=81.45 Aligned_cols=258 Identities=8% Similarity=-0.091 Sum_probs=149.1
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHcccCCccchhhHHHHHHHHhcCC-----CchhHHHHHHHH
Q 045069 179 GFAHCGFWDKSLQLFDWMLRLGKTPDE----YTLVGLISGLWEPSLLSVGQGIHGFCLKSSFD-----SYDYVSSVLVSM 249 (554)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~ 249 (554)
.+...|++++|...+++....-...+. .....+...+...|+++.|...+......... ........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566677776666665442111111 12333444455667777766666655432111 112233455566
Q ss_pred HHhcCChhhHHHHHhhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHH
Q 045069 250 YARCNCMNSAYHVFNSLFH-------P----DLVTWSALITGYSQQGDYGKALYYFRKLNMQG--KKAD--PVLIASVLA 314 (554)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~l~~ 314 (554)
+...|+++.|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6777888777777665411 1 11223444555667788888888887765421 1121 223444555
Q ss_pred HHhccCCcchhHHHHHHHHHhcC--Cc--hH-H-HHHHHHHHHHccCChHHHHHHHhccCCCCcc-------hHHHHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGF--EL--SV-M-VSSALVDMYSKCGYLGLGIQVFETMSERNII-------TYNSVILG 381 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~--~~--~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~ 381 (554)
.....|+.+.|...+........ .. .. . .....+..+...|+.+.|...+.....+... .+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 66778888888888777654211 11 00 0 0011224445578888888888766542211 13456667
Q ss_pred HHcCCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEK----GLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
+...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78889999999998887753 322222 35666777788999999999999988773
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-06 Score=86.45 Aligned_cols=127 Identities=12% Similarity=0.022 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
...+..|.......|.+++|..+++...+ +.|+ ......++..+.+.+++++|+..+++.. .+.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 33444444444444444444444444433 2222 3333444444444444554444444432 1333344444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++...|++++|..+|+++...+|+++..+..++.++...|+.++|...|++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444555555555555544444444445555444555555555555444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-08 Score=56.88 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=23.9
Q ss_pred cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccC
Q 045069 134 GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVS 166 (554)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 166 (554)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777663
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-05 Score=67.04 Aligned_cols=195 Identities=13% Similarity=0.032 Sum_probs=138.3
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 389 (554)
+..+...|+...|......+++.. +-+...|..-..+|...|++..|+.-++... ..+..+.-.+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 344556678888888877777654 5567777777888888888888877666544 356666666777777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDEST----FSAL---------LCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVK 451 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~ 451 (554)
.++...++.++ +.||... |..+ +......+++.++++..+...+. .|. ...+..+..
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeee
Confidence 88888888877 6677542 2211 11234456777777777776552 333 234556777
Q ss_pred HHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 452 LLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
++...|++.+|++...+... +.|..++..-..+|.-...++.|+.-|+.+.+.+|++..+-.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 77788899999998888642 445778877788888888999999999999998888765443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.6e-06 Score=74.22 Aligned_cols=212 Identities=13% Similarity=0.016 Sum_probs=136.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC-ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCC--hHHHHH
Q 045069 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG-YLGLGIQVFETMSE---RNIITYNSVILGLGLHGF--TYQAFE 393 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~a~~ 393 (554)
+..++|......+++.. +-+..+|+....++...| ++++++..++.+.+ .+..+|+.....+.+.|+ .++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444432 222333433333444445 45677777766653 233345544444444454 366788
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc---CCh----HHHHHH
Q 045069 394 FFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA---GNL----EEAYSF 465 (554)
Q Consensus 394 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~ 465 (554)
+++++.+ ..| |..+|.....++...|+++++++.++++.+. -+.+..+|+....++.+. |.. ++++++
T Consensus 130 ~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 130 FTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888887 344 4557888888888888899999999988874 344556666666555444 222 456666
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC----------------
Q 045069 466 IWSLP--KPVDPAVSGALLSCCHIY----GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG---------------- 523 (554)
Q Consensus 466 ~~~~~--~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 523 (554)
..++. .+.+...|..+...+... +...+|.+.+.++.+.+|.++.....|+++|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 65543 366778888888877763 44567889999988889999999999999998643
Q ss_pred --ChhHHHHHHHHHh
Q 045069 524 --RWDDVMKLRDDIV 536 (554)
Q Consensus 524 --~~~~A~~~~~~~~ 536 (554)
..++|.++++.+.
T Consensus 286 ~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 286 LSDSTLAQAVCSELE 300 (320)
T ss_pred cccHHHHHHHHHHHH
Confidence 3467888888884
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-06 Score=72.57 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=123.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 045069 376 NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL 455 (554)
Q Consensus 376 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (554)
..+-..+...|+-+....+....... -.-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 55666777788888877777775542 222334455677788888999999999988877 577888889999999999
Q ss_pred cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 456 AGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.|++++|..-|.+.. .+.++...+.+...+.-.||.+.|..++..+....+.+..+...|+-+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999988887764 366778888888888888999999999988888888888888888888888999998888765
Q ss_pred H
Q 045069 534 D 534 (554)
Q Consensus 534 ~ 534 (554)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00031 Score=65.88 Aligned_cols=422 Identities=13% Similarity=0.080 Sum_probs=244.0
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHH
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACIT 111 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 111 (554)
+-|..+|+.||+-+..+ .+++++..++++. ..+...|..-|+.-.+.++++....+|.+.+..- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 66889999999988877 8999999999876 2356789999999999999999999999987753 3556666655
Q ss_pred HHhh-cCCChhhHH----HHHHH-HHHhcCCCCH-hHHHHHHHH---------HHcCCCHhHHHHhhcccCC-C------
Q 045069 112 RACS-ENSDLPGLR----FVHGG-AIVSGLGRDS-ITSSALVTA---------YSKLSLIDEAIKVFDGVSD-P------ 168 (554)
Q Consensus 112 ~~~~-~~~~~~~a~----~~~~~-~~~~~~~~~~-~~~~~li~~---------~~~~g~~~~A~~~~~~~~~-~------ 168 (554)
.--. ..|+....+ +.|+- +.+-|.++-. ..|+..+.- |..+.+++...++++++.. |
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 5433 223333322 22332 2334543322 234444432 3445567777888887764 1
Q ss_pred ---CcchHHHHHHHHH-------hCCChhhHHHHHHHHHH--CCCCCChhh---------------HHHHHHHcccCCcc
Q 045069 169 ---DLVLCNSMISGFA-------HCGFWDKSLQLFDWMLR--LGKTPDEYT---------------LVGLISGLWEPSLL 221 (554)
Q Consensus 169 ---~~~~~~~li~~~~-------~~~~~~~a~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~~~~~~ 221 (554)
|-..|..-|+... +...+-.|.++++++.. +|..-...+ |..+|.- -+.+-.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCc
Confidence 2222222222111 23345667777776643 233222111 2222211 111100
Q ss_pred c---------hhhHHHHHH-HHhcCCCchhHH-----HHHHHHHHhcCCh-------hhHHHHHhhcCC----CChhhHH
Q 045069 222 S---------VGQGIHGFC-LKSSFDSYDYVS-----SVLVSMYARCNCM-------NSAYHVFNSLFH----PDLVTWS 275 (554)
Q Consensus 222 ~---------~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~~-------~~a~~~~~~~~~----~~~~~~~ 275 (554)
. ...-.++.+ .-.+..|+.... ....+.+...|+. +++.+++++... .+...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011112221 122333332211 1112233344443 344455554422 2333333
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc-hHHHHHHHHHHH
Q 045069 276 ALITGY---SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL-SVMVSSALVDMY 351 (554)
Q Consensus 276 ~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 351 (554)
.+.+-- ......+.....++++...-..--..+|...+....+..-+..|..+|.++.+.+..+ .+.++++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 332211 1111355555666666544333333466777777778888888899999988877766 778888888877
Q ss_pred HccCChHHHHHHHhccCC--CCcchH-HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCchHHH
Q 045069 352 SKCGYLGLGIQVFETMSE--RNIITY-NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES--TFSALLCACCHGGLVNDG 426 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a 426 (554)
|. ++.+-|.++|+--.+ +|...| ...+.-+...++-..+..+|++.+..++.|+.. .|..++.--..-|+...+
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 65 678888888886543 454443 556777788888888899999988886666654 788888888888998888
Q ss_pred HHHHHHhHHHhC--CCCChhHHHHHHHHHHhcCChHH
Q 045069 427 REIFTRMTEEYG--IQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
.++-+++...+. ..+....-..+++-|.-.+....
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 888887766433 22333334445555555554433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.9e-06 Score=71.07 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=113.7
Q ss_pred HHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045069 345 SALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG 421 (554)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 421 (554)
..+-..+...|+-+....+...... .|.......+....+.|++..|...+++.... -++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 4455666667777777776666442 33345555788888888888888888888773 3456668888888888888
Q ss_pred chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 045069 422 LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAH 499 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 499 (554)
+++.|..-|.+..+- .+-++..++.+.-.|.-.|+.+.|..++..... +.+...-..+..+....|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888888888772 334466677888888888888888888877542 3467777788888888888888888766
Q ss_pred HHH
Q 045069 500 QLF 502 (554)
Q Consensus 500 ~~~ 502 (554)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.8e-08 Score=55.20 Aligned_cols=32 Identities=34% Similarity=0.717 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-05 Score=77.04 Aligned_cols=451 Identities=11% Similarity=0.011 Sum_probs=238.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhc-CCCCHhHHHHHHHH
Q 045069 70 FLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG-LGRDSITSSALVTA 148 (554)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 148 (554)
..|..|...|..-.+...|...|+...+.+. .+......+...+++..+++.|..+.-..-+.. ...-..-|..+.-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3466666666666667777777777766432 245556666777777777777776621111110 00011122223334
Q ss_pred HHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHH--HHcccCCccch
Q 045069 149 YSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI--SGLWEPSLLSV 223 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~ 223 (554)
|.+.++...|+.-|+.... .|...|..+..+|.+.|++..|+++|.+.... .|+. +|...- -.-+..|.+..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHH
Confidence 5556666677766666554 35556777788888888888888888776553 3432 222111 12345677777
Q ss_pred hhHHHHHHHHhc------CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHH-HHHHhcC-C---HHHHHH
Q 045069 224 GQGIHGFCLKSS------FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALI-TGYSQQG-D---YGKALY 292 (554)
Q Consensus 224 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~g-~---~~~a~~ 292 (554)
+...++.+.... ...-..++-.+...+.-.|-...|.+.+++-. ..+...+ ...+... . ...|..
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 776666554321 11111122222222222333333444433321 1111111 1100000 0 112223
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHH-----HHHhcCCchHHHHHHHHHHHHc----c----CChHH
Q 045069 293 YFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGY-----VIQHGFELSVMVSSALVDMYSK----C----GYLGL 359 (554)
Q Consensus 293 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~ 359 (554)
+|-... .. .|+......+..-....+....-. ++-- ........+..+|..|+..|.+ . .+...
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 333222 11 333333322222222222221100 0000 0011111223333333333322 1 22335
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 360 GIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 360 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
|+..+....+ .+..+|+.|.-. ...|.+.-|...|-+-.. ..|. ..+|..+.-.+.+..+++.|...|...+.
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 6666665543 555667766555 666788888777766665 3444 44788888888999999999999998876
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----C--CCCChhhHHHHHHHHHhcCChHH----------HHHHH
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL-----P--KPVDPAVSGALLSCCHIYGNSDL----------AEIVA 498 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~----------A~~~~ 498 (554)
-.|.+...|-.........|+.-++..+|.-- . ..++...|.........+|+.++ |--.+
T Consensus 879 --LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 --LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred --cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 23445555655555556778888888887651 1 13444444444444445555443 44455
Q ss_pred HHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 499 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++.....|+....|...+....+.+.+++|.+...+++
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666689999999999999999999999999888765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-06 Score=82.90 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=122.8
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045069 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 417 (554)
+|--..-..+...+...|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+|++.-|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 343444455666777777777777777764 3566667777777777777777776666 456777777777766
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
....-+++|.++.+....+ .-..+.....+.++++++.+.++.-. .+....+|..+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 6666667777766665442 12222333344667777777776532 2456666777776677777777777
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 496 IVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
..|...+...|++...++.+..+|.+.|+..+|...+++..+-+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 77777777777777777777777777777777777777776655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-06 Score=69.67 Aligned_cols=157 Identities=9% Similarity=0.024 Sum_probs=119.8
Q ss_pred HHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 427 (554)
+-.|...|+++.+....+.+..|.. .+...++.+++...++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567788888777655544332210 1223667788888888888742 345668999999999999999999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 428 EIFTRMTEEYGIQAKTEHYIYMVKLL-GLAGN--LEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
..|++..+- .+.+...+..+..++ ...|+ .++|.+++++.. .+.+...+..+...+...|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999872 445678888888874 67777 599999999975 36688889999999999999999999999999
Q ss_pred hcCCCCchhHHHH
Q 045069 503 ENDPRKGAYKVML 515 (554)
Q Consensus 503 ~~~p~~~~~~~~l 515 (554)
+..|++..-+..+
T Consensus 172 ~l~~~~~~r~~~i 184 (198)
T PRK10370 172 DLNSPRVNRTQLV 184 (198)
T ss_pred hhCCCCccHHHHH
Confidence 9988776555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-06 Score=81.86 Aligned_cols=215 Identities=15% Similarity=0.093 Sum_probs=122.2
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 316 (554)
+|-...-..+...+.+.|-...|..+|++ ...|..++.+|...|+..+|..+..+-.+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 34444455666667777777777777765 34455666677777777777776666555 356666665555554
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
....-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 4444455555554443221 111222222335666666666664332 233455555556666666666666
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 394 FFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
.|..... ..||.. .|+.+-.+|.+.++-.+|...+++..+- . ..+..+|...+-...+.|.+++|.+.+.++
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 6666665 455544 5666666666666666666666666552 3 333444555555556666666666666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-06 Score=76.58 Aligned_cols=196 Identities=11% Similarity=0.046 Sum_probs=146.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCCC---cchHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSERN---IITYNSVILGLGLHG-FTYQAFEFFRDIIEKGLNPDE-STFSALLCAC 417 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~ 417 (554)
++..+-..+...++.++|+.+.+.+.+.+ ..+|+.-...+...| ++++++..++++.+. .|+. .+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence 33444455666788999999999887533 335555555666667 689999999999984 4443 4666655555
Q ss_pred hcCCch--HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc---CC
Q 045069 418 CHGGLV--NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---GN 490 (554)
Q Consensus 418 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~ 490 (554)
.+.|+. +++..+++++.+ .-+-+..+|+....++.+.|+++++++.++++. .+.+...|......+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 666653 678889988887 345678899999999999999999999999975 366778887777666554 22
Q ss_pred ----hHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcCCcc
Q 045069 491 ----SDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 491 ----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+.++.+..++++.+|++.+.+..+..++.. .++..+|.+.+.++.+.++..
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 3578888889999999999999999999988 345678999998887755443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-05 Score=80.67 Aligned_cols=233 Identities=9% Similarity=0.023 Sum_probs=139.1
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcC--CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLF--HPD-LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAA 315 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 315 (554)
+...+..|+..|...+++++|.++.+... .|+ ...|..+...+.+.++.+++..+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 34455666677777777777777766542 222 23344444455555555444433 1 2222
Q ss_pred HhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHH
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 392 (554)
.....++..+..+...+.+. .-+...+..+..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22333333333334444432 22334666677777777777777777777664 3455667777777777 777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
+++.+.+.. +...+++..+.++|.++.. ..+.+...+..+.+.....-. ..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~------------~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHRE------------FT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhc------------cc
Confidence 777776552 4555677777777777765 233333333333333222211 12
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
.-..++..+...|...++++++..+++.+++.+|.+......++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 234455566677888888999999999999999999888888888876
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4e-06 Score=70.31 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=78.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
++-+....|+.+.|..+++.+.+. + |.+. .-..-..-+...|.+++|.++++.+.+. -+.|..++..-+-.....
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHc
Confidence 333444455555555555555543 2 3222 1111111233345555555555555552 233444444444444445
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC---ChhHHHHH
Q 045069 457 GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG---RWDDVMKL 531 (554)
Q Consensus 457 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~ 531 (554)
|+.-+|++-+.... ...|...|..+...|...|++++|.-.+++++-..|-++.++..+++.+.-.| +.+-|+++
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555555444432 24455555555555555555555555555555555555555555555544333 44455555
Q ss_pred HHHHhhcCC
Q 045069 532 RDDIVDNGL 540 (554)
Q Consensus 532 ~~~~~~~~~ 540 (554)
|.+.++...
T Consensus 214 y~~alkl~~ 222 (289)
T KOG3060|consen 214 YERALKLNP 222 (289)
T ss_pred HHHHHHhCh
Confidence 555555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-05 Score=64.06 Aligned_cols=247 Identities=14% Similarity=0.056 Sum_probs=145.8
Q ss_pred cCChhhHHHHHhhc-CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhH-HHH
Q 045069 253 CNCMNSAYHVFNSL-FH-PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA-VIH 329 (554)
Q Consensus 253 ~~~~~~a~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~ 329 (554)
.|.+..++..-+.. .. .+...-.-+-++|...|.+..... ++.. |-.|....+..+.......++.+.-. ++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 34454444443333 11 222333334455555665443222 1211 12333333333333333333333322 233
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST 409 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 409 (554)
+.+.......+......-...|+..|++++|++..... .+....-.=+..+.+..+.+-|.+.+++|.+- .+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 34444433333333334445688888888888888873 23333333344566777788888888888772 24557
Q ss_pred HHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 410 FSALLCACCH----GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 410 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
.+.|..++.+ .+.+..|.-+|+++.+ ..+|++.+.+..+.+....|++++|..++++.. ...++.++..++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 7766666553 4568888889999877 478888888888888888889999988888864 3567777777776
Q ss_pred HHHhcCCh-HHHHHHHHHHHhcCCCCch
Q 045069 484 CCHIYGNS-DLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 484 ~~~~~~~~-~~A~~~~~~~~~~~p~~~~ 510 (554)
+....|.. +...+.+.++....|..+.
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 66666654 4456677777777777654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.5e-06 Score=77.78 Aligned_cols=245 Identities=14% Similarity=0.023 Sum_probs=154.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHH
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 360 (554)
+.+.|++.+|.-.|+..++.. +-+...|..|-......++-..|+..+++..+.. +-+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 445555556555555555442 1223344444445555555555555555555544 33455555666666666666666
Q ss_pred HHHHhccCC--C----------CcchHHHHHHHHHcCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 045069 361 IQVFETMSE--R----------NIITYNSVILGLGLHGFTYQAFEFFRDII-EKGLNPDESTFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 361 ~~~~~~~~~--~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 427 (554)
.+.++.-.. | +...-+. ..+..........++|-++. +.+..+|+.....|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 666654421 0 0000000 11111122334444554444 4554567777777877788899999999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
..|+.... .-|-|..+||.|.-.++...+.++|++.|.++.. |.-...+..|..+|...|.+++|...|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999976 2344678899999999999999999999998753 5566778889999999999999999999888874
Q ss_pred CC-----C-----chhHHHHHHHHHccCChhHHHHH
Q 045069 506 PR-----K-----GAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 506 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
+. . ..++..|-.++.-.++.|-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 32 1 24666666666667776644443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=70.49 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
..++..+...|++++|.+.++.+. .+.++..+..+..++...|++++|...++++.+.+|.++..+..++.+|...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 334444444444444444444432 133444444444455555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHhhcC
Q 045069 525 WDDVMKLRDDIVDNG 539 (554)
Q Consensus 525 ~~~A~~~~~~~~~~~ 539 (554)
+++|.+.+++..+..
T Consensus 101 ~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 101 PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.1e-07 Score=69.61 Aligned_cols=97 Identities=10% Similarity=-0.080 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
......+...+...|++++|.++|+.+. .+.+...|..|..++...|++++|+..|.++...+|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4445566677788999999999998864 47788899999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhcC
Q 045069 521 EDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~ 539 (554)
..|+.+.|++.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-06 Score=73.92 Aligned_cols=183 Identities=17% Similarity=0.084 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCC-c-hHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcc----h
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE-L-SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNII----T 374 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 374 (554)
......+......+...|+++.|...++++...... | ....+..+..++...|++++|...++.+.+ |+.. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888899999999999999999876522 1 234677888999999999999999999874 4322 3
Q ss_pred HHHHHHHHHcC--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhH
Q 045069 375 YNSVILGLGLH--------GFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 445 (554)
+..+..++... |++++|.+.++++.+. .|+.. .+..+.... . . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHH-H--------HH
Confidence 55555556554 7889999999999884 55543 322221110 0 0 0000 0 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
...+...+.+.|++++|+..+++... +..+..+..++.++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23566678888999999988888642 22356788888889999999999998888877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-05 Score=79.21 Aligned_cols=137 Identities=15% Similarity=0.034 Sum_probs=106.2
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHH
Q 045069 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM 449 (554)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 449 (554)
++..+..|.....+.|.+++|..+++...+ +.|+.. ....+...+.+.+++++|+..+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 466777778888888888888888888888 677765 567777788888888888888888876 344456677778
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 450 VKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
..++.+.|++++|..+|+++. .+.+..++..+..++...|+.++|...|+++++...+....
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 888888888888888888865 24457788888888888888888888888888885443333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-05 Score=64.12 Aligned_cols=170 Identities=10% Similarity=0.039 Sum_probs=121.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-C
Q 045069 292 YYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-R 370 (554)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 370 (554)
++.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+.+-|.+.++.|.+ .
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445444444554555555567788888888888776521 223333334557788889999999999987 4
Q ss_pred CcchHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHH
Q 045069 371 NIITYNSVILGLGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHY 446 (554)
Q Consensus 371 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 446 (554)
+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++....+ -..++.+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHH
Confidence 44566767776654 45689999999999886 7899999999999999999999999999999884 55567777
Q ss_pred HHHHHHHHhcCChHHHH-HHHHhCC
Q 045069 447 IYMVKLLGLAGNLEEAY-SFIWSLP 470 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~-~~~~~~~ 470 (554)
..++-.-...|...++. +.+.++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 66666666677665543 4555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.7e-06 Score=76.31 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (554)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+.. .+.+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667788899999999998774 244 45568888888888889999988864 24566777777778899
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
.++++.|+.+.+++.+..|.+...|..|+.+|...|++++|+-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-05 Score=71.73 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 461 (554)
..|+++.|+..++.++.. .|+. .-.......+.+.++.++|.+.++++.. ..|+ ....-.+.++|.+.|+..+
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence 445555555555555442 2332 2333334444555555555555555544 2232 3334445555555555555
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 462 AYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 462 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
|+.+++... .+.++..|..|..+|...|+..++..... +.|...|++++|...+....+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 555554432 24455555555555555555444443322 3444555566666666555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-05 Score=70.17 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=93.7
Q ss_pred HHccCChHHHHHHHhccCC--CCcc-hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHH
Q 045069 351 YSKCGYLGLGIQVFETMSE--RNII-TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDG 426 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a 426 (554)
+...|+.++|+..++.+.. |+.. .+......+.+.++..+|.+.++++.. ..|+. .....+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHH
Confidence 4456777777777777652 4443 344455667777888888888887777 55663 3455666777777888888
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
..+++.... ..+-|+..|..|.++|...|+..+|..-. ...+...|+++.|+..+..+.+..
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 777777766 46667777888888888777777765443 234566777788877777777764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-05 Score=65.04 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=126.8
Q ss_pred CCChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 385 HGFTYQAFEFFRDIIE---KG-LNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~---~g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
..+.++..+++.++.. .| ..|+.. .|..+.-+....|+.+-|...++.+..+ ++-+..+-..-.-.+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 3456777777777764 34 566766 4667777788899999999999999985 455555555555567788999
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++|+++++.+. .|.|..++..-+......|+.-+|++-+....+..|.|...+..++++|...|++++|.=.+++++-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999975 3667778877777788889999999999999999999999999999999999999999999999987
Q ss_pred cCCc
Q 045069 538 NGLR 541 (554)
Q Consensus 538 ~~~~ 541 (554)
..+.
T Consensus 183 ~~P~ 186 (289)
T KOG3060|consen 183 IQPF 186 (289)
T ss_pred cCCC
Confidence 6543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.3e-06 Score=64.95 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 045069 394 FFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 394 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 470 (554)
.+++..+ ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45544 35666777788899999999999998773 45577888889999999999999999988863
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
.+.+...+..+..++...|+++.|...++++++..|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 3567788888888999999999999999999999998876443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.8e-05 Score=76.63 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=132.3
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHh-cC---CchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHH
Q 045069 308 LIASVLAAAAKSANVWPGAVIHGYVIQH-GF---ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILG 381 (554)
Q Consensus 308 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~ 381 (554)
.|-..|......++.+.|.++.++++.. ++ .--...|.++++.-..-|.-+...++|+++.+ .....|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444455555555555555554432 11 11123455555555555566666667776664 223456667777
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHHHhcCCh
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA--KTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 459 (554)
|.+.+++++|.++++.|.++ +.-....|...+..+.+..+-+.|..++.+..+. ++. ........++.-.+.|+.
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCc
Confidence 77777777777777777765 3444556777777777777777777777777652 222 344445555555667777
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCch-hHHHHHHHHHccCChhHHHHHHHH
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRKGA-YKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
+.+..+|+... .|.....|..++..-.++|+.+.+..+|++++.+. |.... +|....+.-...|+-+.++.+=.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 77777777654 24456677777777777777777777777777763 33333 333333333345665555444444
Q ss_pred Hh
Q 045069 535 IV 536 (554)
Q Consensus 535 ~~ 536 (554)
+.
T Consensus 1697 A~ 1698 (1710)
T KOG1070|consen 1697 AK 1698 (1710)
T ss_pred HH
Confidence 33
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0001 Score=75.56 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (554)
..+..+..+|.+.|+.++|..+++++.+- . +-++.+.|.++..|... ++++|.+++.+.. ..+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV------------~~~i~ 181 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI------------YRFIK 181 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH------------HHHHh
Confidence 35555555555666666666666665552 2 33455555555555555 5666655554432 12344
Q ss_pred cCChHHHHHHHHHHHhcCCCCchh--------------------HHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAY--------------------KVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~--------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.+++..+.++++++.+.+|++... +..+-..|...++|+++.++++.+++...+...
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 445555555555555555554433 333446677888999999999999987765543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-05 Score=63.17 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=70.5
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCh----hhHHHHHHHHHhcCC
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDP----AVSGALLSCCHIYGN 490 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~ 490 (554)
..++...+...++.+.+. .+.+ ....-.+...+...|++++|...|+.... .+++ .....+...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 356666666666666663 2222 22333455566666777777777766542 2222 233445666777777
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
+++|+..++.. ...+-.+..+..++.+|.+.|++++|+..|++.
T Consensus 101 ~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777777552 334445667777888888888888888888764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=50.08 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCc
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDN 104 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 104 (554)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.7e-06 Score=58.59 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC-ChhHHHHHHHHHhhcC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG-RWDDVMKLRDDIVDNG 539 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 539 (554)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++.++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46678889999999999999999999999999999999999999999999 7999999999988754
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=49.02 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHcCCCC
Q 045069 70 FLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKP 102 (554)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 102 (554)
.+||.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567888888888888888888888888777776
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.2e-06 Score=57.37 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=53.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|+.+++++++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999999999999987654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-05 Score=70.88 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG 421 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 421 (554)
.....|+..+...++++.|..+|+++.+.+......++..+...++-.+|.+++++.++. .+-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344556677777888999999999988777777777888888888888999999998874 2234556666677788999
Q ss_pred chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 422 LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
+++.|+.+.+++.+ -.|.+..+|..|+.+|...|++++|+-.++.++
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999987 345557799999999999999999999998876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=59.60 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
+..++..+...|++++|.+.+++... +.+...+..+...+...+++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45566777778888888888877532 4445667778888888899999999999999999988888999999999999
Q ss_pred ChhHHHHHHHHHhhcC
Q 045069 524 RWDDVMKLRDDIVDNG 539 (554)
Q Consensus 524 ~~~~A~~~~~~~~~~~ 539 (554)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998887654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-05 Score=67.91 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=94.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCchhHH
Q 045069 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---GNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
-+-|...|-.|..+|...|+.+.|..-|.+.. .++++..+..+..++... .+..++..+++++++.+|.+.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45578888888899999999988888888764 366777777777775433 3567899999999999999999999
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeeee
Q 045069 514 MLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550 (554)
Q Consensus 514 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 550 (554)
.|+..+...|++.+|...++.|++......|..+.|+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 9999999999999999999999999988888877665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=60.82 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-PVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSN 517 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 517 (554)
+..++..+.+.|++++|.+.+..+.. .|+ ...+..+..++...|+++.|...++++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444455555555555555555421 111 2344445556666666666666666666655543 345566666
Q ss_pred HHHccCChhHHHHHHHHHhhcC
Q 045069 518 TYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 518 ~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++.+.|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=58.75 Aligned_cols=123 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC--hhHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE----STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK--TEHYIY 448 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 448 (554)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... ...|+ ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 3677777777777777742 332 23344556677788888888888888774 32222 223445
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
+...+...|++++|+..++.... ...+..+...+..+...|+.++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777888888888888877543 345556667777788888888888888765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.9e-06 Score=48.63 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCh
Q 045069 171 VLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDE 205 (554)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 205 (554)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-06 Score=61.80 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHhCCC-CC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH
Q 045069 456 AGNLEEAYSFIWSLPK-PV---DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
.|++++|+.+++++.. .| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3566666666666531 11 344555567777777888888888777 555666667777778888888888888888
Q ss_pred HHH
Q 045069 532 RDD 534 (554)
Q Consensus 532 ~~~ 534 (554)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.01 Score=56.13 Aligned_cols=175 Identities=10% Similarity=0.034 Sum_probs=127.9
Q ss_pred hHHHHHHHhccCC----CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHH
Q 045069 357 LGLGIQVFETMSE----RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 357 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
.+.....+++... .-..+|...+..-.+......|..+|.++.+.+..+ +...+++++..+| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4445555555442 334578888888888888999999999999988888 5667888887665 478899999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 432 RMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP-----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
--.++ +..++.--...++.+...++-..|..+|++.... .....|..++.--..-|+...+..+-++.....|
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 88775 4444555577888889999999999999997543 2347899999999999999999999999888877
Q ss_pred CCc----hhHHHHHHHHHccCChhHHHHHHHH
Q 045069 507 RKG----AYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 507 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
.+. ..-..+.+-|.-.+++..-..-++.
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 321 1223344566666665544444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=74.90 Aligned_cols=108 Identities=10% Similarity=-0.015 Sum_probs=90.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGN 490 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 490 (554)
-...+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++. .+.+...+..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999873 45567788888999999999999999998874 35677888889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
+++|+..++++++.+|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888776554433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0082 Score=55.04 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=59.3
Q ss_pred HHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 426 (554)
-+.-+...|+...|.++-.+..-|+-.-|...+.+++..+++++...+... +-++.-|..++.+|.+.|+..+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344455556666666666666556666666666666666666655543321 11234566666666666666666
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
..+..++. +..-+..|.+.|++.+|.+..-+
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555431 13345556666666666555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.7e-06 Score=46.70 Aligned_cols=33 Identities=27% Similarity=0.516 Sum_probs=24.2
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP 405 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 405 (554)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.02 Score=57.58 Aligned_cols=465 Identities=9% Similarity=-0.009 Sum_probs=232.4
Q ss_pred HHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhH
Q 045069 47 LYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123 (554)
Q Consensus 47 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 123 (554)
.+.|.|+.++|..+++... ..|..+...+-..|...++.++|..+|+...+. .|+..-...+..++.|.+++.+-
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999998888765 346778888888999999999999999998875 56777777888889988888766
Q ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHcCC-C---------HhHHHHhhcccCCCC--cch---HHHHHHHHHhCCChhh
Q 045069 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLS-L---------IDEAIKVFDGVSDPD--LVL---CNSMISGFAHCGFWDK 188 (554)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~~~~~~~~--~~~---~~~li~~~~~~~~~~~ 188 (554)
.++--++-+. .+-++..+=++++.+...- . ..-|.+.++.+.+.+ ..+ ...-...+-..|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 6655555553 2234444434444443321 1 223444444444322 111 1112233445778888
Q ss_pred HHHHHH-HHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH----------------
Q 045069 189 SLQLFD-WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA---------------- 251 (554)
Q Consensus 189 a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------- 251 (554)
|++++. ..-+.-...+...-+.-+..+...+++.+..++-..+...|... |...++.+.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhh
Confidence 888883 33333233333444445556666777777777777776666443 222222111
Q ss_pred hcCChhhHHHHHhhcCCC-ChhhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHH
Q 045069 252 RCNCMNSAYHVFNSLFHP-DLVTWSALITGY---SQQGDYGKALYYFRKLNMQGKKA-------------DPVLIASVLA 314 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~-------------~~~~~~~l~~ 314 (554)
..+..+...+...+.... ....|-+-+.+. -.-|+.+++...|-+ +-|.+| +..-...++.
T Consensus 285 ~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~ 362 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMS 362 (932)
T ss_pred hhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHH
Confidence 111222222222222111 112222222222 234666665544422 122222 1111222333
Q ss_pred HHhccCC-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC-----hHHHHHHHhcc----CC---------CCc---
Q 045069 315 AAAKSAN-VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY-----LGLGIQVFETM----SE---------RNI--- 372 (554)
Q Consensus 315 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~----~~---------~~~--- 372 (554)
.+....+ .....+.++. +.+.+..-.-.|. -+.-..++.+. .+ |..
T Consensus 363 ~l~~~~~~~s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~ 430 (932)
T KOG2053|consen 363 KLVLADDDSSGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSF 430 (932)
T ss_pred HhhccCCcchhhHHHHHH------------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 3322211 1111111111 1111111111111 01111111110 00 111
Q ss_pred ------chHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh
Q 045069 373 ------ITYNSVILGLGLHGFTY---QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 373 ------~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
.+.+.|+..+.+.++.. +|+-+++.-... -+-|..+=..+|+.|+-.|-+..|.++|+.+--+ .+..|.
T Consensus 431 g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DT 508 (932)
T KOG2053|consen 431 GDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDT 508 (932)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-Hhhhcc
Confidence 13456677777777755 344444444332 1223345556777888888888888888887665 566665
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCchhHHHHH
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLPK---PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP----RKGAYKVMLS 516 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~ 516 (554)
..|. +.+.+...|++..+...++.... ..-..+- .++....+.|.+.+..+...--.+.+- .-..+-....
T Consensus 509 lgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~-eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l 586 (932)
T KOG2053|consen 509 LGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETP-EYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQL 586 (932)
T ss_pred chHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhH-HHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 33445566777777777666431 1111222 223333456666655554332222211 1112333455
Q ss_pred HHHHccCChhHHHHHHHHHh
Q 045069 517 NTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~ 536 (554)
..+...++.++-...+..+.
T Consensus 587 ~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 587 SLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHhCCcHHHHHHHHhccc
Confidence 66677788877777777665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=55.19 Aligned_cols=56 Identities=16% Similarity=0.356 Sum_probs=46.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
...|++++|++.++++.+.+|++..+...++.+|.+.|++++|.++++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788888888888888888888888888888888889999998888888776543
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.8e-05 Score=65.49 Aligned_cols=108 Identities=17% Similarity=0.056 Sum_probs=72.1
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+.+.+++.+|+..|.+.++ -.+-|...|..-..+|.+.|.++.|++-.+... .+....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4556777777777777765 233456666666777777777777777666653 244556677777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
++.|+++++++|++.++...|-.+-.+.+..+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 77777777777777777766655544444433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=56.10 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC----ChhhHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PV----DPAVSGALL 482 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~ 482 (554)
++..+...+.+.|++++|...|+.+.+...-.+ ....+..+..++.+.|++++|.+.++.+.. .| .+..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777777665311101 133455566677777777777777766531 12 244566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
.++...|+.++|...++++++..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7778888888888888888888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.031 Score=56.41 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=105.9
Q ss_pred hcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHh--hcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHH
Q 045069 81 LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC--SENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEA 158 (554)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 158 (554)
..+++..|+....++.+. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345566666666665554 2332 233444443 3666666666666655544433 556666666666666666666
Q ss_pred HHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC-c---------cchhhH
Q 045069 159 IKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS-L---------LSVGQG 226 (554)
Q Consensus 159 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~---------~~~a~~ 226 (554)
..+|++..+ |+......+..+|.+.+++.+-.+.--+|-+ ..+-+...|-++++...+.- . ...|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 666666655 4433333444555555555433222222222 12233444444444332111 0 112333
Q ss_pred HHHHHHHhc-CCCchhHHHHHHHHHHhcCChhhHHHHHhhc-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045069 227 IHGFCLKSS-FDSYDYVSSVLVSMYARCNCMNSAYHVFNSL-----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300 (554)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 300 (554)
..+.+.+.+ ......=.......+...|++++|++++..- ...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 344443333 1111111122223345567777777776321 2333334444556666677777777777777666
Q ss_pred C
Q 045069 301 G 301 (554)
Q Consensus 301 ~ 301 (554)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 5
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=67.67 Aligned_cols=89 Identities=9% Similarity=-0.029 Sum_probs=73.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
....+...|++++|+..|+++++. .|+ ...|..+..+|...|++++|+..++++.+. -+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345567789999999999999984 454 557888888899999999999999999773 344677888889999999
Q ss_pred CChHHHHHHHHhCC
Q 045069 457 GNLEEAYSFIWSLP 470 (554)
Q Consensus 457 g~~~~A~~~~~~~~ 470 (554)
|++++|+..+++..
T Consensus 84 g~~~eA~~~~~~al 97 (356)
T PLN03088 84 EEYQTAKAALEKGA 97 (356)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0028 Score=60.92 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG 454 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (554)
...+..-+.+...+..|.++|.+|-+ ...++..+...+++++|..+-+...+ +.|| +|....+.++
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe---~~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE---FKDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc---cccc--ccchHHHHhh
Confidence 33333334444444445555544432 12234444555555555554444322 2222 2333444445
Q ss_pred hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 455 LAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 455 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...+++||.+ ++.+.|+..+|.++++++...
T Consensus 816 E~DrFeEAqk-------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQK-------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHH-------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555555543 345667777777777776544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.2e-05 Score=53.31 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+.+.++++.|.++++++++.+|+++..+...+.++.+.|++++|.+.++++.+.++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 457788999999999999999999999999999999999999999999999998776543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=65.36 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=83.6
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
.-+.+.+++.+|+..|.++. .+.++..|..-..+|.+.|.++.|++-.+.++..+|.....|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999999865 3678888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCccC
Q 045069 529 MKLRDDIVDNGLRKE 543 (554)
Q Consensus 529 ~~~~~~~~~~~~~~~ 543 (554)
++.|++.++..+...
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 999999988765544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0059 Score=53.91 Aligned_cols=171 Identities=11% Similarity=0.010 Sum_probs=102.3
Q ss_pred HHHHHccCChHHHHHHHhccCC--CCcc-h---HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE--RNII-T---YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCH 419 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 419 (554)
...+...|++++|.+.|+.+.. |+.. . .-.++.++.+.++++.|...+++..+. .|+. ..|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3345556788888888777763 3332 1 133556677788888888888888773 3332 233333333221
Q ss_pred --C---------------Cc---hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHH
Q 045069 420 --G---------------GL---VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSG 479 (554)
Q Consensus 420 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 479 (554)
. .| ...|...|+.++++ . |+. .-..+|...+..+.... ...-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S-------------~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNS-------------QYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cCC-------------hhHHHHHHHHHHHHHHH-HHHHH
Confidence 1 11 23455555565553 2 222 12233333222221110 01112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+..-|.+.|.+..|..-++.+++..|+.+ .....++.+|...|..++|.++.+.+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 355668899999999999999999987765 5666778899999999999998877643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=52.15 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHcCC-CCCcccHHHHHHHhhcCC--------ChhhHHHHHHHHHHhcCCCCHhHHH
Q 045069 73 NSIIRAYALAHRFNDAKSLFKNLLRTQL-KPDNFTYACITRACSENS--------DLPGLRFVHGGAIVSGLGRDSITSS 143 (554)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (554)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-.++.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 999999999999877653 2445678899999999999999999
Q ss_pred HHHHHHHc
Q 045069 144 ALVTAYSK 151 (554)
Q Consensus 144 ~li~~~~~ 151 (554)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0039 Score=50.21 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-C---CChhhH
Q 045069 403 LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-P---VDPAVS 478 (554)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~---~~~~~~ 478 (554)
..|+...-..|..+....|++.+|...|++...- -+.-|......+.++....++..+|...++++-. + .++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666667777888888888888888887772 4455677777778888888888888888877532 2 244555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..+.+.+...|....|+..|+.+....|. +......+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66777888888888888888888887664 44444555677888877777665555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00023 Score=59.51 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK----PV-DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
.+..+...+...|++++|...+++... ++ ....+..+..++...|++++|...++++++..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444555555555555555554321 11 1345666667777777777777777777777777777777777777
Q ss_pred HccCC--------------hhHHHHHHHHHhhcC
Q 045069 520 AEDGR--------------WDDVMKLRDDIVDNG 539 (554)
Q Consensus 520 ~~~g~--------------~~~A~~~~~~~~~~~ 539 (554)
...|+ +++|.+++++....+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 77666 466666766666544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.9e-05 Score=43.36 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCC
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQL 100 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 100 (554)
+||.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.1e-05 Score=51.38 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=49.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
+...+...|++++|++.|+++. .+.+...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888888888888864 255778888889999999999999999999999999874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00022 Score=52.66 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=46.1
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 491 (554)
...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.++... .+.+...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444455555555555555431 22223444445555555555555555555432 122334555555566666666
Q ss_pred HHHHHHHHHHHhcCC
Q 045069 492 DLAEIVAHQLFENDP 506 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p 506 (554)
+.|...++++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00073 Score=53.78 Aligned_cols=90 Identities=12% Similarity=-0.015 Sum_probs=74.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCh
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 525 (554)
....-+...|++++|..+|.-+. .+.++..|..|..++...+++++|+..|..+...+++||......+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34444567888888888887753 4667777888888888889999999999999888888998889999999999999
Q ss_pred hHHHHHHHHHhh
Q 045069 526 DDVMKLRDDIVD 537 (554)
Q Consensus 526 ~~A~~~~~~~~~ 537 (554)
++|+..|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999998888776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00062 Score=56.89 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=85.5
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD--ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3456666677778888888888888876433332 246777788888889999998888888763 333466666777
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 451 KLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
.++...|+...+..-++.. ...+++|.++++++.+.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 7777777766655333221 123677888999998888877 333444444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.9e-05 Score=42.78 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 045069 171 VLCNSMISGFAHCGFWDKSLQLFDWMLRLGK 201 (554)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 201 (554)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=64.37 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++..+..+.......|++++|...++++++.+| +...|..++.++...|+.++|.+.++++.+.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444555555555555666666666666666666 3556666666666666666666666666555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00087 Score=65.96 Aligned_cols=141 Identities=12% Similarity=0.028 Sum_probs=97.4
Q ss_pred CCcchHHHHHHHHHc--C---CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcC--------CchHHHHHHHHHhHH
Q 045069 370 RNIITYNSVILGLGL--H---GFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHG--------GLVNDGREIFTRMTE 435 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 435 (554)
.+...|...+.+... . ++...|..+|++.++ ..|+.. .|..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666665332 2 236788899999988 667754 454443333221 123344444444333
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
....+.+...|..+.-.....|++++|...++++. ..|+...|..++..+...|+.++|.+.++++...+|.++..|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 11234456778888777778899999999999964 356788899999999999999999999999999999988643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00036 Score=58.09 Aligned_cols=93 Identities=13% Similarity=-0.038 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
...+..++..+...|++++|+..+++.. ..+ ...++..+...+...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4455666667777788888888777753 111 23477888888899999999999999999999988888888888
Q ss_pred HHH-------ccCChhHHHHHHHHH
Q 045069 518 TYA-------EDGRWDDVMKLRDDI 535 (554)
Q Consensus 518 ~~~-------~~g~~~~A~~~~~~~ 535 (554)
++. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 788887665555543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.044 Score=50.97 Aligned_cols=233 Identities=9% Similarity=-0.016 Sum_probs=124.4
Q ss_pred HhCCCCCCHH-HHHHHHHHHhccCCcchhHHHHHHHHHhcCC----chHHHHHHHHHHHHccCChHHHHHHHhccC--CC
Q 045069 298 NMQGKKADPV-LIASVLAAAAKSANVWPGAVIHGYVIQHGFE----LSVMVSSALVDMYSKCGYLGLGIQVFETMS--ER 370 (554)
Q Consensus 298 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 370 (554)
...-+.|+.. ....+...+.. +.+++..+.+.+....+. --..++..++....+.++...|.+.+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3344455543 22333333333 444555554444333221 124566677777777888888877776554 34
Q ss_pred Ccch-------HHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHhcCCc-hHHHHHHHHHhHH
Q 045069 371 NIIT-------YNSVILGLGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALL---CACCHGGL-VNDGREIFTRMTE 435 (554)
Q Consensus 371 ~~~~-------~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~-~~~a~~~~~~~~~ 435 (554)
+... -..+-+..+. .-+...-+.+|+......+.... -...|+ .-+.+.|. -++|+++++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3321 1112222221 11233344556665554332211 122222 23445555 7888888888876
Q ss_pred HhCCCCChhHHHHHHH----HHHhc---CChHHHH---HHHHhCCCC----CChhhHHHHHHH--HHhcCChHHHHHHHH
Q 045069 436 EYGIQAKTEHYIYMVK----LLGLA---GNLEEAY---SFIWSLPKP----VDPAVSGALLSC--CHIYGNSDLAEIVAH 499 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~---~~~~~~~~~----~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 499 (554)
- -+-|...-|.+.. .|..+ ..+.+-+ ..+++...+ .+...-+.|..+ +..+|++.++.-.-.
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2 3334433333222 22221 1122222 122222222 233344555554 567899999988888
Q ss_pred HHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 500 QLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 500 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
-+.+..| ++.+|..++-++....+++||..++.++.
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 8888888 89999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=52.14 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHH
Q 045069 385 HGFTYQAFEFFRDIIEKGLN-PDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 462 (554)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++. + ..| +......+++++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666663221 12333444566666666666666666662 1 112 223333445666666666666
Q ss_pred HHHHH
Q 045069 463 YSFIW 467 (554)
Q Consensus 463 ~~~~~ 467 (554)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0025 Score=57.80 Aligned_cols=135 Identities=10% Similarity=0.069 Sum_probs=93.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA-CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56677777777777888888888887532 2223334333333 33356777789999888885 56677778888888
Q ss_pred HHhcCChHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 453 LGLAGNLEEAYSFIWSLPK-PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
+.+.|+.+.|..+|++... -+ ....|...+..-.+.|+.+.+..+.+++.+..|.+..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8888899999988888643 22 23478888888888899999999998888887775443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.2e-05 Score=51.22 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=31.6
Q ss_pred hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 455 LAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 455 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
..|++++|+++++++. .|.+...+..++.+|.+.|++++|.++++++...+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3445555555555432 2334455555555555555555555555555555555554444443
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.068 Score=52.40 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=23.0
Q ss_pred CchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 045069 53 VLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNL 95 (554)
Q Consensus 53 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 95 (554)
.+++|.++.+.-| -+..|..+...-...-.++-|...|-+.
T Consensus 678 gledA~qfiEdnP--HprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP--HPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred chHHHHHHHhcCC--chHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 4566666555543 3456766666555555555555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0049 Score=56.19 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=42.8
Q ss_pred HHhcC-CchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC-----C---CCh-hhHHHH
Q 045069 416 ACCHG-GLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----P---VDP-AVSGAL 481 (554)
Q Consensus 416 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~~-~~~~~l 481 (554)
.|... |++++|.+.|++..+-+..... ..++..++..+.+.|++++|.++|++... + .+. ..+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 5555555555555442111111 23344555556666666666666655320 1 011 112223
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+-++...||...|...+++....+|.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33455566777777777777666553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00048 Score=64.89 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHH
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAY 149 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 149 (554)
..++++.|...|..+.++.+++.=...|+-||..|++.|+..+.+.|++..|.++..+|..++...+..|+..-+.+|
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555555555544444444444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.004 Score=51.76 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=49.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD--ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...+++.... .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3455566666677777777777777766422221 235677777777788888888888777652 223344455555
Q ss_pred HHHH
Q 045069 451 KLLG 454 (554)
Q Consensus 451 ~~~~ 454 (554)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.058 Score=49.61 Aligned_cols=109 Identities=14% Similarity=0.205 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
+.+..+.-|...|....|.++-++. .+ |+...|...+++|+..++|++-.++... +.+|..|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566777888888887776655 44 7888999999999999999998887654 34668899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
|+..+|..+..++ | +..-+..|.+.|+|.+|.+..-+
T Consensus 251 ~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988872 1 14456788999999999877544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.056 Score=49.24 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=152.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPV--LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGL 359 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (554)
.-.|+++.|.+-|+.|... |... -...+.-...+.|+.+.|..+-+..-..- +.-.....+.+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3467777777777777532 1111 12223333345666676666666555443 2234566777888888888888
Q ss_pred HHHHHhccC-----CCCcch--HHHHHHHHH---cCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHH
Q 045069 360 GIQVFETMS-----ERNIIT--YNSVILGLG---LHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 360 A~~~~~~~~-----~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~ 428 (554)
|+++++.-. ++++.- --.|+.+-+ -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 888887654 233321 112222211 12235556665555555 677765 34455677889999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHH----HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAY----SFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+++.+-+. .|.+.+...+ .+.+.|+..... +-+..|+ +.+......+..+....|++..|..-.+.+...
