Citrus Sinensis ID: 045105
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 601 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIT7 | 697 | Pentatricopeptide repeat- | yes | no | 0.928 | 0.800 | 0.329 | 1e-108 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.978 | 0.748 | 0.349 | 1e-106 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.936 | 0.662 | 0.351 | 1e-105 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.880 | 0.653 | 0.338 | 1e-103 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.905 | 0.715 | 0.330 | 1e-102 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.890 | 0.614 | 0.341 | 1e-100 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.928 | 0.524 | 0.321 | 2e-98 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.845 | 0.731 | 0.336 | 2e-98 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.965 | 0.780 | 0.327 | 4e-97 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.873 | 0.589 | 0.337 | 1e-96 |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/640 (32%), Positives = 339/640 (52%), Gaps = 82/640 (12%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KCGSL+D ++VF MP+R+ +WNSVVT G + EA M D T
Sbjct: 65 YSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT----- 119
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W++++ GF Q+ EEA+ M EG N + +SVL AC+ L ++ G + H I
Sbjct: 120 WNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 179
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
++ F+S+ ++ + LVD+Y +CG++ A ++F + +N VS N++I + +NG EA +
Sbjct: 180 KSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD 239
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
+F M + +EP T SV+ AC
Sbjct: 240 VFQMM------------------------------------LESRVEPDEVTLASVISAC 263
Query: 242 ADMNSLRKGKEIHALAIAL-GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
A +++++ G+E+H + L++D + A V+MY + + A+ FD + I N++
Sbjct: 264 ASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP-IRNVIA 322
Query: 301 K------------------MKEDGFEPNVYTWN--------------AMQLFSEMLSLDL 328
+ M E NV +WN A+ LF + +
Sbjct: 323 ETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382
Query: 329 TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY------DSDVHIGTALVDMYAKCGS 382
P Y+ IL AC+ LA + G Q H + ++ G+ + D+ +G +L+DMY KCG
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
++ L ++++ D VS NAM+ +A +G+G E + FR +L SG +PDHI+ + LSA
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 502
Query: 443 CVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV 501
C HAG ++ G +F M + V P HYTCMVDLL RAG L EA I+++PM PDSV
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 562
Query: 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561
+WG+LL C H N+ G+ A++L+E+EP+N+G YV+L+N++A G+W D+ R+ M+
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMR 622
Query: 562 DRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
+ K PGCSWI+ + H F D+SH R ++I++++D
Sbjct: 623 KEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLD 662
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/632 (34%), Positives = 338/632 (53%), Gaps = 44/632 (6%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y K G A+K+F MP R SWN+V++A + G + E +++ D+ V
Sbjct: 58 VYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDS-----V 112
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+ +I G+ G +AI ++ M EG+EP TL++VL + A + + GK+ H +I
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G N V N L+++Y +CGD + A +F + +++ S N +I + + G + A
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
F+QM +R I++WNSMISG+ A +F +L + P FT SVL A
Sbjct: 233 AQFEQM----AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSA 288
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR---------------------- 278
CA++ L GK+IH+ + G V AL+ MY R
Sbjct: 289 CANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348
Query: 279 -YQDLVAAQMAFDEIENIENLLGKMKED----------GFEPNVYTWNAMQLFSEMLSLD 327
+ L+ + ++ +N+ +K+ G+E + A+ LF M+
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408
Query: 328 LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR 387
P+ YT+ +LS SSLA++ GKQ+H A++ G V + AL+ MYAK G++ A
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSAS 468
Query: 388 LAYKRISTP-DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446
A+ I D VS +M+ A A HGH +E + F +L G RPDHI+++ SAC HA
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528
Query: 447 GSIKTGSEFFDLMAYYD-VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA 505
G + G ++FD+M D + P+L HY CMVDL RAG L EA EFI+K+P+ PD V WG+
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588
Query: 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565
LL C H N++ G++AA+RL+ LEP N+G Y LANL++ G+W + A+ R+ MKD R+
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648
Query: 566 HKSPGCSWIEDRDEIHKFRASDRSHDRSEEIY 597
K G SWIE + ++H F D +H EIY
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/614 (35%), Positives = 328/614 (53%), Gaps = 51/614 (8%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY +C SL DA+KVF M D +V
Sbjct: 171 MYSRCRSLSDARKVFDEMSVWD------------------------------------VV 194
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
SW+++I + + G + A+ M RM E G P+ TL +VLP CA L SLGK+ H +
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+ + N FV N LVD+Y +CG M A +FS S+K+ VS N ++ GY + G +A
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 314
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
LF++M+ ++ +++W++ ISGY L EA + R +L GI+P T SVL
Sbjct: 315 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQML-SSGIKPNEVTLISVLS 373
Query: 240 ACADMNSLRKGKEIHALAIAL-------GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292
CA + +L GKEIH AI G + V L++MY + + + A+ FD +
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433
Query: 293 ENIEN--LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLT--PDIYTVGIILSACSSLATM 348
E + + G+ + A++L SEM D P+ +T+ L AC+SLA +
Sbjct: 434 SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493
Query: 349 ERGKQVHAYAIRCGYDS-DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTA 407
GKQ+HAYA+R ++ + + L+DMYAKCGS+ ARL + + + V+ +++T
Sbjct: 494 RIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTG 553
Query: 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKP 466
Y MHG+G+E + F + GF+ D ++ L L AC H+G I G E+F+ M + V P
Sbjct: 554 YGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSP 613
Query: 467 SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRL 526
+HY C+VDLL RAG L A I+++PM P V+W A L C HG +E G+ AA+++
Sbjct: 614 GPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKI 673
Query: 527 IELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586
EL N+ G+Y +L+NL+A AGRW D+ R R M+ + + K PGCSW+E F
Sbjct: 674 TELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVG 733
Query: 587 DRSHDRSEEIYTII 600
D++H ++EIY ++
Sbjct: 734 DKTHPHAKEIYQVL 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/602 (33%), Positives = 325/602 (53%), Gaps = 73/602 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC +++A+KVF MPERD LV
Sbjct: 179 MYAKCRQVNEARKVFDRMPERD------------------------------------LV 202
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+ ++ G++QNG A+ M+ M E L+P+ T+ SVLPA + L+ +S+GKE HGY
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R+GF S + LVD+Y +CG + +A R
Sbjct: 263 MRSGFDSLVNISTALVDMYAKCGSLETA-------------------------------R 291
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+LFD M ++R ++SWNSMI YV N EA +F+ +L +G++PT + L A
Sbjct: 292 QLFDGM----LERNVVSWNSMIDAYVQNENPKEAMLIFQKML-DEGVKPTDVSVMGALHA 346
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CAD+ L +G+ IH L++ LGL + V +L+ MYC+ +++ A F ++++ +
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360
GF N +A+ FS+M S + PD +T +++A + L+ K +H +R
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466
Query: 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH 420
D +V + TALVDMYAKCG++ ARL + +S + + NAM+ Y HG GK +
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526
Query: 421 FRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YYDVKPSLKHYTCMVDLLS 479
F + +P+ ++FLS +SAC H+G ++ G + F +M Y ++ S+ HY MVDLL
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLG 586
Query: 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM 539
RAG L EA++FI ++P+ P ++GA+LG C H N+ F + AA+RL EL P++ G +V+
Sbjct: 587 RAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVL 646
Query: 540 LANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTI 599
LAN++ A W + + R M + + K+PGCS +E ++E+H F + +H S++IY
Sbjct: 647 LANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAF 706
Query: 600 ID 601
++
Sbjct: 707 LE 708
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/581 (33%), Positives = 315/581 (54%), Gaps = 37/581 (6%)
Query: 57 PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF 116
P + S+S++I T+ ++IG+ RM + GL P++ L ++ CA L +GK+
Sbjct: 79 PTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQI 138
Query: 117 HGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNV 176
H +G + FV + +Y RCG M A K+F + S K+ V+C+ ++ Y G +
Sbjct: 139 HCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL 198
Query: 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236
E + +ME G++ I+SWN ++SG+ + + EA MF+ + G P T S
Sbjct: 199 EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI-HHLGFCPDQVTVSS 257
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
VL + D L G+ IH I GL D V A+++MY + + F++ E +E
Sbjct: 258 VLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMME 317
Query: 297 ---------------------NLLGKMKEDGFEPNVYTWN--------------AMQLFS 321
+ KE E NV +W A++LF
Sbjct: 318 AGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFR 377
Query: 322 EMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG 381
EM + P+ T+ +L AC ++A + G+ H +A+R +VH+G+AL+DMYAKCG
Sbjct: 378 EMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCG 437
Query: 382 SLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALS 441
+ +++ + + T +LV N+++ ++MHG KE ++ F ++ + +PD ISF S LS
Sbjct: 438 RINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497
Query: 442 ACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS 500
AC G G ++F +M+ Y +KP L+HY+CMV+LL RAG+L EAY+ IK++P PDS
Sbjct: 498 ACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDS 557
Query: 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560
+WGALL C N++ +IAA++L LEP N G YV+L+N++A G W+++ R KM
Sbjct: 558 CVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKM 617
Query: 561 KDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
+ + K+PGCSWI+ ++ ++ A D+SH + ++I +D
Sbjct: 618 ESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMD 658
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/579 (34%), Positives = 318/579 (54%), Gaps = 44/579 (7%)
Query: 20 ERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAI 79
ER+ V NS+V N V A + + M+ D ++SW+++I G+ NG E+ +
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERD-----VISWNSIINGYVSNGLAEKGL 281
Query: 80 GMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVY 139
+ +M G+E + T+ SV CA + +SLG+ H + F N L+D+Y
Sbjct: 282 SVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMY 341
Query: 140 RRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWN 199
+C G++ A+ +F +M R ++S+
Sbjct: 342 SKC-------------------------------GDLDSAKAVFREMS----DRSVVSYT 366
Query: 200 SMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIA 259
SMI+GY L EA +F ++ +GI P +T +VL CA L +GK +H
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEM-EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE 425
Query: 260 LGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQL 319
L D FV AL++MY + + A++ F E+ + + G+ N Y A+ L
Sbjct: 426 NDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSL 485
Query: 320 FSEMLSLD-LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYA 378
F+ +L +PD TV +L AC+SL+ ++G+++H Y +R GY SD H+ +LVDMYA
Sbjct: 486 FNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYA 545
Query: 379 KCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLS 438
KCG+L A + + I++ DLVS M+ Y MHG GKE IA F ++ +G D ISF+S
Sbjct: 546 KCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVS 605
Query: 439 ALSACVHAGSIKTGSEFFDLMAYY-DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497
L AC H+G + G FF++M + ++P+++HY C+VD+L+R G+L +AY FI+ +P+
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665
Query: 498 PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557
PD+ +WGALL GC H +++ + A+++ ELEP NTG YV++AN++A A +W + R R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725
Query: 558 QKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
+++ R + K+PGCSWIE + ++ F A D S+ +E I
Sbjct: 726 KRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENI 764
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 202/629 (32%), Positives = 328/629 (52%), Gaps = 71/629 (11%)
Query: 4 KCGSLDDAKKVFKMMP----ERDCVSWNSVVTACAANGLVLEALE--------------- 44
+CG + A ++FK M E D + S+V AC+A+G + +
Sbjct: 366 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK 425
Query: 45 -----------CLERMSSLD----NETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG 89
C + ++LD E N+V W+ ++ + + + +MQ E
Sbjct: 426 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEE 485
Query: 90 LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSAL 149
+ PN T S+L C RL L LG++ H I + F N +V + L+D+Y + G + +A
Sbjct: 486 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAW 545
Query: 150 KIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS 209
I +F+ K+ ++SW +MI+GY +
Sbjct: 546 DILIRFAGKD-----------------------------------VVSWTTMIAGYTQYN 570
Query: 210 LYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVG 269
D+A + FR +L R GI + + ACA + +L++G++IHA A G SD
Sbjct: 571 FDDKALTTFRQMLDR-GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 629
Query: 270 GALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLT 329
ALV +Y R + + +AF++ E +N+ GF+ + A+++F M +
Sbjct: 630 NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID 689
Query: 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLA 389
+ +T G + A S A M++GKQVHA + GYDS+ + AL+ MYAKCGS+ A
Sbjct: 690 NNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 749
Query: 390 YKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449
+ +ST + VS NA++ AY+ HG G E + F +++ S RP+H++ + LSAC H G +