T Consensus 285 ilE~aWK~---ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKA---EPHPDIALLY--VRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhc---CCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99999663 4555444332 234555543221 1122233 667777788888888999999999998888888
Q ss_pred CCCCchhHHHHHHHHHc-cCChhHHHHHHHHHhhc
Q 045069 505 DPRKGAYKVMLSNTYAE-DGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 505 ~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 538 (554)
.|. ..+|..|+++-.. .|+-.++...+-+.++.
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 775 4667777777655 49999999998887765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00085 Score=49.14 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------CcchhHHHHHHHHHhcCCchHHHHH
Q 045069 275 SALITGYSQQGDYGKALYYFRKLNMQGK-KADPVLIASVLAAAAKSA--------NVWPGAVIHGYVIQHGFELSVMVSS 345 (554)
Q Consensus 275 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (554)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999887653 2345667889999999999999999
Q ss_pred HHHHHHHc
Q 045069 346 ALVDMYSK 353 (554)
Q Consensus 346 ~l~~~~~~ 353 (554)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=62.43 Aligned_cols=117 Identities=11% Similarity=0.021 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh--cCCchHHHHHHHHHHHHccCChHHHHHHHhccCC----CCcchH
Q 045069 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH--GFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE----RNIITY 375 (554)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 375 (554)
.+.+...+..++..+....+++.+..++...... ....-..|..++++.|.+.|..+.++.+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444445555555555555555555555444432 1112222333555555555555555555443222 455555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 376 NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 376 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
|.||..+.+.|++..|.++..+|...+...++.|+..-+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555555444444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0088 Score=54.52 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=54.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcC-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHH
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLH-GFTYQAFEFFRDIIEK----GLNPD--ESTFSALLCA 416 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~ 416 (554)
|...+..|...|++..|-+.+. .+...|... |+++.|++.|++..+. | .+. ...+..+...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3334444555555555544443 234455555 6666666666665542 2 111 1134555566
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCC-----Chh-HHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQA-----KTE-HYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
+.+.|++++|.++|++.... .... +.. .+-..+-++...|+...|.+.+++.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777777777777766552 1111 111 1222223444566777777666663
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=50.50 Aligned_cols=87 Identities=18% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHc
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR---KGAYKVMLSNTYAE 521 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 521 (554)
..++-..|+.++|+.++++... ......+..+.+++...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344455555555555554321 111234445666666677777777777777666665 44555555566667
Q ss_pred cCChhHHHHHHHHHh
Q 045069 522 DGRWDDVMKLRDDIV 536 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~ 536 (554)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777776665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00085 Score=59.61 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGA 480 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 480 (554)
.|...+....+.|++++|...|+.+.+. .+-+ ...+..+...|...|++++|...|+.+.. +..+..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3555444445567777777777777664 2211 23455566666666666666666655431 122334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
++.++...|+.+.|..+|+++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44555555666666666666666665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0026 Score=57.89 Aligned_cols=154 Identities=11% Similarity=0.013 Sum_probs=93.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhcCCchHHHHHHHHHhHHHhCCCCChhHH------------
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA--CCHGGLVNDGREIFTRMTEEYGIQAKTEHY------------ 446 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------ 446 (554)
++.-.|++++|...--...+. .++. .+..++++ +.-.++.+.|...|++... +.|+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 455567777776665555542 2221 22223332 3345666667666666543 34442211
Q ss_pred -HHHHHHHHhcCChHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 447 -IYMVKLLGLAGNLEEAYSFIWSLP------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 447 -~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
..-..-..+.|++.+|.+.+.+.. ..++...|.....+..+.|+.++|+.--+++.+++|.-...+..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112223456777777777777753 1344445555556666778888888888888888777777777777777
Q ss_pred HccCChhHHHHHHHHHhhcCC
Q 045069 520 AEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...++|++|.+.+++..+..-
T Consensus 332 l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 788888888888887766443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=41.48 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHccCChhHHHH
Q 045069 498 AHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 498 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 530 (554)
|+++++.+|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999963
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00033 Score=48.04 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG-NSDLAEIVAHQLFENDP 506 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 506 (554)
+..|..+...+...|++++|+..|++.. .+.++..+..+..++...| ++++|++.++++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566667777777777777777777653 3556677777777888888 68888888888888776
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=59.45 Aligned_cols=129 Identities=11% Similarity=0.060 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL-AGNLEEAYSFIWSLP--KPVDPAVSGALLSC 484 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 484 (554)
.+|..++...-+.+..+.|..+|++..+ .-..+..+|...+..-.+ .++.+.|.++|+... .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888888999999999999975 334456667666666444 566666999999975 36788899999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+...|+.+.|..+|++++..-|.+. .+|...++.-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876655 68888888889999999999999998875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00062 Score=63.54 Aligned_cols=66 Identities=9% Similarity=-0.119 Sum_probs=37.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh---HHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY---KVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.++..+..+..+|...|++++|+..|+++++.+|++... ++.++.+|...|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555532 555555555555555555555555553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.098 Score=48.67 Aligned_cols=449 Identities=11% Similarity=0.015 Sum_probs=224.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhHHcC
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSV---FLWNSIIRAYALAHRFNDAKSLFKNLLRTQ 99 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 99 (554)
.++.+.+..+ +.|..+|-.|+.-|...|..++.+++++++..|-+ .+|..-+++=...+++.....+|.+.....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3555555443 66888999999999999999999999999987754 467777877777889999999999888764
Q ss_pred CCCCcccHHHHHHHhhcCCCh------hhHHHHHHHHHH-hcCCCCHh-HHHHH---HHHHHcCC------CHhHHHHhh
Q 045069 100 LKPDNFTYACITRACSENSDL------PGLRFVHGGAIV-SGLGRDSI-TSSAL---VTAYSKLS------LIDEAIKVF 162 (554)
Q Consensus 100 ~~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~~-~~~~l---i~~~~~~g------~~~~A~~~~ 162 (554)
. +...|..-+.-..+.+.. ...-+.++-... .+++|-.. .|+.. +...-..| ++|...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4 455555555444333211 112233333322 23444322 23322 22222223 344444555
Q ss_pred cccCC-C---------CcchHHHHHHHHHhC-------CChhhHHHHHHHHHH--CCCCC----ChhhHHHHHHHcccCC
Q 045069 163 DGVSD-P---------DLVLCNSMISGFAHC-------GFWDKSLQLFDWMLR--LGKTP----DEYTLVGLISGLWEPS 219 (554)
Q Consensus 163 ~~~~~-~---------~~~~~~~li~~~~~~-------~~~~~a~~~~~~m~~--~~~~p----~~~~~~~ll~~~~~~~ 219 (554)
.++.. | |-..|..=+...... .-+-.|.+.++++.. .|... +..|++.+-+ ..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r----~s 260 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR----TS 260 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----cc
Confidence 55543 1 111111111111100 112234444444422 22221 1112221110 00
Q ss_pred ccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045069 220 LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRK 296 (554)
Q Consensus 220 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 296 (554)
...-....+.-.+.++.....+...-|. -+++.. ..-....|--.-.-+...++-++|+.....
T Consensus 261 -~S~WlNwIkwE~en~l~L~~~~~~qRi~------------y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r 327 (660)
T COG5107 261 -DSNWLNWIKWEMENGLKLGGRPHEQRIH------------YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER 327 (660)
T ss_pred -cchhhhHhhHhhcCCcccCCCcHHHHHH------------HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 0000001111112222211111111110 011111 011222333223334556677777766654
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc---------cCChHHHHHHHhcc
Q 045069 297 LNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK---------CGYLGLGIQVFETM 367 (554)
Q Consensus 297 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 367 (554)
-.. ..|. .-..+-..+.-.++.+.+...|+...+. |.+-|.+ .|+++.-.+++-.-
T Consensus 328 g~~--~sps--L~~~lse~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 328 GIE--MSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred ccc--CCCc--hheeHHHHHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHH
Confidence 321 1222 1111222233333333333333332211 1111110 12221111111111
Q ss_pred CCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHH
Q 045069 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHY 446 (554)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 446 (554)
...-...|...+..-.+....+.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+--... ++.+..-.
T Consensus 393 ~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~ 469 (660)
T COG5107 393 INKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYK 469 (660)
T ss_pred HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHH
Confidence 11233456667777777777888888888888887 5566677888887554 57778888888876553 33333333
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+..+..+.+.++-+.|..+|+.... ..-...|..++.--...|+...+..+-+++.+..|....
T Consensus 470 ~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 470 EKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 5566677788888888888885432 223567777888778888888888888888888776543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.029 Score=54.36 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=35.0
Q ss_pred cHHHHHHHhhcCCChhh--HHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcc
Q 045069 106 TYACITRACSENSDLPG--LRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 106 ~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
.++..-.+|.+.++..- ...-++++.+.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 34455555655555433 3334566777787677654 34556777889888888764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0074 Score=47.96 Aligned_cols=93 Identities=11% Similarity=-0.053 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (554)
.-.+...+...|++++|.++|+-+..- -+-+..-|-.|.-++...|++++|+..+.... .+.++..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 334444556778888888888777651 23345556667777777788888888877742 46677777788888888
Q ss_pred cCChHHHHHHHHHHHhc
Q 045069 488 YGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~ 504 (554)
.|+.+.|...|+.++..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888877766
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.031 Score=45.28 Aligned_cols=124 Identities=12% Similarity=-0.028 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CCcchHHH
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RNIITYNS 377 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 377 (554)
.|+...-..+..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+ ....+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444445555555555555555555554444444555555555555555555555555554442 12223333
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 428 (554)
+...+...|++.+|..-|+.... ..|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 44445555555555555555555 34444433333333444444444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00031 Score=49.65 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc----C---CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFEN----D---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++..+...+...|++++|+..++++++. . |....++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566667777777777777777777755 1 22356778888999999999999999988764
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00095 Score=55.51 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=72.9
Q ss_pred HHHhccC--CCCCcchHHHHHHHHHhc-----CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcC-------------
Q 045069 58 RILFDKT--PQRSVFLWNSIIRAYALA-----HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSEN------------- 117 (554)
Q Consensus 58 ~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 117 (554)
...|+.. ...+-.+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345667788888877644 56666777888888888888888999888886543
Q ss_pred ---CChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 118 ---SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 118 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
.+-+-|.+++++|...|+-||.+++..|+..+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346678999999999999999999999998876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.19 Score=50.04 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=57.3
Q ss_pred HHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 045069 345 SALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424 (554)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 424 (554)
+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-.++-+.+. .+.-|..++.+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3334445555666666666666666666666666666666666665444433221 1334555556666666666
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFI 466 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 466 (554)
+|.+++-+... . .-...+|.+.|++.+|.++-
T Consensus 762 EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 762 EAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHHH
Confidence 66665554422 1 13445556666666665544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.008 Score=51.34 Aligned_cols=136 Identities=14% Similarity=0.070 Sum_probs=82.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChh-----HHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTE-----HYIY 448 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~ 448 (554)
.-+.++..+.-.|.+.-....+.+.++...+.++.-...+.+.-.+.||.+.|...|++..+. .-..+.. +...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 344555666667777777777777777554455566667777777778888887777766553 2222222 2222
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
....|.-++++.+|...+.++.. +.++...+.-.-+..-.|+...|+...+.+++..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 33344555667777777766543 334445555555555667777777777777777665443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.039 Score=51.20 Aligned_cols=165 Identities=21% Similarity=0.145 Sum_probs=103.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCC-Cc------chHHHHHHHHHc---CCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSER-NI------ITYNSVILGLGL---HGFTYQAFEFFRDIIEKGLNPDESTFSA 412 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 412 (554)
+...++-+|-...+++..+++.+.+... +. ..-....-++.+ .|+.++|+.++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334555688888888888888887752 11 111233445556 7889999999988776667788888887
Q ss_pred HHHHHhc---------CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH----HHHHHH---Hh-C------
Q 045069 413 LLCACCH---------GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE----EAYSFI---WS-L------ 469 (554)
Q Consensus 413 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------ 469 (554)
+.+.|-. ....++|...|.+. +.+.|+...=-.++..+...|... +..++- .. +
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7766532 23467788888776 345565333222233333333221 222222 11 1
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 470 PKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 470 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
....+-..+.+++.++.-.|+.++|.+.++++.+..|+.-.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 12344555677888899999999999999999999876554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0088 Score=45.74 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=65.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC---ChhHHHHHHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCHGGLVNDGREIFTRMTEEYGIQA---KTEHYIYMVKL 452 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~ 452 (554)
+..++-..|+.++|+.+|++..+.|..... ..+..+...+...|++++|..++++.... .+. +......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 455677789999999999999988876653 35677788888899999999999988774 222 23333444556
Q ss_pred HHhcCChHHHHHHHHh
Q 045069 453 LGLAGNLEEAYSFIWS 468 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~ 468 (554)
+...|+.++|++.+-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 7788999998887744
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00052 Score=41.85 Aligned_cols=42 Identities=24% Similarity=0.161 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
.++..+...|...|++++|++.++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999998888764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.16 Score=47.44 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=22.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNM 299 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 299 (554)
-..++..++...++.++..+|.+.+.-+..
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 445677778888888888888887776543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0047 Score=54.97 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-PVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSN 517 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 517 (554)
|..-...+.+.|++++|...|+.... .|+ +..+..++.++...|++++|...|+.+++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333455677777777666532 222 3456666667777777777777777777665554 344555566
Q ss_pred HHHccCChhHHHHHHHHHhhcCC
Q 045069 518 TYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 518 ~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
++...|++++|.++++++++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 66677777777777777766543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=46.19 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=53.0
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
..|.+.+++++|.++++.+. .|.++..+.....++...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 56778888888888888864 366777888888889999999999999999999999877765544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.16 Score=46.51 Aligned_cols=273 Identities=13% Similarity=0.025 Sum_probs=125.3
Q ss_pred cCChHHHHHHHHHhHHcCCCCCcccHHHHHHHh--hcCCChhhHHHHHHHHHHhcCCCCHhHHH----HHHHHHHcCCCH
Q 045069 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC--SENSDLPGLRFVHGGAIVSGLGRDSITSS----ALVTAYSKLSLI 155 (554)
Q Consensus 82 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~ 155 (554)
.|+-..|.++-.+-... +.-|......|+.+- .-.|+.+.|.+-|+.|.. |+++.. .|.-.--+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 35555555554443322 333444444444432 244666666666666653 222211 111112345555
Q ss_pred hHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCChh--hHHHHHHHccc---CCccchhhH
Q 045069 156 DEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG-KTPDEY--TLVGLISGLWE---PSLLSVGQG 226 (554)
Q Consensus 156 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~---~~~~~~a~~ 226 (554)
+.|...-++.-. .-...+...+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-+. ..+...|..
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 555555444332 223455556666666666666666665543321 223321 11122221111 112222222
Q ss_pred HHHHHHHhcCCCchhHH-HHHHHHHHhcCChhhHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC
Q 045069 227 IHGFCLKSSFDSYDYVS-SVLVSMYARCNCMNSAYHVFNSL--FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ-GK 302 (554)
Q Consensus 227 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~ 302 (554)
.-... ..+.||..-- -.-..++.+.|++.++-.+++.+ .+|.+.++. +..+.+.|+. ++.-+++..+. .+
T Consensus 251 ~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhc
Confidence 22222 2223332211 12234566777777777777766 223333332 2223444442 22222222211 23
Q ss_pred CCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc-cCChHHHHHHHhccC
Q 045069 303 KAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK-CGYLGLGIQVFETMS 368 (554)
Q Consensus 303 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 368 (554)
+|| ......+..+....|++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 443 345555666666777776666555544433 5666666666665544 377777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.02 Score=49.14 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCch---hHHHHHHHHHccCChhHHHH
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGA---YKVMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 530 (554)
++..|.+.|.+..|..-++.+++..|+++. ....++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 556688999999999999999999998865 45667788999999885543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.27 Score=48.54 Aligned_cols=207 Identities=13% Similarity=0.069 Sum_probs=109.3
Q ss_pred CCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-CCcchHHHH----------HHHHHhcCChHHHHHHHHHhHHcCCCC
Q 045069 34 LLRDPFYATKLVRLYALNNVLPSARILFDKTPQ-RSVFLWNSI----------IRAYALAHRFNDAKSLFKNLLRTQLKP 102 (554)
Q Consensus 34 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l----------l~~~~~~~~~~~a~~~~~~m~~~~~~p 102 (554)
-.|.|..|..|.....+.-.++-|+..|-+... +.+..-..+ ...-+--|.+++|.++|-.|-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 368889999988888888888888888766441 222111111 011122477888888887776653
Q ss_pred CcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCC----CHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHH
Q 045069 103 DNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR----DSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMIS 178 (554)
Q Consensus 103 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 178 (554)
..+....+.|++-...++++. -|-.. -...++.+...++....|++|.+.|..-.. -...+.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 234455566666666555432 11111 123566666666666677777776654321 112344
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhh
Q 045069 179 GFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258 (554)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (554)
++.+..++++-..+-..+ +-|....-.+...+.+.|.-++|.+.+- +.+.+ .+-+..+...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L---r~s~p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL---RRSLP------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH---hccCc------HHHHHHHHHHHHHHH
Confidence 444444444443333332 2333444445555555555555544332 22211 233445555566666
Q ss_pred HHHHHhhcCCCCh
Q 045069 259 AYHVFNSLFHPDL 271 (554)
Q Consensus 259 a~~~~~~~~~~~~ 271 (554)
|.++-++..-|.+
T Consensus 897 avelaq~~~l~qv 909 (1189)
T KOG2041|consen 897 AVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHhccchhH
Confidence 6666655544433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0056 Score=51.09 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=72.5
Q ss_pred HHHhhc--CCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-------------
Q 045069 261 HVFNSL--FHPDLVTWSALITGYSQ-----QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA------------- 320 (554)
Q Consensus 261 ~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g------------- 320 (554)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 44677777777777754 4667777788888999999999999999998887532
Q ss_pred ---CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC
Q 045069 321 ---NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY 356 (554)
Q Consensus 321 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (554)
+-+-|..++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 245677888888888888888888888888877553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.21 Score=44.21 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 274 WSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL--IASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 274 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
+-.....+...|++++|...|+++...-..+.... ...+..++.+.++++.|...+++..+..
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33344555667777777777777766432221111 1234455566666666666666666553
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.43 Score=47.60 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
+.+--+.-+...|+..+|.++-++.+ -||...|..-+.+++..++|++-+++-+..+ +|--|.-+..+|.+.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQ 757 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhc
Confidence 44455556677788888888777663 3788888888889999999998888776655 356677788889999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
|+.++|..++.+.-.. .....+|.+.|++.+|.++--+
T Consensus 758 ~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 9999998887664221 1566788888998888876443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0041 Score=56.55 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhH---HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChh
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMT---EEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--------KPVDPA 476 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~ 476 (554)
.|..|...|.-.|+++.|+...+.-. +.+|-+. ....+..+..++.-.|+++.|.+.++... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555555666776665544321 1122222 23455566666666777777777665521 122333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFEN------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.-.+|...|--..++++|+.+..+=+.+ .-.....+..|+.++...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4445566666666677777666654433 123345666677777777777777776665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.04 Score=50.52 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=8.4
Q ss_pred cCChHHHHHHHhccCC
Q 045069 354 CGYLGLGIQVFETMSE 369 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~ 369 (554)
.++.+.|...|++...
T Consensus 216 ~~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR 231 (486)
T ss_pred ccchHHHHHHHhhhhc
Confidence 4455555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.036 Score=47.56 Aligned_cols=138 Identities=10% Similarity=0.069 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHH-----H
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSS-----A 346 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 346 (554)
.+.+.++..+.-.|.+.-....+++.++...+.++.....+.+.-...|+.+.|...|+...+..-..+..+.+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 33455666677778888888888888887777778888888888888899999998888776543333333333 3
Q ss_pred HHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFS 411 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 411 (554)
....|.-++++..|...+.++.. .++...|.-.-+..-.|+..+|++.++.|.+ ..|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 33445566778888888877664 3444455555555557788888888888887 455554433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.049 Score=41.33 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=90.3
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+-+.+.|-. -...++..|...|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcch--
Confidence 34568888888888888763 345567777766666666677777777765432222211 123445555554443
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.......+.....+|+-+.-..++..+.+....+|.+...++.+|.+.|+..++.+++.++-+.|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344556677889999999999999998877788999999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.02 Score=53.98 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhcC---------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 045069 387 FTYQAFEFFRDIIE-KGLNPDES-TFSALLCACCHG---------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL 455 (554)
Q Consensus 387 ~~~~a~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (554)
..+.|+.+|.+... ..+.|+.. .|..+..++... .+..+|.++-++..+ --+.|+.....+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35667888888872 22666654 566666654322 234455666666655 234456666667776677
Q ss_pred cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH--HHHHHHccCChhHHHHH
Q 045069 456 AGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVM--LSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~ 531 (554)
.|+.+.|..+|++.. .|....+|......+.-.|+.++|.+.++++++..|.....-.. .++.|+.. ..++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 777888888887754 35566677777777777888888888888888887765543333 33345444 45666666
Q ss_pred HHH
Q 045069 532 RDD 534 (554)
Q Consensus 532 ~~~ 534 (554)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.061 Score=47.56 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhCC--CCCChhhH
Q 045069 404 NPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA---GNLEEAYSFIWSLP--KPVDPAVS 478 (554)
Q Consensus 404 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~--~~~~~~~~ 478 (554)
+-|...|..|...|...|+++.|...|.+..+- .++++..+..+..++... ....++..+++++. .+.+....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 345678999999999999999999999999873 556677777788776543 25668889999874 46788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
..|...+...|++.+|...++.+++..|.+..-..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 88999999999999999999999999876654333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.022 Score=52.26 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
.++..+.-++.+.+++.+|++..+... .+++...+..-..++...|+++.|...|+++++..|.|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356778888999999999999998864 478888888889999999999999999999999999999999999877666
Q ss_pred cCChhH-HHHHHHHHhhc
Q 045069 522 DGRWDD-VMKLRDDIVDN 538 (554)
Q Consensus 522 ~g~~~~-A~~~~~~~~~~ 538 (554)
..++.+ ..++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 555444 47888888753
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.091 Score=51.59 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=104.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCChh
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDE-----STFSALLCACCH----GGLVNDGREIFTRMTEEYGIQAKTE 444 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 444 (554)
+..++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.|.++++.+.++ . |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y-P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y-PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C-CCcH
Confidence 3344445555566666666666654422 11111 123344433333 45678888999998874 3 4544
Q ss_pred HH-HHHHHHHHhcCChHHHHHHHHhCCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-hHHHHH
Q 045069 445 HY-IYMVKLLGLAGNLEEAYSFIWSLPK------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-YKVMLS 516 (554)
Q Consensus 445 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~ 516 (554)
.| -.-.+.+...|+.++|++.+++... +.....+..++.++....++++|...+.++.+...-+.. +++..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44 3445566778999999999987532 233445667778888999999999999999998654444 444556
Q ss_pred HHHHccCCh-------hHHHHHHHHHhh
Q 045069 517 NTYAEDGRW-------DDVMKLRDDIVD 537 (554)
Q Consensus 517 ~~~~~~g~~-------~~A~~~~~~~~~ 537 (554)
-++...|+. ++|.++++++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 677888988 899999988765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.005 Score=56.01 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHh-CC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWS-LP-------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN------DPRKG 509 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~ 509 (554)
..|..|...|.-.|+++.|+..-+. +. .......+..+..++.-.|+++.|.+.|+....+ .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3456666777778999999876543 11 1223456777888999999999999999987655 23345
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
...+.|+..|.-..++++|+.+.++=+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999987743
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.15 Score=45.00 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=75.8
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH---HHHHHHhcCChH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA---LLSCCHIYGNSD 492 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 492 (554)
.....|++.+|..+|+..... .+-+....-.++++|...|+.+.|..++..++.......+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677777787777777663 334456666777778888888888888877764333333322 222333333333
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+... +++-...+|+|...-..++..+...|+.++|.+.+-.+++.+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3322 233334578888888888888888888888887777776653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.045 Score=42.77 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=59.4
Q ss_pred HHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch---hHHHHHHHHHcc
Q 045069 451 KLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA---YKVMLSNTYAED 522 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 522 (554)
....+.|++++|.+.|+.+.. +-....-..++.++.+.++++.|...+++.++++|.++. ++...+-++.+.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 334466777777777777642 223445566778888888888888888888888876653 444444444444
Q ss_pred CC---------------hhHHHHHHHHHhhcC
Q 045069 523 GR---------------WDDVMKLRDDIVDNG 539 (554)
Q Consensus 523 g~---------------~~~A~~~~~~~~~~~ 539 (554)
.. ..+|..-|+++++.-
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 44 667777777777653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.027 Score=43.56 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG 454 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (554)
...|+..+..+++.+|+..+++..|.++.+...+.++++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788888899999999999999999999999888888888888888777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.38 Score=41.36 Aligned_cols=176 Identities=14% Similarity=0.009 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGK--KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
.....+...|++++|...|+++...-. +--......+..++.+.|+++.|...++...+.-......-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 334455666777777777777665421 112223444555666666666666666666554322111111111111111
Q ss_pred cCChHHHHHHHhccCCCCc-------chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 045069 354 CGYLGLGIQVFETMSERNI-------ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 426 (554)
........ ....|. ..+..++.-|-...-..+|...+..+.+. + - ..-..+..-|.+.|.+..|
T Consensus 90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-l--a-~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-L--A-EHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-H--H-HHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-H--H-HHHHHHHHHHHHcccHHHH
Confidence 00000000 000110 12333444444444444554444443331 0 0 0111244556677777777
Q ss_pred HHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHH
Q 045069 427 REIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 462 (554)
..-++.+.+. .+-+ ......++.+|.+.|..+.|
T Consensus 161 ~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777664 2222 23344555666666665533
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0094 Score=54.58 Aligned_cols=68 Identities=13% Similarity=0.018 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..++..+..++.+.+++..|++...+.++.+|+|.-.++.-+.+|...|+++.|+..|+++++..+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 34677788899999999999999999999999999999999999999999999999999999876544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=47.86 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh-----hcCCccCC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV-----DNGLRKEA 544 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 544 (554)
....++..+...|+++.|...+++++..+|-+...+..++.+|...|+..+|.++|+++. +.|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455567778889999999999999999999999999999999999999999999999875 34665554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.029 Score=48.85 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC----C-CCChhhHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEAYSFIWSLP----K-PVDPAVSGA 480 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~ 480 (554)
.|+.-+. +.+.|++..|...|....++ .+-+ ...+-.|.+++...|++++|..+|..+. . +.-+..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4554443 34556677777777777763 3332 3344456666666666666666655442 1 234455556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
|..+....|+.++|...|+++.+..|..+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666666677777777777777776665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.11 Score=49.16 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=76.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH--HhcCChHH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL--GLAGNLEE 461 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 461 (554)
+..+.+.-++.-++..+ +.||..+.-.++ +-.......++++++++..+. +-. .+.+.. ...|..-+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE~-------~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GEA-------SLGKSQFLQHHGHFWE 248 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HHH-------hhchhhhhhcccchhh
Confidence 44455666666666666 667665433222 223455567788888777653 110 000000 01111111
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR--KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.+.+-...+-..+-..+..++.+.|+.++|++.++++.+..|. +..+...|++++...+++.++..++.+--+..
T Consensus 249 ---~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 249 ---AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred ---hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111011222333455666667777777777777777766554 34566677777777777777777777765443
Q ss_pred Ccc
Q 045069 540 LRK 542 (554)
Q Consensus 540 ~~~ 542 (554)
..+
T Consensus 326 lpk 328 (539)
T PF04184_consen 326 LPK 328 (539)
T ss_pred CCc
Confidence 333
|
The molecular function of this protein is uncertain. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.5 Score=44.93 Aligned_cols=260 Identities=13% Similarity=0.039 Sum_probs=132.2
Q ss_pred HHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcc
Q 045069 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVW 323 (554)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 323 (554)
...+..+.+.+++....+++.. .+.+...-.....+....|+.++|....+.+=..| ...+.....++..+.+.|.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCC
Confidence 3344445556666666663322 23444445556666777777766666666554444 223445566666666555443
Q ss_pred hhHH--HHHHHHHhcC-----------Cch-HHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHH--cCCC
Q 045069 324 PGAV--IHGYVIQHGF-----------ELS-VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLG--LHGF 387 (554)
Q Consensus 324 ~a~~--~~~~~~~~~~-----------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 387 (554)
.... -+..+...|- .++ ......++..+. +...+...+.... ++...-..++.++. ...+
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhC
Confidence 3221 1111122111 111 111222222222 2333333333221 22211111222222 2455
Q ss_pred hHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 045069 388 TYQAFEFFRDIIEKG-LNPDES--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
.+.|...+....... +.+... ....+.......+...+|...++..... ..+......-++...+.++++.+..
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHH
Confidence 688888888775433 333322 3344443333433356677777665432 2344555556666668899999888
Q ss_pred HHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 465 FIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 465 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
.+..|.. .....-..-+.+++...|+.++|...|+++.. + ..+|..|+
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 8888863 22334445566776778999999999998743 2 34665653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.1 Score=46.52 Aligned_cols=158 Identities=12% Similarity=0.027 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHH----HHHHHHhcCChH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIY----MVKLLGLAGNLE 460 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~ 460 (554)
.|+..+|...++++.+. .+.|..++...=.+|...|+...-...++++.. ...++...|.. +.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444555555555543 333344444444555555555555555555544 22333333322 222334455555
Q ss_pred HHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----chhHHHHHHHHHccCChhHHHHHHHH
Q 045069 461 EAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK----GAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 461 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
+|.+.-++... +.|.-...++...+...|+.+++.++..+-...-... ..-|-..+-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555555432 3333333444444455555555555544432221100 01111222244445556666666555
Q ss_pred HhhcCCccCCC
Q 045069 535 IVDNGLRKEAG 545 (554)
Q Consensus 535 ~~~~~~~~~~~ 545 (554)
-+-..+.++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 54444444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0054 Score=43.19 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
.++..+..++...|++++|++.++++.+
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455566666666666666666666654
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.035 Score=41.96 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=36.0
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCc---hhHHHHHHHHHccCChhH
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN-DPRKG---AYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~---~~~~~l~~~~~~~g~~~~ 527 (554)
...|+.++|++.|.+.. .+..+..|+.-..++.-+|+.++|+.-++++++. .|... ..|..-+.+|...|+-+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 33444444444444422 1334444444444444444444444444444444 22211 122333334444555555
Q ss_pred HHHHHHHHhh
Q 045069 528 VMKLRDDIVD 537 (554)
Q Consensus 528 A~~~~~~~~~ 537 (554)
|..-|+..-+
T Consensus 134 AR~DFe~AA~ 143 (175)
T KOG4555|consen 134 ARADFEAAAQ 143 (175)
T ss_pred HHHhHHHHHH
Confidence 5554444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.031 Score=48.46 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=84.8
Q ss_pred chhHHHHhccCC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCC--------
Q 045069 54 LPSARILFDKTP--QRSVFLWNSIIRAYALA-----HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENS-------- 118 (554)
Q Consensus 54 ~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-------- 118 (554)
+-..++.|...+ +.|-.+|-+.+..+... +..+=....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334455666666 56777888888877544 556667778899999999999999999999876543
Q ss_pred --------ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH-hHHHHhhcccC
Q 045069 119 --------DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI-DEAIKVFDGVS 166 (554)
Q Consensus 119 --------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 166 (554)
+-+-+..++++|...|+.||.++-..|+.++.+.+.. .+..++.-.|+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345788999999999999999999999999887753 33444444444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.26 Score=39.62 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=72.8
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL--PKPVDPAVSGALLSCCHIYGN 490 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 490 (554)
...-+...|++++|..+|.-+..- -+-+..-+..|..++...+++++|+..+... ....|+........++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 334456789999999999988762 2344566778888888999999999998774 335677777788899999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 045069 491 SDLAEIVAHQLFENDPR 507 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~ 507 (554)
.+.|...|+.+++ .|.
T Consensus 121 ~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHHh-Ccc
Confidence 9999999999888 344
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.24 Score=46.94 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=86.0
Q ss_pred ChHHHHHHHhccC---CCC---cchHHHHHHHHHc---------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 045069 356 YLGLGIQVFETMS---ERN---IITYNSVILGLGL---------HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG 420 (554)
Q Consensus 356 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 420 (554)
..+.|..+|.+.. ..| ...|..+..++.. .....+|.++.++..+.+ .-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567777888776 333 3345555444332 123456677777777743 33566666677766777
Q ss_pred CchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh-CCCCCChh---hHHHHHHHHHhcCChHHHH
Q 045069 421 GLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWS-LPKPVDPA---VSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 421 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~~~A~ 495 (554)
++++.|..+|++... +.|+ ..+|........-+|+.++|.+.+++ +...|... .....+..|+. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 778888888888865 5565 55566666666778889999888888 44333322 22222333443 3456666
Q ss_pred HHHHHHH
Q 045069 496 IVAHQLF 502 (554)
Q Consensus 496 ~~~~~~~ 502 (554)
.+|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 6665433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.48 Score=44.22 Aligned_cols=164 Identities=7% Similarity=-0.047 Sum_probs=105.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---CCchHHHHHHHHHhHHHhCCCCChhHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPDESTFSALLCACCH---GGLVNDGREIFTRMTEEYGIQAKTEHYIY 448 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 448 (554)
.-.++-+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+... .-.+++.++..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3355667999999999999999998741 11112222334456667 89999999999996664 77888999999
Q ss_pred HHHHHHh---------cCChHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChH----HHHHHH----HHHHhc----CC
Q 045069 449 MVKLLGL---------AGNLEEAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSD----LAEIVA----HQLFEN----DP 506 (554)
Q Consensus 449 l~~~~~~---------~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~----~A~~~~----~~~~~~----~p 506 (554)
+++.|.. ....++|...|.+.- ..++...=-.++..+...|... +..++- ....+. .-
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 9888743 224678888887742 2333222222222233333211 222222 111111 23
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 507 RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 507 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.+-+.+..++++..-.|++++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 455677788899999999999999999998763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.48 Score=41.97 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=100.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
......|++.+|...|+...... .-+...-..+..++...|+.+.|..++..+... --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34567788888888888887742 223345667788888889998888888887542 1111122222334555555555
Q ss_pred HHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 460 EEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 460 ~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.+...+-.+... +.|...-..+...+...|+.+.|.+.+=.+++.+ -.+......+..++.-.|.-+.+...++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 555555555433 4477777788888888999999988888777774 4667777888888887775554444333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.7 Score=39.61 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCchhHHHHHHHHHccCChhHHHHHH
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN----DPRKGAYKVMLSNTYAEDGRWDDVMKLR 532 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 532 (554)
+...+-.+.-..|+..|+..++..-+. .|++......|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 334444445555666666666654443 344555555554333 345555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.066 Score=43.23 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHH----HhCCCCChhHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTE----EYGIQAKTEHY 446 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 446 (554)
...++..+...|++++|..+.+.+... .| +...|..++.+|...|+...|.++|+++.+ .+|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 334555666777777777777777773 34 445777778888888888888777776643 25777776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.06 Score=48.51 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 281 YSQQGDYGKALYYFRKLNMQG--KKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
+....+.++|+..+.+-...- ..-.-.+|..+..+.++.|.+++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 344566777777776654321 111223455555666666665555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.042 Score=47.86 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLS 516 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 516 (554)
.|+.-+. +.+.|++.+|...|..-.. .-.+..+..|..++...|+++.|..+|..+.+..|++ +..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 4467889999998877531 3345566679999999999999999999999997655 56788899
Q ss_pred HHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 517 NTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+..+.|+.++|...|+++.+.=+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999998865443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.088 Score=46.97 Aligned_cols=116 Identities=11% Similarity=-0.011 Sum_probs=96.8
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhH----HHHHHHHHhcCCh
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVS----GALLSCCHIYGNS 491 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~~l~~~~~~~~~~ 491 (554)
...|+..+|-..++++.+ ..|.|...+...-+++.-.|+.+.-...++++.. .++.+.| ..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 356888888889999988 5888888888888899999999888888888642 3444333 3455566788999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
++|++..+++.+.+|.+......++.++...|+++++.+.+.+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999998764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.3 Score=43.44 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=37.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
-++..+....+.+++..+.+..... ++..|..++..+++.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3555666777788888887777633 788888888888887765555444444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.9 Score=42.25 Aligned_cols=408 Identities=10% Similarity=0.012 Sum_probs=207.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc-HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHH
Q 045069 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT-YACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALV 146 (554)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 146 (554)
+...|..+|..--...+.+.+..++..++.. .|.... |......=.+.|..+.+.++|+..+. |++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4456777776655555566777777777754 454442 33334444577888888888888765 3556666666655
Q ss_pred HHHH-cCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHc---c
Q 045069 147 TAYS-KLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGL---W 216 (554)
Q Consensus 147 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~ 216 (554)
.-+. ..|+.+...+.|+.... .....|...|..-...+++.....+|++..+... ..|+.....+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHH
Confidence 5444 35677777777776654 4555677788777788888888888888876321 1111111111 1
Q ss_pred cCC------ccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcC-ChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 045069 217 EPS------LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN-CMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGK 289 (554)
Q Consensus 217 ~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 289 (554)
+.. ..+.+.++-....... .-...+ ..+......+....|. +..++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~ 249 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPS--------------KSLTE 249 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCcc--------------chhhH
Confidence 110 1111111111000000 000000 0011111111111110 00111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh-------cCCchHHHHHHHHHHHHccCChHHHHH
Q 045069 290 ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH-------GFELSVMVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (554)
+...+.+.... -. ..+...-........++.-.+. -..+...+|...+.--.+.|+.+.+.-
T Consensus 250 ~~~~l~~~~~~----~~-------~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVSI----HE-------KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHHH----HH-------HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 11111100000 00 0000000000001111111110 012345666777777777788888877
Q ss_pred HHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 363 VFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 363 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
+|+...-|- ...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-+...|+++.|..+++.+.+. .
T Consensus 319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~ 396 (577)
T KOG1258|consen 319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y 396 (577)
T ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C
Confidence 777765432 22344444444444778877777776665433222222211122234567889999999888874 4
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCChhhHHHHHHH-----HHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 440 QAK-TEHYIYMVKLLGLAGNLEEAY---SFIWSLP-KPVDPAVSGALLSC-----CHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 440 ~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
|+ ...-..-+....+.|..+.+. +++.... ...+..+...+..- +.-.++.+.|..++.++.+..|++.
T Consensus 397 -pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 397 -PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred -CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 44 333334455566778877777 4444432 22333333333222 3345788899999999999999998
Q ss_pred hhHHHHHHHHHccC
Q 045069 510 AYKVMLSNTYAEDG 523 (554)
Q Consensus 510 ~~~~~l~~~~~~~g 523 (554)
..+..+.......+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 476 VLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888887776655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.1 Score=39.32 Aligned_cols=180 Identities=15% Similarity=0.078 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHh-cCCchHHHHHHHHHHHHccCChHHHHH
Q 045069 285 GDYGKALYYFRKLNMQGKKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQH-GFELSVMVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (554)
+....+...+.......... ....+......+...+....+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444443332111 2344444445555555555555555444432 223333344444444444455555555
Q ss_pred HHhccCC--CCc-chHHHHHH-HHHcCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 363 VFETMSE--RNI-ITYNSVIL-GLGLHGFTYQAFEFFRDIIEKGLNP----DESTFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 363 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 5544432 111 11222222 34455555555555555433 222 11122222222334444555555554444
Q ss_pred HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 435 EEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 435 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
.. .+. ....+..+...+...++++.|...+..
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 31 222 233444444444444444444444444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.3 Score=38.63 Aligned_cols=168 Identities=15% Similarity=0.077 Sum_probs=93.5
Q ss_pred HccCChHHHHHHHhccCCCC------cchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc---C-
Q 045069 352 SKCGYLGLGIQVFETMSERN------IITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCH---G- 420 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~---~- 420 (554)
.+.|++++|.+.|+.+.+.. ..+--.++.++-+.++++.|+..+++....- -.|| ..|...|.+++. .
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 45578888888888776421 1234445666777888888888888877732 2222 234444444332 1
Q ss_pred ---Cch---HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 045069 421 ---GLV---NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 421 ---~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
.|. ..|..-|++++++ .|-+..+ ..|..-+..+.. .-...-..+..-|.+.|.+..|
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya--------------~dA~~~i~~~~d-~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR--YPNSRYA--------------PDAKARIVKLND-ALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH--CCCCcch--------------hhHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHH
Confidence 222 2344444444443 2222111 111111100000 0000112355668888888889
Q ss_pred HHHHHHHHhcCCCCch---hHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 495 EIVAHQLFENDPRKGA---YKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..-++++++..|+... .+..+.++|...|..++|.+.-+-+..
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999888766554 445566788889999988887655543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.5 Score=44.72 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=60.2
Q ss_pred HhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHH
Q 045069 49 ALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128 (554)
Q Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 128 (554)
.+.|++++|...+-+-..--- =..++.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.++..++.+
T Consensus 379 y~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 344555555555443221000 012344444555555555555555555543 44444555666666666555555443
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHH
Q 045069 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 129 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (554)
... .|.. ..-....+..+.+.+-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 456 ~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 456 KCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred cCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 322 1110 00112233344444444444443332221 12222222 22346666666666654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.085 Score=49.78 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-h---hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVD-P---AVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...++.+..+|.+.|++++|+..|++.. ..|+ . .+|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444444444444444444444421 1222 1 12444555555555555555555555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.034 Score=31.33 Aligned_cols=31 Identities=23% Similarity=0.047 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.+..+..++...|++++|++.++++++.+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444555555556666666666666555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.19 Score=38.87 Aligned_cols=50 Identities=4% Similarity=0.099 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhccCCcchhHHHHHHHHH-hcCCchHHHHHHHHHHH
Q 045069 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ-HGFELSVMVSSALVDMY 351 (554)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 351 (554)
..|+..+..+++.+|+..|++..|.++.+...+ -+++.+..+|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666666666666666665543 24555555555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.034 Score=31.40 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+|..++.++...|++++|+..++++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.37 E-value=4.8 Score=43.05 Aligned_cols=153 Identities=13% Similarity=0.159 Sum_probs=79.5
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhcCCchHHHHHHH
Q 045069 355 GYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST----FSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~ 430 (554)
+++++|+.-+..+. ...|.-.+..-.++|.+.+|+.++ .|+... |......+.....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34555555554443 222333333344455555555443 445444 333444445566666666666
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS--GALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+..-+ ...-+.+|..+|+|.+|+.+..++....+...- ..|+.-+...++.-+|-++..+.... |
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~-- 1029 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P-- 1029 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H--
Confidence 65532 133456667777777777777766543333322 45556666666666666666554432 1
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
......|++.-.|++|+++....
T Consensus 1030 ----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 11223455555666666555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.075 Score=40.25 Aligned_cols=57 Identities=11% Similarity=-0.010 Sum_probs=53.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
..+....|+.+.|++.|.+++..-|.+++.|..-+.++.-+|+.++|+.-+++.++.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 445778999999999999999999999999999999999999999999999999873
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.23 Score=38.89 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
+..+..-.....+.|++++|.+.|+.+....|-.+ .....|+.+|.+.|++++|...++++++.++..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 33444445556788999999999999999976554 5777899999999999999999999999886544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.3 Score=40.36 Aligned_cols=149 Identities=10% Similarity=-0.097 Sum_probs=78.7
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC--hh
Q 045069 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP---DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK--TE 444 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 444 (554)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-+..+...|+..+|...++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777788888888888888888877643111 2223333344556678888888888777662 12111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCChhhHHHHHHHHHhc------CChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSF-IWSLPKPVDPAVSGALLSCCHIY------GNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
....+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112233333333333 78888999999999999988888887776
Q ss_pred HHHc
Q 045069 518 TYAE 521 (554)
Q Consensus 518 ~~~~ 521 (554)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.23 Score=43.35 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=75.3
Q ss_pred HHHHhccC--CCCcchHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-----------
Q 045069 361 IQVFETMS--ERNIITYNSVILGLGL-----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL----------- 422 (554)
Q Consensus 361 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------- 422 (554)
...|.... +.|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 4667777777777654 35677777788899999999999999999988765431
Q ss_pred -----hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 423 -----VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 423 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
-+-++.++++|... |+.||..+-..+++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 23478899999984 9999999999999999887754
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.3 Score=37.24 Aligned_cols=195 Identities=19% Similarity=0.135 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccC-----CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMS-----ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC- 415 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 415 (554)
..+......+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 334444444555555555555444432 12223344444444455555555555555554322221 11111112
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CC-ChhhHHHHHHHHHhcCC
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGI--QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PV-DPAVSGALLSCCHIYGN 490 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~ 490 (554)
.+...|+++.|...+++.... .. ......+......+...++.+++...+.+... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455555555555555555321 11 01222233333334455555555555555432 22 23444555555555555
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
++.|...+.......|.....+..++..+...|.++++...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555554444444444444445555555555555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.5 Score=35.02 Aligned_cols=112 Identities=8% Similarity=0.096 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYS 150 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 150 (554)
.-..++..+...+.+......++.+...+. .+...++.++..+++.+ .......+.. ..+.......+..|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 344566666666677777777777766653 45556666777776543 2222233221 122333344566666
Q ss_pred cCCCHhHHHHhhcccCCCCcchHHHHHHHHHhC-CChhhHHHHHHH
Q 045069 151 KLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC-GFWDKSLQLFDW 195 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~ 195 (554)
+.+.++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 81 ~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 81 KAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 66666666666665532 22333333333 566666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.5 Score=34.89 Aligned_cols=127 Identities=9% Similarity=-0.032 Sum_probs=71.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
....++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. . ++.......++.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHH
Confidence 34456666666677777777777777765 245556777777776543 3333344432 1 1222233456666
Q ss_pred HhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 454 GLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY-GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
.+.+.++++.-++.++.. +...+..+... ++.+.|.+++++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 667777777777766542 22222333333 677777776665 335556666555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.051 Score=31.20 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=21.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
.+..|+.+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678899999999999999999855
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.057 Score=32.74 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
|..+..++.+|.+.|++++|+++++++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3567889999999999999999999999986544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.15 Score=41.91 Aligned_cols=103 Identities=11% Similarity=0.012 Sum_probs=70.7
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHH
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCH 486 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 486 (554)
..-+.+.|++++|..-|...... +++. ...|..-..++.+.+.++.|++-..+... +.....+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44577889999999999888773 4443 23455555667788888888877766542 223333334445677
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
+...++.|++-|+++.+.+|.........+.+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 77888888888888888888777666555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.88 Score=44.17 Aligned_cols=131 Identities=11% Similarity=-0.000 Sum_probs=75.3
Q ss_pred HHHHhcCChHHHHHHHH--HhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 77 RAYALAHRFNDAKSLFK--NLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 77 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
+...-.++++++..... .+... ++ ..-.+.++..+-+.|..+.|+++..+- . .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN-IP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhccc-CC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence 34456677877766654 22211 22 344677777788888888888765332 1 12455567888
Q ss_pred HhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHH
Q 045069 155 IDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK 233 (554)
Q Consensus 155 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 233 (554)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..++-.+...|+.+.-.++.+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888887775 556888888888888888888888887532 33444444445555444444444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.5 Score=35.54 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=81.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHH---
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM--- 449 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 449 (554)
.|..-+. +++.+..++|+.-|..+.+.|...-+. .-..........|+...|...|+++-.. .|.+....-+
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHH
Confidence 4444333 456677889999999988876543332 2333344566788889999999888664 2222222222
Q ss_pred --HHHHHhcCChHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 450 --VKLLGLAGNLEEAYSFIWSLPKP---VDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 450 --~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.-.+...|.++....-.+-+... -....-..|..+-.+.|++..|...|.++...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 22356778888887777766432 22334456777777888888888888887774
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.27 Score=39.37 Aligned_cols=80 Identities=18% Similarity=0.048 Sum_probs=48.3
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 445 HYIYMVKLL---GLAGNLEEAYSFIWSLPK-PVD-PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 445 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+...|+..+ .+.++.+++..++..+.. .|. +..-..-...+...|++.+|.++++.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 334444433 356677777777776642 232 222233344466777777777777777777777777666776666
Q ss_pred HccCC
Q 045069 520 AEDGR 524 (554)
Q Consensus 520 ~~~g~ 524 (554)
...|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 66555
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.38 E-value=5.7 Score=39.11 Aligned_cols=121 Identities=15% Similarity=0.056 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCChhhHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK---PVDPAVSGALLS 483 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~ 483 (554)
..+|...+.--...|+.+.+.-+|+...-. +..-...|-..++-....|+.+-|..++..... +..+.+...-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 346777777777778888888777777542 333345555566666666777777777665432 222222222222
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHH
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
.+-..|++..|..+++...+..|.....-..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 3445678888888888888777766666666666677777777777
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.1 Score=37.08 Aligned_cols=17 Identities=18% Similarity=-0.296 Sum_probs=10.7
Q ss_pred HHhcCChHHHHHHHHHH
Q 045069 485 CHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~ 501 (554)
+.+.++++.|.+.|+-+
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45566777777666644
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.59 Score=46.00 Aligned_cols=145 Identities=16% Similarity=0.096 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh-----hHHHHHHHHHH----hcCChHH
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT-----EHYIYMVKLLG----LAGNLEE 461 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~----~~g~~~~ 461 (554)
..-+|.-+... ++| .+..++....-.||-+.+++.+.+..+..++.-.. -.|...+..+. .....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455666652 333 34556666777899999999998876643333322 22333333332 2457788
Q ss_pred HHHHHHhCCC-CCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcC----CCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 462 AYSFIWSLPK-PVDPAVS-GALLSCCHIYGNSDLAEIVAHQLFEND----PRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 462 A~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
|.++++.+.. -|+...| ..-.+.+...|+.++|++.++++.... .-....+..+++++.-.++|++|.+.+.++
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 9999998864 4554444 344455788999999999999887642 223456677889999999999999999999
Q ss_pred hhcC
Q 045069 536 VDNG 539 (554)
Q Consensus 536 ~~~~ 539 (554)
.+.+
T Consensus 332 ~~~s 335 (468)
T PF10300_consen 332 LKES 335 (468)
T ss_pred Hhcc
Confidence 8753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.08 Score=29.72 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.++..++.++...|++++|++.+++.++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5678899999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.28 Score=38.48 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=24.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.++.++++.++..+.-..|+.+..-..-++.+...|+|.+|+++++++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444444444444444444444444444444444444444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.4 Score=33.85 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
....+..+..+|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.+.-++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344455666666666666666666542 3556666666667777777777777777666664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.4 Score=40.14 Aligned_cols=218 Identities=14% Similarity=0.066 Sum_probs=101.8
Q ss_pred HhcCChhhHHHHHhhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHhcc
Q 045069 251 ARCNCMNSAYHVFNSLFHP------DLVTWSALITGYSQQGDYGKALYYFRKLNMQG--KK---ADPVLIASVLAAAAKS 319 (554)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~---~~~~~~~~l~~~~~~~ 319 (554)
....+.++|+..+.+.... --.++..+..+.++.|.+++++..--.-++.- .. .--..|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777766655221 22445666777788888777665432211110 00 1112333344444444
Q ss_pred CCcchhHHHHHHHHHh-cCCc---hHHHHHHHHHHHHccCChHHHHHHHhccCC-------C--CcchHHHHHHHHHcCC
Q 045069 320 ANVWPGAVIHGYVIQH-GFEL---SVMVSSALVDMYSKCGYLGLGIQVFETMSE-------R--NIITYNSVILGLGLHG 386 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~ 386 (554)
-++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+ | ....|..|...|.+.+
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444443332221 1111 112333455555556666666666665432 1 2235666666677777
Q ss_pred ChHHHHHHHHHHHHc----CCCCCHHHHH-----HHHHHHhcCCchHHHHHHHHHhHHH---hCCCCC-hhHHHHHHHHH
Q 045069 387 FTYQAFEFFRDIIEK----GLNPDESTFS-----ALLCACCHGGLVNDGREIFTRMTEE---YGIQAK-TEHYIYMVKLL 453 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~----g~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~ 453 (554)
|+++|.-+..+..+. ++..-..-|. .+.-++...|+.-.|.+..++..+- .|-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 777766666555431 1111111122 2223444555555555555554331 111111 22234455555
Q ss_pred HhcCChHHHHHHHHh
Q 045069 454 GLAGNLEEAYSFIWS 468 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~ 468 (554)
...|+.+.|..-++.
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 566666665555544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.84 E-value=17 Score=42.45 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=55.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.-..+|....+.+.++|+++.|...+-.+.+.. -+.++...++.+-..|+...|+.++++.++....
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 345678888888999999999999888888776 4677888888999999999999999998865543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.11 Score=29.16 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
..+..++.+|...|++++|+..++++++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688899999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.76 E-value=4.8 Score=38.81 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChh--hHHHHHHHHH
Q 045069 411 SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPA--VSGALLSCCH 486 (554)
Q Consensus 411 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~~l~~~~~ 486 (554)
..+..++-+.|+.++|.+.++++.+.+.......+...|+.++...+.+.++..++.+-.. -|... .|...+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3456666778888888888888876422222345667788888888888888888877542 12222 2333222222
Q ss_pred hcCC---------------hHHHHHHHHHHHhcCCCCchhH
Q 045069 487 IYGN---------------SDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 487 ~~~~---------------~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
..+| ...|.+.+.++++.+|.-+.+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 2222 2346788899998888766544
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.1 Score=41.59 Aligned_cols=158 Identities=14% Similarity=0.080 Sum_probs=84.1
Q ss_pred HHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 280 GYSQQGDYGKALYYFRKLN-MQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
...-.++++.+.+..+.-. -..+ | ......++.-+.+.|-.+.|+.+...-. .-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3445667777655554111 0111 1 3335556666666666666665533211 1233455678888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 359 LGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 359 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
.|.++.++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+...++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 8877776654 455788888888888888888887776533 444555566677776666666655543 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
-++....++.-.|+.++..+++.+.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1344444455567777766666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.039 Score=44.35 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhh
Q 045069 109 CITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188 (554)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 188 (554)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777778888888888999888877667788889999999999888888888884433 334566777777777777
Q ss_pred HHHHHHHH
Q 045069 189 SLQLFDWM 196 (554)
Q Consensus 189 a~~~~~~m 196 (554)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777664
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=4.2 Score=34.38 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++|..|++-+...|+.++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 455566666666666666666666655443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=11 Score=38.98 Aligned_cols=93 Identities=12% Similarity=-0.154 Sum_probs=51.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCchhHHHHHHHHHccCChh
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND---PRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 526 (554)
+..+...|+..+|...+..+....++.....+.......|..+.++....+....+ -..|..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44556778888888877766544555666666666677788888877765543321 011223444444444444555
Q ss_pred HHHHHHHHHhhcCCcc
Q 045069 527 DVMKLRDDIVDNGLRK 542 (554)
Q Consensus 527 ~A~~~~~~~~~~~~~~ 542 (554)
.++-+----.+.++.|
T Consensus 494 ~~lv~ai~rqES~f~p 509 (644)
T PRK11619 494 QSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5443322223444433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.2 Score=42.11 Aligned_cols=125 Identities=12% Similarity=0.032 Sum_probs=73.3
Q ss_pred HcCCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 383 GLHGFTYQAFE-FFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 383 ~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
...|+...|-+ ++.-+....-.|+..-....| ....|+++.+.+.+..... -+.....+...+++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566555543 444444433444444433333 4566777777777776655 244555666777777777777777
Q ss_pred HHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 462 AYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 462 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
|..+-..|.. -.++.............|-++++.-.+++....+|+....
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 7777766542 2234444444444555667777777777777776554433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.19 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
|..+...+...|++++|...++++++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444455555555555555544444
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.18 Score=28.89 Aligned_cols=27 Identities=15% Similarity=-0.060 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..|...|.+.|++++|++++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777788888888888888885543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.2 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=11.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHhh
Q 045069 514 MLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 514 ~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++.++.+.|++++|.+.++++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444444444444444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.8 Score=34.95 Aligned_cols=97 Identities=7% Similarity=-0.056 Sum_probs=53.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHH--HH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYI--YM 449 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 449 (554)
.+..+..-|.+.|+.+.|.+.|.++.+....|... .+..+++.....+++..+.....+.........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455666666777777777777776654444433 455666666777777777776666655311111111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHhCC
Q 045069 450 VK--LLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 450 ~~--~~~~~g~~~~A~~~~~~~~ 470 (554)
.. .+...+++.+|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1234677777777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.63 E-value=3 Score=38.13 Aligned_cols=134 Identities=7% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHhhhccc-hhhH----HHHHHHHHHhcCCCChhHHHHHHHHHHh--cC----CchhHHHHhccCC-------CCCc
Q 045069 8 LVLELSKSHQS-LSRT----KELHALVAKASLLRDPFYATKLVRLYAL--NN----VLPSARILFDKTP-------QRSV 69 (554)
Q Consensus 8 ~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~A~~~~~~~~-------~~~~ 69 (554)
.+..++...+. ++.+ ..+++.+.+.|...+.++|-+-.-.... .. ....|..+++.|. .++-
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 44555555544 3333 6777777777777777666654333333 11 2445666666665 2233
Q ss_pred chHHHHHHHHHhcCCh----HHHHHHHHHhHHcCCCCCcc--cHHHHHHHhhcCCC--hhhHHHHHHHHHHhcCCCCHhH
Q 045069 70 FLWNSIIRAYALAHRF----NDAKSLFKNLLRTQLKPDNF--TYACITRACSENSD--LPGLRFVHGGAIVSGLGRDSIT 141 (554)
Q Consensus 70 ~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 141 (554)
.++.+++.. ..++. +.+..+|+.+.+.|...+.. ....++..+..... ..++..+++.+.+.|+++....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 344444443 22222 34555666666656554433 23333333322222 2355666666666666655555
Q ss_pred HH
Q 045069 142 SS 143 (554)
Q Consensus 142 ~~ 143 (554)
|.
T Consensus 220 yp 221 (297)
T PF13170_consen 220 YP 221 (297)
T ss_pred cc
Confidence 44
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.6 Score=36.25 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=60.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHH
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDES------TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKL 452 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 452 (554)
.-+...|++++|..-|.+.++. .|... .|..-..++.+.+.++.|+.-..+..+ +.|+ ......-..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 3477889999999999998884 34332 244445567788888888887777765 3443 3344445667
Q ss_pred HHhcCChHHHHHHHHhCC
Q 045069 453 LGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~ 470 (554)
|.+...+++|++-++++.
T Consensus 178 yek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 888888999988887764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=8.8 Score=34.88 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNM 299 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 299 (554)
+..+...-+.++++.|+.+..-.+.+.+..++ .....+.++...|+. +|...+..+.+
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444455555554322222222222222 223445555555553 45555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.84 Score=40.71 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.++..++..+...|+.+.+.+.++++. .+-+...|..++.+|.+.|+...|+..|+++.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 355666666666666666666666653 3556666666677777777777777666666653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.19 Score=27.84 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+..+..++.+.|++++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4567788899999999999999999999974
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.06 E-value=8.4 Score=34.31 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++......|...|.+.+|.++.++++..+|-+...+..|...|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444556778899999999999999999999999999999999999999888888888765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.91 E-value=5.7 Score=32.04 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHY-IYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
.+.++.+.+..++..+.- +.|..... ..-...+.+.|+|.+|+.+++++.. .+....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 455666777777766644 34442222 2223345566777777777777653 333333344444444444434444
Q ss_pred HHHHHHHhcCC
Q 045069 496 IVAHQLFENDP 506 (554)
Q Consensus 496 ~~~~~~~~~~p 506 (554)
.+.+++.+..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44555555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.91 E-value=2.8 Score=34.84 Aligned_cols=89 Identities=11% Similarity=-0.019 Sum_probs=42.7
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhhH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVS-----GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
...+..+|++++|...++.....+....+ ..|.+.....|.+++|+..++...+..- .+.....-++++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc
Confidence 33445556666666555543322222222 2233444555566665555544322100 11223344566666666
Q ss_pred hhHHHHHHHHHhhcC
Q 045069 525 WDDVMKLRDDIVDNG 539 (554)
Q Consensus 525 ~~~A~~~~~~~~~~~ 539 (554)
.++|+.-|++.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.36 Score=26.99 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.++..++.+|...|++++|.+.+++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999998754
|
... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.25 Score=25.74 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHH
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.....++.++...|++++|+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 455677788888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.17 Score=40.60 Aligned_cols=86 Identities=9% Similarity=0.110 Sum_probs=50.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4556666677777777777777665555566677777777777766777666651 111222345555556666
Q ss_pred HhHHHHhhcccCC
Q 045069 155 IDEAIKVFDGVSD 167 (554)
Q Consensus 155 ~~~A~~~~~~~~~ 167 (554)
+++|.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 6666666555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.77 E-value=8.1 Score=34.56 Aligned_cols=153 Identities=10% Similarity=0.042 Sum_probs=88.9
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH-cCCCCCcc
Q 045069 27 ALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR-TQLKPDNF 105 (554)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~ 105 (554)
...+..|.+++..-....++....+-..... .-|..++. ++....+|+.+|+..-. ..+--|..
T Consensus 101 ~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~------------~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~e 165 (292)
T PF13929_consen 101 LLKKSMGCELTKEDLISFLKLVIINLSSNKS------------FNYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEE 165 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHhccccccc------------hHHHHHHH---hhHHHHHHHHHhhccCcccceeeChH
Confidence 3444556666666666666654443221111 11444443 23445566666663221 12444666
Q ss_pred cHHHHHHHhhc-CC-ChhhHHHHHHHHHHh-cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----CCcchHHHHH
Q 045069 106 TYACITRACSE-NS-DLPGLRFVHGGAIVS-GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-----PDLVLCNSMI 177 (554)
Q Consensus 106 ~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li 177 (554)
....+++.... .+ ....--++.+.+... |-.++..+...++..+++.+++..-.++++.... .|...|..+|
T Consensus 166 vislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI 245 (292)
T PF13929_consen 166 VISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFI 245 (292)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHH
Confidence 66666666554 22 223333444444432 3466777778888888888888888888876543 5777888888
Q ss_pred HHHHhCCChhhHHHHHH
Q 045069 178 SGFAHCGFWDKSLQLFD 194 (554)
Q Consensus 178 ~~~~~~~~~~~a~~~~~ 194 (554)
......|+..-...+.+
T Consensus 246 ~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 246 KLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHcCCHHHHHHHhh
Confidence 88888888775555444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.68 E-value=12 Score=35.38 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ 334 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 334 (554)
..+.-+.|+++...+........ .++...+..+... ..++.+++....+...+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45667788888855555544322 2344444444333 77788877777766553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.55 Score=39.44 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSL-PK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
+..+..+.+.++..+|+...+.- +. +.+...-..++..++-.|++++|..-++-+-+..|+..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455566667777777666553 32 34555556666667777777777777777766666543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.13 E-value=9.2 Score=32.92 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=12.0
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 045069 486 HIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~ 505 (554)
...+++.+|+.+|++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666665553
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.13 E-value=13 Score=39.32 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQ 300 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 300 (554)
.-|..|+..|...|+.++|+++|.+....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 34788899999999999999999988763
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.7 Score=38.85 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred HhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC-CC------CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCC
Q 045069 31 KASLLRDPFYATKLVRLYALNNVLPSARILFDKTP-QR------SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD 103 (554)
Q Consensus 31 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 103 (554)
..|.+.+..+...++..-.....+++++..+-.++ +| +...+ +.++.+ -.-++++++.++..=.+.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 34555555556666655555666666666655444 11 11111 222222 23345667777766666777777
Q ss_pred cccHHHHHHHhhcCCChhhHHHHHHHHHHhc
Q 045069 104 NFTYACITRACSENSDLPGLRFVHGGAIVSG 134 (554)
Q Consensus 104 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 134 (554)
..+++.++..+.+.++...|.++.-+|..+.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777666666665543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.89 Score=38.98 Aligned_cols=64 Identities=5% Similarity=-0.126 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+..+..++...|++-++++.-...+...|.+..+|+.-+.+....=+.++|..-|.++++..+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3344455667778888888888888888888888888777777777777888877777766543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=12 Score=33.94 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=59.2
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-chHHHHHHHHHhHHHhCCCCChhHHHHH
Q 045069 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG-LVNDGREIFTRMTEEYGIQAKTEHYIYM 449 (554)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 449 (554)
+...-...+.++.+.++ ..++..+-.+.+ .+|...-...+.++.+.+ +...+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33333444444444444 334444444443 233333333333443332 12334444444332 2344445555
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+.++.+.|+. .|+..+-.....++ .....+.++...|+. +|...+.++.+.+| |..+.....+++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 5555555553 34433333222222 233455555666663 56666666666555 333333333333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.84 E-value=17 Score=35.37 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHH
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVI 379 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 379 (554)
..|.....+++..+.....+.-++.+..+|...| -+...|..++++|... ..++-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4455566667777777666677777777776654 3445566666666666 44555556664443 2333333333
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDE------STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.-|-+ ++.+.+..+|.++... +-|.. ..|..+... -..+.+..+++..++....|...-...+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33333 5666666666666654 22311 123333321 13455566666666655555555555555555566
Q ss_pred HhcCChHHHHHHHHhCC
Q 045069 454 GLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~ 470 (554)
....++.+|++++..+.
T Consensus 216 s~~eN~~eai~Ilk~il 232 (711)
T COG1747 216 SENENWTEAIRILKHIL 232 (711)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 66666666666665543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.2 Score=36.43 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCChhhHHHHHHHHHhcC-----------ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc-cCChhHHHHHHHHHhhcC
Q 045069 472 PVDPAVSGALLSCCHIYG-----------NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE-DGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 539 (554)
|....++..+..++...+ .+++|...|+++...+|.+ ..|.+ ....++|-++..++.+++
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQG 137 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334455555555544332 2445555555555556654 34443 344555666666665554
Q ss_pred Cc
Q 045069 540 LR 541 (554)
Q Consensus 540 ~~ 541 (554)
..
T Consensus 138 ~~ 139 (186)
T PF06552_consen 138 LG 139 (186)
T ss_dssp S-
T ss_pred hh
Confidence 43
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.77 Score=41.37 Aligned_cols=102 Identities=9% Similarity=-0.048 Sum_probs=72.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcC
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 489 (554)
--..-|.+.|.+++|+..|..... -.+.++.++..-..+|.+..++..|..-...... ..-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 346678899999999999998865 2333788888888889999988888776665431 222334444444455667
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
...+|..-++.++++.|++...--.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 88889999999999999865544433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.50 E-value=42 Score=39.48 Aligned_cols=310 Identities=11% Similarity=0.047 Sum_probs=151.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCC--CCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045069 175 SMISGFAHCGFWDKSLQLFDWMLRLGK--TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR 252 (554)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (554)
.+..+-.+.+.+.+|+..++.-..... .....-|..+...|+..++++....+...-. .+... ...+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccH-HHHHHHHHh
Confidence 455567788889999999888311100 1122334444558888888888777665311 11112 223445567
Q ss_pred cCChhhHHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCcchhHHH
Q 045069 253 CNCMNSAYHVFNSLFH--PD-LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL-IASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~ 328 (554)
.|+++.|...|+.+.. |+ ...++-++......|.++.++...+-..... .+.... ++.-+.+-=+.++++..+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 7889999999998843 33 5567777777777777777766555443321 122222 22222233345555555554
Q ss_pred HHHHHHhcCCchHHHHHH--HHHHHHccCChH--HHHHHHhccCC------------C-CcchHHHHHHHHHcCCChHHH
Q 045069 329 HGYVIQHGFELSVMVSSA--LVDMYSKCGYLG--LGIQVFETMSE------------R-NIITYNSVILGLGLHGFTYQA 391 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~~------------~-~~~~~~~l~~~~~~~~~~~~a 391 (554)
+. +.+ ..+|.. +.....+..+-+ .-.+..+.+.+ . -...|..++..+.-.. -
T Consensus 1541 l~---~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l 1609 (2382)
T KOG0890|consen 1541 LS---DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----L 1609 (2382)
T ss_pred hh---ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----H
Confidence 43 111 111111 111111111100 00011111110 0 0012333332221110 0
Q ss_pred HHHHHHHHHcCCCCCHHH------HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-----ChhHHHHHHHHHHhcCChH
Q 045069 392 FEFFRDIIEKGLNPDEST------FSALLCACCHGGLVNDGREIFTRMTEEYGIQA-----KTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 392 ~~~~~~m~~~g~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 460 (554)
....+.. .+..++..+ |..-+..-....+..+-+-.+++..-.....| -..+|...++...++|+++
T Consensus 1610 ~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1610 ENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 0000001 112332221 22222111111111221111222111111122 2567778888888899999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 461 EAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 461 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.|...+-......-+..+...+.-....|+...|+.++++.++.
T Consensus 1688 ~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99988766655446667777777788999999999999999977
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.44 E-value=29 Score=37.57 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=67.4
Q ss_pred CChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCCcchhHHHH
Q 045069 254 NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA----AKSANVWPGAVIH 329 (554)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~ 329 (554)
++++.|+..+..+. ...|.-.++.--++|.+++|+.++ +|+...+..+..+| ...+.++.|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44555555554443 223334444445566777776665 34554444444333 3344555554444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchH---HHHHHHHHcCCChHHHHHHHHHHHH
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITY---NSVILGLGLHGFTYQAFEFFRDIIE 400 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~ 400 (554)
+..-+. .--+.+|..+|+|.+|+.+-.++..+-.... ..|+..+...+++-+|-++..+..+
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 433211 1234556666777777777766664333332 5566667777777777776666543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.34 E-value=17 Score=34.67 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHh-CCCCCChhh-HHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYG-IQAKTEHYIYMVKLLGLAGNLEEAYSFIWS-LPKPVDPAV-SGALLSC 484 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~-~~~l~~~ 484 (554)
..|...+..-.+..-++.|..+|-++.+. + +.+++.++++++..++ .|+...|..+|+- |..-||... ....+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45677777778888899999999999986 6 6778888899988665 6888899999987 444444444 4566667
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRK--GAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+..-+|-..|..+|+..++.-..+ ..+|..++..-..-|+...+..+=+++.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 778899999999999887763333 678888887788889998888777776543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.9 Score=38.54 Aligned_cols=100 Identities=21% Similarity=0.188 Sum_probs=67.5
Q ss_pred hcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-------CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH
Q 045069 335 HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-------RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE 407 (554)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 407 (554)
.|.+.+..+...++..-....+++++...+=.++. ++...+ +.+..+ -.=+.++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 34455555556666656666777777777666653 222111 222222 233577888888888888999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
++++.+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998888887776654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.1 Score=32.37 Aligned_cols=52 Identities=19% Similarity=0.070 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHccCC
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR--KGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 524 (554)
.|......+...+...|+++.|++.+-.+++.+|. +...-..++.++.-.|.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455555555566666666666666665555433 24444555555555554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.55 Score=27.72 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++..|+.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888888765
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.17 E-value=2.1 Score=30.80 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 451 (554)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..+.+ ...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3456666777777778999999999999999999999999999988764 3334556666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.88 E-value=12 Score=32.25 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=9.5
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 045069 489 GNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~ 507 (554)
.|.-.+...+++..+.+|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4444455555555555554
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.70 E-value=19 Score=34.21 Aligned_cols=184 Identities=9% Similarity=0.080 Sum_probs=114.5
Q ss_pred cCChHHHHHHHhccCC----CCcchHHHHHHH-HHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcCCchH
Q 045069 354 CGYLGLGIQVFETMSE----RNIITYNSVILG-LGLHGFTYQAFEFFRDIIEKGLNPDES----TFSALLCACCHGGLVN 424 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~ 424 (554)
.|+.++|.+.+..+.. +....|-.|+.+ .....+..+|+++|+...= ..|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4788888888887763 344566666665 4456678888888888765 445433 2333344567888888
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHH-HHHHHHh---cCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIY-MVKLLGL---AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (554)
++..+-.+...++...|...-|.. +...+.+ .-..+.-..++..|........|..+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888887777776666665444433 2223333 234455556666666555566788888888888999999988888
Q ss_pred HHhcCCCCchhHHHHHH-----HHHccCChhHHHHHHHHHhhcCC
Q 045069 501 LFENDPRKGAYKVMLSN-----TYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 501 ~~~~~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+......+ ..-...+. +-.-..++++|.+.+..+-...+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 88884221 11111112 22334567777777766654433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.65 E-value=10 Score=30.99 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=65.2
Q ss_pred HHccCChHHHHHHHhccCCCCcchHHHHHH-----HHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHhcCCc
Q 045069 351 YSKCGYLGLGIQVFETMSERNIITYNSVIL-----GLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSAL--LCACCHGGL 422 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~~~ 422 (554)
+...++.++|+.-|..+.+.+...|-.|.. ...+.|+...|...|++.-...-.|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345566777777777766655555544432 3456677777777777766533333322 11111 112345666
Q ss_pred hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
++....-.+.+... +.+.-...-..|.-+-.+.|++..|.++|..+.
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 66666665555442 333333444555556666777777777776653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.52 E-value=3.3 Score=30.16 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 45566667777778999999999999999999999999999999886 33444477777654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.34 E-value=14 Score=32.15 Aligned_cols=167 Identities=8% Similarity=-0.038 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh--cCCchH--HHHHHHHHHHHccCChHHHHH
Q 045069 287 YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH--GFELSV--MVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 362 (554)
++.|.-+.++|.+. .--...|......|...|..+.|-..++..-+. ++.|+. ..|..-+......++...|.+
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34444444444332 111223444455566666666666555554321 222321 223322333333333333333
Q ss_pred HHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 363 VFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE----KGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
+ +...-..+.+..++++|-..+.+-.. ..-.|+. ..|...|-.+.-..++..|...++...+-.
T Consensus 152 l-----------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 152 L-----------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred H-----------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 3 33344556666666666555544221 1122333 245566666777788888888888743321
Q ss_pred --CCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 438 --GIQAKTEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 438 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
.-+-+..+...|+.+| ..|+.+++.+++.
T Consensus 221 ~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 221 AFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 1222455666677666 4677777777664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.4 Score=36.96 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHH-----hcCCCCHhHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIV-----SGLGRDSITSSAL 145 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 145 (554)
++..++..+...|+++.+.+.++.+..... -+...|..++.++.+.|+...|...++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 355566677777888888888888877643 3667788888888888888888888777765 3677777766655
Q ss_pred HHH
Q 045069 146 VTA 148 (554)
Q Consensus 146 i~~ 148 (554)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.97 E-value=12 Score=31.18 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=64.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhCCCC-CChhhHHHHHHHHHh
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKT----EHYIYMVKLLGLAGNLEEAYSFIWSLPKP-VDPAVSGALLSCCHI 487 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (554)
+...+...+++++|..-++.... .+.|. .+--.|.+.....|.+++|+..++....+ -.......-...+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 34456778888888888887654 22222 22234666778889999999999887643 223334445567888
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 045069 488 YGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~ 507 (554)
.|+-++|...|+++++..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 99999999999999988643
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.94 E-value=3.4 Score=26.13 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
...+..++.+.|++++|.+..+.+++..|++..+....
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 34566678899999999999999999999887665544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.93 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=22.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 513 VMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 513 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
..|+.+|...|+.+.|.+++++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788999999999999999888654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.24 E-value=34 Score=35.33 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS 219 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 219 (554)
+...--.+|-.|.++|++++|.++..+... ........|...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 444555677888899999999988855543 34556677778888887653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.1 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
++..+...|...|++++|+.+++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4556666666666666666666666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.12 E-value=5.5 Score=33.20 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCcchhHHHHHHHH
Q 045069 273 TWSALITGYSQQGDYGKALYYFRKLNMQGKKADP--VLIASVLAAAAKSANVWPGAVIHGYVI 333 (554)
Q Consensus 273 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 333 (554)
.+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556667777777777777777777665444433 244556666666677766666655544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.77 E-value=34 Score=34.81 Aligned_cols=246 Identities=11% Similarity=0.078 Sum_probs=121.7
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC-----CcchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 283 QQGDYGKALYYFRKLNM-------QGKKADPVLIASVLAAAAKSA-----NVWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 283 ~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
...|.+.|+.+++.+.+ .| .+.....+-.+|.+.. +.+.|..++....+.| .|+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455566665555544 33 1112333334444332 3344555555555555 2333222222222
Q ss_pred HHc-cCChHHHHHHHhccCC-CCcchHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 045069 351 YSK-CGYLGLGIQVFETMSE-RNIITYNSVILGLG----LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424 (554)
Q Consensus 351 ~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 424 (554)
... ..+...|.++|....+ -.+..+-.+..+|. ...+...|..++.+..+.| .|...--...+..+.. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 222 2345566666665543 22333322222222 2346777778888777776 3332222222223333 6666
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHH---Hh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CChHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLL---GL----AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY----GNSDL 493 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 493 (554)
.+.-.+..+.+- +.......-..+.... .. ..+.+.+..++.+...+.+......+...|..- .+.+.
T Consensus 415 ~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 666555555552 3332211111111111 11 224556666666665555566655555554332 36788
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcC
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 539 (554)
|...|.++.... ......++..+.. .. +..|.+++++..+.+
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcC
Confidence 888888877766 6666677666553 23 678888888876644
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.76 E-value=21 Score=32.44 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=16.7
Q ss_pred HHHHHccCChhHHHHHHHHHh
Q 045069 516 SNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+....+.++|++|.+.|+-..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 345678999999999998654
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.65 Score=26.12 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAY 463 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~ 463 (554)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3555555555555555555553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.61 E-value=37 Score=35.06 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCCh-------hhHHHHHHHHHHhcCCCCH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-------PGLRFVHGGAIVSGLGRDS 139 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~ 139 (554)
.--.+|-.|.|.|++++|.++....... .......+...+..+....+- ++...-+++..+.....|+
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 3446888899999999999999666544 566667888888888765322 3444555555544332244
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.59 E-value=8.9 Score=27.89 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHH
Q 045069 119 DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR 198 (554)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 198 (554)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|-.++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 457777777777665422 333333445678899999999999999988999998877654 66777777777777776
Q ss_pred CCCCCChhhHH
Q 045069 199 LGKTPDEYTLV 209 (554)
Q Consensus 199 ~~~~p~~~~~~ 209 (554)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.38 E-value=23 Score=32.45 Aligned_cols=93 Identities=12% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHhccCC-------CCcchHHHHHHHHHcCCC----hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCc--
Q 045069 358 GLGIQVFETMSE-------RNIITYNSVILGLGLHGF----TYQAFEFFRDIIEKGLNPDES--TFSALLCACCHGGL-- 422 (554)
Q Consensus 358 ~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~-- 422 (554)
.+|..+|+.|++ ++..++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 345556666653 333444444433 2222 356777888888888776544 34444433332222
Q ss_pred hHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
..++.++++.+.++ |+++....|..++-..
T Consensus 198 v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 198 VARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 44788888888886 8888877776655433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.3 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHh
Q 045069 512 KVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 512 ~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+..++.++...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444455555554444444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.13 E-value=11 Score=38.23 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=38.1
Q ss_pred ChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 458 NLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
+...|.++|..............+..++.. ..+...|..+++++.+.++............+.. ++++.+.-.+.
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 345566666555443333333333333321 2356666666666666652221222222222223 56666655555
Q ss_pred HHhhcCCc
Q 045069 534 DIVDNGLR 541 (554)
Q Consensus 534 ~~~~~~~~ 541 (554)
.+.+.+..
T Consensus 422 ~~a~~g~~ 429 (552)
T KOG1550|consen 422 YLAELGYE 429 (552)
T ss_pred HHHHhhhh
Confidence 55544443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.05 E-value=2.2 Score=38.57 Aligned_cols=86 Identities=13% Similarity=-0.054 Sum_probs=59.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (554)
..-|.++|.+++|+.+|...+. +.| |.+++..-..+|.+...+..|+.-......- -......|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 3469999999999999999887 677 8888888889999999999888777766541 1111233333333333345
Q ss_pred ChHHHHHHHHh
Q 045069 458 NLEEAYSFIWS 468 (554)
Q Consensus 458 ~~~~A~~~~~~ 468 (554)
+..+|.+-++.
T Consensus 180 ~~~EAKkD~E~ 190 (536)
T KOG4648|consen 180 NNMEAKKDCET 190 (536)
T ss_pred hHHHHHHhHHH
Confidence 55555555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.02 E-value=21 Score=31.45 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGK--KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
+..-.+.|++++|...|+.+..... +....+...++-++.+.++++.|....++..+..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3445667888888888887775421 2223444455556666666666666666665543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.84 E-value=4.2 Score=32.19 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=51.1
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTE-HYIYMVKLLGLAGNLEEAYSFIWSLPKPV-DPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 493 (554)
.-...++.+++..+++.+.- +.|... .-..-...+...|+|++|.++++++.... ....-..|...|........
T Consensus 19 ~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 33458899999999999965 555532 22223345678999999999999987643 33333344444444333223
Q ss_pred HHHHHHHHHhc
Q 045069 494 AEIVAHQLFEN 504 (554)
Q Consensus 494 A~~~~~~~~~~ 504 (554)
=..+..++++.
T Consensus 96 Wr~~A~~~le~ 106 (153)
T TIGR02561 96 WHVHADEVLAR 106 (153)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=4.4 Score=36.32 Aligned_cols=59 Identities=15% Similarity=-0.015 Sum_probs=31.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+-.+|.+.++++.|..+.+.++...|+++.-+.--+-+|.+.|.+..|..-++..++..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 33344555555555555555555555555555555555555555555555555554443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.31 E-value=18 Score=29.95 Aligned_cols=109 Identities=8% Similarity=0.030 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhcCCchHHHHHHHHHhHHH----hCCCCC-hhHHHHHHHHHHhcC---
Q 045069 389 YQAFEFFRDIIEKGLNPDEST---FSALLCACCHGGLVNDGREIFTRMTEE----YGIQAK-TEHYIYMVKLLGLAG--- 457 (554)
Q Consensus 389 ~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g--- 457 (554)
+.|.+.++.-...+ +.|... |...+.-+++.....++.+++++...+ ..+.|+ ..++..+..+|...+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 44555555544321 223333 333333344444434444444443332 346776 467777877776543
Q ss_pred -ChHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 458 -NLEEAYSFIWSLP--------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 458 -~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..+|.++|++.. ..|+...|+.-+.... +|-++..++.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 4445555555442 3677777777666553 355555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=86.20 E-value=20 Score=34.03 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-ccCChhHHHHHHHHHhh
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPR-KGAYKVMLSNTYA-EDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 537 (554)
..+..+.+.|-+..|.++.+-+...+|. ||......++.|+ +.++++--+++.+....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455677889999999999999999998 8887777777775 67888878888887655
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.83 E-value=8.5 Score=32.40 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=52.4
Q ss_pred ChHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCchhHHHHHHHHHccCChhHHH
Q 045069 458 NLEEAYSFIWSLPKPV--DPAVSGALLSCCHIYGNSDLAEIVAHQLFEND----PRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 458 ~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
.-++|.+.|-.+...| +.......+..|....|.+++++++-++++.. ..++.++..|+.++.+.|++++|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3466777777765432 33333444445566789999999999999983 346889999999999999999874
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=7.6 Score=37.10 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=95.0
Q ss_pred HHccCChHHHHH-HHhccCC----CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 045069 351 YSKCGYLGLGIQ-VFETMSE----RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVND 425 (554)
Q Consensus 351 ~~~~g~~~~A~~-~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 425 (554)
-...|++..|.+ ++..+.. |+..... ...+...|+++.+...+...... +.....+...+++...+.|+++.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 344577666654 3333332 4433333 33456789999999988877654 45566788899999999999999
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 426 GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
|..+-.-|... .+. ++++...-.......|-++++.-.|++.. .+|....|..+++.-.-.++...-.+.|...++
T Consensus 376 a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 453 (831)
T PRK15180 376 ALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGIQ 453 (831)
T ss_pred HHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhhh
Confidence 99999888774 333 33333333333445678899999998863 466666776666654333443334444544444
Q ss_pred cC
Q 045069 504 ND 505 (554)
Q Consensus 504 ~~ 505 (554)
..
T Consensus 454 ~~ 455 (831)
T PRK15180 454 SQ 455 (831)
T ss_pred hh
Confidence 43
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=84.53 E-value=5 Score=34.64 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCh-------HHHHHHHHHHHhcC--CC----CchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 477 VSGALLSCCHIYGNS-------DLAEIVAHQLFEND--PR----KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+..+.+.|...|+. ..|.+.|+++.+.. |. ...+..+++.+..+.|++++|.+.|.+++..+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 334455555555553 44555555555552 32 24677888999999999999999999998754433
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.51 E-value=61 Score=34.61 Aligned_cols=128 Identities=11% Similarity=0.103 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCC--CCHhHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG--RDSITSSALVTA 148 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~ 148 (554)
-|..|+..|...|+.++|+++|.+.... .. +.. ....+.-+.+.+-+.+.+-+ +-...|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~-~~-~~d-----------~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~---- 568 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE-DS-DTD-----------SFQLDGLEKIIEYLKKLGAENLDLILEYAD---- 568 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc-cc-ccc-----------cchhhhHHHHHHHHHHhcccchhHHHHHhh----
Confidence 4889999999999999999999998764 11 111 11112222233334444322 11122221
Q ss_pred HHcCCCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcc
Q 045069 149 YSKLSLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLW 216 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 216 (554)
+.-..+.+...++|-.-.. .....-.. +-.|......+-+..+++.+....-.++..-.+.++.-|+
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRDD-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHHH-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 1234556667777755111 11111222 3346677778888888988877655666666666665553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.36 E-value=34 Score=34.15 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
.-|..|.++..+.+++..|.+.|.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 345555555555555555555555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.8 Score=23.01 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
..+..+...+...|+++.|...++++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567788889999999999999999988766
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.02 E-value=2.4 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.0
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 045069 448 YMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~ 467 (554)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.90 E-value=0.58 Score=42.24 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=39.9
Q ss_pred CChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 457 GNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 457 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
|.+++|++.+..... ++....+..-.+++.+.++...|++-+..+++++|+...-|-.-+.+....|+|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 444444444444321 222333333334444555555555555555555555555555444455555555555555555
Q ss_pred HhhcCC
Q 045069 535 IVDNGL 540 (554)
Q Consensus 535 ~~~~~~ 540 (554)
..+.++
T Consensus 208 a~kld~ 213 (377)
T KOG1308|consen 208 ACKLDY 213 (377)
T ss_pred HHhccc
Confidence 544443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.88 E-value=26 Score=29.90 Aligned_cols=159 Identities=13% Similarity=-0.019 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc-hHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSERNII-TYNSVILG--LGLHGFTYQAFEFFRDIIEKGLNPDES--TFSALL 414 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll 414 (554)
-+.+||-|.-.+...|+++.|.+.|+...+.|+. -|..+=.+ +--.|++.-|.+-+...-+.... |+. -|..+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3567888888888899999999999988764442 33333332 33468888888877777764322 222 233332
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCChhhHHHHHHHHHhc
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL-PK-----PVDPAVSGALLSCCHIY 488 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~ 488 (554)
...-++.+|..-+.+--+ +...+-..++.+ ..|.-.=..+.+.+-...- .. ..-..+|.-|..-+...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~--~~d~e~WG~~iV-~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE--KSDKEQWGWNIV-EFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH--hccHhhhhHHHH-HHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 234456666554433322 222222222222 2221111111222211111 10 12234677788888899
Q ss_pred CChHHHHHHHHHHHhcC
Q 045069 489 GNSDLAEIVAHQLFEND 505 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~ 505 (554)
|+.++|..+|+-++..+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999999888764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.53 E-value=19 Score=36.86 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.....|+..|...|++..|.+.+-++.+
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 3444577777777778777777665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.63 E-value=64 Score=33.44 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHhc---CCCCc-hhH-----HHHHHHHHccCChhHHHHHHHHHhh
Q 045069 488 YGNSDLAEIVAHQLFEN---DPRKG-AYK-----VMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~---~p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.|+..+.......+... .|+.. ..+ ..+.+.+...|+.++|.+...+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 67777766666555544 22222 222 3455568889999999998887653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.55 E-value=5.6 Score=34.28 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
=+.++.+..+++.+.+--.++++..|+.....+.++..+.....+++|+..+++.
T Consensus 50 ralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 50 RALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555555555555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.07 E-value=11 Score=27.21 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh
Q 045069 287 YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH 335 (554)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 335 (554)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555555667777777777777777777777777777766543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.29 E-value=1.9 Score=29.72 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=34.6
Q ss_pred hcCChHHHHHHHHHHHhcCCCCch---hHHHHHHHHHccCChhHHHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGA---YKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
..++.++|+..++.+++..++.+. ++..|+.+|+..|++.+++++--.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888655443 444566778888888888776544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.27 E-value=29 Score=28.51 Aligned_cols=38 Identities=3% Similarity=-0.064 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhc
Q 045069 126 VHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFD 163 (554)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 163 (554)
.++-+.+.+++|+...+..++..+.+.|++..-..++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34444455666666666666666666666555444443
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.46 E-value=4.4 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
|+.+.|..+|++++...|.++.++...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888889999998888888888777643
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.35 E-value=83 Score=33.24 Aligned_cols=219 Identities=11% Similarity=-0.059 Sum_probs=119.0
Q ss_pred HHhccCCcchhHHHHHHHHHhcCCchH-------HHHHHHH-HHHHccCChHHHHHHHhccCC--------CCcchHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGFELSV-------MVSSALV-DMYSKCGYLGLGIQVFETMSE--------RNIITYNSV 378 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 378 (554)
......++.+|..+..++...-..|+. ..++.+- ......|+++.|.++-+...+ +.+..+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445667888888888777654323221 1222221 223346788888877665442 455667777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH---HHHHHH--HHHhcCCch--HHHHHHHHHhHHHhCCCCC-----hhHH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDES---TFSALL--CACCHGGLV--NDGREIFTRMTEEYGIQAK-----TEHY 446 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll--~~~~~~~~~--~~a~~~~~~~~~~~~~~~~-----~~~~ 446 (554)
..+..-.|++++|..+..+..+.--.-+.. .|..+. ..+...|.. .+.+..+............ ..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999998887766532122222 233332 234556633 3333444444332111111 2333
Q ss_pred HHHHHHHHhcCChHHHHHHHHh----CC-CCCCh--hhH--HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCchhHHH-
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWS----LP-KPVDP--AVS--GALLSCCHIYGNSDLAEIVAHQLFEND--PRKGAYKVM- 514 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~----~~-~~~~~--~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~- 514 (554)
..+..++.+ .+.+..-... .. ..|.+ ... ..|+......|+.++|...+.++.... +.....|..
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 3333322222 11 12221 112 256777788999999999999988873 321222221
Q ss_pred --H--HHHHHccCChhHHHHHHHHHh
Q 045069 515 --L--SNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 515 --l--~~~~~~~g~~~~A~~~~~~~~ 536 (554)
. .......|+..+|.....+-.
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1 223456899999988887743
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.26 E-value=18 Score=26.36 Aligned_cols=78 Identities=9% Similarity=-0.082 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
..++..|-+.+...+-. ....-..-+..+..+|++++|..+.+....||...|-++-. .+.|..+++..-+..|-..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44555666666554422 22222223346677888888888888888888888876655 3566666666666666665
Q ss_pred C
Q 045069 99 Q 99 (554)
Q Consensus 99 ~ 99 (554)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=80.18 E-value=15 Score=28.50 Aligned_cols=43 Identities=5% Similarity=0.044 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 493 LAEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 493 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
.+.++|+.+... ....+..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 788888888776 4667788888888899999999999998764
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 4e-08
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 8/136 (5%)
Query: 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
+A +L A ++ G Q A L L +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 369 ER-------NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL-CACCHG 420
+ + YN+V+LG G + + + GL PD +++A L C
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 421 GLVNDGREIFTRMTEE 436
+M++E
Sbjct: 215 QDAGTIERCLEQMSQE 230
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 1e-07
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 7/137 (5%)
Query: 86 NDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSAL 145
A L + P A + + L + G + L A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 146 VTAYSKLSLIDEAIKVFDGVSD-------PDLVLCNSMISGFAHCGFWDKSLQLFDWMLR 198
+ A + L + N+++ G+A G + + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 199 LGKTPDEYTLVGLISGL 215
G TPD + + +
Sbjct: 194 AGLTPDLLSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 6e-05
Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 5/150 (3%)
Query: 52 NVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACIT 111
++L K ++ ++N+++ +A F + + + L PD +YA
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 112 RACS-ENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--- 167
+ ++ D + GL ++ ++ L++ + +++ KV S
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
Query: 168 -PDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
P V + ++ +L +
Sbjct: 268 LPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 64/496 (12%), Positives = 125/496 (25%), Gaps = 165/496 (33%)
Query: 12 LSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALN----NVLPSARILFDKTPQR 67
+K + +SR + L LR K V + + + + + Q
Sbjct: 126 FAKYN--VSRLQPYLKLRQALLELRP----AKNVLIDGVLGSGKTWV-ALDVCLSYKVQC 178
Query: 68 S----VFLW---------NSII-------------------RAYALAHRFNDAKSLFKNL 95
+F W +++ + + R + ++ + L
Sbjct: 179 KMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 96 LRTQLKP------DN---------FTYAC----ITRACSENSDLPGLRFVH--GGAIVSG 134
L+++ N F +C TR L H
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 135 LGRD---SITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF--WDKS 189
L D S+ L L E + +P L S+I+ G WD
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPR--EVLTT-----NP-RRL--SIIAESIRDGLATWDNW 347
Query: 190 LQLFDWMLRLGKT---------PDEY-----TLV----------GLISGLWEPSLLSVGQ 225
+ +L P EY L L+S +W + S
Sbjct: 348 KHVNCD--KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 226 GIHGFCLKSSF---DSYDYVSSV-LVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGY 281
+ K S + S+ + + + N H +++ Y
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL------H------RSIVDHY 453
Query: 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH-GFELS 340
+ + + + Y H G L
Sbjct: 454 NIP----------KTFDSDDLIPPY---------------------LDQYFYSHIGHHLK 482
Query: 341 VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE 400
+ + ++ +L F E+ I ++ G T Q +F++ I
Sbjct: 483 NIEHPERMTLFRMV-FLDFR---F---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 401 KGLNPDESTFSALLCA 416
++ + L+ A
Sbjct: 536 D----NDPKYERLVNA 547
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 554 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.03 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.92 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.86 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.77 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.76 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.73 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.72 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.69 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.58 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.43 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.43 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.39 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.35 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.24 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.23 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.16 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.09 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.04 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.72 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.67 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.45 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.42 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.38 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.36 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.95 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.83 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.78 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.57 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.2 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.17 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.64 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.43 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.74 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.43 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.26 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.15 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.8 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.38 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.17 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.81 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.46 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.26 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.18 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.85 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.59 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.35 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.15 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.73 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 88.66 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.64 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.33 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.34 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.18 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 85.67 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.49 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.07 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.49 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.01 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 82.08 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=360.94 Aligned_cols=484 Identities=8% Similarity=-0.053 Sum_probs=402.6
Q ss_pred HHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHH
Q 045069 47 LYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFV 126 (554)
Q Consensus 47 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (554)
.+.+.|....+...+..++.+++..|+.++..|.+.|++++|+.+|++|.+ ..|+..++..++.+|.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345677788888888888888999999999999999999999999999986 467889999999999999999999999
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCC-------------------CcchHHHHHHHHHhCCChh
Q 045069 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDP-------------------DLVLCNSMISGFAHCGFWD 187 (554)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~ 187 (554)
++.+... +++..+++.++.+|.+.|++++|+++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987543 678899999999999999999999999965433 3778999999999999999
Q ss_pred hHHHHHHHHHHCCCCCC-hhhHHHHHHHcccCCccchhhH--H-HHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHH
Q 045069 188 KSLQLFDWMLRLGKTPD-EYTLVGLISGLWEPSLLSVGQG--I-HGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVF 263 (554)
Q Consensus 188 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (554)
+|.++|++|.+.+ |+ ...+..+...+...+..+.+.. + +..+...+..+...+++.++..|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999998863 44 3445555544443333222111 1 344444455556667777888999999999999999
Q ss_pred hhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchH
Q 045069 264 NSLFH--PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSV 341 (554)
Q Consensus 264 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 341 (554)
+++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99966 889999999999999999999999999998765 3367789999999999999999999999998664 5678
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 8999999999999999999999998763 456799999999999999999999999999853 346789999999999
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC--hhhHHHHHHHHHhcC
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-------KPVD--PAVSGALLSCCHIYG 489 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~~ 489 (554)
+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999884 45678999999999999999999999999873 2455 679999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++++|.+.++++.+..|+++..+..++.+|.+.|++++|.++++++.+..+.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999987543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=345.45 Aligned_cols=479 Identities=10% Similarity=-0.039 Sum_probs=412.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHH
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTP--QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITR 112 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 112 (554)
.+++..|+.++..|.+.|++++|..+|+++. .|+..++..++.+|.+.|++++|+.+|+.+.. .+++..+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHH
Confidence 3678899999999999999999999999886 57778999999999999999999999999865 3678899999999
Q ss_pred HhhcCCChhhHHHHHHHHHHh---------------cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--C-CcchHH
Q 045069 113 ACSENSDLPGLRFVHGGAIVS---------------GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--P-DLVLCN 174 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 174 (554)
++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|++.|+++.+ | +...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853211 2234588999999999999999999999999976 3 334455
Q ss_pred HHHHHHHhCCChhhHHH--H-HHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045069 175 SMISGFAHCGFWDKSLQ--L-FDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA 251 (554)
Q Consensus 175 ~li~~~~~~~~~~~a~~--~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (554)
.+...+...+..+.+.. + +..+...+..+...+|..++..+.+.|++++|..+++.+.+. +++..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 55544443333222211 1 455555555566677888899999999999999999988776 588999999999999
Q ss_pred hcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 252 RCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
+.|++++|.++|+++ .+.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998 34578899999999999999999999999998653 55788999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP 405 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 405 (554)
|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99998865 45678999999999999999999999998763 577899999999999999999999999999853 34
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEY---GIQAK--TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVS 478 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 478 (554)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++. .+.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 67899999999999999999999999998732 55777 7899999999999999999999999874 36688999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
..++.+|...|++++|.+.++++++.+|+++..+..++.+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-27 Score=227.32 Aligned_cols=371 Identities=16% Similarity=0.128 Sum_probs=252.3
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345566777777777777776652 2233345555556667777777777777766654 33566666677777777777
Q ss_pred hHHHHhhcccCC--C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHH
Q 045069 156 DEAIKVFDGVSD--P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCL 232 (554)
Q Consensus 156 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 232 (554)
++|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+. .|+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~-------------------------- 135 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLY-------------------------- 135 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCT--------------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcH--------------------------
Confidence 777776666543 3 2335666666666666666666666666543 22221
Q ss_pred HhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 045069 233 KSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLI 309 (554)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 309 (554)
..+..+...+...|++++|.+.|+++ .+.+..+|..+...+...|++++|...|+++.