Sbjct: 750 FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 809
Query: 450 KTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLG 508
G +F+ M + Y + P +HY C+VD+L+RAG L A EFI+++P+ PD+++W LL
Sbjct: 810 DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869
Query: 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKS 568
CV H N+E G+ AA L+ELEP ++ YV+L+NL+A + +W TRQKMK++ + K
Sbjct: 870 ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 929
Query: 569 PGCSWIEDRDEIHKFRASDRSHDRSEEIY 597
PG SWIE ++ IH F D++H ++EI+
Sbjct: 930 PGQSWIEVKNSIHSFYVGDQNHPLADEIH 958
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/546 (33%), Positives = 301/546 (55%), Gaps = 38/546 (6%)
Query: 53 DNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSL 112
D P + W+A+I G+++N + ++A+ M MQ + P++ T +L AC+ L L +
Sbjct: 78 DLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQM 137
Query: 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTIIVGY 170
G+ H + R GF ++ FV NGL+ +Y +C + SA +F + + VS I+ Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197
Query: 171 CENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT 230
+NG EA E+F QM + V+ P
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVK------------------------------------PD 221
Query: 231 SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290
SVL A + L++G+ IHA + +GL+ + + +L MY + + A++ FD
Sbjct: 222 WVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFD 281
Query: 291 EIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMER 350
++++ +L G+ N Y A+ +F EM++ D+ PD ++ +SAC+ + ++E+
Sbjct: 282 KMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341
Query: 351 GKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAM 410
+ ++ Y R Y DV I +AL+DM+AKCGS++ ARL + R D+V +AM+ Y +
Sbjct: 342 ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGL 401
Query: 411 HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKH 470
HG +E I+ +R + G P+ ++FL L AC H+G ++ G FF+ MA + + P +H
Sbjct: 402 HGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQH 461
Query: 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530
Y C++DLL RAG L +AYE IK +P+ P +WGALL C H ++E G+ AA +L ++
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 531 PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSH 590
P+NTG+YV L+NL+A A W +A R +MK++ ++K GCSW+E R + FR D+SH
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581
Query: 591 DRSEEI 596
R EEI
Sbjct: 582 PRYEEI 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 194/593 (32%), Positives = 327/593 (55%), Gaps = 13/593 (2%)
Query: 11 AKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFT 70
A++VF +P+ + SWN+++ A + GL+ E E++ D V+W+ +I G++
Sbjct: 60 ARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDG-----VTWNVLIEGYS 114
Query: 71 QNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP 129
+G A+ M + R TL ++L + +SLGK+ HG + + GF S
Sbjct: 115 LSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYL 174
Query: 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189
V + L+ +Y G + A K+F +N V N+++ G G + +A +LF ME
Sbjct: 175 LVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-- 232
Query: 190 GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK 249
+ +SW +MI G N L EA FR++ ++ G++ + FGSVL AC + ++ +
Sbjct: 233 ---KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ-GLKMDQYPFGSVLPACGGLGAINE 288
Query: 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP 309
GK+IHA I Q +VG AL++MYC+ + L A+ FD ++ + G+
Sbjct: 289 GKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQ 348
Query: 310 NVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHI 369
A+++F +M + PD YT+G +SAC++++++E G Q H AI G V +
Sbjct: 349 TGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTV 408
Query: 370 GTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF 429
+LV +Y KCG + + + ++ D VS AM++AYA G E I F +++ G
Sbjct: 409 SNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGL 468
Query: 430 RPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAY 488
+PD ++ +SAC AG ++ G +F LM + Y + PS+ HY+CM+DL SR+G L EA
Sbjct: 469 KPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAM 528
Query: 489 EFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548
FI +P PD++ W LL C + GNLE G+ AA+ LIEL+P++ Y +L++++A G
Sbjct: 529 RFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKG 588
Query: 549 RWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
+W +A+ R+ M+++ + K PG SWI+ + ++H F A D S ++IY ++
Sbjct: 589 KWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLE 641
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 206/610 (33%), Positives = 312/610 (51%), Gaps = 85/610 (13%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGK G L +K + RD V+WN+V+++ N +LEALE L M
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV---------- 294
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
EG+EP+ T+SSVLPAC+ L+ L GKE H Y
Sbjct: 295 --------------------------LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328
Query: 121 TRNGFM-SNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+NG + N FV + LVD+Y C +LS ++F + N +I GY +N + EA
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
LF ME G+ S T V+
Sbjct: 389 LLLFIGMEESA-----------------------------------GLLANSTTMAGVVP 413
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL 299
AC + + + IH + GL D FV L++MY R + A F ++E+ + +
Sbjct: 414 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 473
Query: 300 GKMKEDGFEPNVYTWNAMQLFSEMLSLD-----------LTPDIYTVGIILSACSSLATM 348
G+ + + +A+ L +M +L+ L P+ T+ IL +C++L+ +
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533
Query: 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAY 408
+GK++HAYAI+ +DV +G+ALVDMYAKCG L+ +R + +I ++++ N ++ AY
Sbjct: 534 AKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAY 593
Query: 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPS 467
MHG+G+E I R ++ G +P+ ++F+S +AC H+G + G F +M Y V+PS
Sbjct: 594 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 653
Query: 468 LKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV-MWGALLGGCVSHGNLEFGQIAADRL 526
HY C+VDLL RAG + EAY+ + +P + W +LLG H NLE G+IAA L
Sbjct: 654 SDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL 713
Query: 527 IELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586
I+LEPN +YV+LAN+++ AG W R+ MK++ + K PGCSWIE DE+HKF A
Sbjct: 714 IQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAG 773
Query: 587 DRSHDRSEEI 596
D SH +SE++
Sbjct: 774 DSSHPQSEKL 783
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 601 | ||||||
| 224118338 | 852 | predicted protein [Populus trichocarpa] | 1.0 | 0.705 | 0.698 | 0.0 | |
| 357436395 | 827 | Pentatricopeptide repeat-containing prot | 0.996 | 0.724 | 0.622 | 0.0 | |
| 359490816 | 702 | PREDICTED: pentatricopeptide repeat-cont | 0.906 | 0.776 | 0.580 | 0.0 | |
| 356551361 | 688 | PREDICTED: pentatricopeptide repeat-cont | 0.863 | 0.754 | 0.561 | 1e-174 | |
| 255549182 | 758 | pentatricopeptide repeat-containing prot | 0.643 | 0.510 | 0.532 | 1e-123 | |
| 148909481 | 795 | unknown [Picea sitchensis] | 0.880 | 0.665 | 0.377 | 1e-120 | |
| 356551964 | 551 | PREDICTED: pentatricopeptide repeat-cont | 0.638 | 0.696 | 0.538 | 1e-120 | |
| 357516843 | 748 | Pentatricopeptide repeat-containing prot | 0.973 | 0.782 | 0.357 | 1e-113 | |
| 225435852 | 972 | PREDICTED: pentatricopeptide repeat-cont | 0.955 | 0.590 | 0.374 | 1e-113 | |
| 147767942 | 929 | hypothetical protein VITISV_016435 [Viti | 0.955 | 0.617 | 0.374 | 1e-113 |
| >gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa] gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/636 (69%), Positives = 516/636 (81%), Gaps = 35/636 (5%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGKCGSLDDAKKV MPERD V+WNSV+TACAANG+V EALE LE+M SLD PN+V
Sbjct: 204 MYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVV 263
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SWSAVIGGF QNGYDEEAI MLFRMQ EGL PNA+TL+ VLPACARLQ+L LGK+ HGYI
Sbjct: 264 SWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYI 323
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
TR+ F+SNP VVN LVDVYRRCGDM A KIF KFS+KN +SCNT+IVGYCE+G+V++A+
Sbjct: 324 TRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAK 383
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
ELFD M+ LG++RG+ISWNS+ISGYV N ++DEAFSMF+++LM +GIEP SFT GSVL A
Sbjct: 384 ELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTA 443
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDE--------- 291
CAD SLR+GKEIHA AI GLQSDTFVGGALVEMY + QDL AAQ+AFDE
Sbjct: 444 CADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTW 503
Query: 292 ------------IENIENLLGKMKEDGFEPNVYTWNA--------------MQLFSEMLS 325
IE I+ LL KMK DG+ PN+YTWN+ MQLFSEM
Sbjct: 504 NALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQI 563
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKH 385
L PDIYTVGIIL ACS LAT+ERGKQ HA++I+CGYD+DVHIG ALVDMYAKCGSLK+
Sbjct: 564 SKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKY 623
Query: 386 ARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445
A+LAY RIS P+LVS NAMLTA AMHGHG+EGI+ F+ +LA GF PDH++FLS LS+CVH
Sbjct: 624 AQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVH 683
Query: 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA 505
GS++TG EFFDLM YY+VKP+LKHYT MVDLLSR+G+L EAYE IKK+P+ DSV+WGA
Sbjct: 684 VGSVETGCEFFDLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGA 743
Query: 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565
LLGGCV+HGN+E G+IAA+RLIELEPNN+GNYV+LANL AYA RW+DLAR R MKDR M
Sbjct: 744 LLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGM 803
Query: 566 HKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
HKSPGCSWIED++EIH F A DRSH R+EEIY +D
Sbjct: 804 HKSPGCSWIEDKNEIHSFLACDRSHKRAEEIYATLD 839
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/636 (62%), Positives = 474/636 (74%), Gaps = 37/636 (5%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGKCGSLD+AKKV + M ++DCVSWNS++TAC ANG+V EAL+ LE M L PN+V
Sbjct: 178 MYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENML-LSELEPNVV 236
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+WSAVIGGF+ N YD E++ + RM G+ P+ARTL+SVLPAC+R++ L +GKE HGYI
Sbjct: 237 TWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYI 296
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R+ SN FV N LV +YRRCGDM SA KIFSKF+ K S NT+IVGY ENGNV +A+
Sbjct: 297 VRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAK 356
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
ELF QME GV+R ISWN MISG+VDN ++D+A +FRDLLM +GIEP SFT GS+L
Sbjct: 357 ELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLM-EGIEPDSFTLGSILTG 415
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIE------- 293
ADM +R+GKEIH++AI GLQS++FVGGALVEMYC+ D++AAQMAFDEI
Sbjct: 416 FADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTW 475
Query: 294 --------------NIENLLGKMKEDGFEPNVYTWN--------------AMQLFSEMLS 325
I L+ +MK DGFEPNVYTWN AMQLF+EM
Sbjct: 476 NALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQV 535
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKH 385
L PDIYTVGIIL+ACS LAT+ RGKQVHAY+IR GYDSD HIG LVDMYAKCGS+KH
Sbjct: 536 SSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKH 595
Query: 386 ARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445
Y +IS P+LV NAMLTAYAMHGHG+EGI FRR+L S RPDH++FLS LS+CVH
Sbjct: 596 CYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVH 655
Query: 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA 505
AGSIK G E F LM Y++ P+LKHYTCMVDLLSRAG+L EAY+ IK +PM DSV W A
Sbjct: 656 AGSIKIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSA 715
Query: 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565
LLGGC H + G+IAA++LIELEP+NTGNYV+LANL+A AGRW DLA+TR+ M D+ M
Sbjct: 716 LLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGM 775
Query: 566 HKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
KSPGCSWIEDRD +H F ASD+SH R EEIY ++D
Sbjct: 776 QKSPGCSWIEDRDGVHIFLASDKSHQRVEEIYFMLD 811
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/636 (58%), Positives = 441/636 (69%), Gaps = 91/636 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYG+ G LDDA VF MP+R NL
Sbjct: 103 MYGRFGCLDDANLVFVKMPQR------------------------------------NLY 126
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+A++ +GY EEA+ + ++Q + + VL C L+ L LG++ HG
Sbjct: 127 SWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGV- 185
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
V +RC DM SALKIFS FS+KN VS NT+IVGYCENGNV +A+
Sbjct: 186 -----------------VIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAK 228
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
ELFDQME +G + ISWNSMISGY DN L+DEA SMFRDLLM +GIE SFT GSVL A
Sbjct: 229 ELFDQMELVG--KDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAA 286
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD---------- 290
CADM SLR+GKE+HA A+ GL +TFVGGALVEMY + +DL AAQ+AFD
Sbjct: 287 CADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATW 346
Query: 291 -----------EIENIENLLGKMKEDGFEPNVYTWN--------------AMQLFSEMLS 325
++ENI+NL+ KMK DGFEPNVYTWN A++LF+EM +
Sbjct: 347 NVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQT 406
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKH 385
L PDIYTVGIIL AC+ LAT+ RGKQVHA++IR GY+ DVHIG ALVDMYAKCGS+KH
Sbjct: 407 SSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKH 466
Query: 386 ARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445
A Y RIS P+LVSQNAMLTAYAMHGHG EGIA FR +L +GFRPDH++FLS LS+CVH
Sbjct: 467 AMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVH 526
Query: 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA 505
AG+++TG EFFDLM YY+V PSLKHYTC+VDLLSRAG L EAYE +KKIP PDSVMWGA
Sbjct: 527 AGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGA 586
Query: 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565
LLGGCV GN+E G+IAA+ LIELEPNNTGNYV+LANL+AYAGRW DL RTRQ +KDR M
Sbjct: 587 LLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGM 646
Query: 566 HKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
HKSPGCSWIEDR++IH F + D+SH+++E+IYT +D
Sbjct: 647 HKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLD 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02330-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 323/575 (56%), Positives = 393/575 (68%), Gaps = 56/575 (9%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR--TLSSVLPACARLQKLSLGKE 115
NL SW+A++ + + G+ EEA + ++ EG+ VL C L + LG++
Sbjct: 113 NLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQ 172
Query: 116 FHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGN 175
HG ++ GDM SA ++FS+FS K+ S N +I GY ENGN
Sbjct: 173 MHGMALKHD------------------GDMKSAFEMFSRFSRKSAASYNAMIAGYWENGN 214
Query: 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235
+ +A+ELFD+ME GVQ+ ISWNSMISGYVD SL+DEA+S+FRDLL ++GIEP SFT G
Sbjct: 215 LFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLL-KEGIEPDSFTLG 273
Query: 236 SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD----- 290
SVL CADM S+R+GKE H+LAI GLQS++ VGGALVEMY + QD+VAAQMAFD
Sbjct: 274 SVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSER 333
Query: 291 ----------------EIENIENLLGKMKEDGFEPNVYTWN--------------AMQLF 320
+ E I L KM+ DGFEPNVYTWN AMQLF
Sbjct: 334 DLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLF 393
Query: 321 SEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKC 380
+EM +L PDIYTVGIIL+ACS LAT++RGKQVHAY+IR G+DSDVHIG ALVDMYAKC
Sbjct: 394 TEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKC 453
Query: 381 GSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL 440
G +KH Y IS P+LVS NAMLTAYAMHGHG+EGIA FRR+LAS RPDH++FL+ L
Sbjct: 454 GDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVL 513
Query: 441 SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS 500
S+CVHAGS++ G E LM Y+V PSLKHYTCMVDLLSRAG+L EAYE IK +P D+
Sbjct: 514 SSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADA 573
Query: 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560
V W ALLGGC H ++ G+IAA++LIELEPNN GNYVMLANL+A AG+W L +TRQ M
Sbjct: 574 VTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLM 633
Query: 561 KDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEE 595
KD M K PGCSWIEDRD IH F A D H + +
Sbjct: 634 KDMGMQKRPGCSWIEDRDGIHVFVAKDIYHTSTSK 668
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549182|ref|XP_002515645.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545188|gb|EEF46697.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/443 (53%), Positives = 299/443 (67%), Gaps = 56/443 (12%)
Query: 45 CLERMSSLDNETP--NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102
CLE L + P NL SW A++ + +G +EA + + E +E V
Sbjct: 114 CLECAHLLFDSVPLRNLHSWLAILNVYFDHGLFDEAFSLFQELLFEDIELEFFAFPLVFK 173
Query: 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVS 162
C+ L + LG++ H V +RCGDM +A+KIFS+FS++NEVS
Sbjct: 174 ICSGLGMVELGRQLHAM------------------VMKRCGDMDNAVKIFSRFSLRNEVS 215
Query: 163 CNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222
NT+IVGYC G+V++A+E FDQME GV+R ISWNSMISGYVDN ++DEA +MFR+LL
Sbjct: 216 YNTMIVGYCAIGDVSKAKEFFDQMEVSGVKRERISWNSMISGYVDNFMFDEALNMFRNLL 275
Query: 223 MRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDL 282
++GIEP SFT GSVL ACAD SLR+GKEIH+ AI LQS+TFVGGAL+EMY + QD
Sbjct: 276 -KEGIEPDSFTLGSVLTACADTASLRQGKEIHSYAIVKSLQSNTFVGGALIEMYSKCQDP 334
Query: 283 VAAQMAFDEI---------------------ENIENLLGKMKEDGFEPNVYTWN------ 315
+AAQ+ F+E+ E I NLL KM+EDGFEPN+YTWN
Sbjct: 335 MAAQLVFNEVIERDAPTWNVLISCYARCNQNEEIRNLLQKMQEDGFEPNIYTWNGILAGY 394
Query: 316 --------AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDV 367
AMQLFSEM + D+ PDI+TVGIIL ACS LAT+ERGKQVHA++IRC YDSDV
Sbjct: 395 VENGHLDLAMQLFSEMHTGDVRPDIFTVGIILPACSKLATLERGKQVHAHSIRCYYDSDV 454
Query: 368 HIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS 427
HIG LVDMYAKCGSL++A+LAY RIS +LV N MLTAYAMHG+G+EGIA FR I A+
Sbjct: 455 HIGAGLVDMYAKCGSLQYAQLAYSRISNHNLVCHNVMLTAYAMHGYGEEGIALFRTIRAT 514
Query: 428 GFRPDHISFLSALSACVHAGSIK 450
GF+PD+++FLS L++CVHAG ++
Sbjct: 515 GFQPDNVTFLSVLASCVHAGLVE 537
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/602 (37%), Positives = 345/602 (57%), Gaps = 73/602 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCGSL++A++VF MP+RD +V
Sbjct: 164 MYTKCGSLENARQVFDRMPKRD------------------------------------VV 187
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+A+I G++QNG EA+ + MQ G++PN+ TL SV+P CA L L GK+ H Y
Sbjct: 188 SWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYA 247
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R+G S+ VVNGLV++Y +CG NV A
Sbjct: 248 IRSGIESDVLVVNGLVNMYAKCG-------------------------------NVNTAH 276
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+LF++M R + SWN++I GY NS + EA + F + +R GI+P S T SVL A
Sbjct: 277 KLFERMP----IRDVASWNAIIGGYSLNSQHHEALAFFNRMQVR-GIKPNSITMVSVLPA 331
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CA + +L +G++IH AI G +S+ VG ALV MY + ++ +A F+ + +
Sbjct: 332 CAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAW 391
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360
G+ + + A+ LF EM + + PD + + +L AC+ +E+GKQ+H Y IR
Sbjct: 392 NAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIR 451
Query: 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH 420
G++S+V +GT LVD+YAKCG++ A+ ++R+ D+VS M+ AY +HGHG++ +A
Sbjct: 452 SGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALAL 511
Query: 421 FRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLS 479
F ++ +G + DHI+F + L+AC HAG + G ++F M + Y + P L+HY C+VDLL
Sbjct: 512 FSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLG 571
Query: 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM 539
RAG L EA IK + + PD+ +WGALLG C H N+E G+ AA L EL+P+N G YV+
Sbjct: 572 RAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVL 631
Query: 540 LANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTI 599
L+N++A A RW D+A+ R+ MK++ + K PGCS + ++ F DR+H +SE+IY +
Sbjct: 632 LSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAM 691
Query: 600 ID 601
++
Sbjct: 692 LE 693
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551964|ref|XP_003544342.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02330-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/440 (53%), Positives = 293/440 (66%), Gaps = 56/440 (12%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR--TLSSVLPACARLQKLSLGKE 115
NL SW+A++ + + G+ EEA + ++ EG+ VL C L + LG++
Sbjct: 113 NLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQ 172
Query: 116 FHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGN 175
HG ++ GDM SA ++FS+FS K+ S N +I GY ENGN
Sbjct: 173 MHGMALKHD------------------GDMKSAFEMFSRFSRKSAASYNAMIAGYWENGN 214
Query: 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235
+ +A+ELFD+ME GVQ+ ISWNSMISGYVD SL+DEA+S+FRDLL ++GIEP SFT G
Sbjct: 215 LFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLL-KEGIEPDSFTLG 273
Query: 236 SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD----- 290
SVL CADM S+R+GKE H+LAI GLQS++ VGGALVEMY + QD+VAAQMAFD
Sbjct: 274 SVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSER 333
Query: 291 ----------------EIENIENLLGKMKEDGFEPNVYTWN--------------AMQLF 320
+ E I L KM+ DGFEPNVYTWN AMQLF
Sbjct: 334 DLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLF 393
Query: 321 SEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKC 380
+EM +L PDIYTVGIIL+ACS LAT++RGKQVHAY+IR G+DSDVHIG ALVDMYAKC
Sbjct: 394 TEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKC 453
Query: 381 GSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL 440
G +KH Y IS P+LVS NAMLTAYAMHGHG+EGIA FRR+LAS RPDH++FL+ L
Sbjct: 454 GDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVL 513
Query: 441 SACVHAGSIKTGSEFFDLMA 460
S+CVHAGS++ G E LMA
Sbjct: 514 SSCVHAGSLEIGHECLALMA 533
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/602 (35%), Positives = 366/602 (60%), Gaps = 17/602 (2%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y K GS+ A KVF MP + SWN++++A + G V E + M D VS
Sbjct: 54 YAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDG-----VS 108
Query: 62 WSAVIGGFTQNGYDEEAIGML-FRMQAEG-LEPNARTLSSVLPACARLQKLSLGKEFHGY 119
W+++I G+ G +++ ++ +G N T S++L ++ + LG++ HG+
Sbjct: 109 WNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGH 168
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+ + GFMS FV + LVD+Y + G + A K+F + KN V NT+I+G G V ++
Sbjct: 169 VVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDS 228
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
+ LF +M +R ISW SMI+G+ N L +A +FR++ + + ++ +TFGSVL
Sbjct: 229 KRLFFEMR----ERDSISWTSMITGFTQNGLDRDAIDIFREMKL-ENLQMDQYTFGSVLT 283
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI--ENIEN 297
AC + +L++GK++HA I + + FV ALV+MYC+ +++ +A+ F ++ +N+ +
Sbjct: 284 ACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVS 343
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
+ G+ N Y+ A++ FS+M + PD +T+G ++S+C++LA++E G Q HA
Sbjct: 344 WTAMLV--GYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHAR 401
Query: 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417
A+ G S + + ALV +Y KCGS++ + + IS D V+ A+++ YA G E
Sbjct: 402 ALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANET 461
Query: 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFD-LMAYYDVKPSLKHYTCMVD 476
I F +LA G +PD ++F+ LSAC AG ++ G++ F+ ++ + + P HYTCM+D
Sbjct: 462 IGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMID 521
Query: 477 LLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536
L SRAG + EA FI K+P +PD++ W LL C +GN++ G+ AA+ L+EL+P+NT +
Sbjct: 522 LFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTAS 581
Query: 537 YVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
YV+L++++A G+W ++AR R+ M+D+ + K PGCSWI+ ++++H F A D+S+ S++I
Sbjct: 582 YVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQI 641
Query: 597 YT 598
Y+
Sbjct: 642 YS 643
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/577 (37%), Positives = 333/577 (57%), Gaps = 3/577 (0%)
Query: 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81
D V+WN++++ A +G EA + M L + PN+VSW+A+I G QNGYD EA+ +
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349
Query: 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY-ITRNGFMSNPFVVNGLVDVYR 140
+M EG++PN+ T++S + AC L L G+E HGY I S+ V N LVD Y
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409
Query: 141 RCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNS 200
+C + A + F + VS N ++ GY G+ EA EL +M+ G++ II+WN
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469
Query: 201 MISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL 260
+++G+ A F+ + G++P + T L AC + +L+ GKEIH +
Sbjct: 470 LVTGFTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRN 528
Query: 261 GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLF 320
++ T VG AL+ MY L A F E+ + ++ + + NA+ L
Sbjct: 529 HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 588
Query: 321 SEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKC 380
EM ++ + T+ L ACS LA + +GK++H + IRCG D+ I +L+DMY +C
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 648
Query: 381 GSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL 440
GS++ +R + + DLVS N M++ Y MHG G + + F++ G +P+HI+F + L
Sbjct: 649 GSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLL 708
Query: 441 SACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPD 499
SAC H+G I+ G ++F +M Y + P+++ Y CMVDLLSRAG+ E EFI+K+P P+
Sbjct: 709 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPN 768
Query: 500 SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559
+ +WG+LLG C H N + + AA L ELEP ++GNYV++AN+++ AGRW D A+ R
Sbjct: 769 AAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCL 828
Query: 560 MKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
MK+R + K PGCSWIE + ++H F D SH E+I
Sbjct: 829 MKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQI 865
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/577 (37%), Positives = 332/577 (57%), Gaps = 3/577 (0%)
Query: 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81
D V+WN++++ A +G EA + M L + PN+VSW+A+I G QNGYD EA+ +
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349
Query: 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY-ITRNGFMSNPFVVNGLVDVYR 140
+M EG++PN+ T++S + AC L L G+E HGY I S+ V N LVD Y
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409
Query: 141 RCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNS 200
+C + A + F + VS N ++ GY G+ EA EL +M+ G++ II+WN
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469
Query: 201 MISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL 260
+++G+ A F+ + G++P + T L AC + +L+ GKEIH +
Sbjct: 470 LVTGFTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRN 528
Query: 261 GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLF 320
++ T VG AL+ MY L A F E+ + ++ + + NA+ L
Sbjct: 529 HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 588
Query: 321 SEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKC 380
EM ++ + T+ L ACS LA + +GK++H + IRCG D+ I +L+DMY +C
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 648
Query: 381 GSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL 440
GS++ +R + + DLVS N M++ Y MHG G + + F+ G +P+HI+F + L
Sbjct: 649 GSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLL 708
Query: 441 SACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPD 499
SAC H+G I+ G ++F +M Y + P+++ Y CMVDLLSRAG+ E EFI+K+P P+
Sbjct: 709 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPN 768
Query: 500 SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559
+ +WG+LLG C H N + + AA L ELEP ++GNYV++AN+++ AGRW D A+ R
Sbjct: 769 AAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCL 828
Query: 560 MKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
MK+R + K PGCSWIE + ++H F D SH E+I
Sbjct: 829 MKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQI 865
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 601 | ||||||
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.760 | 0.524 | 0.367 | 2.6e-98 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.901 | 0.637 | 0.366 | 1.5e-97 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.981 | 0.846 | 0.327 | 3.3e-95 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.965 | 0.780 | 0.325 | 8.1e-92 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.742 | 0.632 | 0.339 | 8e-91 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.743 | 0.460 | 0.334 | 2.1e-90 | |
| TAIR|locus:2057630 | 727 | AT2G33680 "AT2G33680" [Arabido | 0.718 | 0.594 | 0.353 | 2.7e-90 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.900 | 0.730 | 0.344 | 1.4e-89 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.742 | 0.633 | 0.318 | 4.4e-88 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.727 | 0.439 | 0.364 | 3.9e-87 |