T Consensus 136 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------- 196 (388)
T 1w3b_A 136 --------CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV----------- 196 (388)
T ss_dssp --------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------
T ss_pred --------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence 11222233333334444444443333 11233445555555555555555555555544
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC--CC-CcchHHHHHHHHHcCC
Q 045069 310 ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS--ER-NIITYNSVILGLGLHG 386 (554)
Q Consensus 310 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~ 386 (554)
+.+ +.+...+..+...+...|++++|...|++.. .| +..++..+...+...|
T Consensus 197 ------------------------~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 197 ------------------------TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp ------------------------HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ------------------------hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence 433 2334556666666777777777777776554 23 4567777888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
++++|...|+++.+. .|+ ..+|..+...+.+.|++++|...|+++.+. .+.+..++..++..+.+.|++++|.+.
T Consensus 252 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 252 LIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp CHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999998884 454 568888999999999999999999999884 566788899999999999999999999
Q ss_pred HHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 466 IWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 466 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
++++.. +.+..++..++.++.+.|++++|...++++++.+|+++..+..++.++...|+
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 988653 55678899999999999999999999999999999999999999998887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=246.19 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=147.6
Q ss_pred HHHHHHHHHhHHcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcc
Q 045069 86 NDAKSLFKNLLRTQLKPDNF-TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 86 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
..+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34566777787777766554 58889999999999999999999999999999999999999999887764331
Q ss_pred cCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHH
Q 045069 165 VSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSS 244 (554)
Q Consensus 165 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (554)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||.
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---- 140 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL---- 140 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH----
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc----
Confidence 234557888999999999999999999999998888888888888888888888877654
Q ss_pred HHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch
Q 045069 245 VLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 324 (554)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++
T Consensus 141 ---------------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 141 ---------------------------RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 44555555555555666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
|.+++++|.+.|..|+..||+.++..|+.
T Consensus 194 A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 194 VYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666655554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-26 Score=220.60 Aligned_cols=355 Identities=14% Similarity=0.085 Sum_probs=290.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCh-hhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 045069 177 ISGFAHCGFWDKSLQLFDWMLRLGKTPDE-YTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNC 255 (554)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 255 (554)
...+.+.|++++|.+.+.++.+. .|+. ..+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455667777777777666554 3333 344444455566677777777666666543 4456677888888888888
Q ss_pred hhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHH
Q 045069 256 MNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYV 332 (554)
Q Consensus 256 ~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 332 (554)
+++|...|+++ .+.+..+|..+..++.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888877 33455678889999999999999999999988763 223445667777888889999999999998
Q ss_pred HHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HH
Q 045069 333 IQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ES 408 (554)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 408 (554)
.+.. +.+..++..+...+...|++++|...|+++.+ | +...|..+...+...|++++|...+++..+. .|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 8875 44578899999999999999999999998873 4 4567888999999999999999999999984 554 67
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
++..+...+...|++++|...|+++.+. .+.+..++..++..+.+.|++++|.+.++++. .+.+..++..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8999999999999999999999999873 44457889999999999999999999999875 4678889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++++..+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999987643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=239.90 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------cchhHHHHHHHHHhcCCchHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN---------VWPGAVIHGYVIQHGFELSVM 342 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 342 (554)
..++.+|++|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987765 467899999999999999999
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccC----CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMS----ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999987 48999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999996 9999999999999998753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-25 Score=219.07 Aligned_cols=428 Identities=10% Similarity=-0.078 Sum_probs=193.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYS 150 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 150 (554)
.+......+.+.|++++|+..|+++.+.+ |+...|..+..++.+.|++++|...++.+.+.++ .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34445555666666666666666666543 4555666666666666666666666666665542 24455566666666
Q ss_pred cCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-------------------CChhhH
Q 045069 151 KLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT-------------------PDEYTL 208 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------------p~~~~~ 208 (554)
..|++++|...|+++.. ++......++..+........+.+.+..+...+.. |+....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 66666666666655432 22223333333333222222222222222111111 111111
Q ss_pred HHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh---cCChhhHHHHHhhcCC-----------------
Q 045069 209 VGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR---CNCMNSAYHVFNSLFH----------------- 268 (554)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------- 268 (554)
...+..+......... ..+.+...+..+...+.. .|++++|...|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 165 ASFFGIFKPELTFANY----------DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp HHHHTTSCCCCCCSSC----------CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred HHHHhhcCHHHHHHHh----------cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 1111111110000000 001112222222222222 4445555444444311
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 045069 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348 (554)
Q Consensus 269 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 348 (554)
.+..++..+...+...|++++|...++++.+.... ...+..+..++...|+++.|...++.+.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 12234445555555555555555555555544322 4455555555555555555555555555443 22344455555
Q ss_pred HHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 045069 349 DMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVND 425 (554)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 425 (554)
..|...|++++|...|+...+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 555555555555555554431 233444455555555555555555555555421 1123344445555555555555
Q ss_pred HHHHHHHhHHHhCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHH
Q 045069 426 GREIFTRMTEEYGIQAK----TEHYIYMVKLLGL---AGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 496 (554)
|...++++.+...-.++ ...+..++..+.. .|++++|.+.++++. .+.+..++..+..++...|++++|..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555554442111111 2244555555555 555555555554432 23344444555555555555555555
Q ss_pred HHHHHHhcCCCCchhHHHH
Q 045069 497 VAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 497 ~~~~~~~~~p~~~~~~~~l 515 (554)
.++++.+..|.++..+..+
T Consensus 471 ~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 5555555555554444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=220.27 Aligned_cols=429 Identities=11% Similarity=-0.035 Sum_probs=322.1
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHH
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFA 181 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 181 (554)
..+......+.+.|++++|...|+.+.+.+ |+...+..+..++.+.|++++|+..|+++.+ .+..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345667778889999999999999999986 6899999999999999999999999998765 45568899999999
Q ss_pred hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh---cCChhh
Q 045069 182 HCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR---CNCMNS 258 (554)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 258 (554)
+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+............. ......
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 34444444444333322222222222211111111111000000000000 011111
Q ss_pred HHHHHhhc---------C-CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CCHHHHHHH
Q 045069 259 AYHVFNSL---------F-HPDLVTWSALITGYSQ---QGDYGKALYYFRKLNM-----QGKK--------ADPVLIASV 312 (554)
Q Consensus 259 a~~~~~~~---------~-~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l 312 (554)
+...+... . +.+...+......+.. .|++++|...++++.+ .... .+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111111 1 1224455555555554 8999999999999987 3212 234567778
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 389 (554)
...+...|+++.|...++.+.+.... ...+..+..++...|++++|...++.+.+ .+...+..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88999999999999999999988644 88899999999999999999999998764 45678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
+|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999853 224568888999999999999999999999884 4556788999999999999999999999886
Q ss_pred CC--CCC------hhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 470 PK--PVD------PAVSGALLSCCHI---YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 470 ~~--~~~------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.. +.+ ...+..++..+.. .|++++|...++++.+..|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 42 222 3388899999999 999999999999999999999999999999999999999999999999987
Q ss_pred CCc
Q 045069 539 GLR 541 (554)
Q Consensus 539 ~~~ 541 (554)
.+.
T Consensus 479 ~~~ 481 (514)
T 2gw1_A 479 ART 481 (514)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-23 Score=206.68 Aligned_cols=352 Identities=11% Similarity=0.015 Sum_probs=173.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHH
Q 045069 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTA 148 (554)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 148 (554)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|.+.++.+.+.++ .+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3456777778888888888888888887763 23566777788888888888888888888877753 366777778888
Q ss_pred HHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCCChhhHHHHHHHcccCCccc
Q 045069 149 YSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRL------GKTPDEYTLVGLISGLWEPSLLS 222 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~ 222 (554)
+...|++++|+..|+.+. .++...+..+..+...+....|...++++... ...|+.......+.. .+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI----FDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT----SCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh----cChH
Confidence 888888888888886442 22222233344455555567788888777442 122333332222211 1111
Q ss_pred hhhHHHHHHHHhcCCCch---hHHHHHHHHHHh--------cCChhhHHHHHhhcCC--CC--------hhhHHHHHHHH
Q 045069 223 VGQGIHGFCLKSSFDSYD---YVSSVLVSMYAR--------CNCMNSAYHVFNSLFH--PD--------LVTWSALITGY 281 (554)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~ 281 (554)
.+...+. .....+. .....+...+.. .|++++|..+++.+.. |+ ..++..+...+
T Consensus 178 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVN----TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSC----CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh----hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 1100000 0000000 011222222111 1245555555555422 11 11233444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
...|++++|...++++.+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 5555555555555555443 2334444445555555555555555555554443 223344444444455555555555
Q ss_pred HHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 362 QVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 362 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
..|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 54444331 223344444444444444555544444444421 11223444444444444444444444444433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-22 Score=195.10 Aligned_cols=345 Identities=11% Similarity=0.027 Sum_probs=230.9
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (554)
+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.+. .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 45567788888888888888888888887642 23455566666666666666666666665555432 22344444444
Q ss_pred HHHhcCChhhHHHHHhhcCC--C-Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 045069 249 MYARCNCMNSAYHVFNSLFH--P-DL---VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANV 322 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 322 (554)
+|.+.|++++|.+.|+++.. | +. ..+..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 44444444444444444421 1 11 2333332220000 011123335566777
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 323 WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
+.|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777766654 34566677777777777777777777776652 455677778888888888888888888887
Q ss_pred HcCCCCCHH-HHHHH------------HHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHH
Q 045069 400 EKGLNPDES-TFSAL------------LCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 400 ~~g~~p~~~-~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 461 (554)
+ ..|+.. .+..+ ...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 6 344433 34333 77888899999999999998774 343 3467888889999999999
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH------------HHHccC----
Q 045069 462 AYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN------------TYAEDG---- 523 (554)
Q Consensus 462 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g---- 523 (554)
|++.++++. .+.+...|..++.+|...|++++|...++++++..|+++..+..++. .|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999998864 35678889999999999999999999999999999999999888883 355555
Q ss_pred -ChhHHHHHHHH-HhhcCCccCC
Q 045069 524 -RWDDVMKLRDD-IVDNGLRKEA 544 (554)
Q Consensus 524 -~~~~A~~~~~~-~~~~~~~~~~ 544 (554)
+.+++.+.+++ .++..+.+.+
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCC
Confidence 66777888886 4555544433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=192.71 Aligned_cols=367 Identities=10% Similarity=-0.003 Sum_probs=268.2
Q ss_pred CCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 045069 136 GRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI 212 (554)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 212 (554)
+.+...+..+...+.+.|++++|+.+|+++.+ .+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34678899999999999999999999998764 467789999999999999999999999998864 33567888899
Q ss_pred HHcccCCccchhhHHHHHHHHhcCCCch---hHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 045069 213 SGLWEPSLLSVGQGIHGFCLKSSFDSYD---YVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGK 289 (554)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 289 (554)
..+...|+++.|...++.+.+.... +. ..+..+...+.. ..+..+...+...|++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999876432 33 555555544321 123344555666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC
Q 045069 290 ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE 369 (554)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (554)
|...++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776543 3455667777777777777777777777776654 44567777777777788888888877777652
Q ss_pred --CCc-chHHHH------------HHHHHcCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcCCchHHHHHH
Q 045069 370 --RNI-ITYNSV------------ILGLGLHGFTYQAFEFFRDIIEKGLNPD-----ESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 370 --~~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
|+. ..+..+ ...+...|++++|...|+++.+ ..|+ ...+..+...+.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 333 233333 6778888999999999998888 4455 34677788888889999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH------------HHhcC-----C
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSC------------CHIYG-----N 490 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~------------~~~~~-----~ 490 (554)
++++.+. .+.+..++..++.+|...|++++|.+.++++. .+.+...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 9888773 34567888888889999999999999888863 24455666665533 33333 6
Q ss_pred hHHHHHHHHH-HHhcCCCCch----------hHHHHHHHHHccCChhHHH
Q 045069 491 SDLAEIVAHQ-LFENDPRKGA----------YKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 491 ~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A~ 529 (554)
.+++.+.+++ +.+..|++.. .+..+..+|...|+.+++.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6778888886 6666776432 4455666777776666544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=195.01 Aligned_cols=421 Identities=10% Similarity=-0.043 Sum_probs=301.7
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHH
Q 045069 37 DPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRA 113 (554)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 113 (554)
....+..+...+.+.|++++|+..|+++. +.++.+|..+..+|.+.|++++|+..++++.+.+ +.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45677888999999999999999999865 4577889999999999999999999999999874 3356788889999
Q ss_pred hhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChh
Q 045069 114 CSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWD 187 (554)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~ 187 (554)
+...|++++|...++.+ .. .|+. ....+..+...+....|...++.+.. +........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 22 2221 22234445555666788888887754 22223445556666677766
Q ss_pred hHHHHHHHHHHCCCCCChh-hHHHHHHHcccC--------CccchhhHHHHHHHHhcCCCc------hhHHHHHHHHHHh
Q 045069 188 KSLQLFDWMLRLGKTPDEY-TLVGLISGLWEP--------SLLSVGQGIHGFCLKSSFDSY------DYVSSVLVSMYAR 252 (554)
Q Consensus 188 ~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 252 (554)
.+...+..... ..+... ....+...+... ++++.|..+++.+.+...... ..++..+...+..
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 66554443221 122222 222222222222 477888888888887654322 2356677788899
Q ss_pred cCChhhHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHH
Q 045069 253 CNCMNSAYHVFNSL--FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHG 330 (554)
Q Consensus 253 ~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 330 (554)
.|++++|...|+.. ..|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998 34567889999999999999999999999998764 3467788999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC----
Q 045069 331 YVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL---- 403 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---- 403 (554)
.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+...
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 999876 44567888999999999999999999998763 4566889999999999999999999999887421
Q ss_pred -CCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 404 -NPDESTFSALLCACCHG----------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 404 -~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
......+......+... |++++|...|++..+. .+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11112233444555565 7777777777777663 3334555666666666666666666666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-19 Score=169.54 Aligned_cols=304 Identities=10% Similarity=-0.022 Sum_probs=163.2
Q ss_pred hHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHh
Q 045069 207 TLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQ 283 (554)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~ 283 (554)
.+..+...+...|+++.|...++.+.+... .+...+..+...+...|++++|...++++ .+.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 344444455555555555555555554432 23344445555555555555555555544 22233445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---C-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHH
Q 045069 284 QGDYGKALYYFRKLNMQGKKA---D-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGL 359 (554)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (554)
.|++++|...++++.+. .| + ...+..+.... ....+..+...+...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHHH
Confidence 55555555555555433 22 1 11111110000 00001112455666666666
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 360 GIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 360 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666665542 334456666666666666666666666666631 224456666666666666666666666666553
Q ss_pred hCCCCChhHHH------------HHHHHHHhcCChHHHHHHHHhCCC--CCCh----hhHHHHHHHHHhcCChHHHHHHH
Q 045069 437 YGIQAKTEHYI------------YMVKLLGLAGNLEEAYSFIWSLPK--PVDP----AVSGALLSCCHIYGNSDLAEIVA 498 (554)
Q Consensus 437 ~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~A~~~~ 498 (554)
.+.+...+. .++..+.+.|++++|.+.++++.. +.++ ..+..+..++...|++++|...+
T Consensus 218 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 218 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 222222222 224556666777777777666431 2222 22334556666777777777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 499 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+++++.+|+++..+..++.++...|++++|.+.++++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.1e-19 Score=166.11 Aligned_cols=324 Identities=10% Similarity=-0.010 Sum_probs=239.7
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (554)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567788899999999999999999998763 3456788888899999999999999999998875 335678899999
Q ss_pred HHHhcCChhhHHHHHhhcCC--C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 045069 249 MYARCNCMNSAYHVFNSLFH--P----DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANV 322 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 322 (554)
.+...|++++|...|++... | +...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999999843 3 2333333321100 01122233344555555
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 323 WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
+.|...++.+.+.. +.+...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555543 33455666677777777777777777776553 344567777777778888888888888877
Q ss_pred HcCCCCCH-HHHH------------HHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh----hHHHHHHHHHHhcCChHHH
Q 045069 400 EKGLNPDE-STFS------------ALLCACCHGGLVNDGREIFTRMTEEYGIQAKT----EHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 400 ~~g~~p~~-~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 462 (554)
+. .|+. ..+. .+...+.+.|++++|...++++.+. .+.+. ..+..+...+...|++++|
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 74 3432 2222 2356688899999999999999874 22233 3355678889999999999
Q ss_pred HHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 463 YSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+.+++.. .+.++..+..++.++...|++++|...++++++.+|+++.....+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99998864 3567889999999999999999999999999999999999998887766543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=163.72 Aligned_cols=287 Identities=11% Similarity=-0.017 Sum_probs=210.9
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVL 313 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 313 (554)
+.+..++..+...+...|++++|.++|+++ .+.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555566666777777777777777776 23345566667777777888888888888777653 23455666677
Q ss_pred HHHhccC-CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChH
Q 045069 314 AAAAKSA-NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 314 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 389 (554)
..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777888887777654 33466777788888888888888888887653 34566777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC-------CCCChhHHHHHHHHHHhcCChHHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG-------IQAKTEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 462 (554)
+|...++++.+.. +.+...+..+...+...|++++|...+++..+... .+....++..++..+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888742 23456788888888888888888888888876411 134467888888888888888888
Q ss_pred HHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HccCChh
Q 045069 463 YSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY-AEDGRWD 526 (554)
Q Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 526 (554)
.+.+++.. .+.+...+..+..++...|++++|...++++.+.+|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88888764 3556778888888888888888898888888888888888888888877 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=163.68 Aligned_cols=267 Identities=6% Similarity=-0.089 Sum_probs=231.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 045069 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348 (554)
Q Consensus 269 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 348 (554)
.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778888889999999999999999998764 3344456667788899999999999999999875 45678888999
Q ss_pred HHHHccC-ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 045069 349 DMYSKCG-YLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424 (554)
Q Consensus 349 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 424 (554)
..+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999999853 223567777899999999999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCChhhHHHHHHHHHhcCChHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----------PVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
+|...+++..+ ..+.+...+..++..+...|++++|.+.++++.. +.....+..++.++...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 3455688899999999999999999999987631 3446788999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
|...++++.+..|+++..+..++.++.+.|++++|.+.++++.+..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999987653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-17 Score=163.40 Aligned_cols=351 Identities=11% Similarity=-0.011 Sum_probs=235.3
Q ss_pred CCCHhHHHHhhcccCC-CCcchHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHccc----CCccc
Q 045069 152 LSLIDEAIKVFDGVSD-PDLVLCNSMISGFAH----CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWE----PSLLS 222 (554)
Q Consensus 152 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~ 222 (554)
.+++++|+..|++..+ .+...+..+...|.. .+++++|.+.|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444433322 233333344444444 444444444444444332 22223333333333 34444
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHh----cCChhhHHHHHhhc-CCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 045069 223 VGQGIHGFCLKSSFDSYDYVSSVLVSMYAR----CNCMNSAYHVFNSL-FHPDLVTWSALITGYSQ----QGDYGKALYY 293 (554)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 293 (554)
+|...++...+.| +...+..|...|.. .++.++|.+.|++. ...+...+..+...|.. .+++++|...
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 5555554444433 23344455555555 56777777777665 22456667777777776 7888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc----cCChHHHHHHHh
Q 045069 294 FRKLNMQGKKADPVLIASVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK----CGYLGLGIQVFE 365 (554)
Q Consensus 294 ~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 365 (554)
|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+..+|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88877764 45566666666664 677888888888877665 34455566666766 788999999998
Q ss_pred ccCC-CCcchHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---chHHHHHHHHHhHHH
Q 045069 366 TMSE-RNIITYNSVILGLGLH-----GFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG---LVNDGREIFTRMTEE 436 (554)
Q Consensus 366 ~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 436 (554)
...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| ++++|.++|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 7764 4556777777788776 89999999999998865 4566777777777656 789999999999873
Q ss_pred hCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-
Q 045069 437 YGIQAKTEHYIYMVKLLGL----AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPR- 507 (554)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~- 507 (554)
.++..+..+...|.. .+++++|.+++++.....++..+..+...|.. .++.++|...|+++.+..|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 457788888998888 89999999999987666678888889999888 89999999999999999854
Q ss_pred --CchhHHHHHHHHHc
Q 045069 508 --KGAYKVMLSNTYAE 521 (554)
Q Consensus 508 --~~~~~~~l~~~~~~ 521 (554)
++.....++.++..
T Consensus 437 ~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTSCHH
T ss_pred cCCHHHHHHHHhcCHh
Confidence 67777777655543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-19 Score=167.70 Aligned_cols=282 Identities=11% Similarity=-0.011 Sum_probs=224.2
Q ss_pred HHhcCChhhHHH-HHhhcCC-----C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 250 YARCNCMNSAYH-VFNSLFH-----P--DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 250 ~~~~~~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
+...|++++|.+ .+++... | +...+..+...+.+.|++++|...++++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7775521 1 34567788888999999999999999988764 4466788888888999999
Q ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc-chHHH---------------HHHHHH
Q 045069 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI-ITYNS---------------VILGLG 383 (554)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~---------------l~~~~~ 383 (554)
++.|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+. ..+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999988876 45677888899999999999999999987663 222 22211 233334
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPD---ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (554)
..|++++|...++++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+..++..++..+...|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999984 444 778999999999999999999999999884 4556789999999999999999
Q ss_pred HHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHccCChhH
Q 045069 461 EAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK-----------GAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 461 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 527 (554)
+|.+.++++. .+.+...+..++.++...|++++|...++++++..|++ ...+..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999864 36678899999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHHHhh
Q 045069 528 VMKLRDDIVD 537 (554)
Q Consensus 528 A~~~~~~~~~ 537 (554)
|..++++.++
T Consensus 349 A~~~~~~~l~ 358 (368)
T 1fch_A 349 YGAADARDLS 358 (368)
T ss_dssp HHHHHTTCHH
T ss_pred HHHhHHHHHH
Confidence 9999876543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-18 Score=156.31 Aligned_cols=345 Identities=10% Similarity=0.030 Sum_probs=116.0
Q ss_pred HhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHH
Q 045069 49 ALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128 (554)
Q Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 128 (554)
-+.|++++|.+++++++.|+ +|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36677899999999886654 7889999999999999999988652 577788888888888999999999777
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhH
Q 045069 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTL 208 (554)
Q Consensus 129 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 208 (554)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77664 34577788889999999999998888864 67778888888888888888888888865 245
Q ss_pred HHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHH
Q 045069 209 VGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYG 288 (554)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 288 (554)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--------------------- 204 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--------------------- 204 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---------------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---------------------
Confidence 55555555555555544444433 133444444444444444444443333322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc--cCChHHHHHHHhc
Q 045069 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK--CGYLGLGIQVFET 366 (554)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 366 (554)
..+.....++..|.+.|.++++..+++...... +.....|+-+..+|++ .++..+.++.|..
T Consensus 205 ---------------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 205 ---------------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred ---------------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 222223334444444444444444444444322 2233444444444443 3444555555543
Q ss_pred cCC--------CCcchHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 367 MSE--------RNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 367 ~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
-.. .+...|..+...|.+.++++.|... |.+. ...-+...|.-++ .+..+.+--.+...-..+
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~---~kv~n~elyYkai~fyl~-- 340 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYLE-- 340 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHH---HHCSSTHHHHHHHHHHHH--
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHH---hchhHHHHHHHHHHHHHh--
Confidence 332 2456788888888888888887763 3442 1112233333333 333333322222222212
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
..| ...+.|+.++...=+...+.+++++.
T Consensus 341 -~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 341 -FKP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp -HCG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred -cCH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 122 23555555665555666666666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-16 Score=158.62 Aligned_cols=423 Identities=9% Similarity=0.015 Sum_probs=274.1
Q ss_pred HHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CC
Q 045069 92 FKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PD 169 (554)
Q Consensus 92 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 169 (554)
|+...+.. +-+...|..++.. .+.|+++.|..+++.+.+.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444442 2255677777774 66788888888888887754 33667788888888888888888888888766 66
Q ss_pred cchHHHHHHHH-HhCCChhhHHH----HHHHHHH-CCCCCC-hhhHHHHHHHccc---------CCccchhhHHHHHHHH
Q 045069 170 LVLCNSMISGF-AHCGFWDKSLQ----LFDWMLR-LGKTPD-EYTLVGLISGLWE---------PSLLSVGQGIHGFCLK 233 (554)
Q Consensus 170 ~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 233 (554)
+..|...+... ...|+.+.|.+ +|++... .|..|+ ...|...+..... .|+++.|..+++..++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66666665422 34567776655 5555443 244433 2333333332211 3455555555555554
Q ss_pred hcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------hCC---CCC
Q 045069 234 SSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLN------MQG---KKA 304 (554)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~------~~~---~~~ 304 (554)
.........|..........|. .+...++. .+.+++..|..++.++. +.. +.|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~----------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI----------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH----------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch----------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 1111111122211111000000 00000110 12345666766666532 111 234
Q ss_pred CH--------HHHHHHHHHHhcc----CCc----chhHHHHHHHHHhcCCchHHHHHHHHHHHHc-------cCChH---
Q 045069 305 DP--------VLIASVLAAAAKS----ANV----WPGAVIHGYVIQHGFELSVMVSSALVDMYSK-------CGYLG--- 358 (554)
Q Consensus 305 ~~--------~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~--- 358 (554)
+. ..|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 31 2344333322211 222 25667888887764 4567788888887775 68887
Q ss_pred ----HHHHHHhccCC---C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHH
Q 045069 359 ----LGIQVFETMSE---R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 359 ----~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~ 428 (554)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++++ ..|+. ..|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998763 4 456888899999999999999999999999 56653 478888888889999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKL-LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+|++..+. .+.+...+...+.. +...|+.++|.++|++.. .+.++..|..++..+.+.|+.++|..+|++++...
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999763 22334444433332 346899999999999864 25678899999999999999999999999999987
Q ss_pred CCCch----hHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 506 PRKGA----YKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 506 p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
|.++. ++...+......|+.+.+.++.+++.+.-+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 76665 777778888889999999999999987654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-19 Score=162.83 Aligned_cols=374 Identities=12% Similarity=0.093 Sum_probs=132.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHH
Q 045069 116 ENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (554)
+.|++++|.++++.+ +++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677777777666 22347777777777777777777777543 4555777777777777777777776655
Q ss_pred HHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHH
Q 045069 196 MLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWS 275 (554)
Q Consensus 196 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (554)
.++. .+++.+.+.++.++.+.|++..+.++++ .|+..++..+.+.|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 5442 3445666667777777777776666653 245557777777777777777777777665 3567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
.++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCC
Confidence 7777777777777777777766 2566677777777777777766443332 1122222345666677777
Q ss_pred ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHhcCCchHH
Q 045069 356 YLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNP------DESTFSALLCACCHGGLVND 425 (554)
Q Consensus 356 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p------~~~~~~~ll~~~~~~~~~~~ 425 (554)
++++|..+++.... .....|+-|.-.|++-+ +++..+.++..... .++| +...|.-+...|...++++.
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 77777777666553 23345555655555542 33333333322221 1111 12235555555666666666
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH---HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 426 GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE---EAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
|....-+- +|+..-....-+...+..+.+ +|+.++- ...|..++.|+.++...=|...+..++++.-
T Consensus 301 A~~tm~~h------~~~a~~~~~f~~~~~kv~n~elyYkai~fyl----~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 301 AIITMMNH------PTDAWKEGQFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHS------TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH----HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHhC------ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 55432221 111111111111111222111 1222211 1122334444444444444444444444321
Q ss_pred hc-----------CCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 503 EN-----------DPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 503 ~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.. .-++..+...|-++|...++++.=+.-++
T Consensus 371 ~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 371 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp CTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 11 34566777778888888888776555444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-15 Score=156.77 Aligned_cols=449 Identities=14% Similarity=0.086 Sum_probs=310.1
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH---------
Q 045069 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKN--------- 94 (554)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------- 94 (554)
...+.....| ..++.++|+|.+.|...++-. .+++.+-+ .-=..++.-||...|+..|.-.|++
T Consensus 860 p~LE~~~~~g-~~~~~~hnalakiyid~n~np--e~fL~~n~----~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~ 932 (1630)
T 1xi4_A 860 PWLEARIHEG-CEEPATHNALAKIYIDSNNNP--ERFLRENP----YYDSRVVGKYCEKRDPHLACVAYERGQCDLELIN 932 (1630)
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHhccCCCH--HHHhhccC----cccHHHHHHHHHhcCcchHHHHhcccCCcHHHHH
Confidence 3344444445 578999999999999877432 33333211 1112233334444444443333332
Q ss_pred --------------hHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcC--CCCHhHHHHHHHHHHcCCCHhHH
Q 045069 95 --------------LLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGL--GRDSITSSALVTAYSKLSLIDEA 158 (554)
Q Consensus 95 --------------m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 158 (554)
+.++ -|...|..++.- +-+-=+++.++.....+ ..++.-....+.+|...|.+.+|
T Consensus 933 vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~Ea 1004 (1630)
T 1xi4_A 933 VCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNEL 1004 (1630)
T ss_pred HHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHH
Confidence 1111 133344443311 11112233344333221 22444455678888899999999
Q ss_pred HHhhcccCC-CC-----cchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHH
Q 045069 159 IKVFDGVSD-PD-----LVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCL 232 (554)
Q Consensus 159 ~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 232 (554)
++++++..- |+ ...-+.++.+..+. +..+..++..+.... + ...+...+...|.+++|..+|+...
T Consensus 1005 ieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1005 IELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999988763 22 24456677766666 556666666665421 1 3336667788999999999998752
Q ss_pred HhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 045069 233 KSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASV 312 (554)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (554)
......+.+ +...+++++|.++.+++. ++.+|..+..++...|++++|...|.+. -|...|..+
T Consensus 1077 -----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eV 1140 (1630)
T 1xi4_A 1077 -----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 1140 (1630)
T ss_pred -----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHH
Confidence 111111222 337788999999998774 4678889999999999999999999663 567788889
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 392 (554)
+.++.+.|+++++.+++....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|.
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999877765 33333345888999999988655443 3566677788899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
.+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|......+ .
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--i 1277 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--V 1277 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--h
Confidence 999885 37889999999999999999999877 34578888999999999999999877653 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc--cCChhHHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE--DGRWDDVMKLRDD 534 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 534 (554)
.++..+..++..|.+.|.+++|+.+++.++..+|.+...+..|+.+|.+ -++..++.++|..
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999988888888777765 3556666666553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-15 Score=153.79 Aligned_cols=441 Identities=10% Similarity=0.033 Sum_probs=289.3
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCC-CC-----CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHH
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTP-QR-----SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYA 108 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 108 (554)
..+|.--+..+++|...|.+.+|+++++++. .| +....|.++....+. +..+..+..+..... ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 3455555667777778888888888887765 22 224556666666665 445555555544321 133
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhh
Q 045069 109 CITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188 (554)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 188 (554)
.+...+...|.+++|..+|+... ......+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHH
Confidence 46667777888888888887742 11222222322 5677888888887664 45677788888888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC
Q 045069 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH 268 (554)
Q Consensus 189 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (554)
|++.|.+. -|...|..++.++.+.|+++++.+.+....+.. +++.+.+.++.+|++.++++...... ..
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NG 1192 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hC
Confidence 88888653 466777888888888888888888888777765 33333445888888888887544443 34
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 045069 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348 (554)
Q Consensus 269 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 348 (554)
++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 56666777888888888888888888874 37888888888888888888888765 3457788888
Q ss_pred HHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhc--CCchHH
Q 045069 349 DMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCH--GGLVND 425 (554)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~--~~~~~~ 425 (554)
.+|...|++..|...... ...+...+..++..|.+.|.+++|+.+++..+. +.|... .|.-+...+++ .++..+
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 888888888888877664 334455666888888888888888888877765 333332 45445555544 344445
Q ss_pred HHHHHHHhHHHhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhC--------------CCCCChhhHHHHHHHH
Q 045069 426 GREIFTRMTEEYGIQA------KTEHYIYMVKLLGLAGNLEEAYSFIWSL--------------PKPVDPAVSGALLSCC 485 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~l~~~~ 485 (554)
+.+.|.. +.+++| +...|..++..|.+.|+++.|....-+- ....++..+...+..|
T Consensus 1335 hlk~f~~---rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1335 HLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHH---hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHH
Confidence 5555443 223444 4667888888888888888888433222 1344566666655555
Q ss_pred HhcC---------------ChHHHHHHHHHHHhc-----------CCCCchhHHHHHHHHHccCCh
Q 045069 486 HIYG---------------NSDLAEIVAHQLFEN-----------DPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 486 ~~~~---------------~~~~A~~~~~~~~~~-----------~p~~~~~~~~l~~~~~~~g~~ 525 (554)
.... |.+++.+++.+.-.. .-++..+...+.+.|...+++
T Consensus 1412 l~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~ 1477 (1630)
T 1xi4_A 1412 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 1477 (1630)
T ss_pred HhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccch
Confidence 5544 566665555521100 234445555566666655554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-16 Score=155.10 Aligned_cols=352 Identities=14% Similarity=0.033 Sum_probs=292.7
Q ss_pred CCcchHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHccc----CCccchhhHHHHHHHHhcCCCc
Q 045069 168 PDLVLCNSMISGFAH----CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWE----PSLLSVGQGIHGFCLKSSFDSY 239 (554)
Q Consensus 168 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 239 (554)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455566666677776 899999999999998764 45566667666766 889999999999988875 5
Q ss_pred hhHHHHHHHHHHh----cCChhhHHHHHhhcC-CCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 045069 240 DYVSSVLVSMYAR----CNCMNSAYHVFNSLF-HPDLVTWSALITGYSQ----QGDYGKALYYFRKLNMQGKKADPVLIA 310 (554)
Q Consensus 240 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 310 (554)
...+..|...|.. .+++++|...|++.. ..++..+..+...|.. .+++++|...|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888 789999999999873 3467778888888887 789999999999998875 667777
Q ss_pred HHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc----cCChHHHHHHHhccCC-CCcchHHHHHHH
Q 045069 311 SVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK----CGYLGLGIQVFETMSE-RNIITYNSVILG 381 (554)
Q Consensus 311 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 381 (554)
.+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|..+|+...+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888877 899999999999998876 45567777777876 7899999999998764 556677778888
Q ss_pred HHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 382 LGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG-----GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 382 ~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 877 899999999999998864 556777777777776 8999999999999874 3 45677888888
Q ss_pred HHhcC---ChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----
Q 045069 453 LGLAG---NLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE---- 521 (554)
Q Consensus 453 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 521 (554)
|...| +.++|++++++.....++..+..+...|.. .+++++|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 889999999997666788999999999998 899999999999999864 57889999999998
Q ss_pred cCChhHHHHHHHHHhhcCC
Q 045069 522 DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~~~~~ 540 (554)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=163.55 Aligned_cols=262 Identities=11% Similarity=-0.057 Sum_probs=213.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888899999999999999888764 3467788888888999999999999999888875 445778888999
Q ss_pred HHHccCChHHHHHHHhccCC--CC-----------cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 045069 350 MYSKCGYLGLGIQVFETMSE--RN-----------IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN-PDESTFSALLC 415 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 415 (554)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 21 223345678899999999999999999995322 15778999999
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
.+...|++++|...++++.+. .+.+..++..++.+|...|++++|++.++++. .+.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999884 45668899999999999999999999999864 35678899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 494 AEIVAHQLFENDPR------------KGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 494 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
|...++++++..|+ +..++..++.++...|+.+.|.++.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999766 4678999999999999999999887763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-17 Score=146.69 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=212.5
Q ss_pred HHHHhcCChhhHHHHHhhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcc
Q 045069 248 SMYARCNCMNSAYHVFNSLFHPDL----VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVW 323 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 323 (554)
+-....|++..|+..++.....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 345567888888888887644332 3445677889999999998876654 23566678888888888889999
Q ss_pred hhHHHHHHHHHhcCCc-hHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 045069 324 PGAVIHGYVIQHGFEL-SVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG 402 (554)
Q Consensus 324 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 402 (554)
.|.+.++.+...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999988876434 566677778899999999999999998 556778889999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhh
Q 045069 403 LNPDESTF---SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAV 477 (554)
Q Consensus 403 ~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 477 (554)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++. .+.++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4664321 22334455679999999999999984 66788899999999999999999999999864 4678889
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH
Q 045069 478 SGALLSCCHIYGNSDL-AEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
+..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 67899999999999987654 34445555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=155.26 Aligned_cols=261 Identities=9% Similarity=-0.095 Sum_probs=194.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMY 351 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (554)
..+..+...+...|++++|..+++++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 334455555666666666666666665542 2244455555566666666666666666665553 33455666666667
Q ss_pred HccCChHHHHHHHhccCC--CC-cchHHHH--------------HH-HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045069 352 SKCGYLGLGIQVFETMSE--RN-IITYNSV--------------IL-GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSAL 413 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 413 (554)
...|++++|.+.++++.+ |+ ...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777776666542 21 2222222 22 3677889999999999999853 3367789999
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 491 (554)
...+...|++++|...++++.+. .+.+..++..++..+...|++++|.+.++++. .+.+...+..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999884 45567889999999999999999999999864 356788899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 492 DLAEIVAHQLFENDPR------------KGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++|...++++.+..|. ++..+..++.++.+.|++++|.+++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999998 788999999999999999999999987654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-16 Score=154.58 Aligned_cols=407 Identities=9% Similarity=0.009 Sum_probs=280.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHH
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALV 146 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 146 (554)
.+..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|+.++... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778999998 47899999999999999986 33356678999999999999999999999998764 5777777766
Q ss_pred HH-HHcCCCHhHHHH----hhcccCC------CCcchHHHHHHHHHh---------CCChhhHHHHHHHHHHCCCCCCh-
Q 045069 147 TA-YSKLSLIDEAIK----VFDGVSD------PDLVLCNSMISGFAH---------CGFWDKSLQLFDWMLRLGKTPDE- 205 (554)
Q Consensus 147 ~~-~~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~- 205 (554)
.. ....|+.+.|.+ +|+.... ++...|...+....+ .|+++.|..+|++.... |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 53 335677777665 6655421 345677777776554 68899999999998873 332
Q ss_pred --hhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhh----------c---CCCC
Q 045069 206 --YTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNS----------L---FHPD 270 (554)
Q Consensus 206 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~---~~~~ 270 (554)
..|..........+. ..+ ..++. ...++++.|..++.. . ..|+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 222221110000000 000 00110 012233444433332 1 1222
Q ss_pred --------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCcc----
Q 045069 271 --------LVTWSALITGYSQQ----GDY----GKALYYFRKLNMQGKKADPVLIASVLAAAAK-------SANVW---- 323 (554)
Q Consensus 271 --------~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~g~~~---- 323 (554)
...|...+...... ++. .++..+|++..... +-+...|......+.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 23455544332222 232 37777888887652 3456667766666664 68887
Q ss_pred ---hhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc--chHHHHHHHHHcCCChHHHHHHHH
Q 045069 324 ---PGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI--ITYNSVILGLGLHGFTYQAFEFFR 396 (554)
Q Consensus 324 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 396 (554)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+. ..|...+..+.+.|++++|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7888888887632345678888999999999999999999998763 432 478888888888999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHH-HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--C
Q 045069 397 DIIEKGLNPD-ESTFSALLCA-CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--P 472 (554)
Q Consensus 397 ~m~~~g~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 472 (554)
+..+. .|+ ...|...... +...|++++|..+|++..+. .+.+...+..++..+.+.|+.++|..+|++... +
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99884 333 3333332222 33689999999999999885 345678899999999999999999999998642 2
Q ss_pred CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 473 VD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 473 ~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22 337778888888899999999999999999874
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=157.58 Aligned_cols=385 Identities=8% Similarity=-0.050 Sum_probs=198.1
Q ss_pred CHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----------C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHC-----C
Q 045069 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSD-----------P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRL-----G 200 (554)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 200 (554)
....|+.|...+...|+.++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888888999888888865421 2 3456788888888888888888888876542 0
Q ss_pred -CCCC-hhhHHHHHHHcc--cCCccchhhHHHHHHHHhcCCCchhHHHHHHHH---HHhcCChhhHHHHHhhc---CCCC
Q 045069 201 -KTPD-EYTLVGLISGLW--EPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSM---YARCNCMNSAYHVFNSL---FHPD 270 (554)
Q Consensus 201 -~~p~-~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~---~~~~ 270 (554)
..++ ..++.....++. ..+++++|...|+...+..+. ++..+..+..+ +...++.++|++.+++. .+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 0111 223333322222 234566666666665554422 22223222222 23344555555555443 2223
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHH
Q 045069 271 LVTWSALITGYSQ----QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSA 346 (554)
Q Consensus 271 ~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (554)
..++..+...+.. .|++++|...+++..... +.+...+..+...+...|+++.|...++...+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 3344333333322 234455555555554432 2233444555555555555555555555555443 223334444
Q ss_pred HHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVND 425 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 425 (554)
+..+|...+....+. . .. .........+.++.|...+++..+. .|+ ..++..+...+...|++++
T Consensus 287 lg~~y~~~~~~~~~~-----~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL-----R-EN------GMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhH-----H-HH------HHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHH
Confidence 443332211100000 0 00 0000001122356778888887773 343 3467778888889999999
Q ss_pred HHHHHHHhHHHhCCCCCh--hHHHHHHHH-HHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 426 GREIFTRMTEEYGIQAKT--EHYIYMVKL-LGLAGNLEEAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
|...|++..+. ..++.. ..+..+... +...|+.++|++.+++.. ..|+..... +....+..++++.
T Consensus 353 A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~ 422 (472)
T 4g1t_A 353 AEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHH
Confidence 99999888763 322221 123333332 346788999998887753 233322221 2234566778888
Q ss_pred HhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeee
Q 045069 502 FENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549 (554)
Q Consensus 502 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~ 549 (554)
++.+|+++.++..|+.+|...|++++|++.|+++++.+...+...+|+
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 889999999999999999999999999999999999888777777775
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-17 Score=154.23 Aligned_cols=261 Identities=12% Similarity=-0.023 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHH
Q 045069 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTA 148 (554)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 148 (554)
...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..+ .+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3445555555566666666666666655542 22344555555555555555555555555555432 234444444455
Q ss_pred HHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChh-hHHH---------------HH
Q 045069 149 YSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEY-TLVG---------------LI 212 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~---------------ll 212 (554)
+...|++++|+..| +++.... |+.. .+.. .+
T Consensus 142 ~~~~g~~~~A~~~~-------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 142 FTNESLQRQACEIL-------------------------------RDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp HHHTTCHHHHHHHH-------------------------------HHHHHTS--TTTGGGCC---------------CTT
T ss_pred HHHcCCHHHHHHHH-------------------------------HHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 55555555555444 4444321 1111 0000 11
Q ss_pred HHcccCCccchhhHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHH
Q 045069 213 SGLWEPSLLSVGQGIHGFCLKSSFDS-YDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYG 288 (554)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 288 (554)
..+...|+++.|...++.+.+..... +..++..+...|...|++++|...|++. .+.+..+|..+...+...|+++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHH
Confidence 11113444444444444444433221 3444555555555555555555555554 2234455556666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc----------hHHHHHHHHHHHHccCChH
Q 045069 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL----------SVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~ 358 (554)
+|...++++.+.. +.+...+..+..++...|++++|...++.+.+..... ...+|..+..+|...|+.+
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 6666666655432 2234455555555555666666666555554432111 1345555555555556555
Q ss_pred HHHHHHh
Q 045069 359 LGIQVFE 365 (554)
Q Consensus 359 ~A~~~~~ 365 (554)
+|..+++
T Consensus 348 ~A~~~~~ 354 (368)
T 1fch_A 348 AYGAADA 354 (368)
T ss_dssp GHHHHHT
T ss_pred hHHHhHH
Confidence 5555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-17 Score=147.78 Aligned_cols=248 Identities=8% Similarity=-0.012 Sum_probs=204.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADP--VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
++-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999998876433 3443 3556678899999999999876654 24678889999999999999
Q ss_pred ChHHHHHHHhccC----CCC-cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 045069 356 YLGLGIQVFETMS----ERN-IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 356 ~~~~A~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
+.++|++.++++. .|+ ...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 254 44666777899999999999999987 456778999999999999999999999
Q ss_pred HHhHHHhCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 431 TRMTEEYGIQAKTEHY---IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.++..+..+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999884 3554322 223445556699999999999975 47788899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHccCChhH-HHHHHHHHhhcCC
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDD-VMKLRDDIVDNGL 540 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 540 (554)
|+++.++..++.++...|+.++ +.++++++++..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999976 5789999987664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-17 Score=153.75 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHH
Q 045069 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILG 381 (554)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 381 (554)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999876 55788899999999999999999999998763 456789999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDES-----------TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
|...|++++|...++++.+. .|+.. .+..+...+...|++++|...++++.+.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999983 34432 233457788999999999999999988521112688999999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
..|...|++++|++.++++. .+.+..++..++.++...|++++|+..++++++..|+++..+..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999864 3667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 045069 529 MKLRDDIVDNGL 540 (554)
Q Consensus 529 ~~~~~~~~~~~~ 540 (554)
.+.++++++..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-15 Score=145.63 Aligned_cols=299 Identities=9% Similarity=-0.035 Sum_probs=167.7
Q ss_pred CChhhHHHHHHHHHHCCCCCChh-hHHHHHHH---cccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH----hcCC
Q 045069 184 GFWDKSLQLFDWMLRLGKTPDEY-TLVGLISG---LWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA----RCNC 255 (554)
Q Consensus 184 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 255 (554)
+++++|++.|++..+. .|+.. .+..+... +...++.+.|.+.++...+... .+..++..+...+. ..|+
T Consensus 152 ~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhH
Confidence 4567777777776654 34332 22222222 3345666677777776666542 23444444444444 4567
Q ss_pred hhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHH
Q 045069 256 MNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYV 332 (554)
Q Consensus 256 ~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 332 (554)
.++|.+.+++. .+.+..++..+...|...|++++|...+++..+.. +-+...+..+..++...+.. .
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~---------~ 298 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQ---------V 298 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH---------h
Confidence 88999999876 44667789999999999999999999999998763 22444555555444321100 0
Q ss_pred HHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-
Q 045069 333 IQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES- 408 (554)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~- 408 (554)
... ............+..+.|...|+... ..+..++..+...+...|++++|+..|++..+. .|+..
T Consensus 299 ~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~ 369 (472)
T 4g1t_A 299 MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVA 369 (472)
T ss_dssp HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHH
T ss_pred hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChH
Confidence 000 00001111112233566777777654 345678899999999999999999999999984 44433
Q ss_pred ---HHHHHHH-HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHH
Q 045069 409 ---TFSALLC-ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALL 482 (554)
Q Consensus 409 ---~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 482 (554)
.+..+.. .....|++++|+..|++..+ +.|+........ ..+.++++... .+.++.+|..++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2222322 24578999999999999876 556543332222 22333343321 366788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
.++...|++++|++.|+++++..|.+|.....++
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999999999999988887766554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-18 Score=170.63 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHhccCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHH
Q 045069 38 PFYATKLVRLYALNNVLPSARILFDKTP-------QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACI 110 (554)
Q Consensus 38 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 110 (554)
-.+||+||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999997643 799999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCh-hhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----CCcchHHHHHHHHHhCC
Q 045069 111 TRACSENSDL-PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-----PDLVLCNSMISGFAHCG 184 (554)
Q Consensus 111 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~ 184 (554)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++...++...+.. +.+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999999888777666666666555443 22344555666666655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=137.62 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
...|..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...++...+......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 3456666666777777777777777766655 5555555566666666666666666655544321000
Q ss_pred HHccCChHHHHHHHhccCCCC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 045069 351 YSKCGYLGLGIQVFETMSERN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 426 (554)
++ ...+..+...+...|++++|...++++.+ ..|+.. .+...|++++|
T Consensus 73 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKE 124 (258)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHH
Confidence 01 23455555666666666666666666666 334432 34445667777
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...++++.. ..+.+...+..++..+...|++++|.+.++++. .+.+...+..++.++...|++++|...++++++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777665 233345666677777777777777777777653 3456677777777788888888888888888888
Q ss_pred CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 505 DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 505 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.|+++..+..++.++...|++++|.+.++++.+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-15 Score=136.92 Aligned_cols=275 Identities=10% Similarity=-0.055 Sum_probs=172.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHH
Q 045069 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVT 147 (554)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 147 (554)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44556677777788888888888888877753 22555666777777777777777777777776642 24555666666
Q ss_pred HHHcCCCHhHHHHhhcccCC--CC-cchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHH-HH-HcccCCccc
Q 045069 148 AYSKLSLIDEAIKVFDGVSD--PD-LVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGL-IS-GLWEPSLLS 222 (554)
Q Consensus 148 ~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~-~~~~~~~~~ 222 (554)
.+...|++++|++.+++..+ |+ ...+..+... .|+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666666655433 11 1111111000 0011111111 11 245556666
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045069 223 VGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNM 299 (554)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 299 (554)
.|...++.+.+... .+...+..+...|...|++++|.+.+++. .+.+..++..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666665542 24566667777777777777777777766 334566777778888888888888888887766
Q ss_pred CCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHccCChHHHHHHHhccC
Q 045069 300 QGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL-----------SVMVSSALVDMYSKCGYLGLGIQVFETMS 368 (554)
Q Consensus 300 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 368 (554)
.. +.+...+..+..++...|++++|...++.+.+..... +..++..+..++.+.|+.++|..+++...
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 3345667777777777888888888877776654331 56677777778888888888887777554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=163.14 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=123.9
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhc-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSL-------FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLI 309 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 309 (554)
..-..+|++||++|++.|++++|.++|+.| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568899999999999999999999665 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCc-chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CCcchHHHHHHHHH
Q 045069 310 ASVLAAAAKSANV-WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RNIITYNSVILGLG 383 (554)
Q Consensus 310 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~ 383 (554)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.- +.+.+...|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999986 78999999999999999999999999877776544444444333331 12445556667777
Q ss_pred cCC
Q 045069 384 LHG 386 (554)
Q Consensus 384 ~~~ 386 (554)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-16 Score=134.28 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=155.7
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 045069 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSAL 413 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 413 (554)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667778888889999999999999998764 34567888889999999999999999999984 454 5578888
Q ss_pred HHHHhcC-----------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 045069 414 LCACCHG-----------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGA 480 (554)
Q Consensus 414 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 480 (554)
...+... |++++|...+++..+. -+.+...+..+..+|...|++++|++.+++.. . .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 8889998 9999999999999883 34457888999999999999999999998863 3 77888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+..++...|++++|+..++++++.+|+++..+..++.++...|++++|++.+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999988754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=141.96 Aligned_cols=375 Identities=9% Similarity=-0.010 Sum_probs=196.5
Q ss_pred HhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH---hHHHHhhcccCCCCcchHHHHHHHHHhCC-----
Q 045069 113 ACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI---DEAIKVFDGVSDPDLVLCNSMISGFAHCG----- 184 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~----- 184 (554)
.+.+.|++++|.++|+...+.|. ...+..|...|...|+. ++|+..|++..+.++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 33444555555555555554441 22222333334444555 56666666555445555555555444443
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhh----HH
Q 045069 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS----AY 260 (554)
Q Consensus 185 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~ 260 (554)
++++|+..|++..+.|... .+..+...+...+....+...++...+.....+......|...|...+.++. +.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 5667777777776654222 3444444444433333333333222222212234445556666666664433 33
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC
Q 045069 261 HVFNSLFHPDLVTWSALITGYSQQG---DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF 337 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 337 (554)
.+++.....++..+..|...|...| +.++|+..|++..+.| .++...+
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~---------------------------- 216 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV---------------------------- 216 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH----------------------------
Confidence 3444445555556667777777777 6777777777666655 2222222
Q ss_pred CchHHHHHHHHHHHHcc----CChHHHHHHHhccCCCCcchHHHHHHH-H--HcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 045069 338 ELSVMVSSALVDMYSKC----GYLGLGIQVFETMSERNIITYNSVILG-L--GLHGFTYQAFEFFRDIIEKGLNPDESTF 410 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 410 (554)
..+..+|... +++++|...|+.....+...+..+... + ...+++++|...|++..+.| +...+
T Consensus 217 -------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 217 -------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp -------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred -------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 2333333322 455555555555442233444445444 3 34677788888888877765 55566
Q ss_pred HHHHHHHhcCC-----chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHH
Q 045069 411 SALLCACCHGG-----LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEEAYSFIWSLPKPVDPAVSGAL 481 (554)
Q Consensus 411 ~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l 481 (554)
..+...|. .| ++++|..+|++.. +-++..+..+...|.. ..+.++|.+++++.....++.....|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 66666665 34 7888888888774 3456667777777765 34888888888887656666677777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 482 LSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 482 ~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
...|.. ..+.++|...++++.+..+.........+......++..+|.++.++..+.
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 777654 457888888888888876544333333322333455777888888777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=135.76 Aligned_cols=234 Identities=11% Similarity=-0.007 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 045069 240 DYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK--KAD----PVLIA 310 (554)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~ 310 (554)
...+..+...+...|++++|...|++. . .+...|..+..++...|++++|...+++..+... .++ ...+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457788899999999999999999887 4 7788999999999999999999999999876421 112 24444
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHH
Q 045069 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 311 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 390 (554)
.+...+...|++++|...++...+.. |+ ...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHH
Confidence 45555555555555555555544432 22 123455566777
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 391 AFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
|...++++.. ..|+. ..+..+...+...|++++|...+++..+. .+.+..++..++..+...|++++|.+.+++.
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888887777 34443 36777788888888888888888888773 4456778888888888888888888888876
Q ss_pred C--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCchhHHHHHHH
Q 045069 470 P--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND------PRKGAYKVMLSNT 518 (554)
Q Consensus 470 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 518 (554)
. .+.+...+..+..++...|++++|...++++.+.. |++..+...+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4 35567888888899999999999999999999987 8777777766543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-15 Score=133.87 Aligned_cols=242 Identities=9% Similarity=-0.089 Sum_probs=187.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKK---ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
...|++++|+..++++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457788888888888765321 134567777778888888888888888887765 446778888888999999999
Q ss_pred HHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 359 LGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 359 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
+|...|++..+ .+...+..+...+...|++++|...++++.+ ..|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988763 4567888999999999999999999999998 456655555555556777999999999988887
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP-V-----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
. .+++...+. ++..+...++.++|.+.+++.... + +...+..++..+...|++++|...++++++.+|++.
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 445555544 677778888899999999886532 2 257788899999999999999999999999999876
Q ss_pred hhHHHHHHHHHccCChhHHHHHH
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLR 532 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~ 532 (554)
..+ +.++...|++++|++.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 554 55778889999998876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=125.24 Aligned_cols=225 Identities=12% Similarity=-0.049 Sum_probs=148.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSS 345 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (554)
++.++..+...+...|++++|...|++..+. -+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4556666667777777777777777776652 233344444444444 455555555555444433
Q ss_pred HHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH-- 419 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 419 (554)
+...+..+...|.. .+++++|+..|++..+.+ +..++..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444445555555 666777777777766653 55666666666666
Q ss_pred --CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cC
Q 045069 420 --GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YG 489 (554)
Q Consensus 420 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 489 (554)
.+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++.....++..+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 77777777777777663 3 45566666677766 77777777777775544556677777777777 78
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcCC
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 540 (554)
++++|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888887755 6677778888887 8888888888888877654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-14 Score=124.20 Aligned_cols=198 Identities=6% Similarity=-0.105 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 417 (554)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44555666666666666666666665542 344566666777777777777777777777642 22455677777777
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
...|++++|.++++++.+. +..| +...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7778888888777777651 2334 35666777777777788888887777753 244567777777778888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...++++.+..|.+...+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 8888888888888888888888888888888888888888877653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=127.71 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344455555556666666666666665542 234456666666667777777777777766642 2245566667777
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777663 34456666777777777777777777776653 244566677777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...++++.+..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 7777777777777777777777777777777777777777776543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=134.73 Aligned_cols=271 Identities=11% Similarity=-0.034 Sum_probs=189.3
Q ss_pred ChhhHHHHHhhcCC-CChhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHH
Q 045069 255 CMNSAYHVFNSLFH-PDLVTWSALITGYSQQGDYG---KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHG 330 (554)
Q Consensus 255 ~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 330 (554)
+.++|...|++... .+...+..|...|...+..+ ++.+.+......|. ......+...+...+.++.+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 44455555555421 23335555555555544322 34444444444442 2344455566666666666666544
Q ss_pred HHHHhcCCchHHHHHHHHHHHHccC---ChHHHHHHHhccCC---CCcchHHHHHHHHHcC----CChHHHHHHHHHHHH
Q 045069 331 YVIQHGFELSVMVSSALVDMYSKCG---YLGLGIQVFETMSE---RNIITYNSVILGLGLH----GFTYQAFEFFRDIIE 400 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~ 400 (554)
.+.+.-...++..+..|..+|...| +.++|++.|+...+ ++...+..+...|... +++++|...|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 4444333344447788888888888 88999999987663 3333346677777654 79999999999987
Q ss_pred cCCCCCHHHHHHHHHH-H--hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCC
Q 045069 401 KGLNPDESTFSALLCA-C--CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG-----NLEEAYSFIWSLPKP 472 (554)
Q Consensus 401 ~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 472 (554)
.| +...+..+... + ...+++++|..+|++..+. | +...+..+...|. .| ++++|.++|++.. +
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 44455555555 3 5689999999999999874 4 6777888888887 55 9999999999988 8
Q ss_pred CChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcCC
Q 045069 473 VDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 540 (554)
.++.....|...|.. ..+.++|...|+++.+. .++.....|+.+|.. ..+.++|...+++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888888888887776 34999999999998874 567788889888875 4589999999999988775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-13 Score=120.69 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=136.2
Q ss_pred HHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhc
Q 045069 244 SVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD--PVLIASVLAAAAK 318 (554)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~ 318 (554)
......+...|++++|...|++. .+.+...+..+..++...|++++|...+++..+.+..|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34455566667777777777665 223444677777777777777777777777766321111 2235555566666
Q ss_pred cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHH
Q 045069 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFF 395 (554)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~ 395 (554)
.|++++|...++...+.. +.+..++..+...|...|++++|...|++..+ | +...+..+...+...+++++|...|
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665543 23344555555566666666666666655543 1 2223333331222223555555555
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhcCCc---hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 045069 396 RDIIEKGLNPD-ESTFSALLCACCHGGL---VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK 471 (554)
Q Consensus 396 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 471 (554)
+++.+. .|+ ...+..+...+...|+ +++|...+++..+...-.|+.. -.
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~------------------------ 218 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD------------------------ 218 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH------------------------
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH------------------------
Confidence 555442 222 2333333333333333 4444444444333211111110 00
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
.....+..+...+...|++++|...++++++.+|+++.....+.......+
T Consensus 219 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 219 -ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 012456678888889999999999999999999999998888876655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-13 Score=121.50 Aligned_cols=203 Identities=13% Similarity=0.020 Sum_probs=145.6
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCC
Q 045069 310 ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHG 386 (554)
Q Consensus 310 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 386 (554)
..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333344444444444444444444432 23445556666666666666666666665542 34456677777788888
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
++++|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888877434554 446778888888999999999999988874 344577888889999999999999999
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 466 IWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 466 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
++++. .+.+...+..+...+...|+.++|.+.++++.+..|+++.....+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 98864 356677788888889999999999999999999999988766544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=120.08 Aligned_cols=199 Identities=10% Similarity=-0.016 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 415 (554)
.+...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3455666667777777777777777776552 344567777777777888888888888877742 234557777777
Q ss_pred HHhcC-CchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 045069 416 ACCHG-GLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 416 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 491 (554)
.+... |++++|...++++.+. +..|+ ...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 8888888888887662 33333 5667777788888888888888887753 244577777888888888888
Q ss_pred HHHHHHHHHHHhcCC-CCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 492 DLAEIVAHQLFENDP-RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++|...++++.+..| .++..+..++.++...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 888888888888888 888888878778888888888888888877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-14 Score=118.82 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=146.1
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHH
Q 045069 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM 449 (554)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 449 (554)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+...+.+.|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888888999999999999999999884 454 558888999999999999999999998874 45567778888
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 045069 450 VKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 527 (554)
...+...+++++|.+.+.+.. .+.+...+..+..++...|++++|++.++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998864 366788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCc
Q 045069 528 VMKLRDDIVDNGLR 541 (554)
Q Consensus 528 A~~~~~~~~~~~~~ 541 (554)
|++.++++++..+.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-14 Score=125.92 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=143.6
Q ss_pred HHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHH
Q 045069 314 AAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 390 (554)
..+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHH
Confidence 33334444444444444443322 22344555556666666666666666665442 345566777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.++++.
T Consensus 110 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 110 AKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888753 335667888888899999999999999998874 45567788889999999999999999998864
Q ss_pred --CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 471 --KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+.+...+..+..++...|++++|...++++.+..|+++..+..++.+....
T Consensus 187 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 3556788899999999999999999999999999999999888876554433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-14 Score=126.15 Aligned_cols=222 Identities=10% Similarity=-0.040 Sum_probs=154.0
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcc----hHHHHHHHHHcCCChHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNII----TYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~ 390 (554)
...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++..+ ++.. .|..+...+...|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 33333333333333333332 22333555566666666777777666665543 2222 36777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
|+..+++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.+.++++.
T Consensus 93 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 93 AIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888742 224457888888888888888888888888662 34456667777734444568888888888764
Q ss_pred --CCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 471 --KPVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFEND---PRK-----GAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+.+...+..+..++...|+ +++|...++++.+.. |+. ...+..++.+|...|++++|.++++++++
T Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 24557777778888888888 888999999998884 442 26788899999999999999999999998
Q ss_pred cCCcc
Q 045069 538 NGLRK 542 (554)
Q Consensus 538 ~~~~~ 542 (554)
..+..
T Consensus 250 ~~p~~ 254 (272)
T 3u4t_A 250 LDPTN 254 (272)
T ss_dssp HCTTC
T ss_pred cCccH
Confidence 76543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-13 Score=120.51 Aligned_cols=232 Identities=10% Similarity=-0.083 Sum_probs=167.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFH-PDLVTWSALITGYSQ----QGDYGKALYYFRKLNMQGKKADPVLIASVL 313 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 313 (554)
+...+..+...|...|++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 566778888999999999999999998844 456778888999999 999999999999998876 667777777
Q ss_pred HHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChH
Q 045069 314 AAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 314 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 389 (554)
..+.. .+++++|...++...+.+ +...+..+...|... ....++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCHH
Confidence 77777 777777777777766654 333444444444330 00056666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCH----GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEE 461 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 461 (554)
+|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+...|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 6666666666644 44556666666665 77777888777777663 2 45666777777777 788888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCch
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
|.+.+++.....++..+..+...+.. .+++++|...++++.+..|++..
T Consensus 205 A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 205 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88887776444446677777777877 88888899999888888776543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-13 Score=117.18 Aligned_cols=208 Identities=13% Similarity=0.028 Sum_probs=148.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34455555666666666666666666555432 222344555555
Q ss_pred HHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchH
Q 045069 350 MYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLH-GFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVN 424 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 424 (554)
.|...|++++|...++++.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 55566666666666655442 2445666677777788 888888888888877433444 457788888888999999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--P-VDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
+|...++++.+. .+.+...+..++..+...|++++|.+.++++.. + .+...+..+...+...|+.+.|..+++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999988774 344577888888899999999999999888642 4 56777777778888999999999999999
Q ss_pred HhcCCCCchhHHHH
Q 045069 502 FENDPRKGAYKVML 515 (554)
Q Consensus 502 ~~~~p~~~~~~~~l 515 (554)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999988876655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=129.23 Aligned_cols=244 Identities=8% Similarity=0.033 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-cchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN-VWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
..|..+...+...|++++|+..+++..... +-+...|..+..++...|+ +++|...++++.+.. +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 445566666666777777777777666543 2234556666666666665 777777777766655 3456677777777
Q ss_pred HHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc-CCchHH
Q 045069 351 YSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCH-GGLVND 425 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~~~~~~ 425 (554)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 7777888888877777663 34567777777888888888888888888884 44 45577778777777 555466
Q ss_pred H-----HHHHHHhHHHhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------
Q 045069 426 G-----REIFTRMTEEYGIQAKTEHYIYMVKLLGLAG--NLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYG-------- 489 (554)
Q Consensus 426 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~-------- 489 (554)
| +..+++.... -+-+...|..+..++...| ++++|++.+.++.. +.+...+..++.++.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 4777777663 3445677888888888877 58888888877632 456667778888887764
Q ss_pred -ChHHHHHHHHHH-HhcCCCCchhHHHHHHHHHc
Q 045069 490 -NSDLAEIVAHQL-FENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 490 -~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 521 (554)
..++|+.+++++ .+.+|....+|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999999999888776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=136.64 Aligned_cols=262 Identities=11% Similarity=-0.016 Sum_probs=167.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCcchhHHHHHHHHHh----c-CCchHHHHHH
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADP----VLIASVLAAAAKSANVWPGAVIHGYVIQH----G-FELSVMVSSA 346 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 346 (554)
.+...+...|++++|...|+++.+.+.. +. ..+..+...+...|+++.|...+++..+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444455555666666555555544211 11 24445555555556666666555554432 1 1223445566
Q ss_pred HHHHHHccCChHHHHHHHhccCC-----C----CcchHHHHHHHHHcCCC-----------------hHHHHHHHHHHHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSE-----R----NIITYNSVILGLGLHGF-----------------TYQAFEFFRDIIE 400 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 400 (554)
+...|...|++++|...+++..+ . ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 66666666776666666665442 1 12355666666777777 7777777766554
Q ss_pred c----CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 045069 401 K----GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK 471 (554)
Q Consensus 401 ~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 471 (554)
. +-.|. ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++...
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11121 236777777888888888888888887653111112 23677788888888898888888877531
Q ss_pred ----C----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 472 ----P----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 472 ----~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
. ....++..+...+...|++++|...++++++..+. ....+..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 12456777888888999999999999998887432 245788889999999999999999998875
Q ss_pred c
Q 045069 538 N 538 (554)
Q Consensus 538 ~ 538 (554)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=7.8e-14 Score=131.42 Aligned_cols=228 Identities=10% Similarity=0.021 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC-hHHHHHHHhccCC---CCcchHHHHHHHH
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY-LGLGIQVFETMSE---RNIITYNSVILGL 382 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 382 (554)
..|..+...+...|++++|...++.+++.. +-+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999886 5567889999999999997 9999999998873 4567899999999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh-cCChH
Q 045069 383 GLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL-AGNLE 460 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 460 (554)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++.+. -+.+...|+.+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 455 4568999999999999999999999999884 44568899999999999 66657
Q ss_pred HH-----HHHHHhCC--CCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC--------
Q 045069 461 EA-----YSFIWSLP--KPVDPAVSGALLSCCHIYG--NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG-------- 523 (554)
Q Consensus 461 ~A-----~~~~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 523 (554)
+| ++.+++.. .+.+...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 47777753 4667889999999998888 689999999998 889999999999999999875
Q ss_pred -ChhHHHHHHHHH-hhcCC
Q 045069 524 -RWDDVMKLRDDI-VDNGL 540 (554)
Q Consensus 524 -~~~~A~~~~~~~-~~~~~ 540 (554)
.+++|+++++++ .+.++
T Consensus 332 ~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 359999999998 66543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=133.48 Aligned_cols=289 Identities=15% Similarity=0.039 Sum_probs=144.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcC---CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLF---HPD----LVTWSALITGYSQQGDYGKALYYFRKLNMQ----GKKAD-P 306 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~ 306 (554)
....+......+...|++++|...|++.. +.+ ..++..+...+...|++++|...+++.... +..|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33445556666777777777777776651 122 245666666777777777777777665432 11111 2
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHhcC-----CchHHHHHHHHHHHHccCC--------------------hHHHH
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGF-----ELSVMVSSALVDMYSKCGY--------------------LGLGI 361 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~ 361 (554)
..+..+...+...|+++.|...++...+... .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455555566666666666666666543210 1113355555666666666 55555
Q ss_pred HHHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhcCCchHHHH
Q 045069 362 QVFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPD----ESTFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 362 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~ 427 (554)
..+++..+ ++ ..++..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 55554321 11 1234445555555555555555555554311 0111 114445555555555555555
Q ss_pred HHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCC----hhhHHHHHHHHHhcCChHHHH
Q 045069 428 EIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVD----PAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~A~ 495 (554)
..+++..+...-.++ ..++..+...|...|++++|.+.+++... ..+ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555554432100011 33444555555555555555555544321 111 334444555555555555555
Q ss_pred HHHHHHHhcCCCCc------hhHHHHHHHHHccCChhH
Q 045069 496 IVAHQLFENDPRKG------AYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 496 ~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~ 527 (554)
..++++.+..+... ..+..++.++...|+...
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 55555555544442 233444444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=118.23 Aligned_cols=193 Identities=17% Similarity=0.070 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34445555555555556666665555555432 2233444444445555555555555555554443 233444555555
Q ss_pred HHHcc-----------CChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045069 350 MYSKC-----------GYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415 (554)
Q Consensus 350 ~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 415 (554)
++... |++++|+..|++..+ | +...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55544 444444444444331 2 22334444444444444555555554444433 34444444444
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
++...|++++|...|++..+. .+.+...+..+..++.+.|++++|.+.+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444445555555555444442 222334444444444444444444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=128.47 Aligned_cols=263 Identities=12% Similarity=0.030 Sum_probs=172.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCcchhHHHHHHHHHh----cC-CchHHHHHHHH
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQGKKAD---PVLIASVLAAAAKSANVWPGAVIHGYVIQH----GF-ELSVMVSSALV 348 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 348 (554)
....+...|++++|...++++.+...... ...+..+...+...|+++.|...++...+. +. +....++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555566666666555554421100 234445555555556666666555554322 11 12244566666
Q ss_pred HHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCC--------------------hHHHHHHHHHHH
Q 045069 349 DMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGF--------------------TYQAFEFFRDII 399 (554)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~ 399 (554)
..|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 677777777777776665442 12 2256666667777777 777777777765
Q ss_pred Hc----CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 400 EK----GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 400 ~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
+. +..|. ..++..+...+...|++++|...+++..+...-.++ ..++..++..+...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11121 235777788888899999999999887653111111 3367888888999999999999988753
Q ss_pred C----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 471 K----PVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK------GAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 471 ~----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
. ..+ ..++..+...+...|++++|...++++++..|.. ...+..++.+|.+.|++++|.++++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 111 4567778888999999999999999998874332 4578889999999999999999999998
Q ss_pred hcC
Q 045069 537 DNG 539 (554)
Q Consensus 537 ~~~ 539 (554)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=134.35 Aligned_cols=193 Identities=8% Similarity=-0.108 Sum_probs=162.4
Q ss_pred chHHHHHHHHHHHHccCCh-HHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYL-GLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL 414 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 414 (554)
.+...+..+...|...|++ ++|++.|++..+ | +...|..+...|...|++++|...|++..+ ..|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666677777777777 777777776552 3 356788888888888999999999999988 568877888899
Q ss_pred HHHhcC---------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhCC--CC---
Q 045069 415 CACCHG---------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA--------GNLEEAYSFIWSLP--KP--- 472 (554)
Q Consensus 415 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~--~~--- 472 (554)
..+... |++++|...+++..+. .+.+...+..+..+|... |++++|++.+++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999999884 455688889999999988 99999999998864 24
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
.++..|..+..++...|++++|.+.++++++.+|+++..+..++.++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 588899999999999999999999999999999999999999999999999999999765443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=123.15 Aligned_cols=219 Identities=11% Similarity=-0.023 Sum_probs=179.3
Q ss_pred hccCCcchhHHHHHHHHHhcC---CchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGF---ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 390 (554)
...|++++|...++.+.+... +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345788999999999987632 23577889999999999999999999998763 456789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999952 234678999999999999999999999999874 4554445555556677899999999997653
Q ss_pred --CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 471 --KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR----KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.+++.. ...++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|.+.++++++..+
T Consensus 172 ~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 233333 344777788888999999999999888653 368899999999999999999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=131.30 Aligned_cols=267 Identities=9% Similarity=-0.036 Sum_probs=178.6
Q ss_pred CChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCChhhHHHHHhhcCC---------CC
Q 045069 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSY---DYVSSVLVSMYARCNCMNSAYHVFNSLFH---------PD 270 (554)
Q Consensus 203 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~ 270 (554)
+....+......+...|+++.|...++.+.+...... ..++..+...|...|++++|...+++... ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3344555566677788888888888888877643321 24667777788888888888887776511 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------cchh
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KAD----PVLIASVLAAAAKSAN--------------------VWPG 325 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 325 (554)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566777788888888888888877654311 011 3366667777777888 7788
Q ss_pred HHHHHHHHHh----cC-CchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCChHHH
Q 045069 326 AVIHGYVIQH----GF-ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGFTYQA 391 (554)
Q Consensus 326 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 391 (554)
...++...+. +. +....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777766532 11 12244677777888888888888888877652 22 12677777788888888888
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHH
Q 045069 392 FEFFRDIIEKGL-NPD----ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 392 ~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 462 (554)
...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887765210 011 335677777888888888888888877653111112 45667777888888888888
Q ss_pred HHHHHhC
Q 045069 463 YSFIWSL 469 (554)
Q Consensus 463 ~~~~~~~ 469 (554)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-13 Score=127.44 Aligned_cols=224 Identities=7% Similarity=-0.064 Sum_probs=150.0
Q ss_pred HHHhccCCcchhHHHHHHHHHh----cCCc-hHHHHHHHHHHHHccCChHHHHHHHhccCC-----CC-----cchHHHH
Q 045069 314 AAAAKSANVWPGAVIHGYVIQH----GFEL-SVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RN-----IITYNSV 378 (554)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 378 (554)
..+...|+++.|...++...+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556666666666665542 1111 345666677777777777777776665542 11 2356677
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHH---hCC-CCChhHHHHH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGL-NPDE----STFSALLCACCHGGLVNDGREIFTRMTEE---YGI-QAKTEHYIYM 449 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l 449 (554)
...|...|++++|...+++..+... .++. .++..+...|...|++++|...+++..+- .+. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7778888888888888877765210 1121 26777888888888888888888887651 022 2335667888
Q ss_pred HHHHHhcCChHHHHHHHHhCCC-------CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPK-------PVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
...|.+.|++++|.+.+++... +.....+..+...+...|+ .++|..++++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 8888888888888888877531 1112234556677777888 77777777766 33455566788899999
Q ss_pred HccCChhHHHHHHHHHhhc
Q 045069 520 AEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~ 538 (554)
...|++++|.+++++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-10 Score=111.21 Aligned_cols=414 Identities=11% Similarity=0.022 Sum_probs=258.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCC---hhhHHHHHHHHHHhc-CCCCHhHH
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSD---LPGLRFVHGGAIVSG-LGRDSITS 142 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 142 (554)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ ++.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46778888888888888888888888888876 44455567777777777777 888888888877664 23677777
Q ss_pred HHHHHHHHcCCCH--------hHHHHhhcccC------CC-CcchHHHHHHHHHh---------CCChhhHHHHHHHHHH
Q 045069 143 SALVTAYSKLSLI--------DEAIKVFDGVS------DP-DLVLCNSMISGFAH---------CGFWDKSLQLFDWMLR 198 (554)
Q Consensus 143 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~ 198 (554)
...+.-..+.++. +...++|+... .+ +...|...+..... .++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7666654444432 22335555422 12 23456666654332 2345667777777664
Q ss_pred CCCCCChhhHH---HHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhh-------cC-
Q 045069 199 LGKTPDEYTLV---GLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNS-------LF- 267 (554)
Q Consensus 199 ~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~- 267 (554)
.....-..+|. ..-... +...+.+++... ..+++.|...+.. +.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~----~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV----NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH----CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CccHHHHHHHHHHHHHHHhc----CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhh
Confidence 21111111221 111111 111111111110 0111122222211 10
Q ss_pred ---C----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 045069 268 ---H----------P--D------LVTWSALITGYSQQG-------DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKS 319 (554)
Q Consensus 268 ---~----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 319 (554)
. | + ...|...+.---..+ ..+++..+|++.... .+-....|...+.-+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Confidence 0 0 0 133444444322222 134456677777665 344666777777777788
Q ss_pred CCcchhH-HHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-------------CC------------cc
Q 045069 320 ANVWPGA-VIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-------------RN------------II 373 (554)
Q Consensus 320 g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~ 373 (554)
|+.+.|. .+++...... +.+...+-..+....+.|+++.|.++|+.+.+ |+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888996 9999988653 55667777888888899999999999987763 31 23
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-CCchHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCACCH-GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 451 (554)
.|...+....+.|+.+.|..+|.+.++. +. +....|...+..-.+ .++++.|..+|+...+. .+.+...+...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 5777777777889999999999999885 21 122333332222223 35689999999999885 4556667778888
Q ss_pred HHHhcCChHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 452 LLGLAGNLEEAYSFIWSLPK-PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
.....|+.+.|..+|++... .+ ....|...+..-.+.|+.+.+..+.+++.+..|+++.+
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 88889999999999998653 22 34567777777788999999999999999999987643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=124.09 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh------c-
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQ-------GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH------G- 336 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~- 336 (554)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455667777778888888888888777652 11222344555555666666666666666655443 1
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLC 415 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 415 (554)
.+....++..+...|...|++++|...|++..+ +.+.... +-.|+ ...+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC-CCChHHHHHHHHHHH
Confidence 122344455555555566666555555554321 0000000 11111 123445555
Q ss_pred HHhcCCchHHHHHHHHHhHHHh-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCC----
Q 045069 416 ACCHGGLVNDGREIFTRMTEEY-----GIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----------PVD---- 474 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~---- 474 (554)
.+...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.++++.. +..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 5555555555555555554420 0011 133445555555556666666555554321 001
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 475 --PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 475 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
...+..+...+...+.+.++...+++.....|..+..+..++.+|.+.|++++|.++++++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333445566777777888888888888899999999999999999999999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.4e-13 Score=127.16 Aligned_cols=262 Identities=14% Similarity=0.046 Sum_probs=177.6
Q ss_pred HHHHHHHhcCChhhHHHHHhhcC---CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 045069 245 VLVSMYARCNCMNSAYHVFNSLF---HPDL----VTWSALITGYSQQGDYGKALYYFRKLNMQ----GK-KADPVLIASV 312 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l 312 (554)
.+...+...|++++|...|++.. +.+. ..|..+...|...|++++|...+++..+. +. ......+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 34455666666666666666651 1222 35666666677777777777777665432 11 1123455566
Q ss_pred HHHHhccCCcchhHHHHHHHHHh----c-CCchHHHHHHHHHHHHccCC-----------------hHHHHHHHhccCC-
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQH----G-FELSVMVSSALVDMYSKCGY-----------------LGLGIQVFETMSE- 369 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~- 369 (554)
...+...|+++.|...+++..+. + .+....++..+...|...|+ +++|.+.+++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66677777777777777665543 1 12234567777778888888 7888777766542
Q ss_pred ----C----CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 370 ----R----NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPD----ESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 370 ----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
. ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 123677788888889999999999988876311 112 126778888899999999999999887763
Q ss_pred hCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 437 YGIQA----KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 437 ~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
..-.. ...++..+...|...|++++|.+++++... .....++..+...+...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11111 146778888999999999999999987641 112447778888999999999999999999887
Q ss_pred CC
Q 045069 505 DP 506 (554)
Q Consensus 505 ~p 506 (554)
.+
T Consensus 373 ~~ 374 (411)
T 4a1s_A 373 AX 374 (411)
T ss_dssp CC
T ss_pred Hh
Confidence 54
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=109.68 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=104.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (554)
+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 333344444444444444444332 1123344555555555555555555555555542 2334455555666666666
Q ss_pred ChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 458 NLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 458 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
++++|.+.++++. .+.+...+..++..+...|++++|...++++.+..|.++..+..++.++...|++++|.++++++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665542 24456677777888888888899999999998888988899999999999999999999999998
Q ss_pred hhcCCcc
Q 045069 536 VDNGLRK 542 (554)
Q Consensus 536 ~~~~~~~ 542 (554)
.+..+..
T Consensus 171 ~~~~~~~ 177 (186)
T 3as5_A 171 NELDEGA 177 (186)
T ss_dssp HHHHHCC
T ss_pred HHcCCCc
Confidence 8765433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-12 Score=107.77 Aligned_cols=168 Identities=13% Similarity=0.041 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
++.+|..+...|...|++++|++.|++..+ .+..++..+...|.+.|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456788888888888888888888887663 355678888889999999999999999988852 2345577778888
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+...++++.|...+.+..+. .+.+...+..+...|.+.|++++|++.+++.. .+.++.++..++.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998873 45567888999999999999999999998864 467788999999999999999999
Q ss_pred HHHHHHHHhcCCCCch
Q 045069 495 EIVAHQLFENDPRKGA 510 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~ 510 (554)
+..++++++.+|+++.
T Consensus 161 ~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 161 VKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCccCHH
Confidence 9999999999987643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-12 Score=132.26 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=142.3
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 372 IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ..+|..+..+|.+.|++++|+..|++..+. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 35677888888888889999999998888 4565 558888999999999999999999998873 334578889999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
.+|.+.|++++|++.+++.. .+.+...+..+..++...|++++|+..|+++++.+|+++..+..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998864 3667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 045069 529 MKLRDDIVDN 538 (554)
Q Consensus 529 ~~~~~~~~~~ 538 (554)
.+.++++++.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=114.55 Aligned_cols=219 Identities=8% Similarity=-0.019 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------ccCCc-------chhHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 288 GKALYYFRKLNMQGKKADPVLIASVLAAAA-------KSANV-------WPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
++|...|++..... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888777642 334556666655554 24665 6777777777663113345567777777777
Q ss_pred cCChHHHHHHHhccCC--CC-cc-hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCchHHHHH
Q 045069 354 CGYLGLGIQVFETMSE--RN-II-TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC-CHGGLVNDGRE 428 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~ 428 (554)
.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776653 32 22 57777777777777777777777777642 12233443333222 12577777777
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PV--DPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
+|++..+. .+.+...+..++..+.+.|+.++|..+|++... +| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777663 334566677777777777777777777776532 22 34466666666677777777777777777
Q ss_pred hcCCCCch
Q 045069 503 ENDPRKGA 510 (554)
Q Consensus 503 ~~~p~~~~ 510 (554)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 77776543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-10 Score=113.03 Aligned_cols=438 Identities=10% Similarity=-0.030 Sum_probs=273.9
Q ss_pred CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC---HhHHH
Q 045069 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL---IDEAI 159 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 159 (554)
....+.+..|+..+..+. -|..+|..++..+.+.+.++.+..+++.+...- +.....|...+..-.+.|. ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 334556666666666643 478889899998888889999999999988773 4567778888888788888 88999
Q ss_pred HhhcccCC-----CCcchHHHHHHHHHhCCCh--------hhHHHHHHHHHH-CCC-CCCh-hhHHHHHHHcc-------
Q 045069 160 KVFDGVSD-----PDLVLCNSMISGFAHCGFW--------DKSLQLFDWMLR-LGK-TPDE-YTLVGLISGLW------- 216 (554)
Q Consensus 160 ~~~~~~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~------- 216 (554)
.+|++... |++..|...+....+.++. +.+.++|+.... .|. .|+. ..|...+.-..
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99887654 5666777776655555543 223356665443 355 4443 33333332211
Q ss_pred --cCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045069 217 --EPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYF 294 (554)
Q Consensus 217 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 294 (554)
..++.+.+..+|..++......-..+|......-...+ ...+.++ +.- ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~---------------~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRH---------------IGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHH---------------HHH--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHH---------------HHH--hhHHHHHHHHHH
Confidence 11233445555555553211111222222111110000 0001111 110 112334444444
Q ss_pred HHHHhC--CCC---------------C-----CH---HHHHHHHHHHhccC-C------cchhHHHHHHHHHhcCCchHH
Q 045069 295 RKLNMQ--GKK---------------A-----DP---VLIASVLAAAAKSA-N------VWPGAVIHGYVIQHGFELSVM 342 (554)
Q Consensus 295 ~~m~~~--~~~---------------~-----~~---~~~~~l~~~~~~~g-~------~~~a~~~~~~~~~~~~~~~~~ 342 (554)
.++... ++. | +. ..|...+.---..+ . .+.+..+|++.+... +-...
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 443211 110 1 11 22333332221211 1 123445677776653 45677
Q ss_pred HHHHHHHHHHccCChHHHH-HHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC---------CCC---
Q 045069 343 VSSALVDMYSKCGYLGLGI-QVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL---------NPD--- 406 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------~p~--- 406 (554)
.|-..+..+...|+.++|. .+|++... | +...|...+...-+.|+++.|.++|+++.+... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888899999996 99988763 4 444567788888899999999999999987410 142
Q ss_pred ---------HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhCCC--CCC
Q 045069 407 ---------ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA-GNLEEAYSFIWSLPK--PVD 474 (554)
Q Consensus 407 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~~~ 474 (554)
...|...+....+.|+.+.|..+|.+..+. ...+....|...+..-.+. ++.+.|.++|+.... +.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777777777889999999999999873 1222344555444444444 458999999988642 557
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR---KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
+..|...+......|+.+.|..+|++++...|+ ....+...+..-.+.|+.+.+.++.+++.+.-+..
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 777778888888899999999999999999873 45677778888889999999999999999876643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=118.01 Aligned_cols=228 Identities=10% Similarity=0.018 Sum_probs=166.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc------CCchHHHHH
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQ----GKKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG------FELSVMVSS 345 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~ 345 (554)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+.+..+.. .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777777777777777643 1111 22456666677777777777777777765431 112345677
Q ss_pred HHHHHHHccCChHHHHHHHhccCC-----CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSE-----RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEK----GLNPD-ESTFS 411 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~ 411 (554)
.+..+|...|++++|...|++..+ ++. .++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888899999999888887652 221 36788888999999999999999998872 23243 45788
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHh---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCC-ChhhHHHHHHH
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEY---GIQAKTEHYIYMVKLLGLAGN---LEEAYSFIWSLPKPV-DPAVSGALLSC 484 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 484 (554)
.+...+.+.|++++|...+++..+.. +.+.....+..+...+...|+ .++|+.++++....+ ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999876631 122223345678888889999 899999999886433 34567788899
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 045069 485 CHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~ 504 (554)
|...|++++|...++++.+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=119.59 Aligned_cols=261 Identities=15% Similarity=0.048 Sum_probs=160.5
Q ss_pred HHHHHhcCChhhHHHHHhhc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 045069 247 VSMYARCNCMNSAYHVFNSL---FHPD----LVTWSALITGYSQQGDYGKALYYFRKLNMQ----GKKA-DPVLIASVLA 314 (554)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~ 314 (554)
...+...|++++|...|++. .+.+ ...+..+...+...|++++|...+++.... +..| ....+..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33445555555555555554 1111 234555555566666666666666554322 1111 1234455555
Q ss_pred HHhccCCcchhHHHHHHHHHhcC-----CchHHHHHHHHHHHHccCC--------------------hHHHHHHHhccCC
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGF-----ELSVMVSSALVDMYSKCGY--------------------LGLGIQVFETMSE 369 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~ 369 (554)
.+...|+++.|...+++..+... .....++..+...|...|+ +++|...+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543210 1113356666667777777 6777666665431
Q ss_pred -----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 370 -----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPD----ESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 370 -----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
++ ...+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 23566677778888888888888888765210 111 22677788888889999999999888765
Q ss_pred HhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 436 EYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 436 ~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
...-.++ ..++..+...+...|++++|.+.+++... .. ...++..+...+...|++++|...++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3111112 55677888889999999999998887531 11 244677888889999999999999999988
Q ss_pred cCCC
Q 045069 504 NDPR 507 (554)
Q Consensus 504 ~~p~ 507 (554)
..+.
T Consensus 332 ~~~~ 335 (338)
T 3ro2_A 332 ISRE 335 (338)
T ss_dssp C---
T ss_pred HHHh
Confidence 7653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=108.27 Aligned_cols=191 Identities=9% Similarity=-0.049 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC----CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE----RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALL 414 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll 414 (554)
++..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 345555556666666666666666665441 3444444455566666666666666666665 34443 2555566
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCCC-CC---ChhhHHHHHH
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKT-------EHYIYMVKLLGLAGNLEEAYSFIWSLPK-PV---DPAVSGALLS 483 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~ 483 (554)
..+...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.++++.. .| +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666666666666666666552 22223 3345555555555666666666555432 22 2344444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++... +...++++....+.++..+... .....|.+++|+.++++..+..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 44332 2333444444444443333222 233344559999999999887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-11 Score=108.10 Aligned_cols=178 Identities=9% Similarity=0.102 Sum_probs=84.7
Q ss_pred HHHHHHHhccCC---C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhcCCchHHHHHHHH
Q 045069 358 GLGIQVFETMSE---R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-S-TFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 358 ~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++|..+|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. . .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554332 2 223455555555555555555555555555 33321 1 45555555555555555555555
Q ss_pred HhHHHhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---C
Q 045069 432 RMTEEYGIQAKTEHYIYMVKLLG-LAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN---D 505 (554)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 505 (554)
+..+. .+++...|...+.... ..|+.++|.++|++.. .+.++..|..++..+...|++++|..+|+++++. .
T Consensus 159 ~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 55441 1223333332222211 2455555555555542 1334455555555555555555555555555553 2
Q ss_pred CC-CchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 506 PR-KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 506 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
|+ ...++..++..+.+.|+.++|..+++++.+..
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 21 33445555555555555555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.6e-12 Score=118.82 Aligned_cols=222 Identities=7% Similarity=-0.090 Sum_probs=148.3
Q ss_pred HHhccCCcchhHHHHHHHHHhcC-----CchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CC-----cchHHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGF-----ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RN-----IITYNSVI 379 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~ 379 (554)
.+...|+++.|...+++..+... .....++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 44566777777777766654311 11345666677777777777777777665541 11 23566777
Q ss_pred HHHHcCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHH---hCCCCChhHHHHHHH
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEK----GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEE---YGIQAKTEHYIYMVK 451 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~ 451 (554)
..|...|++++|...+++..+. +-.+. ..++..+...|...|++++|...+++..+- .+.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7788888888888888877652 11111 235777888888888888888888887651 122333667778888
Q ss_pred HHHhcCChHHHHHHHHhCC----C---CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 452 LLGLAGNLEEAYSFIWSLP----K---PVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
++.+.|++++|.+++++.. . +.....+..+...+...++ +++|+..+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 8888999999988887742 1 1122334455555666777 77777777662 2234455677789999999
Q ss_pred cCChhHHHHHHHHHhh
Q 045069 522 DGRWDDVMKLRDDIVD 537 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~~ 537 (554)
.|++++|.++++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-10 Score=107.86 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=95.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCC-------C----CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--C--CHH
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSE-------R----NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN--P--DES 408 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~ 408 (554)
+..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+.... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 33444455555555555555554331 1 0123334445555566666666666655542111 0 123
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCCCC-CC-----hhh
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYI-----YMVKLLGLAGNLEEAYSFIWSLPKP-VD-----PAV 477 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~ 477 (554)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|..++++.... +. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455555556666666666666666544211111111111 1223355666666666666655321 10 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+..+...+...|++++|...++++.+..+. ....+..++.++...|++++|.+.+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666554221 112445556666666666666666666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-12 Score=121.70 Aligned_cols=179 Identities=9% Similarity=-0.052 Sum_probs=157.4
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHcCCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHH
Q 045069 357 LGLGIQVFETMSE---RNIITYNSVILGLGLHGFT-YQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 357 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++++...++.... .+...+..+...+...|++ ++|+..|++..+. .|+ ...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555556654432 4567888899999999999 9999999999984 455 6689999999999999999999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc--------CChH
Q 045069 432 RMTEEYGIQAKTEHYIYMVKLLGLA---------GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY--------GNSD 492 (554)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------~~~~ 492 (554)
+..+ ..|+...+..+..+|... |++++|++.++++. .+.+...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9976 467788999999999999 99999999999964 466788999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 493 LAEIVAHQLFENDP---RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 493 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+|+..++++++.+| .++..+..++.+|...|++++|++.++++.+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-11 Score=103.85 Aligned_cols=205 Identities=10% Similarity=-0.024 Sum_probs=161.8
Q ss_pred CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHH
Q 045069 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVIL 380 (554)
Q Consensus 304 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 380 (554)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888899999999999999999999987546777777799999999999999999998763 3 4467888999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC---hhHHHHH
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPD-E-------STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK---TEHYIYM 449 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 449 (554)
.+...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 3577788888999999999999999976 3454 6778888
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 450 VKLLGLAGNL--EEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 450 ~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
..+|...|+. ++|..+. +.+...+.... ....+.+++|+..++++++.+|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 3322221 22333343332 345577999999999999999999998888876543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=98.69 Aligned_cols=168 Identities=11% Similarity=0.013 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 417 (554)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788889999999999999999875 355678888999999999999999999999852 33567888899999
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999884 45678888999999999999999999998864 3567788999999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 045069 496 IVAHQLFENDPRKGAY 511 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~ 511 (554)
..++++.+..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9.3e-11 Score=106.49 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHh-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEY-----G-IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----------- 471 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 471 (554)
++..+...+...|++++|...+++..+.. + .+....++..+...|...|++++|.++++++..
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 45555555566666666666665554420 0 111234455556666666666666666555320
Q ss_pred CCChhhHHHHHHHHHhcC------ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 472 PVDPAVSGALLSCCHIYG------NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
......+..+.......+ .+..+...++......|.....+..++.+|...|++++|.++++++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111222222222222222 2333333444333344666678888999999999999999999888763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=112.34 Aligned_cols=238 Identities=11% Similarity=0.023 Sum_probs=142.2
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFH-----------PDLVTWSALITGYSQQGDYGKALYYFRKLNMQ------G 301 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~ 301 (554)
...++..+...+...|++++|...++++.+ ....++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345666777778888888888888777622 12355777888888999999999998888754 2
Q ss_pred CCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc------C-CchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc
Q 045069 302 KKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG------F-ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNII 373 (554)
Q Consensus 302 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 373 (554)
..| ....+..+...+...|++++|...++++.+.. . +.....+..+...+...|++++|...|
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--------- 176 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY--------- 176 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH---------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH---------
Confidence 222 34577788888899999999999988876541 1 122334445555555555555555444
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHh------CCC
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEK------GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEY------GIQ 440 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~ 440 (554)
+++.+. +..|. ..++..+...+...|++++|...++++.+.. ...
T Consensus 177 ----------------------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 177 ----------------------QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ----------------------HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ----------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 444332 11222 2245666666667777777777776665420 011
Q ss_pred CC-------hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 441 AK-------TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 441 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+. ...+..+...+...+.+.+|...+..... +....++..+..+|...|++++|...++++++..|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11122223333444555555556655542 345667888899999999999999999999887664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-09 Score=104.45 Aligned_cols=226 Identities=11% Similarity=0.055 Sum_probs=148.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCcchhHHHHHHHHHhcC-----C-chHHHHHHH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGK-KAD----PVLIASVLAAAAKSANVWPGAVIHGYVIQHGF-----E-LSVMVSSAL 347 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l 347 (554)
..+...|++++|...+++..+... .++ ..++..+...+...|+++.|...+++..+... . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344555666666666665543210 111 23445555556666666666666655543210 1 124556677
Q ss_pred HHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEK----GLNPDESTFSALL 414 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll 414 (554)
..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 7777777777777777766542 12 235667777888888888888888887761 1222255788888
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCC---CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCC-CChhhHHHHHHHHHh
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGI---QAKTEHYIYMVKLLGLAGN---LEEAYSFIWSLPKP-VDPAVSGALLSCCHI 487 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (554)
..+.+.|++++|...+++..+...- +.....+..+...+...|+ ..+|+.++++.... .....+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 8999999999999999988774221 1123445666667777888 88899998886542 234456678888999
Q ss_pred cCChHHHHHHHHHHHhc
Q 045069 488 YGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~ 504 (554)
.|++++|...++++.+.
T Consensus 349 ~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-10 Score=96.80 Aligned_cols=184 Identities=11% Similarity=-0.035 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCC--CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSE--RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE----STFS 411 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~ 411 (554)
..+..+...+.+.|++++|...|+.+.+ |+. ..+..+..++.+.|++++|+..|+++.+. .|+. .++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444555667777777777777776652 332 34566666777777777777777777763 3332 1333
Q ss_pred HHHHHHhc------------------CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 045069 412 ALLCACCH------------------GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPV 473 (554)
Q Consensus 412 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 473 (554)
.+..++.. .|++++|...|+++.+. .|-+............-.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~-------------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL-------------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH--------------
Confidence 34444432 45566666666666542 222222222111110000000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
......+...+.+.|++++|+..++++++..|+++ ..+..++.+|.+.|++++|++.++.+...++....