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 173/471 (36%), Positives = 277/471 (58%)
Query: 135 LVDVYRRCGD--MLSALKIFSKFSIKNEVS-----CNTIIVGYCENGNVAEARELFDQME 187
+V V+ C D ++S + +K S CNT++ Y + G++ A+ +F +M
Sbjct: 299 IVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 358
Query: 188 HLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSL 247
R ++S+ SMI+GY L EA +F ++ +GI P +T +VL CA L
Sbjct: 359 ----DRSVVSYTSMIAGYAREGLAGEAVKLFEEM-EEEGISPDVYTVTAVLNCCARYRLL 413
Query: 248 RKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGF 307
+GK +H L D FV AL++MY + + A++ F E+ + + G+
Sbjct: 414 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 473
Query: 308 EPNVYTWNAMQLFSEMLSLD-LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSD 366
N Y A+ LF+ +L +PD TV +L AC+SL+ ++G+++H Y +R GY SD
Sbjct: 474 SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 533
Query: 367 VHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA 426
H+ +LVDMYAKCG+L A + + I++ DLVS M+ Y MHG GKE IA F ++
Sbjct: 534 RHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593
Query: 427 SGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY-DVKPSLKHYTCMVDLLSRAGELG 485
+G D ISF+S L AC H+G + G FF++M + ++P+++HY C+VD+L+R G+L
Sbjct: 594 AGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLI 653
Query: 486 EAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545
+AY FI+ +P+ PD+ +WGALL GC H +++ + A+++ ELEP NTG YV++AN++A
Sbjct: 654 KAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYA 713
Query: 546 YAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
A +W + R R+++ R + K+PGCSWIE + ++ F A D S+ +E I
Sbjct: 714 EAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENI 764
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 204/557 (36%), Positives = 315/557 (56%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACARLQKLSLGKEF 116
++VSW+++I + + G + A+ M RM E G P+ TL +VLP CA L SLGK+
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251
Query: 117 HGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNV 176
H + + + N FV N LVD+Y +CG M A +FS S+K+ VS N ++ GY + G
Sbjct: 252 HCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRF 311
Query: 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236
+A LF++M+ ++ +++W++ ISGY L EA + R +L GI+P T S
Sbjct: 312 EDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS-SGIKPNEVTLIS 370
Query: 237 VLIACADMNSLRKGKEIHALAIAL-------GLQSDTFVGGALVEMYCRYQDLVAAQMAF 289
VL CA + +L GKEIH AI G + V L++MY + + + A+ F
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430
Query: 290 DEIENIEN--LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLT--PDIYTVGIILSACSSL 345
D + E + + G+ + A++L SEM D P+ +T+ L AC+SL
Sbjct: 431 DSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL 490
Query: 346 ATMERGKQVHAYAIRCGYDS-DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAM 404
A + GKQ+HAYA+R ++ + + L+DMYAKCGS+ ARL + + + V+ ++
Sbjct: 491 AALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSL 550
Query: 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYD 463
+T Y MHG+G+E + F + GF+ D ++ L L AC H+G I G E+F+ M +
Sbjct: 551 MTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFG 610
Query: 464 VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAA 523
V P +HY C+VDLL RAG L A I+++PM P V+W A L C HG +E G+ AA
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAA 670
Query: 524 DRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKF 583
+++ EL N+ G+Y +L+NL+A AGRW D+ R R M+ + + K PGCSW+E F
Sbjct: 671 EKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTF 730
Query: 584 RASDRSHDRSEEIYTII 600
D++H ++EIY ++
Sbjct: 731 FVGDKTHPHAKEIYQVL 747
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 199/608 (32%), Positives = 332/608 (54%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KCGSL+D ++VF MP+R+ +WNSVVT G + EA M D T
Sbjct: 65 YSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT----- 119
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W++++ GF Q+ EEA+ M EG N + +SVL AC+ L ++ G + H I
Sbjct: 120 WNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 179
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
++ F+S+ ++ + LVD+Y +CG++ A ++F + +N VS N++I + +NG EA +
Sbjct: 180 KSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD 239
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
+F M V+ ++ S+IS S + ++ D + + +
Sbjct: 240 VFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY 299
Query: 242 ADMNSLRKGKEIH-ALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
A + +++ + I ++ I + + + G + + L+ +MA + + L+
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360
G+ N A+ LF + + P Y+ IL AC+ LA + G Q H + ++
Sbjct: 360 -----GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLK 414
Query: 361 CGY------DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHG 414
G+ + D+ +G +L+DMY KCG ++ L ++++ D VS NAM+ +A +G+G
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYG 474
Query: 415 KEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTC 473
E + FR +L SG +PDHI+ + LSAC HAG ++ G +F M + V P HYTC
Sbjct: 475 NEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTC 534
Query: 474 MVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533
MVDLL RAG L EA I+++PM PDSV+WG+LL C H N+ G+ A++L+E+EP+N
Sbjct: 535 MVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSN 594
Query: 534 TGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRS 593
+G YV+L+N++A G+W D+ R+ M+ + K PGCSWI+ + H F D+SH R
Sbjct: 595 SGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRK 654
Query: 594 EEIYTIID 601
++I++++D
Sbjct: 655 KQIHSLLD 662
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 193/593 (32%), Positives = 328/593 (55%)
Query: 11 AKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFT 70
A++VF +P+ + SWN+++ A + GL+ E E++ D V+W+ +I G++
Sbjct: 60 ARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDG-----VTWNVLIEGYS 114
Query: 71 QNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP 129
+G A+ M + R TL ++L + +SLGK+ HG + + GF S
Sbjct: 115 LSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYL 174
Query: 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189
V + L+ +Y G + A K+F +N V N+++ G G + +A +LF
Sbjct: 175 LVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFR----- 229
Query: 190 GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK 249
G+++ +SW +MI G N L EA FR++ ++ G++ + FGSVL AC + ++ +
Sbjct: 230 GMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ-GLKMDQYPFGSVLPACGGLGAINE 288
Query: 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP 309
GK+IHA I Q +VG AL++MYC+ + L A+ FD ++ + G+
Sbjct: 289 GKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQ 348
Query: 310 NVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHI 369
A+++F +M + PD YT+G +SAC++++++E G Q H AI G V +
Sbjct: 349 TGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTV 408
Query: 370 GTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF 429
+LV +Y KCG + + + ++ D VS AM++AYA G E I F +++ G
Sbjct: 409 SNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGL 468
Query: 430 RPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAY 488
+PD ++ +SAC AG ++ G +F LM + Y + PS+ HY+CM+DL SR+G L EA
Sbjct: 469 KPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAM 528
Query: 489 EFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548
FI +P PD++ W LL C + GNLE G+ AA+ LIEL+P++ Y +L++++A G
Sbjct: 529 RFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKG 588
Query: 549 RWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
+W +A+ R+ M+++ + K PG SWI+ + ++H F A D S ++IY ++
Sbjct: 589 KWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLE 641
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 768 (275.4 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 157/462 (33%), Positives = 262/462 (56%)
Query: 143 GDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMI 202
G + A K++ K+ ++ ++I G C+ G V EARE+FD+M +R +I+W +M+
Sbjct: 155 GRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS----ERSVITWTTMV 210
Query: 203 SGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGL 262
+GY N+ D+A +F D++ E T ++ S+L+ + +E+ +
Sbjct: 211 TGYGQNNRVDDARKIF-DVMP----EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPV--- 262
Query: 263 QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSE 322
A++ + ++ A+ FD ++ + + E N + A+ LF
Sbjct: 263 -KPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFIL 321
Query: 323 MLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382
M + P T+ ILS C+SLA++ GKQVHA +RC +D DV++ + L+ MY KCG
Sbjct: 322 MQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGE 381
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RPDHISFLSALS 441
L ++L + R + D++ N++++ YA HG G+E + F + SG +P+ ++F++ LS
Sbjct: 382 LVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLS 441
Query: 442 ACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS 500
AC +AG ++ G + ++ M + + VKP HY CMVD+L RAG EA E I + + PD+
Sbjct: 442 ACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDA 501
Query: 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560
+WG+LLG C +H L+ + A +LIE+EP N+G Y++L+N++A GRW+D+A R+ M
Sbjct: 502 AVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLM 561
Query: 561 KDRRMHKSPGCSWIEDRDEIHKF-RASDRSHDRSEEIYTIID 601
K R + KSPGCSW E +++H F R SH E I I+D
Sbjct: 562 KTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILD 603
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 155/463 (33%), Positives = 254/463 (54%)
Query: 146 LSALKIFSKFSIK-----NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ-RGIISWN 199
L +LK +S+K NE+ N + Y + G+++ A+ +F H G++ + + SWN
Sbjct: 411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVF----H-GIRSKTVNSWN 465
Query: 200 SMISGYVDNSLYDEAFSMFRDLLMR-DGIEPTSFTFGSVLIACADMNSLRKGKEIHALAI 258
++I G+ ++ D S+ L M+ G+ P SFT S+L AC+ + SLR GKE+H I
Sbjct: 466 ALIGGHAQSN--DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523
Query: 259 ALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQ 318
L+ D FV +++ +Y +L Q FD +E+ + G+ N + A+
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583
Query: 319 LFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYA 378
+F +M+ + ++ + ACS L ++ G++ HAYA++ + D I +L+DMYA
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 643
Query: 379 KCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLS 438
K GS+ + + + S NAM+ Y +HG KE I F + +G PD ++FL
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703
Query: 439 ALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI-KKIPM 496
L+AC H+G I G + D M + + +KP+LKHY C++D+L RAG+L +A + +++
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763
Query: 497 APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLART 556
D +W +LL C H NLE G+ A +L ELEP NYV+L+NL+A G+W D+ +
Sbjct: 764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823
Query: 557 RQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTI 599
RQ+M + + K GCSWIE ++ F +R D EEI ++
Sbjct: 824 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSL 866
|
|
| TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 155/438 (35%), Positives = 245/438 (55%)
Query: 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223
N ++ Y + ++ EA ++FD G R I+W++M++GY N EA +F +
Sbjct: 260 NALVTMYSKCESLNEACKMFDSS---G-DRNSITWSAMVTGYSQNGESLEAVKLFSRMFS 315
Query: 224 RDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLV 283
GI+P+ +T VL AC+D+ L +GK++H+ + LG + F ALV+MY + L
Sbjct: 316 A-GIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLA 374
Query: 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACS 343
A+ FD ++ + L G+ N A+ L+ M + + P+ T+ +L ACS
Sbjct: 375 DARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434
Query: 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNA 403
SLAT+E GKQVH + I+ G+ +V IG+AL MY+KCGSL+ L ++R D+VS NA
Sbjct: 435 SLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNA 494
Query: 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YY 462
M++ + +G G E + F +LA G PD ++F++ +SAC H G ++ G +F++M+
Sbjct: 495 MISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQI 554
Query: 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIA 522
+ P + HY CMVDLLSRAG+L EA EFI+ + +W LL C +HG E G A
Sbjct: 555 GLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYA 614
Query: 523 ADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHK 582
++L+ L + YV L+ ++ GR D+ R + M+ + K GCSWIE +++ H
Sbjct: 615 GEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHV 674
Query: 583 FRASDRSHDRSEEIYTII 600
F D H EE ++
Sbjct: 675 FVVGDTMHPMIEETKDLV 692
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 190/551 (34%), Positives = 305/551 (55%)
Query: 55 ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGK 114
+ PNL+ W+ + G + A+ + M + GL PN+ T VL +CA+ + G+
Sbjct: 95 QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 154
Query: 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG 174
+ HG++ + G + +V L+ +Y + G + A K+F K ++ VS +I GY G
Sbjct: 155 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRG 214
Query: 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF 234
+ A++LFD++ + ++SWN+MISGY + Y EA +F+D+ M+ + P T
Sbjct: 215 YIENAQKLFDEIP----VKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTM 269
Query: 235 GSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294
+V+ ACA S+ G+++H G S+ + AL+++Y + +L A F+ +
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 295 IENLLGKMKEDGF-EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQ 353
+ + G+ N+Y A+ LF EML TP+ T+ IL AC+ L ++ G+
Sbjct: 330 KDVISWNTLIGGYTHMNLYK-EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Query: 354 VHAYAIRC--GYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH 411
+H Y + G + + T+L+DMYAKCG ++ A + I L S NAM+ +AMH
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448
Query: 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKH 470
G F R+ G +PD I+F+ LSAC H+G + G F M Y + P L+H
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508
Query: 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530
Y CM+DLL +G EA E I + M PD V+W +LL C HGN+E G+ A+ LI++E
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568
Query: 531 PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSH 590
P N G+YV+L+N++A AGRW+++A+TR + D+ M K PGCS IE +H+F D+ H
Sbjct: 569 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 628