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01113456778899999999999999999999986 56889999999999999999999999887765544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-09 Score=94.41 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=141.3
Q ss_pred HHHHhcCChhhHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhH
Q 045069 248 SMYARCNCMNSAYHVFNSLFHPD-LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA 326 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 326 (554)
+-..-.|.+..++.-...+.+.+ ...-.-+.++|...|+++.. ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 33455677777776555553222 22222344666666666531 11233333333333332 221 56
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC-----CcchHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 045069 327 VIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER-----NIITYNSVILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
..+++..+.+ +++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 6666666554 344444456777777778888887777766332 334566667777777888888888877776
Q ss_pred CCCC-----CHHHHHHHHHHH--hc--CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-
Q 045069 402 GLNP-----DESTFSALLCAC--CH--GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK- 471 (554)
Q Consensus 402 g~~p-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 471 (554)
..| +..+...+..++ .. .+++.+|..+|+++.++ .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456 244555555442 22 33777777777777553 34422223333367777777777777765422
Q ss_pred -----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 472 -----------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 472 -----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
+.++.++..++......|+ +|.++++++.+..|+++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 4456666566555555665 677777777777777766543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-09 Score=96.10 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=167.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCCh
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (554)
++-..-.|++..++.-..++ ..........-+.+++...|++.... .-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc--
Confidence 34455678898888743332 21222334444567888888876532 2234444444444433 322
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 358 GLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 358 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
|+..|++... ++..++..+..++...|++++|++++.+.++.|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 445556677888999999999999999987755323 4457888899999999999999999999
Q ss_pred HHHhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 434 TEEYGIQA-----KTEHYIYMVKL--LGLAG--NLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 434 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
.+. .| +..+...++.+ ....| +..+|..+|+++.. .|+......++.++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 56 34555556555 33334 89999999999754 34433344455588899999999999998777
Q ss_pred c----------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 504 N----------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 504 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
. +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 5 48899999888777777887 89999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-10 Score=99.81 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC--CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPD-ESTFS 411 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 411 (554)
+...+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445556666677777777777777777653 33 34566666777777777777777777776321 112 23455
Q ss_pred HHHHHHhc--------CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHH
Q 045069 412 ALLCACCH--------GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483 (554)
Q Consensus 412 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 483 (554)
.+..++.. .|++++|...|+++.+. .+.+......+.......+.. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 66666666 77777777777777663 222222222221111110000 111355677
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHcc----------CChhHHHHHHHHHhhcCC
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSNTYAED----------GRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 540 (554)
.+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++++..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7888888888888888888888874 34777788888766 788888888888877654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5.9e-10 Score=88.31 Aligned_cols=128 Identities=18% Similarity=0.186 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (554)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.++++++. .+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555556666666666655542 22344555555666666666666666665542 23455566777777888
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.|++++|...++++.+..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888889999999999999998887754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.1e-11 Score=96.02 Aligned_cols=142 Identities=7% Similarity=-0.099 Sum_probs=105.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (554)
...+...|++++|+..+++... ..|+.. .+..+...|.+.|++++|++.|++..+. -+-+..+|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3445556777788777777654 334332 4566777788888888888888888773 3445777888888888888
Q ss_pred ChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHH-HHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 458 NLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEI-VAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 458 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
++++|+..|++.. .+.++..+..+...+.+.|++++|.+ +++++++.+|+++.++.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887754 35577788888888888888876555 4688999999999999988888888775
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=117.52 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=135.8
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALL 414 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 414 (554)
-+...++.|..+|.+.|++++|++.|++..+ | +..+|..+..+|.+.|++++|+..|++.++ +.|+ ..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3567788888888888999999988887663 3 456788888899999999999999999988 4565 55888899
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChH
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
.++...|++++|++.|++..+. -+-+...+..+..+|.+.|++++|++.+++.. .+.+...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998873 34457888999999999999999999998864 3667888899999999999999
Q ss_pred HHHHHHHHHHhcC
Q 045069 493 LAEIVAHQLFEND 505 (554)
Q Consensus 493 ~A~~~~~~~~~~~ 505 (554)
+|.+.++++++..
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-08 Score=96.72 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHH---hCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEE---YGIQAKT-EHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
+..+...+...|++++|...+++.... .+.+++. ..+..+..++...|+.++|...+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444555555555555555554331 1111121 24445555556666666666665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.2e-10 Score=102.06 Aligned_cols=191 Identities=15% Similarity=0.039 Sum_probs=124.7
Q ss_pred HHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN-PD----ESTFSAL 413 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 413 (554)
...|...|++++|...|++..+ .+ ..+|+.+..+|...|++++|+..+++..+.... .+ ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445666777777766665442 11 346677777777888888888877777652100 11 2367778
Q ss_pred HHHHhcC-CchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC---Ch-----hhHH
Q 045069 414 LCACCHG-GLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PV---DP-----AVSG 479 (554)
Q Consensus 414 l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~-----~~~~ 479 (554)
...|... |++++|+..|++..+-..-..+ ..++..+...+.+.|++++|+..+++... .| .. ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888885 9999999888887763111111 34677888888999999999998887531 11 11 1466
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--ccCChhHHHHHHHHHhhc
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY-----KVMLSNTYA--EDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 538 (554)
.++.++...|++++|+..++++++.+|..... +..++.++. ..+++++|++.++++...
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 77778888899999999999999988875542 344555554 467788888888776544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.7e-10 Score=98.86 Aligned_cols=205 Identities=10% Similarity=-0.027 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHccCChHHHHHHHhccCC--CC----cch
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL--SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RN----IIT 374 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 374 (554)
..+...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+...+ |+ ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456677788888999999999999999998875221 167788899999999999999999998873 42 235
Q ss_pred HHHHHHHHHc--------CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhH
Q 045069 375 YNSVILGLGL--------HGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEH 445 (554)
Q Consensus 375 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 445 (554)
+..+..++.. .|++++|+..|+++++. .|+.. ....+ ..+...... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 6677788888 99999999999999984 45432 22111 111111110 0122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCch
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-PV----DPAVSGALLSCCHIY----------GNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+..+...|.+.|++++|+..++++.. .| .+..+..+..++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45667777888888888888877531 12 345666777777655 8899999999999999999864
Q ss_pred ---hHHHHHHHHHccCChhHH
Q 045069 511 ---YKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 511 ---~~~~l~~~~~~~g~~~~A 528 (554)
....+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 444555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-09 Score=98.98 Aligned_cols=172 Identities=8% Similarity=-0.068 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCC---C--
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLH-GFTYQAFEFFRDIIEKGLNP---D-- 406 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p---~-- 406 (554)
.+|+.+..+|.+.|++++|+..|++..+ .+ ..+++.+...|... |++++|+..|++..+. .| +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 4455555555556666665555554432 11 23566677777775 8888888888887762 22 1
Q ss_pred --HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC-CCh-----hHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC---
Q 045069 407 --ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ-AKT-----EHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVD--- 474 (554)
Q Consensus 407 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--- 474 (554)
..++..+...+.+.|++++|...|++..+. ... +.. ..+..++.++...|++++|...+++... .|+
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 235777888888888999998888888773 211 111 1566777788888899999988888642 222
Q ss_pred ---hhhHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 475 ---PAVSGALLSCCH--IYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 475 ---~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
...+..++.++. ..+++++|+..|+++...+|........+-
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 112344455553 346788888888887777776555444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-09 Score=89.11 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=126.3
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----chHHHHHHHHHhHHHhCCCCChhH
Q 045069 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG----LVNDGREIFTRMTEEYGIQAKTEH 445 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 445 (554)
.+...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 344555666666666777888888888887754 55667777777777 6 888888888888663 35667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCCCCCC----hhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 446 YIYMVKLLGL----AGNLEEAYSFIWSLPKPVD----PAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 446 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
+..+...|.. .+++++|++++++.....+ +..+..|...|.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 7889999999988765433 7888888888888 78999999999999988 77778889
Q ss_pred HHHHHHHcc-C-----ChhHHHHHHHHHhhcCC
Q 045069 514 MLSNTYAED-G-----RWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 514 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 540 (554)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999888754 3 89999999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-09 Score=96.91 Aligned_cols=172 Identities=12% Similarity=0.016 Sum_probs=136.8
Q ss_pred HHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
.+.+......+...+..+...+...|++++|...|++..+ ..| +...+..+...+...|++++|...++++...
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--- 180 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--- 180 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---
Confidence 3333333333445566677788889999999999999988 445 4557888899999999999999999998663
Q ss_pred CCChhHHHH-HHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHHH
Q 045069 440 QAKTEHYIY-MVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK--GAYKVM 514 (554)
Q Consensus 440 ~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~ 514 (554)
.|+...... ....+...++.++|++.+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ...+..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 455443332 3334667788888888888764 46788899999999999999999999999999999988 889999
Q ss_pred HHHHHHccCChhHHHHHHHHHhh
Q 045069 515 LSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 515 l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++.++...|+.++|...+++.+.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=92.37 Aligned_cols=126 Identities=16% Similarity=0.037 Sum_probs=105.8
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 489 (554)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.+++.. .+.++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556677899999999988754 333 35556788999999999999999999974 4778999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH-HHHHhhcCCc
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL-RDDIVDNGLR 541 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~ 541 (554)
++++|+..|+++++.+|+++..+..++.+|.+.|++++|.+. ++++++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999887765 5888876543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=4.8e-09 Score=95.02 Aligned_cols=203 Identities=11% Similarity=0.067 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc-------
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQ------GKKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG------- 336 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------- 336 (554)
..++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|...+++..+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666677777777777777777766543 1111 22344444555555555555555555443320
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCCC-HHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK------GLNPD-EST 409 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 409 (554)
.+.... ++..+...+...|++++|...++++.+. +-.|+ ..+
T Consensus 123 ~~~~~~-------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 123 HPDVAK-------------------------------QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred ChHHHH-------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 011222 3444555555566666666666665542 11232 236
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHh------CCCC-ChhHHHHHHHHHHhc------CChHHHHHHHHhCCC--CCC
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEY------GIQA-KTEHYIYMVKLLGLA------GNLEEAYSFIWSLPK--PVD 474 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~--~~~ 474 (554)
+..+...+...|++++|...+++..+.. ...+ ....+..+...+... ..+.++...++.... +..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7777778888888888888888776520 1122 223333333333332 234444444544432 234
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
..++..+...+...|++++|...++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556788888999999999999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-10 Score=113.87 Aligned_cols=168 Identities=11% Similarity=-0.028 Sum_probs=120.8
Q ss_pred HccCChHHHHHHHhccC-----------CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 045069 352 SKCGYLGLGIQVFETMS-----------ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCH 419 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 419 (554)
...|++++|++.+++.. ..+...+..+...+...|++++|+..|+++.+. .| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56677777777777654 234456777777777888888888888887773 34 34567777777778
Q ss_pred CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 045069 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIV 497 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 497 (554)
.|++++|...|++..+. -+.+...+..+..+|.+.|++++ ++.++++. .+.+...+..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887763 33456777777888888888888 77777753 355667777788888888888888888
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 498 AHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 498 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
|+++++.+|++...+..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888777766554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-09 Score=107.28 Aligned_cols=159 Identities=11% Similarity=0.019 Sum_probs=118.8
Q ss_pred cCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHH
Q 045069 354 CGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+ ..|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4778889998888774 3456788888889999999999999999888 4454 56788888889999999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---GNSDLAEIVAHQLFEN 504 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 504 (554)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++.. .+.+...+..+..++... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998874 34457788889999999999999999998864 355677888888888888 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 045069 505 DPRKGAYKVMLS 516 (554)
Q Consensus 505 ~p~~~~~~~~l~ 516 (554)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998888887775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-09 Score=81.97 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=103.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777888888888888888887753 235567777888888888888888888888773 345567778888888
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
...|++++|.++++++. .+.+...+..++..+...|++++|...++++.+.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88899999988888764 2456777888888899999999999999999888775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-09 Score=89.50 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH-
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL- 452 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 452 (554)
+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...+++.... .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 44455566667777777777777665 233 3446667777777777777777777776553 2233333222212
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHccCChhHH
Q 045069 453 LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK--GAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A 528 (554)
+...+...+|++.+++.. .|.++..+..+..++...|++++|...++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 112223334566666643 35578888899999999999999999999999999875 56899999999999999999
Q ss_pred HHHHHHHhh
Q 045069 529 MKLRDDIVD 537 (554)
Q Consensus 529 ~~~~~~~~~ 537 (554)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=87.88 Aligned_cols=98 Identities=10% Similarity=-0.095 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+...+.+.|++++|++.|+++. .|.++..|..+..++...|++++|+..|+++++.+|+++..+..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5566777778888888888888888764 46678888889999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhcCC
Q 045069 521 EDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|++.|+++++...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999987654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=109.94 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=136.6
Q ss_pred HcCCChHHHHHHHHHHH--------HcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 383 GLHGFTYQAFEFFRDII--------EKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~--------~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
...|++++|++.+++.. + ..|+ ...+..+..++...|++++|...|++..+. -+.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 78899999999999998 4 3444 457888899999999999999999999884 455678899999999
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
...|++++|++.|+++. .+.+...+..+..++...|++++ ++.|+++++.+|+++..+..++.+|.+.|++++|++.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999964 36678889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 045069 532 RDDIVDNGL 540 (554)
Q Consensus 532 ~~~~~~~~~ 540 (554)
++++++.++
T Consensus 557 ~~~al~l~P 565 (681)
T 2pzi_A 557 LDEVPPTSR 565 (681)
T ss_dssp HHTSCTTST
T ss_pred HHhhcccCc
Confidence 999887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-09 Score=81.99 Aligned_cols=107 Identities=8% Similarity=-0.092 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++.. .+.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555555666666666666666665552 23345555555555555566666555555542 2444555555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
..|++++|++.|+++++.+|+++.++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 5555555555555555555555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.6e-09 Score=80.96 Aligned_cols=103 Identities=9% Similarity=-0.008 Sum_probs=92.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 439 IQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 439 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+.|+ ...+...+..|.+.|++++|++.|++.. .+.++..|..+..++...|++++|+..++++++.+|+++..+..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 4567788999999999999999999864 467889999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+.+|...|++++|++.++++++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999987643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=87.67 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=107.9
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHH----------------HHHHHHcCCChHHHHHHHHHHHHcCCC
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNS----------------VILGLGLHGFTYQAFEFFRDIIEKGLN 404 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~g~~ 404 (554)
+......+...|++++|...|++..+ | +...|.. +..+|.+.|++++|+..|++.++. .
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 34445566778888888888887763 3 2334555 777788888888888888888873 4
Q ss_pred C-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHhCCCC-CChhhHHH
Q 045069 405 P-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN--LEEAYSFIWSLPKP-VDPAVSGA 480 (554)
Q Consensus 405 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~-~~~~~~~~ 480 (554)
| +...+..+...+...|++++|...|++..+. -+.+..++..+..+|...|+ .+.+...++....+ |....+..
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5 4557777888888888888888888888773 34456777777777765543 34455566555432 22223444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
...++...|++++|+..|+++++.+|++
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5566667788888888888888888863
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-08 Score=85.66 Aligned_cols=129 Identities=10% Similarity=-0.079 Sum_probs=99.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...+++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3455666777888888888888776 4567778888888888888888888888888773 345567788888888
Q ss_pred HhcCChHHHHHHHHhCCC--CCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 454 GLAGNLEEAYSFIWSLPK--PVDP----------------AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~--~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
...|++++|++.+++... +.+. ..+..+..++...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888877531 2222 667777888888888888888888888888876
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.7e-08 Score=88.09 Aligned_cols=159 Identities=6% Similarity=-0.072 Sum_probs=119.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC-CC----hhHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGL-NPDES----TFSALLCACCHGGLVNDGREIFTRMTEEYGIQ-AK----TEHYI 447 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 447 (554)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...+++..+. ... ++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~-~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-QLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT-CCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-hcccccHHHHHHHHH
Confidence 46677888899999999988877321 22211 2334666677788999999999988773 222 22 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------C--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhH
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLP-------K--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGAYK 512 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~ 512 (554)
.++.+|...|++++|+.+++++. . +....++..++.+|...|++++|+..++++++..+. -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999998888754 1 112346788889999999999999999999987432 26788
Q ss_pred HHHHHHHHccCC-hhHHHHHHHHHhh
Q 045069 513 VMLSNTYAEDGR-WDDVMKLRDDIVD 537 (554)
Q Consensus 513 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 537 (554)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=86.35 Aligned_cols=96 Identities=15% Similarity=0.009 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3344445555555555555555555542 24455555555555666666666666666666666666666666666666
Q ss_pred ccCChhHHHHHHHHHhhc
Q 045069 521 EDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~ 538 (554)
..|++++|++.++++++.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-06 Score=85.58 Aligned_cols=367 Identities=11% Similarity=-0.033 Sum_probs=196.2
Q ss_pred cC-ChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC-HhHHH
Q 045069 82 AH-RFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL-IDEAI 159 (554)
Q Consensus 82 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 159 (554)
.| ++..|..+|+.+... -|. |+++.+..+|+..+.. .|+...|...+.-..+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377788888887764 333 7888888888888774 3677788777776655542 23344
Q ss_pred HhhcccCC------CCcchHHHHHHHHH----hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcc---cCCccchhhH
Q 045069 160 KVFDGVSD------PDLVLCNSMISGFA----HCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLW---EPSLLSVGQG 226 (554)
Q Consensus 160 ~~~~~~~~------~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~ 226 (554)
.+|+.... .+...|...+..+. ..++.+.+..+|++.... |.. .+..+-..|. ...+...+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHH
Confidence 44444321 34455666665433 235567777788877753 211 1111111111 0011111111
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc----CCCChhhHHHHHHHHHhcC--C-----HHHHHHHHH
Q 045069 227 IHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL----FHPDLVTWSALITGYSQQG--D-----YGKALYYFR 295 (554)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~ 295 (554)
+.... .+.+..|..+++.. ...+...|...+.--...+ - .+++..+|+
T Consensus 145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 11110 01112222222221 0112334444443322211 0 234556666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHH-HHHHhccC------
Q 045069 296 KLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG-IQVFETMS------ 368 (554)
Q Consensus 296 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------ 368 (554)
++.... +.+...+...+.-+...|+.+.|..+++..... +.+...+.. |....+.++. ..+.+...
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccch
Confidence 666542 334555655666666677777777777777766 333332222 1111111111 11111110
Q ss_pred ------CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCchHHHHHHHHHhHHHhCCCC
Q 045069 369 ------ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH-GGLVNDGREIFTRMTEEYGIQA 441 (554)
Q Consensus 369 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 441 (554)
......|...+....+.++.+.|..+|++. +. ..++...|......-.. .++.+.|..+|+...+. .+.
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~ 352 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPD 352 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTT
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCC
Confidence 001234566666666778899999999988 32 12344444322221112 33689999999999885 333
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+.
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45556667787788899999999999984 25677777777777889999998888888753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-08 Score=94.15 Aligned_cols=218 Identities=10% Similarity=-0.007 Sum_probs=152.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHH
Q 045069 284 QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK-SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (554)
.|++++|.+++++..+.... .+.. .++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 56778888888877643211 1222 45666666655543 456778899999998
Q ss_pred HHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhcCCchHHHHH
Q 045069 363 VFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPD--ESTFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 363 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~ 428 (554)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887652 11 3478888889999999999999999887631 1122 2467788888888 99999999
Q ss_pred HHHHhHHHhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCC----hhhHHHHHHHHHhcCChHHHHH
Q 045069 429 IFTRMTEEYGIQA----KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVD----PAVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 429 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~A~~ 496 (554)
.|++..+-..-.. ...++..+...|.+.|++++|++.+++... .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998876311111 145778889999999999999999988642 111 2255666677778899999999
Q ss_pred HHHHHHhcCCCCchhH-----HHHHHHHHccCChhHHHH
Q 045069 497 VAHQLFENDPRKGAYK-----VMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 497 ~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~ 530 (554)
.+++++ ..|...... ..++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 888766542 2344444 5677766666
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-08 Score=85.88 Aligned_cols=185 Identities=14% Similarity=-0.018 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcc----hHH
Q 045069 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL--SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNII----TYN 376 (554)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 376 (554)
+...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999999864321 246788889999999999999999998773 4432 344
Q ss_pred HHHHHHHc------------------CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 377 SVILGLGL------------------HGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 377 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
.+..++.. .|++++|+..|+++++ ..|+.. ++..... ...+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH--
Confidence 45555543 5789999999999998 456543 2221111 0111111111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVD---PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
....+...|.+.|++++|+..++++.. |.+ +..+..+..++.+.|+.++|...++++....|++..
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 224567788899999999999988642 223 256788899999999999999999999998887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=87.94 Aligned_cols=160 Identities=11% Similarity=0.021 Sum_probs=112.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHH----------------HHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSA----------------LLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
.....+...|++++|+..|++..+ ..|+.. .|.. +..++.+.|++++|...|++..+. -
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 344566778888888888888887 455533 5556 777888888888888888888773 3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 440 QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGN--SDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+.+...+..+..++...|++++|++.|++.. .|.++..+..+..++...|+ .+.+...++++....|. ...+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHH
Confidence 4467788888888888888888888888864 36677788888877765543 34455566555432222 2345556
Q ss_pred HHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+.++...|++++|+..++++++..+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 67777788888888888888876553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-08 Score=90.51 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHH-HHH
Q 045069 405 PDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSG-ALL 482 (554)
Q Consensus 405 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~l~ 482 (554)
.+...+..+...+...|++++|...|++..+. -+.+...+..+...+.+.|++++|...++++.. .|+..... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 33456778888899999999999999999884 455678899999999999999999999999864 44444333 233
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+...++.+.|...++++++.+|+++..+..++.+|...|++++|++.++++++..+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 346778889999999999999999999999999999999999999999999999876544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-07 Score=81.88 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=110.6
Q ss_pred HHHHHHHHHHccC--ChHHHHHHHhccCC--C-CcchHHHHHHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHH
Q 045069 343 VSSALVDMYSKCG--YLGLGIQVFETMSE--R-NIITYNSVILGL----GLH---GFTYQAFEFFRDIIEKGLNPDESTF 410 (554)
Q Consensus 343 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~-~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~ 410 (554)
+|+.--.++...| ++++++++++.+.. | +..+|+.-...+ ... +++++++.+++++.+.. +-+..+|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3343344444444 55555555555442 2 222333322222 223 56667777777776632 2244566
Q ss_pred HHHHHHHhcCCchH--HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhCC--CCCChhhHHH
Q 045069 411 SALLCACCHGGLVN--DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN------LEEAYSFIWSLP--KPVDPAVSGA 480 (554)
Q Consensus 411 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~~~~~~~~~ 480 (554)
..-...+.+.|.++ ++++.++++.+. -+-+...|+....++.+.|+ ++++++.++++. .+.+...|..
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 65555556666666 677777777663 34455566555555555555 666776666643 3556667766
Q ss_pred HHHHHHhcCChH-HHHHHHHHHHhcC---CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 481 LLSCCHIYGNSD-LAEIVAHQLFEND---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 481 l~~~~~~~~~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+...+.+.|+.. .+..+.+++.+.+ |.++..+..++.+|.+.|+.++|+++++++.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 666666666533 3455666665554 66667777777777777777777777777764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-08 Score=98.38 Aligned_cols=151 Identities=14% Similarity=0.022 Sum_probs=89.7
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 045069 386 GFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 386 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
|++++|+..+++..+ ..|+ ...+..+...+...|++++|.+.+++..+. .+.+...+..+...|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566677777776665 3343 446666666777777777777777776552 33345666667777777777777777
Q ss_pred HHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc---CChhHHHHHHHHHhhcC
Q 045069 465 FIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED---GRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 465 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 539 (554)
.+++.. .+.+...+..+..++...|++++|.+.++++.+.+|+++..+..++.++... |++++|.+.++++++.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 776643 2445666667777777777777777777777777777777777777777777 77777777777776654
Q ss_pred C
Q 045069 540 L 540 (554)
Q Consensus 540 ~ 540 (554)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=92.37 Aligned_cols=220 Identities=9% Similarity=-0.073 Sum_probs=151.3
Q ss_pred cCChhhHHHHHhhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHH
Q 045069 253 CNCMNSAYHVFNSLFHPDLVTWSALITGYSQ-QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGY 331 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 331 (554)
.|++++|.+++++..+... ..+.+ .++++.|...|.+. ...+...|+++.|...+.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-------~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-------TSFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CCSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-------ccccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 4567777777766522110 02233 57888888888765 3467788999999999888
Q ss_pred HHHhc----CC-chHHHHHHHHHHHHccCChHHHHHHHhccCC-------CC--cchHHHHHHHHHcCCChHHHHHHHHH
Q 045069 332 VIQHG----FE-LSVMVSSALVDMYSKCGYLGLGIQVFETMSE-------RN--IITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 332 ~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
..+.. -. ....+|+.+..+|...|++++|+..|++..+ +. ..++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 76432 11 1245788889999999999999998887542 11 2467788888888 999999999999
Q ss_pred HHHcCCCC-C----HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 398 IIEKGLNP-D----ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 398 m~~~g~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
..+..... + ..++..+...+...|++++|...|++..+...-.++ ...+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88731111 1 346888899999999999999999998763111111 23566677778888999999999988
Q ss_pred CCCCCCh------hhHHHHHHHHHhcCChHHHHH
Q 045069 469 LPKPVDP------AVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 469 ~~~~~~~------~~~~~l~~~~~~~~~~~~A~~ 496 (554)
....|+. .....++.++ ..|+.+.+..
T Consensus 221 al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 5432211 1233444444 5677666555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-09 Score=85.94 Aligned_cols=125 Identities=9% Similarity=-0.005 Sum_probs=63.8
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH-HHhcCCh--
Q 045069 383 GLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL-LGLAGNL-- 459 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 459 (554)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34455666666666655531 223445555666666666666666666665552 22334445555555 4455555
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
++|.+.++++. .+.+...+..+...+...|++++|...++++++..|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 55555555542 2334445555555555555555555555555555555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-08 Score=80.73 Aligned_cols=127 Identities=6% Similarity=-0.112 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+...|++++|...|++..+. .+.+..++..++..+...|++++|.+.+++.. .+.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4556666777788888888888887763 34456777778888888888888888887753 3556778888888999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHH--HHccCChhHHHHHHHHHhh
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT--YAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 537 (554)
..|++++|...++++.+..|.+...+..+..+ +...|++++|++.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998887555444 7888999999999988754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-08 Score=89.19 Aligned_cols=163 Identities=7% Similarity=-0.101 Sum_probs=109.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhC--CCCC--hhH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-----STFSALLCACCHGGLVNDGREIFTRMTEEYG--IQAK--TEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~ 445 (554)
+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334555667777777777777777664221111 1233455556677788888888877764211 1111 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------Cch
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP----KPVD-----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGA 510 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 510 (554)
++.++..|...|++++|+..++++. ..++ ..++..++.+|...|++++|+..++++++..+. ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7778888888888888888887653 1111 257778888888899999999999888876321 256
Q ss_pred hHHHHHHHHHccCChhHH-HHHHHHHhh
Q 045069 511 YKVMLSNTYAEDGRWDDV-MKLRDDIVD 537 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 537 (554)
++..++.+|.+.|++++| ..++++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788889999999999999 777887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=84.18 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=106.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHH-HHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSC-CHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~-~~~ 487 (554)
+......+...|++++|...|++..+. -+.+...+..+..++...|++++|+..++++.. .|++..+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 445667788999999999999998773 345678899999999999999999999999763 3344433332222 223
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
.++...|+..++++++.+|+++..+..++.++...|++++|.+.++++++..+...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 33445689999999999999999999999999999999999999999998876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=81.57 Aligned_cols=126 Identities=5% Similarity=-0.100 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG 421 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 421 (554)
..+..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+...+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3455677778888999999999998888888888889999999999999999999988853 334567888888899999
Q ss_pred chHHHHHHHHHhHHHhCCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 422 LVNDGREIFTRMTEEYGIQAKT----------------EHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
++++|...|++..+. .+.+. ..+..+..+|...|++++|.+.+++..
T Consensus 86 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999988873 23323 678888888999999999999988854
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.2e-08 Score=75.84 Aligned_cols=115 Identities=8% Similarity=-0.101 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|++.+++.. .+.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 35566666666666666666666666542 23345566666666666666666666666543 244566777777778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888777776653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-07 Score=77.95 Aligned_cols=173 Identities=8% Similarity=-0.109 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-CCcchHHHHHHHHHcCC----ChHHHHHHHHHH
Q 045069 324 PGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-RNIITYNSVILGLGLHG----FTYQAFEFFRDI 398 (554)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 398 (554)
+|...|+...+.| ++..+..+...|...+++++|...|++..+ .+...+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4555666666554 455566667777777788888877776653 455566667777766 5 788888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHH
Q 045069 399 IEKGLNPDESTFSALLCACCH----GGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGL----AGNLEEAYSFIW 467 (554)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 467 (554)
.+.| +..++..+...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|+++++
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7754 56677777777776 78899999999888663 332 6778888888887 778999999998
Q ss_pred hCCC-CCChhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcCC
Q 045069 468 SLPK-PVDPAVSGALLSCCHIY-G-----NSDLAEIVAHQLFENDP 506 (554)
Q Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 506 (554)
+... +.++..+..|...|... | +.++|...++++.+...
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8643 35666777777777653 3 88999999999888743
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=7.8e-08 Score=75.29 Aligned_cols=117 Identities=12% Similarity=-0.026 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|.+.+++.. .+.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35666667777778888888888877763 34456677777777888888888888777753 345677788888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
...|++++|...++++.+..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998888888753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=73.33 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|..+++++. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666666777777777777777777663 33456666777777777777777777776653 245666777788888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
...|++++|...++++.+..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888877776544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.6e-08 Score=77.62 Aligned_cols=93 Identities=13% Similarity=-0.070 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
+..+...+.+.|++++|++.|+++. .+.+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344444555555555555555432 23345555555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHhhc
Q 045069 524 RWDDVMKLRDDIVDN 538 (554)
Q Consensus 524 ~~~~A~~~~~~~~~~ 538 (554)
++++|.+.++++++.
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.76 E-value=6e-08 Score=73.57 Aligned_cols=102 Identities=10% Similarity=-0.102 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR--KGAYKVMLSN 517 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 517 (554)
+...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556667777778888888888887753 3556777888888999999999999999999999999 9999999999
Q ss_pred HHHcc-CChhHHHHHHHHHhhcCCccC
Q 045069 518 TYAED-GRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 518 ~~~~~-g~~~~A~~~~~~~~~~~~~~~ 543 (554)
++... |++++|.+.++++.+..+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999988766443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=92.27 Aligned_cols=188 Identities=10% Similarity=-0.058 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCA 416 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 416 (554)
...+..+...+.+.|++++|...|++..+ | +...|..+..+|.+.|++++|...+++..+ ..|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 44566667777777888888888776652 3 556777788888888888888888888877 4454 4577788888
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQA---KTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
+...|++++|...|++..+...-.+ ....+..+ ...+...+.. ......+.+......+.. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8888888888888888765310000 11111111 1122222222 222233444444444432 2 3689999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHcc-CChhHHHHHHHHHhhc
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAED-GRWDDVMKLRDDIVDN 538 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 538 (554)
|.+.++++.+.+|++......+...+.+. +.+++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999888888887777776 7899999999988764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=6e-08 Score=75.63 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+..+...+.+.|++++|++.+++.. .+.+...+..+..++...|++++|+..++++++.+|+++..+..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34445555556666666666665542 2445566666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHhhcC
Q 045069 523 GRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 523 g~~~~A~~~~~~~~~~~ 539 (554)
|++++|.+.++++++..
T Consensus 86 ~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 86 KEYASALETLDAARTKD 102 (126)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC
Confidence 77777776666666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.2e-06 Score=74.39 Aligned_cols=224 Identities=8% Similarity=-0.009 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC--CcchhHHHHHHHHHhcCCchHHHHHHHHHHH----Hcc---CCh
Q 045069 288 GKALYYFRKLNMQGKKADP-VLIASVLAAAAKSA--NVWPGAVIHGYVIQHGFELSVMVSSALVDMY----SKC---GYL 357 (554)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 357 (554)
++|+.++..+... .|+. ..++.--.++...| ++++++..++.+.... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4566666555543 2332 23344344444444 5666666666665544 22333333333333 333 677
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc------hHHH
Q 045069 358 GLGIQVFETMSE---RNIITYNSVILGLGLHGFTY--QAFEFFRDIIEKGLNPDESTFSALLCACCHGGL------VNDG 426 (554)
Q Consensus 358 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~a 426 (554)
++++.+++.+.+ .+..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.-...+...+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888887764 34556666666677777777 9999999999854 2356677777666777776 8899
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE-AYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (554)
++.++++... .+-|...|+.+...+.+.|+..+ +..+..+... +.++..+..++..+.+.|+.++|.++++.
T Consensus 206 l~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999998874 56678888888888888887554 5556666542 45778888999999999999999999999
Q ss_pred HHh-cCCCCchhHHHHHH
Q 045069 501 LFE-NDPRKGAYKVMLSN 517 (554)
Q Consensus 501 ~~~-~~p~~~~~~~~l~~ 517 (554)
+.+ .+|.+..++...+.
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 997 69998888876653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=76.17 Aligned_cols=105 Identities=7% Similarity=-0.028 Sum_probs=90.4
Q ss_pred CCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 045069 403 LNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSG 479 (554)
Q Consensus 403 ~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 479 (554)
+.|+.. .+..+...+.+.|++++|...|++..+. -|.+...|..+..+|...|++++|++.|++.. .|.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 445443 6778888899999999999999999883 45568888999999999999999999999874 467788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
.+..++...|++++|+..|+++++..|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-08 Score=80.09 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 045069 394 FFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 394 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 470 (554)
.++++.+ +.|+. ..+..+...+...|++++|...|++.... -+.+...+..+..+|...|++++|++.++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444444 44543 35677778888899999999999998773 45567788888899999999999999998864
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.+.++..+..+..++...|++++|+..|+++++..|+++......
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 366788888999999999999999999999999999887765443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=75.71 Aligned_cols=96 Identities=14% Similarity=-0.040 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+..+...+.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556777888999999999998864 3668888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCC
Q 045069 523 GRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 523 g~~~~A~~~~~~~~~~~~ 540 (554)
|++++|++.++++++..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999987654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.2e-08 Score=88.85 Aligned_cols=94 Identities=11% Similarity=-0.070 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+..+|.+.|++++|++.++++. .+.+...+..+..++...|++++|+..|+++++.+|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567777788888888888888887754 35677888889999999999999999999999999999999999999999
Q ss_pred ccCChhHH-HHHHHHHh
Q 045069 521 EDGRWDDV-MKLRDDIV 536 (554)
Q Consensus 521 ~~g~~~~A-~~~~~~~~ 536 (554)
+.|++++| .+.+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 45666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.1e-08 Score=78.61 Aligned_cols=108 Identities=10% Similarity=-0.054 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSC 484 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 484 (554)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++.. .+.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 446788888899999999999999999874 34567888899999999999999999998864 36678888899999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+...|++++|...++++++.+|++...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999888655543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=82.92 Aligned_cols=133 Identities=11% Similarity=-0.090 Sum_probs=61.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHHHh
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK--TEHYIYMVKLLGL 455 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 455 (554)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 334455555555555555555442 233333333333455555555555555533220 0 110 1234445555555
Q ss_pred cCChHHHHHHHHhCCCC---C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 456 AGNLEEAYSFIWSLPKP---V--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.|++++|++.|++.... | ..........++.+.|+.++|...|+++...+|+ +.+...|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 55555555555554211 1 1223444444555555555555555555555555 4433333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-05 Score=78.51 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=43.5
Q ss_pred CCchhHHHHhccCC--CCCcchHHHHHHHHHhcCC-hHHHHHHHHHhHHc-CCCC-CcccHHHHHHHhhc----CCChhh
Q 045069 52 NVLPSARILFDKTP--QRSVFLWNSIIRAYALAHR-FNDAKSLFKNLLRT-QLKP-DNFTYACITRACSE----NSDLPG 122 (554)
Q Consensus 52 ~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~ 122 (554)
|+++.+..+|++.. .|++..|...+....+.++ .+....+|+..... |..| +...|...+..+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 56677777776543 3566666666665555542 34455666665554 3222 33445555544332 345566
Q ss_pred HHHHHHHHHH
Q 045069 123 LRFVHGGAIV 132 (554)
Q Consensus 123 a~~~~~~~~~ 132 (554)
+..+|+..+.
T Consensus 108 vR~iy~rAL~ 117 (493)
T 2uy1_A 108 IRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6667666665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=73.57 Aligned_cols=98 Identities=11% Similarity=0.007 Sum_probs=59.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+...+..+...+...|++++|+..+++.. .+.+...+..+..++...|++++|...++++++.+|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34455555555555555555555555532 2344555666666666666666666666666666666666666666666
Q ss_pred HccCChhHHHHHHHHHhhcC
Q 045069 520 AEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~ 539 (554)
...|++++|++.++++++..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-06 Score=78.17 Aligned_cols=159 Identities=11% Similarity=-0.060 Sum_probs=119.0
Q ss_pred HHHHHHHccCChHHHHHHHhccCCC-----Cc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSER-----NI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN-PD----ESTFS 411 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~ 411 (554)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788889999999999876531 11 12334666677788999999999999884222 22 23688
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHh----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCC--------CCChhhH
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEY----GIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--------PVDPAVS 478 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 478 (554)
.+...|...|++++|...|+++.+.. +..+. ..++..++..|.+.|++++|++++++... ..-..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987521 11111 34778899999999999999999887531 1226678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 045069 479 GALLSCCHIYGN-SDLAEIVAHQLFEN 504 (554)
Q Consensus 479 ~~l~~~~~~~~~-~~~A~~~~~~~~~~ 504 (554)
..++.++...|+ +++|...+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999995 69999999998865
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.2e-08 Score=74.84 Aligned_cols=94 Identities=5% Similarity=-0.101 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-------hhHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG-------AYKVML 515 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l 515 (554)
.+..++..+.+.|++++|++.|++.. .|.+...|..+..+|...|++++|+..++++++.+|++. .++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34455555666666666666665542 244556666666666666777777777777666655443 245556
Q ss_pred HHHHHccCChhHHHHHHHHHhhc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+.++...|++++|++.+++.++.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666777777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-07 Score=73.44 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=91.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 440 QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
+.+...+..++..+.+.|++++|.+.+++.. .+.+...+..+..++...|++++|...++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3346778889999999999999999999864 35578889999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHhhcCCc
Q 045069 518 TYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 518 ~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++.+.|++++|.+.++++.+....
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999886543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-07 Score=80.80 Aligned_cols=127 Identities=13% Similarity=-0.037 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----hhHHHHHHHHH
Q 045069 411 SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDP----AVSGALLSCCH 486 (554)
Q Consensus 411 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~ 486 (554)
..+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....+++ ..+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 33444556666777777777666441 233224445555666667777777777654433222 24556666666
Q ss_pred hcCChHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 487 IYGNSDLAEIVAHQLFEND--PR-KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7777777777777666432 33 334556666667777777777777776666544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-07 Score=70.27 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...+++.. .+.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4445555555566666666666655542 22344445555555555555555555554432 1333444455555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
..|++++|...++++.+..|+++..+..++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555555555555555555555554444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-07 Score=78.32 Aligned_cols=95 Identities=6% Similarity=-0.098 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
..+..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|...++++++..|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566777778888888888888887754 356777888899999999999999999999999999999999999999999
Q ss_pred cCChhHHH-HHHHHHhhc
Q 045069 522 DGRWDDVM-KLRDDIVDN 538 (554)
Q Consensus 522 ~g~~~~A~-~~~~~~~~~ 538 (554)
.|+.+++. ..+..+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888887 556655543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.2e-07 Score=68.52 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..++..+...|++++|.+.+++.. .+.+...+..+..++...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566778888888999999999988864 35577888888888889999999999999999999998889999999999
Q ss_pred ccCChhHHHHHHHHHhhcCC
Q 045069 521 EDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|.+.+++..+.++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999998887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=77.29 Aligned_cols=124 Identities=6% Similarity=0.037 Sum_probs=101.7
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH-HHhcCCh--
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSC-CHIYGNS-- 491 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~-- 491 (554)
+...|++++|...+++..+. .+.+...+..+...|...|++++|...++++. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999999988774 45567888999999999999999999998864 25577788888888 7788998
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
++|...++++++.+|+++..+..++.+|...|++++|.+.++++++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999998876544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=76.84 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=78.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh---CCCC-ChhHHHHHHHHHHhcCCh
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY---GIQA-KTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 459 (554)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+.. +.+| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 11122345555555555555555555555544411 1111 133445555555666666
Q ss_pred HHHHHHHHhCCC----CC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC----chhHHHHHHHHHccCC
Q 045069 460 EEAYSFIWSLPK----PV-D----PAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRK----GAYKVMLSNTYAEDGR 524 (554)
Q Consensus 460 ~~A~~~~~~~~~----~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~ 524 (554)
++|.+.+++... .+ + ...+..+...+...|++++|...++++.+.. ..+ ...+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 666655554320 11 1 2335556666666777777777777766542 111 1234667777777777
Q ss_pred hhHHHHHHHHHhh
Q 045069 525 WDDVMKLRDDIVD 537 (554)
Q Consensus 525 ~~~A~~~~~~~~~ 537 (554)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=73.41 Aligned_cols=106 Identities=15% Similarity=0.039 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+.+.|++++|...|++.... -+.+...+..+..+|.+.|++++|+..+++.. .+.++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556666777888888888888888773 34467777888888888888888888888764 3667778888888999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
..|++++|...++++++..|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999888877665544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.3e-07 Score=69.71 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..++..+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888999999999999999999864 35677888999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhcCC
Q 045069 521 EDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|.++++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.3e-07 Score=70.14 Aligned_cols=110 Identities=8% Similarity=-0.122 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+.+.|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++.. .+.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4556666777778888888888777763 34456777777778888888888888777753 3556778888888889
Q ss_pred hcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFEND------PRKGAYKVMLSNTYA 520 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 520 (554)
..|++++|...++++++.+ |.+..+...+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999988 888777777765543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-06 Score=77.47 Aligned_cols=164 Identities=9% Similarity=-0.088 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC--CCc-------chHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI-------ITYNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPD-- 406 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~-- 406 (554)
...+...+..+...|++++|.+.++...+ +.. ..+..+...+...|++++|+..+++..+.. ..+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455667778889999999888875442 111 123445566778899999999999988632 1122
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCC--------CC
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--------PV 473 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~ 473 (554)
..+++.+...|...|++++|...+++..+.....|+ ..++..++..|.+.|++++|++++++... ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888899999999999999999998732111222 25788899999999999999999987531 11
Q ss_pred ChhhHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 045069 474 DPAVSGALLSCCHIYGNSDLA-EIVAHQLFEN 504 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 504 (554)
-..++..+..++...|++++| ...++++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 256778888999999999999 8888888754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-07 Score=70.90 Aligned_cols=99 Identities=11% Similarity=-0.026 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+...+..++..+...|++++|.+.+++.. .+.+...+..+..++...|++++|...++++.+..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999864 3567888999999999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHhhcCC
Q 045069 520 AEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...|++++|.+.++++.+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=9e-07 Score=70.94 Aligned_cols=111 Identities=10% Similarity=-0.045 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSG 479 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 479 (554)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|++.+++.. .+.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344566666666677777777777776654 3344 4555666666666666666666665542 233455566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
.+..++...|++++|...++++++.+|++......+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666666555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-06 Score=68.51 Aligned_cols=99 Identities=16% Similarity=0.015 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+...+..+...+...|++++|.+.+++.. ..|+ ...+..+..++...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 45566666667777777777777776643 2333 456666666677777777777777777777777777777777
Q ss_pred HHHHccCChhHHHHHHHHHhhcCC
Q 045069 517 NTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.++...|++++|.+.++++++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777777777777777766543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=72.09 Aligned_cols=92 Identities=10% Similarity=-0.095 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
.+..+...+...|++++|+..|++.++. .| +...|..+..++...|++++|+..|++..+. .+.+...+..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444444455555555555555555542 22 3334444445555555555555555555442 22234444455555
Q ss_pred HHhcCChHHHHHHHHhC
Q 045069 453 LGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~ 469 (554)
|...|++++|.+.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=68.47 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCCC--CCC---hhhHHHHHHH
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKT---EHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVD---PAVSGALLSC 484 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~ 484 (554)
+...+...|++++|...|+++.+. .+.+. ..+..+..++.+.|++++|...+++... +.+ +..+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444555666666666666666553 12222 3555555566666666666666655421 222 3445555555
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+...|++++|...++++++..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 5666666666666666666666555444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=69.63 Aligned_cols=112 Identities=9% Similarity=-0.097 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556777777777778888888888777663 34456677777777888888888887777753 3556777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPR-----KGAYKVMLSNTY 519 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 519 (554)
++...|++++|+..++++++..|+ +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888888899999999888888776 555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-06 Score=69.02 Aligned_cols=128 Identities=12% Similarity=-0.084 Sum_probs=83.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34555666667777777777777777632 224556777777777777777777777777663 344566777777777
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHH--HHHHHhcCChHHHHHHHHHHHhc
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGAL--LSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...|++++|.+.+++.. .+.+...+..+ +..+...|++++|...+++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 77778887777777653 23344444333 33366677888888877766543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=69.32 Aligned_cols=64 Identities=14% Similarity=0.004 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFEN-------DPRKGAYK----VMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
..|..+..++.+.|++++|+..++++++. +|++...| +..+.++...|++++|++.|++.++..
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 37778888888888888888888888888 99999999 999999999999999999999988643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=83.17 Aligned_cols=94 Identities=6% Similarity=-0.012 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...|..+..+|.+.|++++|+..++++. .+.+...+..+..++...|++++|+..|+++++.+|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567778888888888888888888764 35677888889999999999999999999999999999999999999999
Q ss_pred ccCChhHHHH-HHHHHh
Q 045069 521 EDGRWDDVMK-LRDDIV 536 (554)
Q Consensus 521 ~~g~~~~A~~-~~~~~~ 536 (554)
+.|++++|.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988874 445443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-05 Score=71.99 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+.++.....|+++|...|+.++|.++++.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4666777888888888888888888888875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.4e-07 Score=72.26 Aligned_cols=102 Identities=12% Similarity=-0.028 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhC----------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYG----------------IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP- 470 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 470 (554)
..+......+.+.|++++|...|++...... .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3566777778888888888888888766200 01112345555555555555555555555542
Q ss_pred -CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 471 -KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 471 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
.+.+...+..++.++...|++++|...++++++.+|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 244455555555555555555555555555555555555
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=68.76 Aligned_cols=110 Identities=5% Similarity=-0.127 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--C---CC----hhhH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--P---VD----PAVS 478 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~ 478 (554)
..+..+...+...|++++|...+++..+. .+.+...+..++..+...|++++|...+++... + ++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45667777777888888888888887773 344566777777777788888888877776531 1 11 5566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
..+..++...|++++|...++++.+..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6777777777888888888887777776 4555555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00016 Score=66.00 Aligned_cols=232 Identities=10% Similarity=-0.007 Sum_probs=151.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc-C-ChH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA-NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC-G-YLG 358 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 358 (554)
.+.+..++|+++++++.... +-+...++.--..+...| .+++++.+++.+.... +-+..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34444566777777776553 122333444444444555 4677777777777655 44555666655555555 5 778
Q ss_pred HHHHHHhccCCCCc---chHHHHHHHHHcCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-----
Q 045069 359 LGIQVFETMSERNI---ITYNSVILGLGLHGFTY--------QAFEFFRDIIEKGLNPDESTFSALLCACCHGGL----- 422 (554)
Q Consensus 359 ~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----- 422 (554)
+++++++.+.+.+. .+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 88888888876443 44544444444444444 8999999999853 3366678887777777775
Q ss_pred --hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhCCC--------C
Q 045069 423 --VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL--------------------EEAYSFIWSLPK--------P 472 (554)
Q Consensus 423 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~--------~ 472 (554)
++++++.+++.... .+-|...|+.+-..+.+.|+. .+..+...++.. .
T Consensus 222 ~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 68888999888873 555677787777777776654 344455555432 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH-hcCCCCchhHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLF-ENDPRKGAYKVMLSNT 518 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 518 (554)
+++..+..++..|...|+.++|.++++.+. +.+|....++.-.+..
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 567788889999999999999999999997 4589887777665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-05 Score=69.72 Aligned_cols=180 Identities=8% Similarity=-0.047 Sum_probs=105.7
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-hHHHHHHH
Q 045069 357 LGLGIQVFETMSE---RNIITYNSVILGLGLHG--FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL-VNDGREIF 430 (554)
Q Consensus 357 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 430 (554)
+++++.+++.+.. .+..+|+.-...+...+ .+++++.+++++.+.. +-|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555554442 23344444444444555 3667777777777642 2244566555555556666 46777777
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc------
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLA--------------GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY------ 488 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------ 488 (554)
+++.+. .+-|...|+.....+.+. +.++++++.+.+.. .|.|...|.-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 777663 344555565555554443 34666777766653 355666665544444433
Q ss_pred -----CChHHHHHHHHHHHhcCCCCchhHHHHHHHH---HccCChhHHHHHHHHHhhcC
Q 045069 489 -----GNSDLAEIVAHQLFENDPRKGAYKVMLSNTY---AEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 489 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 539 (554)
+.++++++.++++++..|++...+..++... ...|..+++...+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3467888888888888888866655554322 24577778888888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=6.5e-07 Score=87.34 Aligned_cols=118 Identities=6% Similarity=-0.110 Sum_probs=92.1
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChH
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
..+.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|++.+++.. .+.+...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456677888888888887763 34457777888888888888888888887753 3556788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HHccCChhHHHHHHHH
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNT--YAEDGRWDDVMKLRDD 534 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 534 (554)
+|++.++++++..|++...+..++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999999983
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-07 Score=71.18 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHhHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHH
Q 045069 420 GGLVNDGREIFTRMTEEYG--IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
.|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.+++.. .+.++..+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45556666666665441 1 12223445555555555555555555555542 2334445555555555555555555
Q ss_pred HHHHHHHhcCCCCchh
Q 045069 496 IVAHQLFENDPRKGAY 511 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~ 511 (554)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 5555555555554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.8e-07 Score=82.60 Aligned_cols=151 Identities=12% Similarity=-0.058 Sum_probs=80.9
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
..+..+...+.+.|++++|+..|++.++ ..|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3455666677778888888888888776 3454432 223344444332221 1367888889
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HccCChhHHH
Q 045069 453 LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY-AEDGRWDDVM 529 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 529 (554)
|.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..|+++++.+|+++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 3567888999999999999999999999999999999999999888774 4567888899
Q ss_pred HHHHHHhhcCCccC
Q 045069 530 KLRDDIVDNGLRKE 543 (554)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (554)
+.++++....+...
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999887655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.8e-06 Score=79.47 Aligned_cols=163 Identities=11% Similarity=-0.083 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhcCCchHHHHHHHHHhHHHh---CCCCC-hhH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDES----TFSALLCACCHGGLVNDGREIFTRMTEEY---GIQAK-TEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~ 445 (554)
+..+...|...|++++|.+++.++.+.- -.++.. ..+.+...+...|+++.|..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777777665421 111211 22333334455678888888777765421 22222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC----ch
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP--------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND---PRK----GA 510 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~----~~ 510 (554)
+..++..|...|++++|..+++++. .+....++..++..|...|++++|..+++++.... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6778888888888888888877642 12234466777888888899999998888887762 222 24
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++..++..+...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566677778888999999888887764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-07 Score=78.84 Aligned_cols=98 Identities=9% Similarity=-0.144 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVD----------------PAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...+..+...+.+.|++++|++.+++.. .+.+ ...+..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445556666666777777777666642 1122 267888899999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 505 DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 505 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+|+++..+..++.+|...|++++|++.++++++..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999987654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-06 Score=72.86 Aligned_cols=61 Identities=10% Similarity=-0.054 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPD--ESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
+..+...+...|++++|...+++..+.. -.|. ..++..+...+...|++++|.+.+++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444445555555555555555544310 0111 12345666666677777777777766655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-06 Score=76.99 Aligned_cols=104 Identities=9% Similarity=-0.094 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLS 483 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 483 (554)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++... +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777777888888888888887763 334567777777778888888888887777542 456667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
++...|++++|+..++++++.+|+++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 7778888888888888877777665433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.1e-06 Score=63.82 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--CCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLPK--PVDP---AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSNT 518 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 518 (554)
..+...+...|++++|.+.++++.. +.++ ..+..+..++...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455667777888888888777532 2233 466677777788888888888888888887777 6667778888
Q ss_pred HHccCChhHHHHHHHHHhhcC
Q 045069 519 YAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 519 ~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+...|++++|.+.++++++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-06 Score=67.15 Aligned_cols=94 Identities=7% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------chhHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK-------GAYKVML 515 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l 515 (554)
.+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.+ +..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34445555555555555555555432 23344455555555555555555555555555554433 4455555
Q ss_pred HHHHHccCChhHHHHHHHHHhhc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+.++...|++++|.+.++++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555555555555555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-06 Score=66.23 Aligned_cols=96 Identities=13% Similarity=-0.013 Sum_probs=59.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 489 (554)
.+...+.+.|++++|...|++..+. -+.+...+..+..++...|++++|+..+++.. .+.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444556666666666666666652 33355666666666666677777776666643 2445666777777777778
Q ss_pred ChHHHHHHHHHHHhcCCCCc
Q 045069 490 NSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~ 509 (554)
++++|+..++++++.+|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888877777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-06 Score=77.62 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..|..+..++.+.|++++|+..+++..+. .+.+...+..+..+|...|++++|+..|+++. .+.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45555666666666666666666666552 23345556666666666666666666665543 244555566666666
Q ss_pred HhcCChHHH-HHHHHHHHh
Q 045069 486 HIYGNSDLA-EIVAHQLFE 503 (554)
Q Consensus 486 ~~~~~~~~A-~~~~~~~~~ 503 (554)
...|+.++| ...++++..
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 666666665 334454443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=64.02 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPV--DPAVSGALLSCC 485 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~ 485 (554)
+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++.. .+. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344444555555555555555555542 23334455555555555566666665555532 133 455666666667
Q ss_pred Hhc-CChHHHHHHHHHHHhcCCCCc
Q 045069 486 HIY-GNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 486 ~~~-~~~~~A~~~~~~~~~~~p~~~ 509 (554)
... |++++|.+.++++.+..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 777777777777777766553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=79.89 Aligned_cols=90 Identities=11% Similarity=-0.089 Sum_probs=78.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+..+|..+..+|.+.|++++|++.++++. .+.+...+..+..++...|++++|+..++++++.+|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35678888899999999999999998864 3567888899999999999999999999999999999999999999999
Q ss_pred HccCChhHHHHH
Q 045069 520 AEDGRWDDVMKL 531 (554)
Q Consensus 520 ~~~g~~~~A~~~ 531 (554)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888887653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=70.21 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--------------------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLPK--------------------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
......+.+.|++++|++.|.+... +.....+..+..++.+.|++++|+..++++++.+|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 4445556666666666666655321 11224555566666666666666666666666666
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 507 RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 507 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.++..+..++.+|...|++++|.+.++++++..+
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 6666666666666666666666666666665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=69.40 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCch
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK----PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFEND------PRKGA 510 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~ 510 (554)
++..+...+...|++++|.+.+++... .+ ....+..+...+...|++++|...++++++.. +....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344455555555555555555544320 11 13345566677777888888888888777662 12245
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.+..++.++...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778889999999999999999988753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.9e-06 Score=61.94 Aligned_cols=67 Identities=24% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+.++..+..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|++.+++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567788888888899999999999999999999999999999999999999999999999888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.7e-06 Score=63.82 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCC----hhhHHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVD----PAVSGA 480 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~ 480 (554)
+..+...+.+.|++++|+..|++..+. .|.+...|..+..+|.+.|++++|++.+++... .++ ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 334444444445555555555444441 222344444444455555555555544444321 000 124555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+..++...|++++|++.|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 667777788888888888888877664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-06 Score=67.38 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=59.9
Q ss_pred cCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHH
Q 045069 456 AGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 530 (554)
.|++++|+..+++... +.+...+..+..++...|++++|+..++++++.+|+++.++..++.++...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 5677777777776532 23455667777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcC
Q 045069 531 LRDDIVDNG 539 (554)
Q Consensus 531 ~~~~~~~~~ 539 (554)
.+++.++..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.1e-07 Score=67.85 Aligned_cols=94 Identities=15% Similarity=-0.001 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK------GAYKV 513 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 513 (554)
+...+..+...+.+.|++++|++.+++.. .+.++..+..+..++...|++++|+..++++++.+|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34566677777778888888888887753 35577788888889999999999999999999999998 77888
Q ss_pred HHHHHHHccCChhHHHHHHHHH
Q 045069 514 MLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 514 ~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
.++.++...|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8888888888888887766544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-06 Score=76.92 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
...+..+...+.+.|++++|...|++... |+.. .+...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888999999999999999998653 3221 1223344444433221 136777888899
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHH-HHhcCChHHHH
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSC-CHIYGNSDLAE 495 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~A~ 495 (554)
+.|++++|+..+++..+. .+.+...+..+..+|...|++++|.+.|++... +.+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998873 345678889999999999999999999998753 4455555555555 34456778888
Q ss_pred HHHHHHHhcCCCCc
Q 045069 496 IVAHQLFENDPRKG 509 (554)
Q Consensus 496 ~~~~~~~~~~p~~~ 509 (554)
..|++++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.6e-05 Score=75.04 Aligned_cols=169 Identities=11% Similarity=-0.045 Sum_probs=133.5
Q ss_pred CChHHHHHHHhccCC--CC-cchHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcC
Q 045069 355 GYLGLGIQVFETMSE--RN-IITYNSVILGLGLHGF----------TYQAFEFFRDIIEKGLNP-DESTFSALLCACCHG 420 (554)
Q Consensus 355 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 420 (554)
...++|++.++.+.. |+ ...|+.--..+...|+ ++++++.++++.+. .| +..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344567777777663 33 3455555555555555 89999999999984 45 455888888888888
Q ss_pred C--chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCCC--CCChhhHHHHHHHHHhc-------
Q 045069 421 G--LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG-NLEEAYSFIWSLPK--PVDPAVSGALLSCCHIY------- 488 (554)
Q Consensus 421 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~------- 488 (554)
+ +++++++.++++.+. -+-+..+|+.-..++.+.| .++++++.++++.. +.+...|......+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 679999999999984 4557888888888888888 89999999998753 66788888877776653
Q ss_pred -------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 045069 489 -------GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 489 -------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 527 (554)
+.++++++.+++++..+|++...|..+..++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988666
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-05 Score=75.49 Aligned_cols=158 Identities=13% Similarity=0.016 Sum_probs=117.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPD----------------ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888877421111 1246778899999999999999999987643332322
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHhCC-------C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 045069 444 ----EHYIYMVKLLGLAGNLEEAYSFIWSLP-------K-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN------D 505 (554)
Q Consensus 444 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 505 (554)
.+.+.+...+...|++++|.++++... . .....++..++..+...|++++|..+++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 233445555667899999999887652 1 223567788999999999999999999998776 2
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456888899999999999999999999875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=82.67 Aligned_cols=128 Identities=10% Similarity=0.029 Sum_probs=84.9
Q ss_pred HhcCCchHHHHHHHHHhHHHh--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC---------C-CCChhhHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEY--GIQA----KTEHYIYMVKLLGLAGNLEEAYSFIWSLP---------K-PVDPAVSGA 480 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~-~~~~~~~~~ 480 (554)
+...|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|..++++.. . +.-..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445667777766666654421 1112 14456667777777777777777666542 1 122445677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----CCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFEN-----DPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
|...|...|++++|+.+++++++. .|+++ .....+..++...|.+++|+.+++++.+...+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 778888888888888888888776 45555 45567888888999999999999999875544444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=65.51 Aligned_cols=130 Identities=15% Similarity=0.017 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPDE----STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 445 (554)
+..+...+...|++++|...+++..+... .++. .++..+...+...|++++|...+++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555555443110 0111 24555566666666666666666665442111111 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC----C----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK----P----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..+...+...|++++|.+.+++... . .....+..+...+...|++++|...++++.+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55666666777777777776665421 1 12345666777788888888888888887765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-05 Score=56.69 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCC
Q 045069 472 PVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAG 545 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 545 (554)
+.++..+..+..++...++ .++|...++++++.+|+++.....++..+.+.|++++|+.+|+++++..+. .+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 5677788888888765554 799999999999999999999999999999999999999999999998776 544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=76.95 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=48.1
Q ss_pred HHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHH
Q 045069 351 YSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a 426 (554)
+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+. .|+ ..++..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4444555555555554331 22334444455555555555555555555542 222 23444444455555555555
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKL--LGLAGNLEEAYSFIW 467 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 467 (554)
.+.|++..+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554442 11122233333333 444445555554444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.9e-06 Score=62.45 Aligned_cols=64 Identities=13% Similarity=-0.022 Sum_probs=31.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...++++++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555555555555555555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.7e-06 Score=67.28 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=58.5
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC-
Q 045069 457 GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGN----------SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG- 523 (554)
Q Consensus 457 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 523 (554)
+.+++|++.+++.. .+.+...|..+..++...++ +++|+..|+++++.+|++..++..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 34444444444432 23344444444444444433 568999999999999999999999999998774
Q ss_pred ----------ChhHHHHHHHHHhhcCCc
Q 045069 524 ----------RWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 524 ----------~~~~A~~~~~~~~~~~~~ 541 (554)
++++|++.|+++++.++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 899999999998887653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00026 Score=64.22 Aligned_cols=184 Identities=11% Similarity=-0.027 Sum_probs=137.4
Q ss_pred ccCCh-HHHHHHHhccCCCCcc---hHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 045069 353 KCGYL-GLGIQVFETMSERNII---TYNSVILGLGLHGF----------TYQAFEFFRDIIEKGLNP-DESTFSALLCAC 417 (554)
Q Consensus 353 ~~g~~-~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 417 (554)
+.|.+ ++|+.+++.+...++. .|+.--..+...+. +++++.+++.+... .| +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34444 4678888877653332 34332222222222 67899999999884 44 556787777777
Q ss_pred hcCC--chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhCC--CCCChhhHHHHHHHHHhc----
Q 045069 418 CHGG--LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN-LEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---- 488 (554)
Q Consensus 418 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---- 488 (554)
...+ .+++++.+++++.+. -+-+..+|+.-..++...|. ++++++.++++. .+.+...|......+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 7777 489999999999984 56678888888888888888 589999998874 467888888777766655
Q ss_pred ----------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc-----------CChhHHHHHHHHHhhcCC
Q 045069 489 ----------GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED-----------GRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 489 ----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 540 (554)
+.++++++.+.+++..+|++.+.+..+..++.+. +.++++++.++++.+..+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 4588999999999999999999998887777766 468899999999988764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=56.86 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+...+...|++++|++.+++.. .+.+...+..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455556666666666666666666643 24456667777777777888888888888888888888887777777766
Q ss_pred ccC
Q 045069 521 EDG 523 (554)
Q Consensus 521 ~~g 523 (554)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=9.6e-06 Score=64.25 Aligned_cols=72 Identities=8% Similarity=-0.151 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP---------KPVDPAVS----GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
.|..+..++.+.|++++|+..+++.. .+.+...| .....++...|++++|+..|+++++..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 55666666666666666666655532 34456677 888999999999999999999999999988776
Q ss_pred HHHHH
Q 045069 512 KVMLS 516 (554)
Q Consensus 512 ~~~l~ 516 (554)
...+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=76.16 Aligned_cols=115 Identities=7% Similarity=-0.057 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
.+..+...+.+.|++++|...|++..+.....++.. .++..+.- +.....|..+..++.+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~~~-----~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKASE-----SFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHHHH-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 455666666666667666666666655211111100 00000000 11246788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
|++++|+..++++++.+|+++..+..++.+|...|++++|+..|+++++..+..
T Consensus 331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999876543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=74.96 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 486 (554)
...+..+...+.+.|++++|...|++..+.. +.. ......+++.+ ..+.+...+..+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~-----~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK-----LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG-----GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3457777778888888888888888876620 000 00011111111 11335677888999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.|++++|+..++++++.+|+++..+..++.+|...|++++|++.++++++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=8.1e-05 Score=58.55 Aligned_cols=90 Identities=7% Similarity=-0.115 Sum_probs=53.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc---
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE--- 521 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 521 (554)
+...|...+..++|.++|++.....++.....|...|.. .++.++|...++++.+. .++.....|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555554334455555555555555 56666666666666654 455666667767766
Q ss_pred -cCChhHHHHHHHHHhhcCC
Q 045069 522 -DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 522 -~g~~~~A~~~~~~~~~~~~ 540 (554)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6677777777777766553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.7e-05 Score=75.61 Aligned_cols=158 Identities=8% Similarity=-0.075 Sum_probs=130.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCc----------hHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGL----------VNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
....++|++.++++.+ ..|+.. .|+.--..+...|+ ++++++.++++.+. .+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3345788999999999 567655 56665555655566 89999999999884 566788898888888
Q ss_pred HhcC--ChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc------
Q 045069 454 GLAG--NLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG-NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED------ 522 (554)
Q Consensus 454 ~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 522 (554)
.+.| +++++++.++++. .+.+..+|..-..++...| .++++++.++++++.+|.+..++...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 7799999999975 4778889988888888888 899999999999999999999999998888763
Q ss_pred --------CChhHHHHHHHHHhhcCCccCCCe
Q 045069 523 --------GRWDDVMKLRDDIVDNGLRKEAGV 546 (554)
Q Consensus 523 --------g~~~~A~~~~~~~~~~~~~~~~~~ 546 (554)
+.+++|++++++++...+.....+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 567999999999998776554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.5e-05 Score=57.87 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|++.++++++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45677888899999999999999999999999999999999999999999999999999999987654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.4e-05 Score=71.49 Aligned_cols=240 Identities=10% Similarity=0.070 Sum_probs=175.2
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhh
Q 045069 36 RDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS 115 (554)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 115 (554)
-.+..|+.|.++..+.+.+.+|++.|-+.. |+..|..++.+..+.|.+++-+..+...++.. -++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 356778999999999999999988765544 55678899999999999999999888776652 24455568899999
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC------------------------CCcc
Q 045069 116 ENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD------------------------PDLV 171 (554)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 171 (554)
+.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9999887766652 36666666777888888888888888776542 5677
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045069 172 LCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA 251 (554)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (554)
+|-.+-.+|...+.+.-|.-.--.+.- .| .....++..|-..|.+++-..+++.... --.....+++.|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglg-lErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTT-STTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhC-CCchhHHHHHHHHHHHH
Confidence 899999999999998877655444431 22 2334566778889999998888877652 12346778888988888
Q ss_pred hcCChhhHHHHHhhcC----C-------CChhhHHHHHHHHHhcCCHHHHHHH
Q 045069 252 RCNCMNSAYHVFNSLF----H-------PDLVTWSALITGYSQQGDYGKALYY 293 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~~----~-------~~~~~~~~l~~~~~~~g~~~~a~~~ 293 (554)
+- +.++..+.++... - .....|.-++-.|..-.++|.|...
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 85 4555555544431 1 2456688888888888888876543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5.9e-05 Score=54.11 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|.+.++++.+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4567788888999999999999999999999999999999999999999999999999999988654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00047 Score=54.05 Aligned_cols=111 Identities=9% Similarity=-0.104 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHH
Q 045069 386 GFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEE 461 (554)
Q Consensus 386 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 461 (554)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..+...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 34443 667777888888999999998873 456778888888887 789999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 505 (554)
|.+++++.....++.....|...|.. .++.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999997766788888899999988 899999999999998874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.3e-05 Score=56.30 Aligned_cols=80 Identities=10% Similarity=-0.075 Sum_probs=49.1
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 426 GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
|...|++..+ ..+.+...+..+...|...|++++|++.+++.. .+.+...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555544 123345556666666666666666666666543 244556666677777777777777777777777
Q ss_pred cCCC
Q 045069 504 NDPR 507 (554)
Q Consensus 504 ~~p~ 507 (554)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=7.8e-05 Score=58.90 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIY-----------GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
++|+..|++.. .+....+|..+..+|... |++++|++.|+++++.+|++..+...+- ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHH
Confidence 35555555432 244455555555555544 5899999999999999999876555542 334
Q ss_pred HHHHHHHHHhhcC
Q 045069 527 DVMKLRDDIVDNG 539 (554)
Q Consensus 527 ~A~~~~~~~~~~~ 539 (554)
+|.++.-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5556555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.8e-05 Score=55.31 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCh
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP--KPVDPA-VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 525 (554)
.+..+.+.|++++|++.++++. .+.+.. .+..+..++...|++++|+..++++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4456677788888888887753 244566 77888888888899999999999999998888876633 455
Q ss_pred hHHHHHHHHHhhc
Q 045069 526 DDVMKLRDDIVDN 538 (554)
Q Consensus 526 ~~A~~~~~~~~~~ 538 (554)
.++...+++....
T Consensus 78 ~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 78 MDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHCCTTHH
T ss_pred HHHHHHHHHHhcc
Confidence 6666666655443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=69.10 Aligned_cols=123 Identities=12% Similarity=0.005 Sum_probs=76.8
Q ss_pred HHcCCChHHHHHHHHHHHHc---CCCC---CH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHh--CCCCC----hhHHHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEK---GLNP---DE-STFSALLCACCHGGLVNDGREIFTRMTEEY--GIQAK----TEHYIY 448 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~---g~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~ 448 (554)
+...|++++|..++++.++. -+.| +. .+++.|...|...|++++|..++++..+-. -+.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566677776666665542 1112 22 257777777777777777777777654320 12222 455677
Q ss_pred HHHHHHhcCChHHHHHHHHhCC---------CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP---------KPVD-PAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
|...|...|++++|+.++++.. ..|+ ..+...+..++...+.+++|+..|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888887777642 1121 223345556677788888999888888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=52.39 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCch-hHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-YKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+..+...|++++|+..++++++.+|+++. .+..++.+|...|++++|++.++++++..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3456778999999999999999999999999 99999999999999999999999999876543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=69.62 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-----C---CCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN-----D---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++.|+.+|...|++++|+.+++++++. . |+....+..|+.+|..+|++++|+.++++++
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344444444444444444444444443 1 2223345555555666666666666555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.022 Score=42.65 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=104.3
Q ss_pred HHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 376 NSVILG--LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 376 ~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
..|+.+ +.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+-+.+.
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------- 72 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------- 72 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG-------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH-------------
Confidence 334443 44568888888888888763 345567777766666667677777777775532222
Q ss_pred HhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 454 GLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.+|+......-+-.+. .+...+...+.....+|+-++-..++..+....|.++.+...++.+|.+.|+..+|.+++.
T Consensus 73 -~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 -KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp -GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 2344444444443332 2344556677788899999999999999878888899999999999999999999999999
Q ss_pred HHhhcCCc
Q 045069 534 DIVDNGLR 541 (554)
Q Consensus 534 ~~~~~~~~ 541 (554)
++-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999875
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.39 E-value=9.9e-05 Score=68.49 Aligned_cols=237 Identities=11% Similarity=0.068 Sum_probs=133.5
Q ss_pred HhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccC
Q 045069 139 SITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEP 218 (554)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 218 (554)
+.+|..|..+....+++.+|++.|=+. .|+..|..+|.+..+.|.++.-..++.-.++..- ++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 344555555555555555555544332 3444555555555555655555555544433322 222223455555555
Q ss_pred CccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc------------------------CCCChhhH
Q 045069 219 SLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL------------------------FHPDLVTW 274 (554)
Q Consensus 219 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------------~~~~~~~~ 274 (554)
++..+-++++. .|+..-...+.+-|...|.++.|.-+|..+ ...++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 55444333221 233333344444455555555555444443 12467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc
Q 045069 275 SALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC 354 (554)
Q Consensus 275 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (554)
-.+-.+|...+.+.-|.-.--.++-. || ....++..|-..|.+++...+++.-.... ......++-|.-.|++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 99888999998887765443333321 11 12235566778888888888887765322 34667788888888874
Q ss_pred CChHHHHHHHhccCC-----------CCcchHHHHHHHHHcCCChHHHHH
Q 045069 355 GYLGLGIQVFETMSE-----------RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 355 g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
++++..+.++..-+ .....|..++-.|.+-.+++.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 56666665554331 244578888888888888887653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00021 Score=68.12 Aligned_cols=91 Identities=11% Similarity=-0.133 Sum_probs=47.5
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------C-CCChhh
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEY--GIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP---------K-PVDPAV 477 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~-~~~~~~ 477 (554)
+..+.+.|++++|+.++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++. . +.-..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444555666666666666655320 11222 3445556666666666666666655432 0 112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..|...|...|++++|+.+++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445555555555666666555555555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00051 Score=50.31 Aligned_cols=64 Identities=14% Similarity=-0.112 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+...+..+..+|...|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34455555566666666666666665543 23445566666666666666666666666666553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.2 Score=49.81 Aligned_cols=259 Identities=11% Similarity=0.022 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
.-...+..+.+.+++.....++.. .+.+...-.....+....|+..+|....+.+-..| ...+..+..++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334555666777788877776666 44455555566677777888777777666665554 2333455666666666555
Q ss_pred cchh--HHHHHHHHHhc-----------CCchH-HHHHHHHHHHHccCChHHHHHHHhccCCCCcc---hHHHHHHHHHc
Q 045069 322 VWPG--AVIHGYVIQHG-----------FELSV-MVSSALVDMYSKCGYLGLGIQVFETMSERNII---TYNSVILGLGL 384 (554)
Q Consensus 322 ~~~a--~~~~~~~~~~~-----------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~ 384 (554)
+... ..-+..+...| ++++. .....++..+. +...+....... .++.. .+...+.-+.+
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 4432 22222222222 11111 11122222222 222233322221 11211 11112223333
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDEST----FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (554)
++.+.|...+....+.+ ..+... ...+.......+...++...+..... ..++.....-.+....+.|+++
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHH
Confidence 37889999998887643 223332 33344344455535666677766543 2344444455555566789999
Q ss_pred HHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 461 EAYSFIWSLPKPV--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 461 ~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.|.+.|+.+...+ ......-+..++...|+.++|..+|+++.+ + ..+|..+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 9999999997532 333345566677888999999999999875 3 3556655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0085 Score=54.61 Aligned_cols=68 Identities=9% Similarity=-0.035 Sum_probs=39.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.++.++..+...+...|++++|...+++++..+|+ ...+..++.++.-.|++++|.+.++++.+.++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 445555555555555556666666666666666542 44455556666666666666666666655544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0039 Score=56.85 Aligned_cols=140 Identities=12% Similarity=-0.002 Sum_probs=98.0
Q ss_pred CCCcchHHHHHHHHH--cCC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc----CC-chHHH---HHHHHHhH
Q 045069 369 ERNIITYNSVILGLG--LHG---FTYQAFEFFRDIIEKGLNPDE-STFSALLCACCH----GG-LVNDG---REIFTRMT 434 (554)
Q Consensus 369 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~----~~-~~~~a---~~~~~~~~ 434 (554)
..+...|...+.+.. ..+ +..+|..+|++.++ ..|+. ..|..+..+|.- .+ ..... ...++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 356778888887643 333 35789999999999 67774 356655555531 11 11111 11222211
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 435 EEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
.....+.+..++..+.-.+...|++++|...++++.. .|+...|..+...+...|+.++|.+.++++...+|..++
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 1113356788888888888888999999999999642 567777778888899999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0022 Score=61.00 Aligned_cols=95 Identities=9% Similarity=-0.089 Sum_probs=59.9
Q ss_pred cCCchHHHHHHHHHhHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-ChhhHHHHH
Q 045069 419 HGGLVNDGREIFTRMTEEY--GIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP---------KPV-DPAVSGALL 482 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~ 482 (554)
..|++++|+.++++..+.. -+.|+ ..+++.++.+|...|++++|+.++++.. ..| -..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456667766666654421 12222 3556667777777777777777766642 112 234567778
Q ss_pred HHHHhcCChHHHHHHHHHHHhc-----CCCCchhHH
Q 045069 483 SCCHIYGNSDLAEIVAHQLFEN-----DPRKGAYKV 513 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 513 (554)
..|...|++++|+.+++++++. .|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 8888888888888888888776 466665443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0032 Score=59.93 Aligned_cols=90 Identities=21% Similarity=0.147 Sum_probs=58.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC---CCCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHh--CCCCC----hhH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKG---LNPDE----STFSALLCACCHGGLVNDGREIFTRMTEEY--GIQAK----TEH 445 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~ 445 (554)
+..+.+.|++++|..++++..+.. +.|+. .+++.+..+|...|++++|+.++++..+-+ -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455666778888888887777531 22221 257777777878888888888877765421 12222 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
++.|...|...|++++|+.++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 67777778888888888777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0012 Score=51.42 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCC-C-C--ChhhHHHHHHHHHhcCChHHH
Q 045069 422 LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG---NLEEAYSFIWSLPK-P-V--DPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~~~A 494 (554)
....+.+-|.+..+. -+++..+.-.+..++++.+ +.++++.++++... . | ....+..+..++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445566666666552 3367777777777888877 55688888877542 2 3 356667777788888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHH
Q 045069 495 EIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l 515 (554)
.+.++++++.+|++.......
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 888888888888776665554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.05 Score=57.02 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=61.8
Q ss_pred HHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHH
Q 045069 250 YARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
....|+++.|.++.+.+ .+...|..+...+.+.|+++.|...|..+.. |..+...+...|+.+....+.
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 45668888888887665 3457888888888888888888888887643 333444444455555544444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHh
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFE 365 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 365 (554)
+.....|- ++....+|.+.|++++|.+++.
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 44444331 2233344555677777765554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0045 Score=53.99 Aligned_cols=72 Identities=10% Similarity=-0.048 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHc-cCChhHHHHHHHHHhhcCCccCCCe
Q 045069 475 PAVSGALLSCCHI-----YGNSDLAEIVAHQLFENDPRK-GAYKVMLSNTYAE-DGRWDDVMKLRDDIVDNGLRKEAGV 546 (554)
Q Consensus 475 ~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 546 (554)
...|..+...|.. -|+.++|.+.|+++++++|+. ...+...++.+++ .|+.++|.+++++.+...+...|+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 4566667766766 489999999999999999975 8899999988888 4999999999999998887765554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0099 Score=42.42 Aligned_cols=71 Identities=10% Similarity=-0.058 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 440 QAKTEHYIYMVKLLGLAGN---LEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+.++..+..+..++...++ .++|..++++.. .+.++..+..+...+...|++++|+..|+++++.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4566677777777754444 688888887764 4667788888888888999999999999999998888443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0058 Score=44.90 Aligned_cols=71 Identities=15% Similarity=0.052 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP---------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+..++..+.+.|+++.|..+++.+. ..+....+..+..++.+.|+++.|...++++.+..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444455555555555555554431 1235667788889999999999999999999999999988766663
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.045 Score=57.39 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=57.6
Q ss_pred HHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 045069 351 YSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
....|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445677777777766553 446777777777777777777777776643 223333444456655554444
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
+..... | -++.-..+|.+.|++++|++++.+
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 444332 1 123333445556666666666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.012 Score=43.05 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFEND-------PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+..-...++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455678888999999999999999999872 34567889999999999999999999999987654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.02 Score=57.92 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
..-...|...|+++.|+.+.++++..-|.+...+..|+.+|...|+|+.|+-.+..+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3344557788999999999999999999999999999999999999999999999884
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.025 Score=44.10 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---chHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHHHhcCChHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGG---LVNDGREIFTRMTEEYGIQA--KTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
.+.+-|.+..+.|. ++..+...+..++++.+ +.+++..++++..+. . .| ....+..+.-++.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444443332 34444444444455544 334555555555443 2 12 23333444444555555555555
Q ss_pred HHHhC
Q 045069 465 FIWSL 469 (554)
Q Consensus 465 ~~~~~ 469 (554)
+++.+
T Consensus 93 y~~~l 97 (152)
T 1pc2_A 93 YVRGL 97 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.81 E-value=2.2 Score=44.32 Aligned_cols=116 Identities=9% Similarity=0.025 Sum_probs=48.7
Q ss_pred HHHccCChHHHHHHHhccCC-CCcchHHHHH--HHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhcCCc
Q 045069 350 MYSKCGYLGLGIQVFETMSE-RNIITYNSVI--LGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFS---ALLCACCHGGL 422 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~~~ 422 (554)
.+...|+.+....++..+.+ .+......+. -++...|+.+.+..+++.+... .++. -|. .+.-+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence 34445555554544443321 1222222222 2333455655555555555542 2222 222 23334556666
Q ss_pred hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
.....+++..+... ...++.-...+.-++...|+.+.+.++++.+.
T Consensus 576 ~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 576 NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 55555566665542 22222222222223333444444455554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.16 Score=39.04 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhcCCch------HHHHHHHHHhHHHhCCCCChh-HHHHHHHH------HHhcCChHHHHHHHHhCC--
Q 045069 406 DESTFSALLCACCHGGLV------NDGREIFTRMTEEYGIQAKTE-HYIYMVKL------LGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~-- 470 (554)
|..+|-..+....+.|+. ++..++|++... .++|+.. .+...+.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445666666666666777 777888888877 4777531 11111111 122356666666665542
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.+.-...|......-.++|++..|..++.+++...|.+.......
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 112255555555555666666666666666666666555444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.37 Score=36.06 Aligned_cols=75 Identities=9% Similarity=-0.053 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHhcCChHH---HHHHHHhCCCC--C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 441 AKTEHYIYMVKLLGLAGNLEE---AYSFIWSLPKP--V--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
++..+--.+..++.+...... ++.+++.+... | .......|..++.+.|++++|.+.++.+++..|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444444444444444333 44455443321 1 2334556677788888888888888888888888876655
Q ss_pred HH
Q 045069 514 ML 515 (554)
Q Consensus 514 ~l 515 (554)
..
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.57 Score=37.53 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=17.0
Q ss_pred cCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHH
Q 045069 354 CGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444443332 2233344444444444444444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.033 Score=41.68 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=59.5
Q ss_pred CCChhhHHHHHHHHHhcCChHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 472 PVDPAVSGALLSCCHIYGNSDL---AEIVAHQLFEND-P-RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.++..+-..+.+++.+.++... ++.+++...+.. | ......+.|+-++.+.|++++|+++++.+++..+..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 5778888888899988876555 899999988886 5 466788888889999999999999999999877644
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.87 Score=36.48 Aligned_cols=130 Identities=9% Similarity=-0.021 Sum_probs=92.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3456789999999998766 3678999999999999999999999999865 45566667778888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 460 EEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+.-.++-+...... -++....++...|+++++.+++.+.-+. ..-+-.....|-.+.|.++.+++-
T Consensus 77 e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHHHhC
Confidence 77666654432211 2344455667889999999998764321 111112334678888888888764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.64 Score=34.98 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=40.4
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
......+..+..+|+-++-.+++.++.. ..+|++.....+..+|.+.|+..+|.+++.+.-++ |+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 3445555666666766666666666433 24566666666677777777777777777766664 44
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.33 Score=37.00 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
...|..++.+.|++++|.++.+.+++..|++..
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 334444455555555555555555555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=3.3 Score=39.39 Aligned_cols=258 Identities=9% Similarity=0.010 Sum_probs=132.3
Q ss_pred cCChHHHHHHHHHhHHc-----CCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHh-cCCCCHhHHHHHHHHHH----c
Q 045069 82 AHRFNDAKSLFKNLLRT-----QLKPDNFTYACITRACSENSDLPGLRFVHGGAIVS-GLGRDSITSSALVTAYS----K 151 (554)
Q Consensus 82 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~----~ 151 (554)
.|++++|++.+..+.+. +...+......++..|...|+++...+.+..+.+. |..+ .....++..+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 37788888877666543 12223445667888888999998887777665543 3222 22233333222 2
Q ss_pred CC--CHhHHHHhhcccCC---CCc-------chHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC
Q 045069 152 LS--LIDEAIKVFDGVSD---PDL-------VLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS 219 (554)
Q Consensus 152 ~g--~~~~A~~~~~~~~~---~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 219 (554)
.. +.+.-+.+.+.... .-. .....|...+...|++.+|.+++..+...-...+....
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~----------- 175 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE----------- 175 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-----------
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-----------
Confidence 22 22222233333322 111 11245667777888888888888887542111111110
Q ss_pred ccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc------CC--CC--hhhHHHHHHHHHhcCCHHH
Q 045069 220 LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL------FH--PD--LVTWSALITGYSQQGDYGK 289 (554)
Q Consensus 220 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~--~~--~~~~~~l~~~~~~~g~~~~ 289 (554)
-...+..-+..|...+++..|..+++++ .. |+ ...+...+..+...+++.+
T Consensus 176 -------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 176 -------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 0122233444555556666555555543 11 11 1234455566666777777
Q ss_pred HHHHHHHHHhC-CCCCCHHHH----HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc--CChHHHHH
Q 045069 290 ALYYFRKLNMQ-GKKADPVLI----ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC--GYLGLGIQ 362 (554)
Q Consensus 290 a~~~~~~m~~~-~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~ 362 (554)
|...|.+.-.. ....+...+ ..++.+..-.+....-..++........-++...|..++.+|... .+++.+.+
T Consensus 237 a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~ 316 (445)
T 4b4t_P 237 VAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQK 316 (445)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHH
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHH
Confidence 77766665432 111122211 112222222222233334444444444456778888999988764 45778888
Q ss_pred HHhccCCCC
Q 045069 363 VFETMSERN 371 (554)
Q Consensus 363 ~~~~~~~~~ 371 (554)
.|.....++
T Consensus 317 ~~~~~L~~~ 325 (445)
T 4b4t_P 317 TYEPVLNED 325 (445)
T ss_dssp HTCSSTTTC
T ss_pred HHHHHhccc
Confidence 887765443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.30 E-value=2.7 Score=37.38 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHH----HHHHHHHCCCCCChhhHHHHHHHc
Q 045069 140 ITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQ----LFDWMLRLGKTPDEYTLVGLISGL 215 (554)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~ 215 (554)
..|.++..=|.+.+++++|++++..- ...+.+.|+...|-+ +++...+.+++++..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35566677788889999999885432 344566777665555 455566678888888877777766
Q ss_pred ccCCccc-hhhHHHHHHHH----hc--CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhc---C
Q 045069 216 WEPSLLS-VGQGIHGFCLK----SS--FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQ---G 285 (554)
Q Consensus 216 ~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---g 285 (554)
......+ .-..+.+.+++ .| ...++.....+...|.+.|++.+|...|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533222 22334444443 22 2357788888888899999998888877533323455555555444443 4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVI 333 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 333 (554)
...++--.+-+ .+-.|...|+...|..+++...
T Consensus 183 ~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 43332222111 1223445667777777776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.26 E-value=2.9 Score=37.50 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=99.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEF----FRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
+|.++..=|.+.+++++|++++-.- ...+.+.|+..-|..+ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444555577778888887765532 2345556665554443 455556778888888777777766
Q ss_pred cCCchH-HHHHHHHHhHH---HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 045069 419 HGGLVN-DGREIFTRMTE---EYG--IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 419 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
....-+ .=..+.+++.+ +.| -.-|+.....+...|.+.+++.+|...|- ....+++..+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 554311 11222222221 123 23467788899999999999999998883 222333456655554444433322
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++--++-+ .+--|.-.|+...|...++.+.+
T Consensus 185 e~dlfiaR--------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCAR--------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHH--------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222221 22346778899999998877765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.13 Score=44.86 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhc-----CCchHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHHHhc-
Q 045069 388 TYQAFEFFRDIIEKGLNPD---ESTFSALLCACCH-----GGLVNDGREIFTRMTEEYGIQA--KTEHYIYMVKLLGLA- 456 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~- 456 (554)
...|...+++.++ +.|+ ...|..+...|.+ -|+.++|.+.|++..+ +.| +..++..+.+.+++.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence 4455556666666 4555 2355556655655 3666666666666655 233 245555555555542
Q ss_pred CChHHHHHHHHh
Q 045069 457 GNLEEAYSFIWS 468 (554)
Q Consensus 457 g~~~~A~~~~~~ 468 (554)
|+.+++.+++++
T Consensus 254 gd~~~a~~~L~k 265 (301)
T 3u64_A 254 NNRAGFDEALDR 265 (301)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.26 Score=37.08 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
.+..|..++.+.|++++|.+..+.+++..|++..
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3344444455555555555555555555554443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.38 E-value=4.1 Score=36.27 Aligned_cols=170 Identities=9% Similarity=-0.050 Sum_probs=100.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFE----FFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
.|.++..=|.+.+++++|++++..- ...+.+.|+...|.. +++-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445555577778888888776532 334556677655554 4555556788888888777777765
Q ss_pred cCCchH-HHHHHHHHhHH---HhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc---C
Q 045069 419 HGGLVN-DGREIFTRMTE---EYGI--QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY---G 489 (554)
Q Consensus 419 ~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 489 (554)
....-+ .=.++++++.+ +.|- .-++.....+...|.+.|++.+|...|-.. ...++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCC
Confidence 532111 11223333321 1122 236788899999999999999999887522 122455555555544444 4
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
...++--++-++ +--|.-.|+...|..+++...+.
T Consensus 183 ~~~e~dlf~~Ra--------------VL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAEFFSRL--------------VFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHH--------------HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHHH
Confidence 433333322222 12456778999999998887643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.17 E-value=4.6 Score=36.23 Aligned_cols=133 Identities=13% Similarity=0.014 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHH----HHHHHHCCCCCChhhHHHHHHHcc
Q 045069 141 TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQL----FDWMLRLGKTPDEYTLVGLISGLW 216 (554)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 216 (554)
+|.++..=|.+.+++++|++++-.- ...+.+.|+...+-++ ++.+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556666788889999999875432 3445566776555444 455566788888888777777665
Q ss_pred cCCccch-hhHHHHHH----HHhc--CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhc
Q 045069 217 EPSLLSV-GQGIHGFC----LKSS--FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQ 284 (554)
Q Consensus 217 ~~~~~~~-a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (554)
....-+- -..+.+.+ .+.| ...|+.....+...|.+.+++.+|...|-.-..+.+..+..++.-+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 5443221 12223333 3333 3456677777888888888888887777432333334554444444333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.25 Score=38.89 Aligned_cols=123 Identities=16% Similarity=0.058 Sum_probs=65.0
Q ss_pred cCCCCCHH--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 045069 401 KGLNPDES--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT-------EHYIYMVKLLGLAGNLEEAYSFIWSLP- 470 (554)
Q Consensus 401 ~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~- 470 (554)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34555444 34445666777888888888777765532334442 355667777777788777777776631
Q ss_pred ------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 471 ------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 471 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..+.. ...+. ...... .-. ..+.+.+..+.++.+|.+.|++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~p-------~s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSASTP-------QSQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCc--ccccc----ccCCCc-------ccc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11111 00000 000000 000 0133446777788899999999999999887643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.81 E-value=0.91 Score=34.97 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=21.9
Q ss_pred CCcchHHHHHHHHHhcCCh------HHHHHHHHHhHHcCCCCC
Q 045069 67 RSVFLWNSIIRAYALAHRF------NDAKSLFKNLLRTQLKPD 103 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~p~ 103 (554)
.|..+|-..+...-+.|++ ++.+++|++.... ++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 3555666666666556666 6666666666654 5554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=9.3 Score=37.97 Aligned_cols=334 Identities=11% Similarity=-0.073 Sum_probs=162.0
Q ss_pred HHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccc
Q 045069 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLS 222 (554)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 222 (554)
..-+..+.+.+++...+..+.. ...+...-.....+....|+..+|......+=..| .........++..+.+.|...
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445556666777777766655 32333334445556666666666655555543333 223334444444444333332
Q ss_pred hhh--HHHHHHHHh-----------cCCCchh-HHHHHHHHHHhcCChhhHHHHHhhcCCCChhh---HHHHHHHHHhcC
Q 045069 223 VGQ--GIHGFCLKS-----------SFDSYDY-VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVT---WSALITGYSQQG 285 (554)
Q Consensus 223 ~a~--~~~~~~~~~-----------~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g 285 (554)
... .=+..+... .++++.. ....++..+. +...+....... .++... +..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 211 001111111 1112211 1122222222 222333332222 222221 1112223333 3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASV----LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
+.+.|...+....... ..+......+ .......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 7889999998886544 2333333222 223333443555666666544333 33333444555556779999999
Q ss_pred HHHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 362 QVFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 362 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
..|+.|.... ....-=+..++...|+.++|..+|+.+.+. .+ -|..+. ..+.|..-.. ... .
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~~-----~~~---~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYEL-----KID---K 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCCC-----CCC---C
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCCC-----CCC---C
Confidence 9999987532 122333555777889999999999998752 22 233222 1223321000 000 0
Q ss_pred CCCC-hh-----HHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 439 IQAK-TE-----HYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 439 ~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
..+. .. .-...+..+...|....|...+..+....+......+.......|..+.++....+.
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0010 00 111234556778999988887776544444444455555556778887777665443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.98 Score=35.55 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=28.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC-CCCC-----H--HHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKG-LNPD-----E--STFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
+..+...|.++.|+-+.+.+.... ..|+ . .++..+.+++...+++.+|...|++..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344445555555555554433210 1222 1 144555666666666666666666653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.26 E-value=16 Score=38.13 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=16.3
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHH
Q 045069 106 TYACITRACSENSDLPGLRFVHGGAI 131 (554)
Q Consensus 106 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 131 (554)
-|..++.+..+.++.+.+.++|..+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555566666666666666666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.76 Score=46.59 Aligned_cols=52 Identities=15% Similarity=-0.056 Sum_probs=43.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
.-+...|+++.|+++-++... ..|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 346678999999999999888 56664 48999999999999999999888877
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.04 E-value=1.9 Score=30.42 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++|+.++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 34466677777777789999999999999999999999999999999886 44445677777654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.69 Score=43.22 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=37.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
.++..+...|++++|...+..+...+|-+...+..+..+|.+.|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455566666677666666666677666666666667777777777776666654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.59 E-value=3.2 Score=29.07 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHH
Q 045069 117 NSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (554)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+.-||...|-++-. .+.|-.+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3466888888888877653 33333344566889999999999999999999999988765 4788888888888787
Q ss_pred HHCCCCCChhhH
Q 045069 197 LRLGKTPDEYTL 208 (554)
Q Consensus 197 ~~~~~~p~~~~~ 208 (554)
...| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.35 E-value=15 Score=40.02 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=71.5
Q ss_pred HHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCc----------------
Q 045069 312 VLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNI---------------- 372 (554)
Q Consensus 312 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---------------- 372 (554)
++..+...+..+.+..+... .+.++...-.+..+|...|++++|.+.|++... .+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44444555555554443322 122333334566777888888888888877642 000
Q ss_pred -------chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--H--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC
Q 045069 373 -------ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE--S--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQA 441 (554)
Q Consensus 373 -------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 441 (554)
.-|..++..+.+.+.++.+.++-+..++....-+. . .|..+..++...|++++|...+-.+... ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~-- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL-- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--
Confidence 11444555555666666666655555543211111 1 2455555666666666666655555432 11
Q ss_pred ChhHHHHHHHHHHhcCChH
Q 045069 442 KTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~ 460 (554)
-......++..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 2334444555555444433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.15 E-value=0.66 Score=39.85 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=28.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.+.|+.+.|++....-++.+|.|......|.+.++-.|+|+.|.+-++.+.+..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344555555555555555555555555555555555555555555555444433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.58 E-value=3.5 Score=28.96 Aligned_cols=87 Identities=11% Similarity=0.035 Sum_probs=63.0
Q ss_pred CCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHH
Q 045069 117 NSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (554)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-.. +.|-.+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3467888888888877653 333333445667889999999999999999999999887654 677778887777777
Q ss_pred HHCCCCCChhhH
Q 045069 197 LRLGKTPDEYTL 208 (554)
Q Consensus 197 ~~~~~~p~~~~~ 208 (554)
...| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6654 3444444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=3.6 Score=38.32 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=51.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH----HhCCCCChhHHHHH
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE----EYGIQAKTEHYIYM 449 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 449 (554)
.++..+...|++++|...+..+... -+-+...+..++.++.+.|+..+|++.|+.+.+ .+|+.|+..+-...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3455666778888888888777763 233566888888888888888888888877654 35888887664443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.66 E-value=4.3 Score=33.12 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 491 SDLAEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 491 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
...+..+|..+... .-.-+..|...+..+...|++++|.++|+.-++.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555554 23444555555555666666666666666555544433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.53 E-value=15 Score=33.94 Aligned_cols=162 Identities=12% Similarity=0.026 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHh----cCCchHHHHHHHHHHHHccCC-hHHHHHHHhccCC---CCcchH---
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQH----GFELSVMVSSALVDMYSKCGY-LGLGIQVFETMSE---RNIITY--- 375 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~--- 375 (554)
.....+...|.+.|+.++..+++...... +-.-.......+++.+....+ .+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777666666654321 111233445566666655332 2222333322221 111222
Q ss_pred ---HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--H---HHHHHHHHHHhcCCchHHHHHHHHHhHHHh-CCCCChhHH
Q 045069 376 ---NSVILGLGLHGFTYQAFEFFRDIIEKGLNPD--E---STFSALLCACCHGGLVNDGREIFTRMTEEY-GIQAKTEHY 446 (554)
Q Consensus 376 ---~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 446 (554)
..++..|...|++.+|.+++.++.+.--..| . ..+..-+..|...+++.++...+....... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2456677777777777777777766311111 1 134455556667777777777776665431 122332221
Q ss_pred ----HHHHHHHH-hcCChHHHHHHHHh
Q 045069 447 ----IYMVKLLG-LAGNLEEAYSFIWS 468 (554)
Q Consensus 447 ----~~l~~~~~-~~g~~~~A~~~~~~ 468 (554)
..-+..+. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 11222334 56777777766644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.64 E-value=19 Score=34.09 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHhHHH-hCCCCC----hh
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEK--GLNPD---ESTFSALLCACCHGGLVNDGREIFTRMTEE-YGIQAK----TE 444 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~ 444 (554)
...|...+...|++.+|..++.++... |..+. ...+...++.|...+++.+|..+++++..+ +...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888999999999999998743 22222 124667788899999999999999987532 122222 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----CCChhhHH----HHHHHHHhcCChHHHHHHHHHHHhc-CCCCchhHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVSG----ALLSCCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVML 515 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l 515 (554)
.+...+..+...+++.+|-+.|.++-. ..++..+. .++.+..-.+....-..+....... .-.+...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 567778888889999999988776531 12222221 1222222222222222222222221 11233456667
Q ss_pred HHHHHcc--CChhHHHHHHHHHhh
Q 045069 516 SNTYAED--GRWDDVMKLRDDIVD 537 (554)
Q Consensus 516 ~~~~~~~--g~~~~A~~~~~~~~~ 537 (554)
..+|... .+|+.+.+.+.....