Query: 591 DRSEEIYTIID 601
R+ EIY +++
Sbjct: 629 PRNREIYGMLE 639
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 147/461 (31%), Positives = 263/461 (57%)
Query: 143 GDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMI 202
G + A K++ +K+ V+ +I G C G V EAR +FD+M +R +++W +MI
Sbjct: 155 GRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR----ERNVVTWTTMI 210
Query: 203 SGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGL 262
+GY N+ D A +F +M E T ++ S+L+ + +E +
Sbjct: 211 TGYRQNNRVDVARKLFE--VMP---EKTEVSWTSMLLGYTLSGRIEDAEEFFEVMP---- 261
Query: 263 QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSE 322
A++ + ++ A+ FD +E+ +N + +E + A+ LF++
Sbjct: 262 MKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQ 321
Query: 323 MLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382
M + P ++ ILS C++LA+++ G+QVHA+ +RC +D DV++ + L+ MY KCG
Sbjct: 322 MQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGE 381
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
L A+L + R S+ D++ N++++ YA HG G+E + F + +SG P+ ++ ++ L+A
Sbjct: 382 LVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTA 441
Query: 443 CVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV 501
C +AG ++ G E F+ M + + V P+++HY+C VD+L RAG++ +A E I+ + + PD+
Sbjct: 442 CSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDAT 501
Query: 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561
+WGALLG C +H L+ ++AA +L E EP+N G YV+L+++ A +W D+A R+ M+
Sbjct: 502 VWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMR 561
Query: 562 DRRMHKSPGCSWIEDRDEIHKF-RASDRSHDRSEEIYTIID 601
+ K PGCSWIE ++H F R ++H I +++
Sbjct: 562 TNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLE 602
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 165/453 (36%), Positives = 253/453 (55%)
Query: 154 KFSIKNEVSC-NTIIVGYCENGNVAEARELFDQM-EHLGVQRGIISWNSMISGYV--DNS 209
K I VS N ++ Y E G + E R++F M EH +SWNS+I + S
Sbjct: 443 KLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEH-----DQVSWNSIIGALARSERS 497
Query: 210 LYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVG 269
L EA F + R G + TF SVL A + ++ GK+IH LA+ + +
Sbjct: 498 L-PEAVVCFLNA-QRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTE 555
Query: 270 GALVEMYCRYQDLVAAQMAFDEI-ENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL 328
AL+ Y + ++ + F + E +N+ G+ N A+ L ML
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQ 615
Query: 329 TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARL 388
D + +LSA +S+AT+ERG +VHA ++R +SDV +G+ALVDMY+KCG L +A
Sbjct: 616 RLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALR 675
Query: 389 AYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAG 447
+ + + S N+M++ YA HG G+E + F + G P DH++F+ LSAC HAG
Sbjct: 676 FFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735
Query: 448 SIKTGSEFFDLMA-YYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGAL 506
++ G + F+ M+ Y + P ++H++CM D+L RAGEL + +FI+K+PM P+ ++W +
Sbjct: 736 LLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTV 795
Query: 507 LGGCV-SHGN-LEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564
LG C ++G E G+ AA+ L +LEP N NYV+L N++A GRW DL + R+KMKD
Sbjct: 796 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDAD 855
Query: 565 MHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIY 597
+ K G SW+ +D +H F A D+SH ++ IY
Sbjct: 856 VKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIY 888
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIT7 | PP151_ARATH | No assigned EC number | 0.3296 | 0.9284 | 0.8005 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 601 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-131 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-104 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-62 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-32 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-29 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 404 bits (1039), Expect = e-131
Identities = 207/602 (34%), Positives = 310/602 (51%), Gaps = 75/602 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG + A+ VF MP RDC+SWN
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWN--------------------------------- 257
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
A+I G+ +NG E + + F M+ ++P+ T++SV+ AC L LG+E HGY+
Sbjct: 258 ---AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ GF + V N L+ +Y G EA
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSW-------------------------------GEAE 343
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
++F +ME + +SW +MISGY N L D+A + L+ +D + P T SVL A
Sbjct: 344 KVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA-LMEQDNVSPDEITIASVLSA 398
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CA + L G ++H LA GL S V AL+EMY + + + A F I + +
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360
G N + A+ F +ML L L P+ T+ LSAC+ + + GK++HA+ +R
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH 420
G D + AL+D+Y +CG + +A D+VS N +LT Y HG G +
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYA-WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 421 FRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLS 479
F R++ SG PD ++F+S L AC +G + G E+F M Y + P+LKHY C+VDLL
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636
Query: 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM 539
RAG+L EAY FI K+P+ PD +WGALL C H ++E G++AA + EL+PN+ G Y++
Sbjct: 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696
Query: 540 LANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTI 599
L NL+A AG+W ++AR R+ M++ + PGCSW+E + ++H F D SH + +EI T+
Sbjct: 697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTV 756
Query: 600 ID 601
++
Sbjct: 757 LE 758
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = e-104
Identities = 168/509 (33%), Positives = 273/509 (53%), Gaps = 37/509 (7%)
Query: 94 ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFS 153
A T +++ AC L+ + K + ++ +GF + +++N ++ ++ +CG +
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML-------- 174
Query: 154 KFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE 213
+AR LFD+M +R + SW ++I G VD Y E
Sbjct: 175 -----------------------IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYRE 207
Query: 214 AFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALV 273
AF++FR + DG + TF +L A A + S R G+++H + G+ DTFV AL+
Sbjct: 208 AFALFR-EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 274 EMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIY 333
+MY + D+ A+ FD + + G+ + Y+ A+ L+ EM ++ D +
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326
Query: 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRI 393
T I++ S LA +E KQ HA IR G+ D+ TALVD+Y+K G ++ AR + R+
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
Query: 394 STPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGS 453
+L+S NA++ Y HG G + + F R++A G P+H++FL+ LSAC ++G + G
Sbjct: 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446
Query: 454 EFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVS 512
E F M+ + +KP HY CM++LL R G L EAY I++ P P MW ALL C
Sbjct: 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI 506
Query: 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCS 572
H NLE G++AA++L + P NYV+L NL+ +GR ++ A+ + +K + + P C+
Sbjct: 507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566
Query: 573 WIEDRDEIHKFRASDRSHDRSEEIYTIID 601
WIE + + H F + DR H +S EIY +D
Sbjct: 567 WIEVKKQDHSFFSGDRLHPQSREIYQKLD 595
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 2e-62
Identities = 146/539 (27%), Positives = 239/539 (44%), Gaps = 89/539 (16%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
M+ + G L A VF MPERD SWN +V
Sbjct: 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLV------------------------------ 159
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
GG+ + GY +EA+ + RM G+ P+ T VL C + L+ G+E H ++
Sbjct: 160 ------GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R GF + VVN L+ +Y +CGD++S AR
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVS-------------------------------AR 242
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR-DGIEPTSFTFGSVLI 239
+FD+M +R ISWN+MISGY +N E +F MR ++P T SV+
Sbjct: 243 LVFDRMP----RRDCISWNAMISGYFENGECLEGLELF--FTMRELSVDPDLMTITSVIS 296
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL 299
AC + R G+E+H + G D V +L++MY A+ F +E + +
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356
Query: 300 GKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAI 359
G+E N A++ ++ M +++PD T+ +LSAC+ L ++ G ++H A
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 360 RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA 419
R G S V + AL++MY+KC + A + I D++S +++ ++ E +
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476
Query: 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDL-----MAYYDVKPSLKHYTCM 474
FR++L + +P+ ++ ++ALSAC G++ G E + + P+ +
Sbjct: 477 FFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----AL 530
Query: 475 VDLLSRAGELGEAY-EFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532
+DL R G + A+ +F D V W LL G V+HG +R++E N
Sbjct: 531 LDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-32
Identities = 89/369 (24%), Positives = 147/369 (39%), Gaps = 102/369 (27%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
M+ KCG L DA+++F MPER NL
Sbjct: 167 MHVKCGMLIDARRLFDEMPER------------------------------------NLA 190
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW +IGG G EA + M +G + RT +L A A L G++ H +
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G + + FV L+D+Y +CGD + +AR
Sbjct: 251 LKTGVVGDTFVSCALIDMYSKCGD-------------------------------IEDAR 279
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD-GIEPTSFTFGSVLI 239
+FD M ++ ++WNSM++GY + +EA ++ + MRD G+ FTF ++
Sbjct: 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE--MRDSGVSIDQFTFSIMIR 333
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL 299
+ + L K+ HA I G D ALV++Y ++ + A+ FD +
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP------ 387
Query: 300 GKMKEDGFEPNVYTWNAM--------------QLFSEMLSLDLTPDIYTVGIILSACSSL 345
N+ +WNA+ ++F M++ + P+ T +LSAC
Sbjct: 388 --------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
Query: 346 ATMERGKQV 354
E+G ++
Sbjct: 440 GLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-32
Identities = 92/365 (25%), Positives = 157/365 (43%), Gaps = 65/365 (17%)
Query: 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223
N+ + C +G + +A +L + M+ L V VD Y ++FR
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVP-------------VDEDAY---VALFRLCEW 98
Query: 224 RDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLV 283
+ +E S L + SL G++ +G A++ M+ R+ +LV
Sbjct: 99 KRAVEEGSRVCSRAL---SSHPSL-------------GVR----LGNAMLSMFVRFGELV 138
Query: 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWN--------------AMQLFSEMLSLDLT 329
A F GKM E ++++WN A+ L+ ML +
Sbjct: 139 HAWYVF----------GKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLA 389
PD+YT +L C + + RG++VHA+ +R G++ DV + AL+ MY KCG + ARL
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 390 YKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449
+ R+ D +S NAM++ Y +G EG+ F + PD ++ S +SAC G
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 450 KTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509
+ G E + + ++ + G GEA + ++ D+V W A++ G
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISG 363
Query: 510 CVSHG 514
+G
Sbjct: 364 YEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 92/392 (23%), Positives = 166/392 (42%), Gaps = 66/392 (16%)
Query: 211 YDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGG 270
+ EA +F L + T+ +++ AC + S+R K ++ + G + D ++
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 271 ALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN--------------A 316
++ M+ + L+ A+ FDE+ E N+ +W A
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMP--------------ERNLASWGTIIGGLVDAGNYREA 208
Query: 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDM 376
LF EM + T ++L A + L + G+Q+H ++ G D + AL+DM
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 377 YAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISF 436
Y+KCG ++ AR + + V+ N+ML YA+HG+ +E + + + SG D +F
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 437 LSALSAC-----------VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELG 485
+ HAG I+TG D++A T +VDL S+ G +
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVA----------NTALVDLYSKWGRME 377
Query: 486 EAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAA---DRLIE--LEPNNTGNYVML 540
+A ++P + + W AL+ G +HG G A +R+I + PN+ ++ +
Sbjct: 378 DARNVFDRMPRK-NLISWNALIAGYGNHGR---GTKAVEMFERMIAEGVAPNHV-TFLAV 432
Query: 541 ANLFAYAG------RWSDLARTRQKMKDRRMH 566
+ Y+G ++K R MH
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 328 LTPD--IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKH 385
L D +YT I S C+ ++ +V + G +++VH AL+D A+ G +
Sbjct: 468 LKADCKLYTTLI--STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525
Query: 386 ARLAYKRIST----PDLVSQNAMLTAYAMHGHGKEGIAHFRRILA------SGFRPDHIS 435
A AY + + PD V NA+++A G + +LA PDHI+
Sbjct: 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSG----AVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA---YEFIK 492
+ + AC +AG + E + ++ Y++K + + YT V+ S+ G+ A Y+ +K
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 493 KIPMAPDSVMWGALL 507
K + PD V + AL+
Sbjct: 642 KKGVKPDEVFFSALV 656
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 9e-11
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 158 KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGY 205
+ V+ NT+I GYC+ G V EA +LF++M+ G++ + +++ +I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 36/123 (29%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y K G ++DA+ VF MP + NL+
Sbjct: 369 LYSKWGRMEDARNVFDRMPRK------------------------------------NLI 392
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+A+I G+ +G +A+ M RM AEG+ PN T +VL AC G E +
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
Query: 121 TRN 123
+ N
Sbjct: 453 SEN 455
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 79/318 (24%), Positives = 143/318 (44%), Gaps = 22/318 (6%)
Query: 4 KCGSLDDAKKVFKMMP----ERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNL 59
K G +D +VF M E + ++ +++ CA G V +A M S N P+
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-KNVKPDR 542
Query: 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEG--LEPNARTLSSVLPACARLQKLSLGKEFH 117
V ++A+I Q+G + A +L M+AE ++P+ T+ +++ ACA ++ KE +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK----NEVSCNTIIVGYCEN 173
I P V V+ + GD AL I+ K +EV + ++
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233
G++ +A E+ G++ G +S++S++ + + +A ++ D+ + PT T
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVST 721
Query: 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIE 293
+++ A + N L K E+ + LGL +T L+ R D A + D
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD---ADVGLD--- 775
Query: 294 NIENLLGKMKEDGFEPNV 311
LL + KEDG +PN+
Sbjct: 776 ----LLSQAKEDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 68/352 (19%), Positives = 141/352 (40%), Gaps = 59/352 (16%)
Query: 9 DDAKKVFKMMPER----DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSA 64
D A +V +++ E DC + ++++ CA +G V E M + E N+ ++ A
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGA 512
Query: 65 VIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNG 124
+I G + G +A G M+++ ++P+ ++++ AC +
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ------------------ 554
Query: 125 FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFD 184
+G VD R D+L+ +K + + ++ ++ G V A+E++
Sbjct: 555 --------SGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 185 QMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADM 244
+ ++ + ++ +D A S++ D+ + G++P F +++
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHA 662
Query: 245 NSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKE 304
L K EI A G++ T +L+ ++ A +++I++I
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--------- 713
Query: 305 DGFEPNVYTWNA--------------MQLFSEMLSLDLTPDIYTVGIILSAC 342
P V T NA +++ SEM L L P+ T I+L A
Sbjct: 714 -KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 64/308 (20%), Positives = 125/308 (40%), Gaps = 50/308 (16%)
Query: 226 GIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAA 285
G+E TFG+++ CA + K + + + ++ D V AL+ + A
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG---AV 558
Query: 286 QMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSL 345
AFD +L +MK +E +D PD TVG ++ AC++
Sbjct: 559 DRAFD-------VLAEMK-----------------AETHPID--PDHITVGALMKACANA 592
Query: 346 ATMERGKQV----HAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TPD 397
++R K+V H Y I+ + T V+ ++ G A Y + PD
Sbjct: 593 GQVDRAKEVYQMIHEYNIK----GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 398 LVSQNAMLTAYAMHGHGKEGIAHFRRIL---ASGFRPDHISFLSALSACVHAGSIKTGSE 454
V +A++ GH + F + G + +S+ S + AC +A + K E
Sbjct: 649 EVFFSALVDV---AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 455 FFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEF---IKKIPMAPDSVMWGALLGGCV 511
++ + ++P++ ++ L +L +A E +K++ + P+++ + LL
Sbjct: 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 512 SHGNLEFG 519
+ + G
Sbjct: 766 RKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 159 NEVSCNTIIVGYCENGNVAEARELFDQME 187
+ V+ NT+I G C G V EA EL D+ME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 195 IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
++++N++I GY +EA +F ++ R GI+P +T+ S+LI
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTY-SILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 57 PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACAR 106
P++V+++ +I G+ + G EEA+ + M+ G++PN T S ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGVQ 192
V+ NT+I G C+ G V EA ELF +M+ G++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 381 GSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA----SGFRPDHISF 436
++K A K I P L + N ML + +G R+L +G + D +
Sbjct: 420 RAVKEAFRFAKLIRNPTLSTFN-MLMSVCASSQDIDGA---LRVLRLVQEAGLKADCKLY 475
Query: 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGE---AYEFIKK 493
+ +S C +G + E F M V+ ++ + ++D +RAG++ + AY ++
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 494 IPMAPDSVMWGALLGGC 510
+ PD V++ AL+ C
Sbjct: 536 KNVKPDRVVFNALISAC 552
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 6e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGV 191
V+ N++I GYC+ G + EA ELF +M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 45/246 (18%)
Query: 4 KCGSLDDAKKVFKMMPERDCVS----WNSVVTACAANGLVLEALECLERMSSLDNETPNL 59
G +D AK+V++M+ E + + V +C+ G AL + M P+
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDE 649
Query: 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
V +SA++ G ++A +L + +G++ + SS++ AC+
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA------------ 697
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF-SIK--NEVSC-NTIIVGYCENGN 175
+ AL+++ SIK VS N +I CE
Sbjct: 698 -----------------------KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235
+ +A E+ +M+ LG+ I+++ ++ D + DGI+P
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCR 793
Query: 236 SVLIAC 241
+ C
Sbjct: 794 CITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 14/48 (29%)
Query: 309 PNVYTWN--------------AMQLFSEMLSLDLTPDIYTVGIILSAC 342
P+V T+N A++LF+EM + P++YT I++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGF 69
D V++N+++ G V EAL+ M + PN+ ++S +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK-PNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS 231
+++N++I G +EA +F++ + GIEP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKE-MKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGI 227
+++NS+ISGY +EA +F+++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK-EKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 601 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.97 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.87 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.82 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.34 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.13 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.06 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.04 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.03 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.86 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.83 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.8 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.65 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.45 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.42 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.39 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.39 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.29 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.19 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.18 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.15 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.13 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.13 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.93 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.89 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.83 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.8 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.8 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.76 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.62 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.61 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.44 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.34 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.19 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.05 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.03 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.03 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.02 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.91 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.9 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.8 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.17 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.15 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.11 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.05 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.93 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.9 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.63 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.59 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.44 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.39 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.38 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.26 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.05 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.66 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.51 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.28 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.15 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.0 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.98 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.53 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.41 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.29 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.1 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.99 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.9 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.87 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.6 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.97 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.92 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.59 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.74 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.51 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.34 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.31 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 88.7 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.64 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.56 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.33 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.26 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.23 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.14 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.82 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.72 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.56 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.15 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 87.03 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.88 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.26 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.87 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.86 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.5 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.42 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.06 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.53 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.45 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.43 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.23 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.21 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.62 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.78 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.68 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.47 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.51 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.69 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.43 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-86 Score=707.72 Aligned_cols=575 Identities=34% Similarity=0.621 Sum_probs=542.9
Q ss_pred CCCCCCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhH------------------
Q 045105 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSW------------------ 62 (601)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~------------------ 62 (601)
+|++.|+++.|.++|+++.+||..+||.++.+|++.|++++|+++|++|... +..||..||
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHH
Confidence 3688999999999999999999999999999999999999999999999876 566665555
Q ss_pred -----------------HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcC
Q 045105 63 -----------------SAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGF 125 (601)
Q Consensus 63 -----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 125 (601)
|.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 566666777778888888888875 46778888888888888888889999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHH
Q 045105 126 MSNPFVVNGLVDVYRRCGDMLSALKIFSKFS----IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSM 201 (601)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (601)
.||..+|+.++.++++.|+.+.|.+++..+. .||..+|+++|.+|++.|++++|.++|++|. .||..+|+.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHH
Confidence 9999999999999999999999999998876 5689999999999999999999999999997 6899999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 045105 202 ISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQD 281 (601)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (601)
|.+|++.|++++|+++|++|.. .|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|+++|+
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 9999999999999999999988 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH--------------HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc
Q 045105 282 LVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA--------------MQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347 (601)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 347 (601)
+++|.++|+ .|. .+|..+|++ +.+|++|.. +++||..||+.++.+|++.|+
T Consensus 440 ~~~A~~vf~----------~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 440 IDKALEVFH----------NIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHH----------hCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 999999999 888 678888875 688999986 699999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHC
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS 427 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 427 (601)
++.+.+++..+.+.|+.++..++++|+++|+++|++++|..+|+.+ .+|..+||++|.+|+++|+.++|+++|++|.+.