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHhchHhhhHHHHHHHHHHhc
Confidence 6777643 466777666655443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.33 E-value=4.2 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
.-+..+-++.+....+.|++......+.+|-+.+|+..|.++|+-++.+ ..+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 3355666677777789999999999999999999999999999999886 44556678777654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.34 E-value=6.1 Score=27.74 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=56.3
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
...++..|-+.+...+. ....-..-+..+..+|++++|..+.+....||...|-++-. .+.|..+++..-+..+-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667778888877654 22222233446778999999999999999999999877755 477888888777777766
Q ss_pred cC
Q 045069 98 TQ 99 (554)
Q Consensus 98 ~~ 99 (554)
.|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.18 E-value=6.4 Score=42.80 Aligned_cols=63 Identities=10% Similarity=-0.182 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCc----hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDP-RKG----AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.|..++..+.+.+.++.+.++.+.+++..+ ++. ..+..+.+.+...|++++|...+-.+.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 455566666677777777777777766532 222 145556667777777777777776555443
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=85.67 E-value=7.2 Score=30.22 Aligned_cols=49 Identities=6% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 494 AEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 494 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
+..+|+.+... .-..+..|...+..+...|++++|.++++.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 66777777666 35566777777777888888888888888777766554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.49 E-value=6.4 Score=27.69 Aligned_cols=78 Identities=10% Similarity=-0.055 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
...+|..|-+.+...+. ....-..-+..+..+|++++|..+.+....||...|-++-.. +.|..+++..-+..+-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45667777787776654 222222333467788999999999999999999998777653 66777777777766666
Q ss_pred cC
Q 045069 98 TQ 99 (554)
Q Consensus 98 ~~ 99 (554)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.07 E-value=3.1 Score=35.82 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
...+.|++++|+.....-++ .-|-|...-..+++.+|-.|+|+.|.+-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666666666666555 34555666666666666666666666665554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.49 E-value=9.8 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
|.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+-. ....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 3445555666666666777777777777777777777777777777765532 22345555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.01 E-value=8 Score=29.10 Aligned_cols=68 Identities=7% Similarity=0.025 Sum_probs=34.1
Q ss_pred CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCC-CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 473 VDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDP-RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+++.+-..+.+++.+..+ ..+++.+++.+.+..| .....++.|+-++.+.|++++|+++.+.+++..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 344444444444444432 3345555555555554 2344445555555566666666666655555443
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=82.08 E-value=12 Score=29.53 Aligned_cols=48 Identities=4% Similarity=0.057 Sum_probs=24.0
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 494 AEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 494 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+..+|+.+... .-.-+.+|...+..+...|++++|.++|+.-++.+-+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34444444444 2344445555555555555555555555555554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 554 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.82 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.42 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.35 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.24 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.23 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.59 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.59 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.3 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.1 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.81 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.51 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.73 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.03 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.52 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.09 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.6 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.7e-22 Score=188.63 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=189.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 274 WSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 274 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
...........+....+...+....... +-+...+..+...+...|+++.|...++...+.. +.+...+..+...+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 215 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhc
Confidence 3334444555555566655555554432 2234455555566666667777777666666554 3345667777778888
Q ss_pred cCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHH
Q 045069 354 CGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
.|++++|...++...+ .+...+..+...+.+.|++++|+..|++..+ ..|+ ..++..+...+...|++++|.+.
T Consensus 216 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 293 (388)
T d1w3ba_ 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888876552 4455677788888899999999999999988 4554 55788899999999999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
++..... .+.+...+..+...+.+.|++++|++.+++.. .|.++.++..++.++...|++++|+..++++++.+|+
T Consensus 294 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 294 YNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9998873 66778888999999999999999999999864 3556788899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHccCC
Q 045069 508 KGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 508 ~~~~~~~l~~~~~~~g~ 524 (554)
++.++..++.+|.+.||
T Consensus 372 ~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 372 FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-20 Score=177.82 Aligned_cols=356 Identities=13% Similarity=0.061 Sum_probs=266.9
Q ss_pred HHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChh
Q 045069 178 SGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMN 257 (554)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (554)
..+.+.|++++|.+.++++.+.. +-+...+..+...+...|++++|...++.+++.. +.+...+..+..+|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 34445566666666665555432 1123344445555555566666666665555543 224456677777888888888
Q ss_pred hHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 045069 258 SAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ 334 (554)
Q Consensus 258 ~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 334 (554)
+|...+... ...+...+..........+....+............ ................+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhc
Confidence 888888776 233444455555555566666666666655554433 3333444455556667777777777777766
Q ss_pred hcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 045069 335 HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFS 411 (554)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 411 (554)
.. +.+...+..+...+...|++++|...++...+ | +...|..+...+...|++++|...+++....+ ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 44567788888999999999999999987663 3 45678889999999999999999999998853 34566788
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 489 (554)
.+...+.+.|++++|...|++..+ -.+.+..++..+...+...|++++|.+.++... .+.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 889999999999999999999987 244557889999999999999999999998864 4677888999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
++++|+..++++++.+|+++.++..++.+|.+.|++++|++.++++++..+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999988653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.9e-15 Score=134.52 Aligned_cols=241 Identities=11% Similarity=0.010 Sum_probs=153.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
.....+.+.|++++|...|+++.+.. +-+...+..+..++...|+++.|...+.+..+.. +-+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667888999999999999988764 2345677777778888888888888888877665 334566677777777777
Q ss_pred ChHHHHHHHhccCC--CCcchH-HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 356 YLGLGIQVFETMSE--RNIITY-NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTR 432 (554)
Q Consensus 356 ~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 432 (554)
++++|.+.++.... |+.... ....... ...+.......+..+...+.+.+|...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 77777777776542 211100 0000000 000000011111122333455666666666
Q ss_pred hHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 433 MTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
..+...-.++..++..+...+...|++++|+..+++.. .+.+...|..++.++...|++++|++.++++++.+|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 65532223345566667777777777777777777653 3455667777777777777777777777777777777777
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
++..++.+|.+.|++++|++.|+++++.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777777777777788887777777764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.9e-14 Score=128.07 Aligned_cols=268 Identities=10% Similarity=-0.032 Sum_probs=197.4
Q ss_pred HHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 245 VLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
.....+.+.|++++|...|+++ .+.+..+|..+..++...|++++|...+.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4566788999999999999998 33457789999999999999999999999988764 2356778888899999999
Q ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 045069 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
++.|...++......... ............ ..+.......+..+...+.+.+|...+.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999987654211 000000000000 001111111222334455677888888888774
Q ss_pred CC-CCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhH
Q 045069 402 GL-NPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVS 478 (554)
Q Consensus 402 g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 478 (554)
.. .++...+..+...+...|++++|...+++.... .+-+..++..++..|.+.|++++|++.+++.. .+.++..+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 32 235667888888999999999999999999874 34467888999999999999999999998864 36678889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-----------hHHHHHHHHHccCChhHHHHHH
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-----------YKVMLSNTYAEDGRWDDVMKLR 532 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~~ 532 (554)
..++.+|.+.|++++|+..|+++++.+|++.. .+..+..++...|+.+.+...-
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999877654 3455666777777777665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=6.5e-10 Score=102.52 Aligned_cols=258 Identities=14% Similarity=0.040 Sum_probs=144.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCcchhHHHHHHHHHhc----C-CchHHHHHHHHHH
Q 045069 280 GYSQQGDYGKALYYFRKLNMQGKKAD----PVLIASVLAAAAKSANVWPGAVIHGYVIQHG----F-ELSVMVSSALVDM 350 (554)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~ 350 (554)
.+...|++++|+.++++..+.....+ ...+..+..++...|++++|...++...+.. . ......+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34445555555555554443321111 1123334444445555555555555443221 0 1112334445555
Q ss_pred HHccCChHHHHHHHhccCC-------CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCC----CCCHHHHHHHHH
Q 045069 351 YSKCGYLGLGIQVFETMSE-------RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGL----NPDESTFSALLC 415 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~-------~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~ll~ 415 (554)
+...|++..+...+..... +.. ..+..+...+...|+++.+...+........ .....++.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 6666666666665554321 111 2344455666777777777777777665321 112334555556
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCC--C----CChhhHHHHHHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--P----VDPAVSGALLSC 484 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~~l~~~ 484 (554)
.+...+++..+...+.+.........+ ...+......+...|++++|...+.+... + .....+..+..+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 666777777777776665543211111 23345566667777888888888777542 1 122344556677
Q ss_pred HHhcCChHHHHHHHHHHHhc------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 485 CHIYGNSDLAEIVAHQLFEN------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+...|++++|...+++++.. .|.....+..++.+|.+.|++++|.+.+++.++
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888888888888877643 345556777788888888888888888887765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.8e-10 Score=102.45 Aligned_cols=224 Identities=10% Similarity=0.068 Sum_probs=159.6
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC-ChHHHHHHHhccCC---CCcchHHHHHHHHH
Q 045069 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG-YLGLGIQVFETMSE---RNIITYNSVILGLG 383 (554)
Q Consensus 308 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 383 (554)
.++.+-..+.+.+..++|...++.+++.. +-+...|+....++...| ++++|+..++...+ .+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45555566777788888888888888875 455667777777777766 47888888887653 44567888888888
Q ss_pred cCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC----
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN---- 458 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 458 (554)
+.|++++|+..++++.+ ..| +...|..+...+...|++++|+..++++.+. -+.+...|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 88888888888888888 444 4567888888888888888888888888773 34456677777666665554
Q ss_pred --hHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHc--cCChhHHHH
Q 045069 459 --LEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK--GAYKVMLSNTYAE--DGRWDDVMK 530 (554)
Q Consensus 459 --~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~--~g~~~~A~~ 530 (554)
+++|++.+.++. .|.+...|..+...+.. ...+++.+.++.+.+..|+. +..+..++.+|.. .+..+.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 567777776653 35566677666655443 44577788888887776643 4455566666654 367777877
Q ss_pred HHHHHhh
Q 045069 531 LRDDIVD 537 (554)
Q Consensus 531 ~~~~~~~ 537 (554)
.+++..+
T Consensus 279 ~~~ka~~ 285 (315)
T d2h6fa1 279 ILNKALE 285 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=8.2e-09 Score=94.87 Aligned_cols=285 Identities=9% Similarity=-0.050 Sum_probs=188.2
Q ss_pred HHHHHHhcCChhhHHHHHhhc--CCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHH
Q 045069 246 LVSMYARCNCMNSAYHVFNSL--FHPD------LVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KAD----PVLIASV 312 (554)
Q Consensus 246 l~~~~~~~~~~~~a~~~~~~~--~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l 312 (554)
....+...|++++|.+.+++. ..|+ ...+..+...+...|++++|...+++..+... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 445566777777777777765 1122 23466667778888888888888877654211 111 2244555
Q ss_pred HHHHhccCCcchhHHHHHHHHHh----cCC---chHHHHHHHHHHHHccCChHHHHHHHhccCC--------CCcchHHH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQH----GFE---LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--------RNIITYNS 377 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ 377 (554)
...+...|++..+...+...... +.. .....+..+...+...|+++.+...+..... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 56777788888888877765432 111 1223556677788888999988888876542 11234555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc--CCCCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC---ChhHHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEK--GLNPDE----STFSALLCACCHGGLVNDGREIFTRMTEEYGIQA---KTEHYIY 448 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~ 448 (554)
+...+...+++..+...+.+.... ...... ..+..+...+...|++++|...+++.... .... ....+..
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHH
Confidence 566677888888888888776642 111111 23555666778899999999999887652 2111 1344566
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-------C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---------Cchh
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP-------K-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR---------KGAY 511 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~ 511 (554)
+..++...|++++|.+.++++. . +.....+..+..++...|++++|.+.++++++..+. ....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 7888999999999999988753 1 223456777888899999999999999999887322 1223
Q ss_pred HHHHHHHHHccCChhHHHHH
Q 045069 512 KVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 512 ~~~l~~~~~~~g~~~~A~~~ 531 (554)
...+...+...|+.+++.+-
T Consensus 337 ~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHH
Confidence 44455667777888887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=2.7e-10 Score=104.05 Aligned_cols=263 Identities=9% Similarity=-0.104 Sum_probs=180.5
Q ss_pred HhcCChhhHHHHHhhcC--CCC-hhhHHHHHHH----------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 045069 251 ARCNCMNSAYHVFNSLF--HPD-LVTWSALITG----------YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAA 317 (554)
Q Consensus 251 ~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~----------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 317 (554)
...+..++|.++++.+. .|+ ...|+..-.. +...|++++|+..++...+.. +-+...+..+..++.
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 33344467777777762 233 3344332222 233445788888888887653 334455555655555
Q ss_pred ccC--CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHH
Q 045069 318 KSA--NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 318 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 392 (554)
..+ +++.+...+..+.+.........+......+...+..++|+..++.+.+ .+...|+.+...+.+.|++++|.
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 554 4678888888888876433333344555777788999999999998885 34557888888888888888877
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK- 471 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 471 (554)
..+++..+ +.|+.. .+...+...+..+++...+..... .-+++...+..++..+...|+.++|...+.+...
T Consensus 199 ~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 199 PQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66655544 222222 222334455666777777777766 3455566667777788888999999999888653
Q ss_pred -CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 472 -PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 472 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
+.+..++..++.++...|+.++|...++++++.+|.+..+|..|...+.-
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 34567778888899999999999999999999999999999888766654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.7e-09 Score=94.97 Aligned_cols=225 Identities=8% Similarity=0.014 Sum_probs=164.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA-NVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
...|+.+...+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|...++...+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3556777778889999999999999999863 334456677777777766 5899999999998886 556888999999
Q ss_pred HHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCc---
Q 045069 350 MYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGL--- 422 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~--- 422 (554)
.+.+.|++++|+..++.+.+ .+...|..+...+...|++++|+..++++++ +.| +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccch
Confidence 99999999999999998874 4567899999999999999999999999999 455 45577776666555444
Q ss_pred ---hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCChhhHHHHHHHHHh--cCChHH
Q 045069 423 ---VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP----KPVDPAVSGALLSCCHI--YGNSDL 493 (554)
Q Consensus 423 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~--~~~~~~ 493 (554)
+++|...+.+..+. .+.+...|..+...+...| .+++.+.++... ...+...+..++..+.. .++.+.
T Consensus 199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 67888889888773 4456777777776665544 455666555432 23344555555555433 244444
Q ss_pred HHHHHHHHH
Q 045069 494 AEIVAHQLF 502 (554)
Q Consensus 494 A~~~~~~~~ 502 (554)
+...++++.
T Consensus 276 ~~~~~~ka~ 284 (315)
T d2h6fa1 276 KEDILNKAL 284 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=9.1e-10 Score=96.43 Aligned_cols=199 Identities=9% Similarity=-0.121 Sum_probs=102.0
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHc
Q 045069 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGL 384 (554)
Q Consensus 308 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 384 (554)
++..+..++.+.|+++.|...|+..++.. +-++.+|..+..+|.+.|++++|+..|+++.+ | +..++..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444455555666666666666655543 33455666666777777777777777766552 2 34456666677777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
.|++++|...|++..+.. +.+......+..++.+.+..+.+..+...... ..++...+.. +..+...........
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 777777777777776642 12233333333334444444444444443333 2222222221 122211111111111
Q ss_pred HH-HhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 045069 465 FI-WSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 465 ~~-~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
.. ..... +....++..+...+...|++++|...|++++..+|++...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 11 11111 12233455566677777777777777777777777665443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.4e-09 Score=95.24 Aligned_cols=196 Identities=13% Similarity=0.034 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCA 416 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 416 (554)
..++..+..+|.+.|++++|...|++..+ .+..+|+.+..++.+.|++++|+..|+++.+ +.|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHH
Confidence 45677788899999999999999998773 4567899999999999999999999999999 4554 4578888999
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHHHH----hcCCh
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSCCH----IYGNS 491 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~ 491 (554)
+...|++++|...|++..+. .+.+......+...+.+.+..+.+..+...... .+....+. ++..+. ..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHH
Confidence 99999999999999999884 344455544455555566655555444433221 11111121 222222 12234
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+.+...+.......|.....+..++.+|...|++++|.+.+++.+..++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 44444444444456777788899999999999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=8.1e-09 Score=92.68 Aligned_cols=161 Identities=8% Similarity=0.027 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH-
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL- 453 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~- 453 (554)
|...+..+...|+.+.|..+|+++++.........|...+..+.+.|+.+.|.++|+++.+. .+.+...|...+...
T Consensus 102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~ 179 (308)
T d2onda1 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 34444444444444444444444444211111223444444444444444455555444431 222223332222221
Q ss_pred HhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch----hHHHHHHHHHccCChhH
Q 045069 454 GLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA----YKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~ 527 (554)
...|+.+.|.++|+.+.. +.++..|...+..+...|+++.|..+|+++++..|.++. ++...+..-...|+.+.
T Consensus 180 ~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~ 259 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 223444444444444321 333444444444444455555555555555444332221 33333333344455555
Q ss_pred HHHHHHHHhh
Q 045069 528 VMKLRDDIVD 537 (554)
Q Consensus 528 A~~~~~~~~~ 537 (554)
+.++.+++.+
T Consensus 260 ~~~~~~r~~~ 269 (308)
T d2onda1 260 ILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=2.4e-08 Score=89.55 Aligned_cols=186 Identities=9% Similarity=-0.022 Sum_probs=143.4
Q ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-C-cchHHHHHHHHHcCCChHHHHHHHHH
Q 045069 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-N-IITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
.+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 456777777777655555667788888888899999999999988753 3 2 23678888888899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHH-HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----C
Q 045069 398 IIEKGLNPDESTFSALLC-ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----P 472 (554)
Q Consensus 398 m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 472 (554)
+.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...+..+++.+.+.|+.++|..+|++... +
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9885432 3333433332 234568999999999999884 566678899999999999999999999998531 2
Q ss_pred C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 473 V--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 473 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
| ....|...+..-...|+.+.+..+++++.+..|....
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 2 2346888888888899999999999999998876643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=1.8e-09 Score=98.42 Aligned_cols=255 Identities=9% Similarity=-0.067 Sum_probs=177.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HH---HHHHHHhccC-------CcchhHHHHHHHHHhcCCchHHH
Q 045069 275 SALITGYSQQGDYGKALYYFRKLNMQGKKADPVL-IA---SVLAAAAKSA-------NVWPGAVIHGYVIQHGFELSVMV 343 (554)
Q Consensus 275 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~---~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~ 343 (554)
..++......+..++|++++++..+. .|+..+ |+ .++......+ .++++...++...+.. +-+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33444344444568999999998865 465543 32 2333343333 3567777777777665 445556
Q ss_pred HHHHHHHHHccC--ChHHHHHHHhccCC---CCcchHH-HHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 045069 344 SSALVDMYSKCG--YLGLGIQVFETMSE---RNIITYN-SVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCA 416 (554)
Q Consensus 344 ~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 416 (554)
+..+..++...+ ++++|...++.+.+ ++...+. .....+...+.++.|+..++++++. .| +...|..+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~ 187 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 666666655554 47888888887653 3344444 3445667788899999988888874 44 45578888888
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL--PKPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+.+.|++++|...++...+. .|. .......+...+..+++...+... ..++....+..++..+...++.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 88888888887776665542 121 122333445566667777766654 2355566666777788888999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...+.+..+.+|.+..++..++.+|.+.|++++|.++++++++..+
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999988764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.9e-08 Score=75.18 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=49.3
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
..+.+.|++++|+..|++.. .|.++..|..+..++...|++++|+..++++++.+|+++..+..++.++...|++++|
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence 34445555555555555532 2445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhcC
Q 045069 529 MKLRDDIVDNG 539 (554)
Q Consensus 529 ~~~~~~~~~~~ 539 (554)
+..+++.++..
T Consensus 91 ~~~~~~a~~~~ 101 (117)
T d1elwa_ 91 KRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 55555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=9.6e-09 Score=85.78 Aligned_cols=102 Identities=10% Similarity=-0.060 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHH
Q 045069 405 PDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALL 482 (554)
Q Consensus 405 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 482 (554)
|+...+......+.+.|++++|+..|++..+. -|.++..|..++.+|.+.|++++|+..++++.. |.+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44445555555555555555555555555542 233444555555555555555555555555331 33444455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
.++...|++++|+..|+++++..|++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 55555555555555555555554433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=6e-08 Score=72.32 Aligned_cols=106 Identities=12% Similarity=0.010 Sum_probs=91.5
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGN 490 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 490 (554)
-...+.+.|++++|+..|++..+. -+.+...|..+..+|...|++++|++.+.+.. .+.++..|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 355678889999999999999874 45667888999999999999999999998864 47788899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
+++|+..++++++.+|+++.++..+..+-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999988876543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=1.8e-08 Score=74.52 Aligned_cols=89 Identities=15% Similarity=-0.022 Sum_probs=80.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCh
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 525 (554)
.++..+.+.|++++|+..+++.. .|.++.+|..++.++...|++++|+..++++++.+|+++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 45667788899999999998864 3667889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 045069 526 DDVMKLRDDIV 536 (554)
Q Consensus 526 ~~A~~~~~~~~ 536 (554)
++|++.+++.+
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=1.7e-07 Score=83.01 Aligned_cols=194 Identities=15% Similarity=0.025 Sum_probs=119.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HHH
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPD--EST 409 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~ 409 (554)
|......|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|.+.+++..+.- -.+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44445566677777777777765542 11 2366777777888888888888877765421 0111 224
Q ss_pred HHHHHHHHh-cCCchHHHHHHHHHhHHHh---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCC-------h
Q 045069 410 FSALLCACC-HGGLVNDGREIFTRMTEEY---GIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVD-------P 475 (554)
Q Consensus 410 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-------~ 475 (554)
+..+...|. ..|++++|.+.+++..+-. +.++ ...++..++..+...|++++|++.++++.. +.. .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555665664 4688888888888775421 1111 134567788888888999999888877421 111 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHc--cCChhHHHHHHHHHhh
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-----YKVMLSNTYAE--DGRWDDVMKLRDDIVD 537 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 537 (554)
..+...+.++...|+++.|...++++.+.+|..+. ....++.++.. .+.+++|+..|+++.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 22344555667788999999999998888765432 33445555554 3567888888766544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.9e-07 Score=76.62 Aligned_cols=124 Identities=10% Similarity=-0.088 Sum_probs=98.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN 458 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (554)
...+...|+++.|++.|.++ ..|+..+|..+..++...|++++|++.|++..+. -+.+...|..+..++.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 55667889999999988764 4577788888999999999999999999999873 34457788889999999999
Q ss_pred hHHHHHHHHhCC--CCC----------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 459 LEEAYSFIWSLP--KPV----------------DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 459 ~~~A~~~~~~~~--~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+++|++.|++.. .+. ...++..+..++...|++++|.+.++++.+..|..
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999998887742 011 12345567778888999999999999988888864
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.7e-07 Score=74.37 Aligned_cols=119 Identities=6% Similarity=-0.126 Sum_probs=96.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 489 (554)
.....|.+.|++++|...|++..+. -+.+...|..+..+|...|++++|++.|+++. .+.+..+|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3455678889999999999988874 35567888888889999999999999998864 4667788999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHH--HccCChhHHHHHH
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTY--AEDGRWDDVMKLR 532 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~ 532 (554)
++++|...++++.+.+|+++.++..+..+. ...+.+++|....
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999888876654 3445566666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.1e-07 Score=75.48 Aligned_cols=94 Identities=13% Similarity=-0.045 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
...+..|.+.|++++|+..|+++. .+.+...|..+..++...|++++|...++++++.+|.+..++..++.++...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345667889999999999999975 477889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCC
Q 045069 525 WDDVMKLRDDIVDNGL 540 (554)
Q Consensus 525 ~~~A~~~~~~~~~~~~ 540 (554)
+++|.+.++++.+..+
T Consensus 94 ~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 94 FRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.4e-07 Score=75.95 Aligned_cols=89 Identities=11% Similarity=-0.011 Sum_probs=81.8
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHH
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
...+...|++++|++.|.++. ++++.+|..++.++...|++++|++.|+++++.+|+++..+..++.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 455678999999999999875 5678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q 045069 530 KLRDDIVDNG 539 (554)
Q Consensus 530 ~~~~~~~~~~ 539 (554)
+.|++.+...
T Consensus 91 ~~~~kAl~~~ 100 (192)
T d1hh8a_ 91 KDLKEALIQL 100 (192)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999998643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=7.3e-08 Score=80.22 Aligned_cols=96 Identities=7% Similarity=-0.075 Sum_probs=69.5
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHH
Q 045069 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIY 448 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 448 (554)
|+...+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++..+ +.| +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 445555566777788888888888888877742 22445677777788888888888888888754 344 4667777
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 045069 449 MVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~ 469 (554)
++.+|.+.|++++|+..|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888887765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=8.3e-07 Score=78.37 Aligned_cols=203 Identities=8% Similarity=-0.071 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHc--
Q 045069 324 PGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-- 401 (554)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-- 401 (554)
++.+++++..+.+ ++....+..+. -...+++++|.++|. .....|...|++++|.+.|.++.+.
T Consensus 3 ~~~~~l~~aek~~-~~~~~~~~~~~--~~~~~~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~ 68 (290)
T d1qqea_ 3 DPVELLKRAEKKG-VPSSGFMKLFS--GSDSYKFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQK 68 (290)
T ss_dssp CHHHHHHHHHHHS-SCCCTHHHHHS--CCSHHHHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-CcchhHHHHhc--CCccccHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4555666665554 23222222111 012234677776655 4567889999999999999998763
Q ss_pred --CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHh-cCChHHHHHHHHhCCC--
Q 045069 402 --GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGL-AGNLEEAYSFIWSLPK-- 471 (554)
Q Consensus 402 --g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-- 471 (554)
+-.++ ..+|..+..+|.+.|++++|...+++..+-..-..+ ..++..+...|.. .|++++|++.+++...
T Consensus 69 ~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~ 148 (290)
T d1qqea_ 69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 11222 237888999999999999999999987653111111 4456667777754 6999999999987531
Q ss_pred --CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 472 --PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-------YKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 472 --~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.. ...++..++..+...|++++|...++++....|.++. .+...+.++...|+++.|.+.+++..+.
T Consensus 149 ~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11 2345777888999999999999999999998776642 3456666788899999999999999876
Q ss_pred CC
Q 045069 539 GL 540 (554)
Q Consensus 539 ~~ 540 (554)
.+
T Consensus 229 ~~ 230 (290)
T d1qqea_ 229 DP 230 (290)
T ss_dssp --
T ss_pred CC
Confidence 53
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.2e-06 Score=70.07 Aligned_cols=84 Identities=10% Similarity=-0.107 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
+|+.+..+|.+.|++++|++.++... .|.++.++..++.++...|++++|+..|+++++.+|+++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 56778888999999999999998864 4668889999999999999999999999999999999999999998887766
Q ss_pred CChhHH
Q 045069 523 GRWDDV 528 (554)
Q Consensus 523 g~~~~A 528 (554)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.46 E-value=2e-05 Score=68.21 Aligned_cols=226 Identities=12% Similarity=-0.025 Sum_probs=135.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSS 345 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (554)
|+..+..|...+.+.+++++|++.|++..+.| +...+..+-..+.. ..+...+...+....+.+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-------- 69 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-------- 69 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc--------
Confidence 34566666677777888888888888877665 33333333333332 2334444444444443331
Q ss_pred HHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLG----LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC---- 417 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---- 417 (554)
......+...+. ..++.+.|...++...+.|.. .....+...+
T Consensus 70 --------------------------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 70 --------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK 120 (265)
T ss_dssp --------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS
T ss_pred --------------------------cchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC
Confidence 111222222221 234566677777776665432 1111221121
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cC
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YG 489 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 489 (554)
........+...+..... ..+...+..+...|.. ..+...+..+++......++.....+...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 223455666666666544 2445566666666664 45666777777766556677777777766665 56
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcCCc
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 541 (554)
+++.|+..|+++.+.. ++..+..|+.+|.+ ..++++|.++|++..+.|..
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8999999999998874 56788888888876 34899999999999887754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.2e-06 Score=65.14 Aligned_cols=106 Identities=9% Similarity=-0.070 Sum_probs=79.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCC-CCCh---hhHHHHHHH
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG---NLEEAYSFIWSLPK-PVDP---AVSGALLSC 484 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~---~~~~~l~~~ 484 (554)
.++..+...+++++|.+.|++.... -+.++.++..++.++.+.+ +.++|+++++++.. .|++ .++..++.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4566677778888888888888773 4556777777888887654 44568888887543 2322 367788889
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
|.+.|++++|++.|+++++.+|++..+...+..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 99999999999999999999999988777665443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=4.1e-07 Score=67.80 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--chhHHHHHHHH
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG---NSDLAEIVAHQLFENDPRK--GAYKVMLSNTY 519 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 519 (554)
..++..+...+++++|.+.|++.. .+.++.++..++.++.+.+ ++++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457778889999999999999975 4778899999999998654 5567999999999988755 45889999999
Q ss_pred HccCChhHHHHHHHHHhhcCCcc
Q 045069 520 AEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+.|++++|+++++++++..+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~ 105 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQN 105 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhhHHHHHHHHHHHHhCcCC
Confidence 99999999999999999876543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=6.7e-07 Score=71.58 Aligned_cols=113 Identities=6% Similarity=-0.081 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
.+......+.+.|++++|+..|.+..+.....+.... ........ ....++..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~-------~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQA-------LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhch-------hHHHHHHHHHHHHHhh
Confidence 3444555667777777777777776653111111000 00000000 0123566788889999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
|++++|+..++++++.+|+++.++..++.+|...|++++|+..|+++++.++
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.34 E-value=6.1e-06 Score=65.66 Aligned_cols=93 Identities=5% Similarity=-0.047 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
+|..+..+|.+.|++++|+..+++.. .|.+...+..++.++...|++++|+..|+++++.+|+++.+...+..+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46667888899999999999998864 4778889999999999999999999999999999999999998888777666
Q ss_pred CChh-HHHHHHHHHhh
Q 045069 523 GRWD-DVMKLRDDIVD 537 (554)
Q Consensus 523 g~~~-~A~~~~~~~~~ 537 (554)
+... ...+.+.+|.+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 5543 34555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=8.6e-07 Score=67.04 Aligned_cols=89 Identities=8% Similarity=0.097 Sum_probs=43.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-------hHHHHHHHH
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-------YKVMLSNTY 519 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~ 519 (554)
+...+.+.|++++|++.|++.. .|.+...+..+..+|...|++++|++.++++++.+|+++. +|..++.++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444432 2334445555555555555555555555555555444432 233344444
Q ss_pred HccCChhHHHHHHHHHhh
Q 045069 520 AEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~ 537 (554)
...+++++|++.+++.+.
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 455555555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.24 E-value=6.1e-06 Score=64.44 Aligned_cols=74 Identities=7% Similarity=-0.077 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
+|..++.+|.+.|++++|++.++++. .|.+..+|..++.++...|++++|+..|+++++.+|++..+...+..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555566666666666666666542 244556666666666666666666666666666666666655555433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=2e-06 Score=68.77 Aligned_cols=110 Identities=9% Similarity=-0.058 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHh-------------CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CC
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEY-------------GIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KP 472 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 472 (554)
.+......+...|++++|+..|+++.+.. .+.| ....+..+..++.+.|++++|+..++++. .+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 34555666778888888888887765410 0001 12233334444444444554444444432 13
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
.++..|..++.++...|++++|++.|+++++.+|++..+...+..+
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444444444444444445555555554444444444444444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=3.5e-06 Score=67.30 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=72.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP------------------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
....+.+.|++++|++.+.++. .+.....+..+..++.+.|++++|+..++++++.+|+++.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 112 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh
Confidence 3455667788888877776542 1234556677778888889999999999999999999999
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.+..++.+|...|++++|++.|+++++..+
T Consensus 113 a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.22 E-value=2e-06 Score=67.38 Aligned_cols=115 Identities=7% Similarity=-0.082 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
.+..-...+.+.|++.+|+..|++........++.. ......... .....++..+..+|.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKK----NIEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhh----hHHHHHHhhHHHHHHHh
Confidence 344555667777888888887777765211111000 000000000 01224667788899999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
|++++|+..++++++.+|.+..++..++.+|...|++++|+..|++.++.++.
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.1e-07 Score=91.16 Aligned_cols=94 Identities=9% Similarity=-0.133 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
..+..+...+.+.|+.++|...+..........++..++..+...|++++|+..|+++.+.+|+++..|..|+.++...|
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 33444444455555555554443332211112344445555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHhh
Q 045069 524 RWDDVMKLRDDIVD 537 (554)
Q Consensus 524 ~~~~A~~~~~~~~~ 537 (554)
+..+|...|.+.+.
T Consensus 201 ~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 201 DHLTTIFYYCRSIA 214 (497)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHh
Confidence 55555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=3.9e-06 Score=66.83 Aligned_cols=66 Identities=8% Similarity=-0.053 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.++..+..++.+.|++++|+..++++++.+|++...+..++.+|...|++++|++.|+++++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~ 130 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 356667888999999999999999999999999999999999999999999999999999887643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.00062 Score=59.77 Aligned_cols=274 Identities=8% Similarity=0.023 Sum_probs=148.6
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHh
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC 114 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 114 (554)
.||..--....+.|.+.|.++.|..++..+. -|..++..+.+.+++..|.+++.+. -+..+|..+...|
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 4566666677788889999999999998765 4888888999999999988887644 1566888888888
Q ss_pred hcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHH
Q 045069 115 SENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQ 191 (554)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 191 (554)
.+......+ .+...+...++.....++..|-..|.+++...+++.... .+...++.++..|++.+ .++..+
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 877655443 222233344666667788889999999999988886533 56667888888888764 344444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCCh
Q 045069 192 LFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDL 271 (554)
Q Consensus 192 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 271 (554)
.++.. + +......+++.|-+.+-+ ..++..|.+.|.++.|..+.-.-. ++.
T Consensus 154 ~l~~~---s---~~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~-~~~ 204 (336)
T d1b89a_ 154 HLELF---W---SRVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP-TDA 204 (336)
T ss_dssp HHHHH---S---TTSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred HHHhc---c---ccCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence 44332 1 112223344444333333 345566777777777765543321 122
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----------HHHHHHHHhccCCcchhHHHHHHHHHhcCCch
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL-----------IASVLAAAAKSANVWPGAVIHGYVIQHGFELS 340 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (554)
.-....+..+.+..+++...+++....+. .|+... -..++..+.+.+++.....+++...+.+ +
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~ 279 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---N 279 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---C
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---h
Confidence 23344455556666665554444443332 222110 1123333334444444444444443333 1
Q ss_pred HHHHHHHHHHHHccCChHH
Q 045069 341 VMVSSALVDMYSKCGYLGL 359 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~ 359 (554)
..+.+++.+.|...++++.
T Consensus 280 ~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCcchhHH
Confidence 2355555555555555433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.0022 Score=56.09 Aligned_cols=134 Identities=10% Similarity=-0.008 Sum_probs=53.5
Q ss_pred CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHH
Q 045069 168 PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLV 247 (554)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 247 (554)
+|..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+..... + +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHH
Confidence 4444445556666677777777777765432 445555555555555554443321 1 233444444
Q ss_pred HHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 045069 248 SMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 318 (554)
..+.+......|.-+ ......++.....++..|-..|.+++...++...... -.++...++.++..+++
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 444444443332111 1111122223334455555555555555555544321 13344444445554444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=6.9e-06 Score=60.11 Aligned_cols=88 Identities=10% Similarity=-0.058 Sum_probs=55.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL 455 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (554)
.+...+.+.|++++|+..|++.++. .|+ ..+|..+..++.+.|++++|+..|++..+. .+.+...+..++..|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHH
Confidence 3445566667777777777776663 343 446666666677777777777777766652 33345666666666666
Q ss_pred cCChHHHHHHHHh
Q 045069 456 AGNLEEAYSFIWS 468 (554)
Q Consensus 456 ~g~~~~A~~~~~~ 468 (554)
.|++++|++.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6666666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.07 E-value=0.0015 Score=55.89 Aligned_cols=228 Identities=11% Similarity=-0.078 Sum_probs=121.4
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcC-CCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLF-HPDLVTWSALITGYSQ----QGDYGKALYYFRKLNMQGKKADPVLIASVL 313 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 313 (554)
|+..+..|...+...+++++|++.|++.. ..+...+..|...|.. ..+...|...+......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 34566677778888999999999999983 3466677777777766 6688999999988877652 22223333
Q ss_pred HHHh----ccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChH
Q 045069 314 AAAA----KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 314 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 389 (554)
..+. ...+.+.+...++...+.|..... ..+...+.... .......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~---~~l~~~~~~~~---------------------------~~~~~~~ 127 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGC---ASLGGIYHDGK---------------------------VVTRDFK 127 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHCS---------------------------SSCCCHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHH---HhhcccccCCC---------------------------cccchhH
Confidence 2222 234556677777776666532221 11211111100 0112223
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCH----GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEE 461 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 461 (554)
.+...+...... .+...+..+...+.. ..+...+..+++...+. .+......+...|.. ..+.++
T Consensus 128 ~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhh
Confidence 333333333331 123333333333332 23444444454444432 133334444444433 345666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 506 (554)
|..+|.+.....++.....|...|.. ..+.++|.+.|+++.+..+
T Consensus 201 A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 66666665444455555555555543 2366677777777766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=1.2e-05 Score=64.27 Aligned_cols=121 Identities=10% Similarity=-0.021 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHH-HHHHHhCCCCCChhhHHHHHHHHHhcC
Q 045069 411 SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEA-YSFIWSLPKPVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 411 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 489 (554)
..........|++++|.+.|.+...- -+.... .. ...+.+-.. ..-++ +.....+..++.++...|
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l-----~~-~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE---WRGPVL-----DD-LRDFQFVEPFATALV----EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTT-----GG-GTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh---Cccccc-----cc-CcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence 33445667788888888888887652 121100 00 000111110 00010 112356677888899999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh-----cCCccCC
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD-----NGLRKEA 544 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 544 (554)
++++|+..++++++.+|.+...+..++.+|.+.|++.+|++.|+++.+ .|+.|.+
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999999999999999999999999999999999999853 5666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=9.6e-06 Score=62.49 Aligned_cols=127 Identities=16% Similarity=0.061 Sum_probs=72.7
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcC----------CchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHG----------GLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
|-+.+.+++|...|++..+ ..|+ ..++..+..++... +.+++|+..|++..+- -|.+..+|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 3445556677777777766 3343 33555555555432 2334555555555441 222344555555
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 530 (554)
.+|...|+.. ++.. ...+++++|.+.|+++++.+|++..++..|... .+|.+
T Consensus 83 ~~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 5444333210 0000 011246889999999999999998888877644 46777
Q ss_pred HHHHHhhcCC
Q 045069 531 LRDDIVDNGL 540 (554)
Q Consensus 531 ~~~~~~~~~~ 540 (554)
++.++.++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=9.2e-06 Score=62.59 Aligned_cols=99 Identities=12% Similarity=-0.006 Sum_probs=66.8
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVA 498 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 498 (554)
+.+.+++|...|+...+. -|.+..++..+..+|...+++..+.+ ..+.+++|+..+
T Consensus 9 r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~~ 64 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITKF 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHHH
Confidence 344455556566555552 23344555555555544433333222 234568899999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHccCC-----------hhHHHHHHHHHhhcCCc
Q 045069 499 HQLFENDPRKGAYKVMLSNTYAEDGR-----------WDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 499 ~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~ 541 (554)
+++++.+|+++..+..++.+|...|+ +++|.+.|+++++..+.
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 99999999999999999999987664 68899999998876643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=4.1e-05 Score=53.74 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP---------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+-.++..+.+.|++++|+..+++.. ......++..+..++.+.|++++|+..++++++.+|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3455666666666666666665542 0123457788999999999999999999999999999998888875
Q ss_pred H
Q 045069 517 N 517 (554)
Q Consensus 517 ~ 517 (554)
.
T Consensus 88 ~ 88 (95)
T d1tjca_ 88 Y 88 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=2.5e-05 Score=58.64 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+..++..+...|++++|+..|+++++.+|+++.++..++.+|.+.|++++|++.++++++..+..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~ 71 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence 455678889999999999999999999999999999999999999999999999999998755443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.71 E-value=7.7e-05 Score=58.19 Aligned_cols=63 Identities=13% Similarity=-0.089 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------C----CchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDP-------R----KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
..|..+..+|...|++++|...++++++..| + ....+..++.+|...|++++|++.|+++++.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777788888888888887776532 1 1235677899999999999999999998764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=7.3e-05 Score=52.40 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK-------GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.....++..+.+.|+++.|+..++++++..|.+ ..++..|+.++.+.|++++|++.++++++..+..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 345578888999999999999999999884433 4678899999999999999999999999876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.59 E-value=4e-05 Score=65.47 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=66.7
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChH
Q 045069 383 GLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 460 (554)
.+.|++++|+..+++.++ ..|+ ...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 455777777777777776 3443 446667777777777777777777776652 333 344444444444444444
Q ss_pred HHHHHHHhCC--C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 461 EAYSFIWSLP--K-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 461 ~A~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
++..-..... . +++...+......+...|+.++|.+.++++.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 4332222211 1 1122222333444555666666666666666666655543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.59 E-value=0.00012 Score=62.38 Aligned_cols=123 Identities=12% Similarity=0.035 Sum_probs=89.3
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
..+.|++++|+..+++..+ .-|.+...+..++..|+..|++++|.+.++.... +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4578999999999999988 4666789999999999999999999999999752 44455555555555444444433
Q ss_pred HHHHHHHHhc-CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 495 EIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 495 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.......... .|+....+...+..+...|+.++|.+.++++.+..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 3322221111 3444555666678889999999999999999876543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=2.3e-05 Score=74.63 Aligned_cols=109 Identities=9% Similarity=-0.030 Sum_probs=46.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
..+..+...+.+.|+.+.|...+++.... .| ..++..+...+...|++++|...|++..+. .|.+...|+.++..
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAIL 195 (497)
T ss_dssp ----------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 34444555555555555555555544331 11 124555555566666666666666666552 33345566666666
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 453 LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
+...|+..+|+..|.+.. .+|.+.++..|...+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 666666666666665532 3455555555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.00081 Score=53.28 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=58.4
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHH----HhCCCCChhHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTE----EYGIQAKTEHYI 447 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 447 (554)
..+..+...+...|++++|+..++++++ ..| +...|..++.++.+.|+..+|++.|+++.+ .+|+.|+..+-.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 4567778888899999999999999988 445 556889999999999999999999888744 258888876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.30 E-value=0.00061 Score=52.83 Aligned_cols=62 Identities=10% Similarity=-0.185 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--------KPV-----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
.|+.+..+|...|++++|++.+++.. ..+ ....+..+..+|...|++++|+..|+++++..|
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555555666666666655554432 011 122456677888888999999999988888743
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.10 E-value=0.022 Score=40.14 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=101.7
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
+...|..++..+++.+.... .+..-|+.++--....-+-+-..++++.+-+-+.+.|-.. ...++..+...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 45568888888888888763 3455677777666667777777788877755433333211 2233344443332
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+...+...+.....+|+-+.-..+++.+.+....+|.+...++.+|.+.|...++.+++.++-+.|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33445556677789999999999999988888888999999999999999999999999999998875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.18 Score=46.11 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 386 GFTYQAFEFFRDIIEKGLNPDESTF----SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 386 ~~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
.+.+.|..++......... +.... ..+.......+..+.+...+...... ..+.......+....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 5677888888877664322 22221 22233334556677787777766552 3344444455555667788999
Q ss_pred HHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 462 AYSFIWSLPKPV--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 462 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+...++.+...+ ...-..-+..++...|+.+.|...|..+... + ++|..|+
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~---~fYG~LA 356 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-R---GFYPMVA 356 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-C---SHHHHHH
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-C---ChHHHHH
Confidence 998888886432 2333355677788889999999888888642 2 3666663
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.51 E-value=0.015 Score=43.02 Aligned_cols=81 Identities=7% Similarity=-0.100 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHH
Q 045069 458 NLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVM 529 (554)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 529 (554)
+.++|.+++++.....++.....|...|.. ..|.++|.+.|+++.+. .++.....|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHH
Confidence 344444444443333333343444433332 34667777777777665 345566667767665 45788888
Q ss_pred HHHHHHhhcCC
Q 045069 530 KLRDDIVDNGL 540 (554)
Q Consensus 530 ~~~~~~~~~~~ 540 (554)
+++++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88888777664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.26 E-value=0.009 Score=42.75 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 491 SDLAEIVAHQLFENDPRKG-AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.++++.+++++.+.+|.+. ..++.|+-+|.+.|++++|+++++++++..
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3445555555554444332 344444445555555555555555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.73 E-value=0.08 Score=38.86 Aligned_cols=111 Identities=9% Similarity=-0.093 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEEA 462 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 462 (554)
++++|+++|++..+.|.. .....+. .....+.++|.+++++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 577888888888887632 2222222 34456788888888888763 3 34555566666654 4578889
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 045069 463 YSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 506 (554)
.++|++.....++.....|...|.. ..|.++|...++++.+...
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999887666667777777777665 4588899999998887643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.66 E-value=0.44 Score=33.48 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=43.1
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
..+...+..+..+|+-++-.++++.+.+. -+|++.....+..+|-+.|+..++.+++.+.-++ |+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 34455566667777777777777776653 4666666777777777777777777777777664 54
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.03 E-value=0.57 Score=33.10 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=40.4
Q ss_pred ChHHHHHHHHhCCC-CC-C-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 458 NLEEAYSFIWSLPK-PV-D-PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 458 ~~~~A~~~~~~~~~-~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+.++++.+++++.. .| + ...+..|..+|.+.|++++|...++++++.+|++..+....
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 34455555555431 22 2 24666778888899999999999999999999887765544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.52 E-value=1.1 Score=29.68 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..+.+ ..++...|..+++-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 44466667777777789999999999999999999999999999999886 43446677776543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.09 E-value=6.2 Score=35.31 Aligned_cols=352 Identities=10% Similarity=-0.043 Sum_probs=198.1
Q ss_pred HHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCChhhHHHHHHHcccCCcc
Q 045069 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG-KTPDEYTLVGLISGLWEPSLL 221 (554)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~ 221 (554)
...+..+.+.++++..+..+...+ .+...-.....+....|+.+.|...+..+-..| ..|+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~----------------- 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN----------------- 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT-----------------
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-----------------
Confidence 344566778888888777665432 244444566777888899988888877764443 2222
Q ss_pred chhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 045069 222 SVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQG 301 (554)
Q Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 301 (554)
.+..++....+.|. .+...+-.-+......|+...|..+...+...........+...... ..+...... .
T Consensus 138 -~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~---~- 208 (450)
T d1qsaa1 138 -ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFART---T- 208 (450)
T ss_dssp -HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH---S-
T ss_pred -HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhc---C-
Confidence 22233333344332 23333334555666778888888888877665555555555544332 222222211 1
Q ss_pred CCCCHHHHHHHHHHHhc--cCCcchhHHHHHHHHHhcCCchHHH---HHHHHHHHHccCChHHHHHHHhccC--CCCcch
Q 045069 302 KKADPVLIASVLAAAAK--SANVWPGAVIHGYVIQHGFELSVMV---SSALVDMYSKCGYLGLGIQVFETMS--ERNIIT 374 (554)
Q Consensus 302 ~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 374 (554)
.++......+..++.+ ..+.+.+...+.............. ...+.......+..+.+...+.... ..+...
T Consensus 209 -~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (450)
T d1qsaa1 209 -GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL 287 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH
T ss_pred -CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHH
Confidence 2233333333333332 2466677777777655432222111 1222233334566677776665443 233333
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG 454 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (554)
..-.+......+++..+...+..|... ......-.--+.+++...|+.+.|...|..... .++ -|..|...
T Consensus 288 ~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~-- 358 (450)
T d1qsaa1 288 IERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ-- 358 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--
T ss_pred HHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--
Confidence 334455556678899998888876432 122233445677888899999999999998854 233 34433321
Q ss_pred hcCChHHHHHHH-HhCCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHH
Q 045069 455 LAGNLEEAYSFI-WSLPKPVDPA----VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 455 ~~g~~~~A~~~~-~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
+.|..-. +- ......+... .-..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+
T Consensus 359 ~Lg~~~~---~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 359 RIGEEYE---LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp HTTCCCC---CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCCCC---CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHH
Confidence 2221100 00 0001111110 11123455778899999999999887653 4556677888899999999999
Q ss_pred HHHHHHh
Q 045069 530 KLRDDIV 536 (554)
Q Consensus 530 ~~~~~~~ 536 (554)
....+..
T Consensus 434 ~a~~~~~ 440 (450)
T d1qsaa1 434 QATIAGK 440 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8877664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.60 E-value=4.8 Score=26.56 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 348 (554)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-.+.+. .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 444555666666666777888888888888888888888888877776543 22344555444
|