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCCccHHhHHHHHHHHhccCchHHHHHHHHHHH-hcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 045105 428 GFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGAL 506 (601)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 506 (601)
|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+.+||..+|++|
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999999999999999999999998887 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCCceeeeecC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (601)
+.+|..+|+.+.++.+.+++.+++|+++..|..++++|.+.|+|++|.++.+.|+++|++++||+||+.+.++++.|.++
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~ 743 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD 743 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhhcC
Q 045105 587 DRSHDRSEEIYTIID 601 (601)
Q Consensus 587 ~~~~~~~~~~~~~~~ 601 (601)
|++||++.+||.+|+
T Consensus 744 d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 744 DESHPQIKEINTVLE 758 (857)
T ss_pred CCCCcchHHHHHHHH
Confidence 999999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-76 Score=619.76 Aligned_cols=510 Identities=29% Similarity=0.504 Sum_probs=493.0
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG 134 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 134 (601)
.++..+|+.+|..|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456699999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
++.+|++.|+++.|.++|++|..||..+|+++|.+|++.|++++|+++|++|...|+.|+..+|+.++.++++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 294 (601)
.+++..+.+ .|+.||..+|+.++.+|++.|++++|.++|+.|. .+|..+|+.+|.+|++.|+.++|.++|+
T Consensus 244 ~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~---- 314 (697)
T PLN03081 244 QQLHCCVLK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY---- 314 (697)
T ss_pred HHHHHHHHH-hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH----
Confidence 999999888 9999999999999999999999999999999985 5689999999999999999999988888
Q ss_pred HHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHH
Q 045105 295 IENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV 374 (601)
Q Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (601)
+|. +.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.|+..++++|+
T Consensus 315 ------~M~---------------------~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 315 ------EMR---------------------DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred ------HHH---------------------HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 454 56788999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHH
Q 045105 375 DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (601)
++|+++|++++|.++|++|.++|..+||.||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 455 FFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 455 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
+|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++++..|+..+|++++.+|..+|+++.|..+++++.++.|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 9988765 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCCceeeeecCCCCCCchhhhhhhcC
Q 045105 534 TGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601 (601)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (601)
..+|..++++|.+.|+|++|.+++++|+++|+++.||++|+.+.+.++.|+++|++||++.+||.+|+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-71 Score=591.80 Aligned_cols=540 Identities=23% Similarity=0.369 Sum_probs=378.7
Q ss_pred CCCCCCchhHHHHHhhCCC----CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHH
Q 045105 2 YGKCGSLDDAKKVFKMMPE----RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEE 77 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 77 (601)
|.+.|++++|..+|+.+.+ |+..+|..++..|.+.+.++.+..++..+.+. +..++...+|.|+..|++.|+++.
T Consensus 61 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~ 139 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVH 139 (857)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHH
Confidence 4567777888777777764 45555555555555555555555555554443 334444555555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 045105 78 AIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS- 156 (601)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 156 (601)
|.++|++|. +||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++++|+..++++.+.+++..+.
T Consensus 140 A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 140 AWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 555555553 344455555555555555555555555555555555555555555555555555555544444443
Q ss_pred ---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhh
Q 045105 157 ---IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233 (601)
Q Consensus 157 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 233 (601)
.+|..+|+++|.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.. .|+.||..|
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~t 290 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMT 290 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhH
Confidence 2344455555555555555555555555554 34445555555555555555555555555544 445555555
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhh
Q 045105 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYT 313 (601)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 313 (601)
|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+ .|. .||..+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~----------~m~----~~d~~s 356 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS----------RME----TKDAVS 356 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh----------hCC----CCCeee
Confidence 555555555555555555555555555555555555555555555555555555555 444 344444
Q ss_pred hhH--------------HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 045105 314 WNA--------------MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAK 379 (601)
Q Consensus 314 ~~~--------------~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (601)
|++ +.+|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 442 455556667788999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 380 CGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
+|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 58999999999999999999999999999888
Q ss_pred HhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCchH
Q 045105 460 AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL--EPNNTGNY 537 (601)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~ 537 (601)
.+.|+.++..++++|+++|++.|++++|.++|+.+ .||..+|++++.+|+++|+.++|.+++++|.+. .| |..+|
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~ 592 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTF 592 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccH
Confidence 99999999999999999999999999999999888 788899999999999999999999999988875 34 78888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-hcCCccCC
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMK-DRRMHKSP 569 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~-~~~~~~~~ 569 (601)
..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 888888999999999999999998 67776653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=559.06 Aligned_cols=512 Identities=16% Similarity=0.230 Sum_probs=476.0
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++...|..++..|++.|++++|+++|++|.+.+..+++..+++.++..|.+.|..++|.++++.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 5677899999999999999999999999999866678899999999999999999999999999973 999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS----IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 176 (601)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCChhhHHHHHHHhcccCCHHHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR-DGIEPTSFTFGSVLIACADMNSLRKGKEIHA 255 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 255 (601)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|... .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999753 6799999999999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHH
Q 045105 256 LAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTV 335 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 335 (601)
.|.+.|+.|+..+|+.+|.+|++.|++++|.++|+ +|. +.|+.||..+|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~----------eM~---------------------~~Gv~PD~~Ty 652 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD----------DMK---------------------KKGVKPDEVFF 652 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH----------HHH---------------------HcCCCCCHHHH
Confidence 99999999999999999999999999999998888 555 56778899999
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHc
Q 045105 336 GIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TPDLVSQNAMLTAYAMH 411 (601)
Q Consensus 336 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~ 411 (601)
+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+||.||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999995 69999999999999999
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh----hcC-----
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS----RAG----- 482 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g----- 482 (601)
|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++..+. +++
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999987643 222
Q ss_pred --------------ChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCchHHHHHHHH
Q 045105 483 --------------ELGEAYEFIKKI---PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL-EPNNTGNYVMLANLF 544 (601)
Q Consensus 483 --------------~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~ 544 (601)
..++|..+|++| ++.||..||+.++..+...++.+.+..+++.+... .+.+..+|..++..+
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 236799999999 78999999999997777888888888888776543 344778999999987
Q ss_pred HHcCCH-HHHHHHHHHHhhcCCccCCC
Q 045105 545 AYAGRW-SDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 545 ~~~g~~-~~A~~~l~~~~~~~~~~~~~ 570 (601)
|++ ++|..++++|.+.|+.|+..
T Consensus 893 ---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 893 ---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 443 68999999999999988864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=545.86 Aligned_cols=490 Identities=14% Similarity=0.198 Sum_probs=457.3
Q ss_pred CCCCCCchhHHHHHhhCCCCCc-----cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChH
Q 045105 2 YGKCGSLDDAKKVFKMMPERDC-----VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDE 76 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~ 76 (601)
|.+.|++++|.++|++|.+++. ..++.++..|.+.|..++|..+|+.|.. ||..+|+.+|.+|++.|+++
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHH
Confidence 4578999999999999997554 3566778889999999999999999753 99999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC
Q 045105 157 ----IKNEVSCNTIIVGYCENGNVAEARELFDQMEH--LGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT 230 (601)
Q Consensus 157 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 230 (601)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+ .|+.|+
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~ 613 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGT 613 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCC
Confidence 57999999999999999999999999999986 68899999999999999999999999999999998 899999
Q ss_pred hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCC
Q 045105 231 SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPN 310 (601)
Q Consensus 231 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~ 310 (601)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++ .|.
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~----------eM~------- 676 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ----------DAR------- 676 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH----------HHH-------
Confidence 999999999999999999999999999999999999999999999999999999988888 554
Q ss_pred hhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 045105 311 VYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAY 390 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (601)
+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 677 --------------k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 677 --------------KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred --------------HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC----CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc----c----------------
Q 045105 391 KRIS----TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH----A---------------- 446 (601)
Q Consensus 391 ~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~---------------- 446 (601)
++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 9986 699999999999999999999999999999999999999999999876532 1
Q ss_pred ---CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHH
Q 045105 447 ---GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP---MAPDSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 447 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
+..+.|..+|+.|.+.|+.||..||+.++.++++.+....+..+++.|+ ..|+..+|++++.++.+. .++|.
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 1236799999999999999999999999999999999999999999884 456789999999998443 36899
Q ss_pred HHHHHHHhcC
Q 045105 521 IAADRLIELE 530 (601)
Q Consensus 521 ~~~~~~~~~~ 530 (601)
.++++|.+.+
T Consensus 901 ~l~~em~~~G 910 (1060)
T PLN03218 901 SLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHcC
Confidence 9999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=489.95 Aligned_cols=504 Identities=15% Similarity=0.157 Sum_probs=449.4
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++..+|+.++..|.+.|++++|+++|+.|...++..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45568999999999999999999999999986557899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS----IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 176 (601)
+..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999995 4899999999999999999999999999996 57889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
+.+.+++..+.+.|+.||..+|+.||.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998853 6899999999999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 257 AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
|.+.|+.||..+|+.++.+|++.|++++|.+++. .|. +.|+.||..+|+
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~----------~m~---------------------~~g~~~d~~~~~ 364 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA----------GLI---------------------RTGFPLDIVANT 364 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH----------HHH---------------------HhCCCCCeeehH
Confidence 9999999999999999999999999999988887 554 456778888889
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHcC
Q 045105 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TPDLVSQNAMLTAYAMHG 412 (601)
Q Consensus 337 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~ 412 (601)
.++.+|++.|+++.|.++|+.|. .||..+|+++|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999886 4789999999999999999999999999987 699999999999999999
Q ss_pred ChhhHHHHHHHHHH-CCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHH
Q 045105 413 HGKEGIAHFRRILA-SGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI 491 (601)
Q Consensus 413 ~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (601)
..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++. .++.|+..+|++|+.+|...|+.+.|..++
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999986 68999999999999999999999999999864 468899999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHH--------H--HH-HHcCCHHHHHHH
Q 045105 492 KKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN--NTGNYVMLA--------N--LF-AYAGRWSDLART 556 (601)
Q Consensus 492 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~--------~--~~-~~~g~~~~A~~~ 556 (601)
+++ +..| +..+|..++..|++.|++++|.++++.|.+.+-. +...|..+. . .. ....-++...++
T Consensus 518 ~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 887 5566 4679999999999999999999999999986421 111111110 0 00 001224556677
Q ss_pred HHHHhhcCCccCCCc
Q 045105 557 RQKMKDRRMHKSPGC 571 (601)
Q Consensus 557 l~~~~~~~~~~~~~~ 571 (601)
..+|.+.|..|++..
T Consensus 598 ~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 598 MKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHcCCCCCcch
Confidence 888888888776553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=306.96 Aligned_cols=537 Identities=14% Similarity=0.058 Sum_probs=413.0
Q ss_pred CCCCCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 2 YGKCGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|.++|+++.+ ..+.+...+..+...+...|++++|
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCCChHHH
Confidence 3467999999999998875 3456788888999999999999999999887 4456777888889999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 045105 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS-- 156 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 156 (601)
.+.++.+.+... ........++..+.+.|+++.|..+++.+... .+.+..++..+..++...|++++|.+.|++..
T Consensus 417 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 417 IADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 999999887642 23345566777888899999999999998775 35667788889999999999999999998875
Q ss_pred -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 045105 157 -IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235 (601)
Q Consensus 157 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 235 (601)
..+...+..+...+...|++++|.+.|+.+...+ +.+..++..+...+.+.|++++|..+++++... .+.+...+.
T Consensus 495 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 571 (899)
T TIGR02917 495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPAL 571 (899)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHH
Confidence 2355667788888999999999999999998765 456778888889999999999999999988752 334556677
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh
Q 045105 236 SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315 (601)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (601)
.+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+ .+.+.. +.+...+.
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~~-~~~~~~~~ 639 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFK----------KLLALQ-PDSALALL 639 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH----------HHHHhC-CCChHHHH
Confidence 78888899999999999999887654 5567788899999999999999999888 443221 11111111
Q ss_pred --------------HHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 045105 316 --------------AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG 381 (601)
Q Consensus 316 --------------~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 381 (601)
++..++.+... .+.+..++..+...+...|+++.|..+++.+.+.+ +.+...+..+...+.+.|
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 23444444432 23346677777888888888888888888877765 345666777777888888
Q ss_pred ChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 382 SLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 382 ~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
++++|...|+.+. .|+..++..+..++.+.|++++|...++++.+.. +.+...+..+...|...|++++|...|+.+
T Consensus 718 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 8888888888765 3555667777788888888888888888887753 455667777778888888888888888666
Q ss_pred HhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 460 AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
.+.. +.+..+++.+...+.+.|+ .+|+++++++ ...| +..++..+...+...|++++|.+.++++++.+|.++.++
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 6554 4556677788888888888 7788888776 3334 455667777778888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
..++.++.+.|++++|.+++++|.+
T Consensus 875 ~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 875 YHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 8888888888888888888887753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=296.19 Aligned_cols=540 Identities=14% Similarity=0.078 Sum_probs=452.9
Q ss_pred CCCCCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 2 YGKCGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|...++.+.+ ..+.+...+..+...+.+.|++++|
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG--LDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3467999999999999874 3455677888899999999999999999987 4566788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 045105 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI- 157 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 157 (601)
.++|+++.+.. +.+...+..+...+...|+++.|.+.++.+.+... ........++..+.+.|++++|..+++.+..
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999998763 33556777888888999999999999999988653 3345566788899999999999999998863
Q ss_pred --CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 045105 158 --KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235 (601)
Q Consensus 158 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 235 (601)
++..++..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.|+++... .+.+..++.
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 537 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAIL 537 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHH
Confidence 367789999999999999999999999998764 445667788889999999999999999999862 344667788
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh
Q 045105 236 SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315 (601)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (601)
.+...+...|+.++|...++.+...+ +.+...+..++..|...|++++|...++ .+.+.. +.+...|.
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILN----------EAADAA-PDSPEAWL 605 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHH----------HHHHcC-CCCHHHHH
Confidence 88889999999999999999998765 4566778889999999999999999998 444321 22233332
Q ss_pred --------------HHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 045105 316 --------------AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG 381 (601)
Q Consensus 316 --------------~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 381 (601)
++..++.+.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 256666665543 3456678888899999999999999999988754 345778888999999999
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHH
Q 045105 382 SLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDL 458 (601)
Q Consensus 382 ~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (601)
++++|..+++.+. ..+...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|.+.++.
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999887 356667888889999999999999999999986 45557788889999999999999999977
Q ss_pred HHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 459 MAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 459 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
+.+.. +.+...+..+...|.+.|++++|.+.|+++ ... ++..++..+...+...|+ ++|...++++.+..|+++..
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 66543 556778899999999999999999999988 233 477889999999999999 88999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 537 YVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
+..++.++...|++++|.+.++++.+.++.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999988753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-24 Score=238.58 Aligned_cols=539 Identities=12% Similarity=0.069 Sum_probs=323.8
Q ss_pred CCCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhH----------------HH
Q 045105 4 KCGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSW----------------SA 64 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~----------------~~ 64 (601)
..++.|.|.+.++++.. .++..+..++..+.+.|+.++|...++++.+. .|.+...+ ..
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHH
Confidence 46888999999988874 45677888888889999999999999999884 33333332 23
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Q 045105 65 VIGGFTQNGYDEEAIGMLFRMQAEGLEPNART-LSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCG 143 (601)
Q Consensus 65 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 143 (601)
+...+.+.|++++|.+.|+.+.+.+ +|+... ...+.......++.++|.+.++.+.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3446788899999999999988653 333321 1111122234588899999999998874 446667788888888899
Q ss_pred CHHHHHHHHhhcCCCCc-----------------------hhH----------------------------------HHH
Q 045105 144 DMLSALKIFSKFSIKNE-----------------------VSC----------------------------------NTI 166 (601)
Q Consensus 144 ~~~~a~~~~~~~~~~~~-----------------------~~~----------------------------------~~l 166 (601)
+.++|+..|+++..... ..+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999998887631100 000 011
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH-----------
Q 045105 167 IVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG----------- 235 (601)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 235 (601)
...+...|++++|+..|++..... +.+...+..+..++.+.|++++|+..|++..+...-.+....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667899999999999998764 34677888899999999999999999999876222222211111
Q ss_pred -HHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCC-hhh
Q 045105 236 -SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPN-VYT 313 (601)
Q Consensus 236 -~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 313 (601)
.....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|.+.|+.. .+. .|+ ...
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a----------L~~--~p~~~~a 421 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA----------LRM--DPGNTNA 421 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----------HHh--CCCCHHH
Confidence 12345678899999999999999875 345667778899999999999999999843 221 111 111
Q ss_pred hh-------------HHHHHHHHHhCCC--------CCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhH
Q 045105 314 WN-------------AMQLFSEMLSLDL--------TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTA 372 (601)
Q Consensus 314 ~~-------------~~~~~~~~~~~~~--------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (601)
+. ++..+..+..... .-....+..+...+...|++++|...++...+... -++..+..
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~ 500 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYR 500 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 11 1111111100000 00011233344556667777777777777766542 24555566
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC--------------------
Q 045105 373 LVDMYAKCGSLKHARLAYKRIS--TP-DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-------------------- 429 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------------- 429 (601)
+...|.+.|++++|...++++. .| +...+..+...+...++.++|+..++.+.....
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 6777777777777777777654 12 333333333334445555555555554432211
Q ss_pred -------------------CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHH
Q 045105 430 -------------------RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEF 490 (601)
Q Consensus 430 -------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 490 (601)
+++...+..+...+.+.|++++|+..|+...... +.+...+..+...|...|++++|++.
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2222333444445555555555555554433322 22344445555555555555555555
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 491 IKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG------NYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 491 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
++++. ..| +...+..+..++...|++++|.+.++++.+..|+++. .+..++.++...|++++|.+.+++...
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55441 222 2333444444455555555555555555554443222 333445555555555555555555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-23 Score=226.65 Aligned_cols=516 Identities=10% Similarity=0.045 Sum_probs=283.9
Q ss_pred CCCCCCchhHHHHHhhCCCCCccchH----HHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHH
Q 045105 2 YGKCGSLDDAKKVFKMMPERDCVSWN----SVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEE 77 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 77 (601)
+.+.|++++|++.|+++.+.++.... .........|+.++|++.|+.+.+ ..|.+...+..+...+...|+.++
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~--~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA--DYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHccCCHHH
Confidence 34679999999999999863332211 111222345999999999999998 456677888999999999999999
Q ss_pred HHHHHHHHHHcCCC----------------CCHh---hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHH
Q 045105 78 AIGMLFRMQAEGLE----------------PNAR---TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV 138 (601)
Q Consensus 78 a~~~~~~m~~~~~~----------------p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 138 (601)
|+..++++.+.... ++.. .+...+..+-.......+...+.........|+.. .......
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~ 278 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLA 278 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHH
Confidence 99999998653210 0000 01111111111111122222332222221112111 1122334
Q ss_pred HHhcCCHHHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe-eeh------------HHHH
Q 045105 139 YRRCGDMLSALKIFSKFSI--K-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI-ISW------------NSMI 202 (601)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~------------~~li 202 (601)
+...|++++|+..|++... | +...+..+...+.+.|++++|+..|++..+....... ..| ....
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 4455556666555555431 2 4445555555555566666666655555543211100 001 0112
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 045105 203 SGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDL 282 (601)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (601)
..+.+.|++++|...|++.... .+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .++.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 3445555566666666555541 11223334444455555556666666555555443 122333333333332 2334
Q ss_pred HHHHHHhhhHHHHHHH-HhhchhcCCCC------------ChhhhhHHHHHHHHHhCCCCC-CHhHHHHHHHHhcCCCch
Q 045105 283 VAAQMAFDEIENIENL-LGKMKEDGFEP------------NVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATM 348 (601)
Q Consensus 283 ~~a~~~~~~~~~~~~~-~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 348 (601)
++|...++.+.....- ..... ..+.. .-..-.++..+++..+. .| +...+..+...+.+.|++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIE-RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 4444444322111000 00000 00000 00001112233332221 12 233344445555555555
Q ss_pred hhHHHHHHHHHHhCCCCchhHH--------------------------------------------hHHHHHHHhcCChH
Q 045105 349 ERGKQVHAYAIRCGYDSDVHIG--------------------------------------------TALVDMYAKCGSLK 384 (601)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~--------------------------------------------~~l~~~~~~~g~~~ 384 (601)
++|...++.+.+.... ++..+ ..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 5555555555443211 11111 12344556667777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC
Q 045105 385 HARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV 464 (601)
Q Consensus 385 ~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (601)
+|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++......
T Consensus 591 eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 591 EAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 77777663 23445566778888999999999999999999863 3456788899999999999999999997655432
Q ss_pred CcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MAP-------DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+.+...+..+..++...|++++|.++++++- ..| +...+..+...+...|++++|++.++++.....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 2345566778889999999999999999872 222 123556667788999999999999999987554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-21 Score=202.66 Aligned_cols=535 Identities=12% Similarity=0.035 Sum_probs=321.5
Q ss_pred CCCchhHHHHHhhCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPE--R-DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
.|++++|...|+++.+ | +..++..|...|.+.|+.++|+..+++..+ ..+-|...+..+ ..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH-HHh---ccChhHHHH
Confidence 4778888888888774 2 345667777777888888888888887776 333333333333 222 666666666
Q ss_pred HHHHHHcC--------------------------------------CCCCHhhHHHH-HHHHHhcCCcchHHHHHHHHHH
Q 045105 82 LFRMQAEG--------------------------------------LEPNARTLSSV-LPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 82 ~~~m~~~~--------------------------------------~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 122 (601)
++++.+.. ..|+..+.... .+.|...++++.|.+++..+.+
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 66665541 11122222222 4555556666666666666666
Q ss_pred hcCCCchHHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCeeehH-
Q 045105 123 NGFMSNPFVVNGLVDVYRR-CGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ-RGIISWN- 199 (601)
Q Consensus 123 ~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~- 199 (601)
.+ +.+......|..+|.. .++ +.+..+++.....+...+..+...+.+.|+.++|.+++.++...... |+..+|.
T Consensus 211 ~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 211 QN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 65 2333444455555555 244 66666655433446667778888888888888888888887654222 2222211
Q ss_pred -----------------------------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHH
Q 045105 200 -----------------------------SMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 200 -----------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
.++..+.+.++++.+.++.. +.|.......-..+....+...++
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHH
Confidence 11344455555554444421 223332211111112222334444
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH----------HHHHHhhchhcCCC------------
Q 045105 251 KEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN----------IENLLGKMKEDGFE------------ 308 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~~g~~------------ 308 (601)
.+.+..+.+.. +-+......+.-...+.|+.++|.++|...-. ...-+..+......
T Consensus 362 ~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 362 LRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 44444443331 11222222222223344444444444443211 00000000000000
Q ss_pred ----CChhhhh--------HHHHHHHHHhCCC-CC--CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHH
Q 045105 309 ----PNVYTWN--------AMQLFSEMLSLDL-TP--DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTAL 373 (601)
Q Consensus 309 ----~~~~~~~--------~~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (601)
+....|- +...+.... +. ++ +...+..+..++.. ++.++|...+....... |+......+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 0000000 011111111 12 23 45566666666665 78888988777776554 444443344
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchH
Q 045105 374 VDMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIK 450 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~ 450 (601)
...+...|++++|...|+++. .|+...+..+...+.+.|++++|...+++.++.. |+. ..+..+...+...|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 555568999999999998766 3455556677778889999999999999998864 443 33434444555679999
Q ss_pred HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 451 TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
+|...++...+. .|+...+..+..++.+.|+.++|+..+++. ...| +...+..+...+...|+.++|++.++++.+
T Consensus 594 eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 594 LALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999766554 456778888999999999999999999887 4566 556777777788999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 529 LEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|+++..+..++.++...|++++|...+++..+..
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999887665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-20 Score=193.39 Aligned_cols=508 Identities=12% Similarity=0.020 Sum_probs=324.8
Q ss_pred chHHHHHHH--HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 25 SWNSVVTAC--AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 25 ~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
++-.+..+. ...|++++|+..|+...+ ..|-+..++..|...|...|++++|+..+++..+. .|+...|..++.
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~--~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQ--QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHH
Confidence 444444443 335999999999999998 56667889999999999999999999999999986 666666665553
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHH--------HHhcCCHHHHHHHHhhcCCCC--chhHHH-HHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV--------YRRCGDMLSALKIFSKFSIKN--EVSCNT-IIVGYC 171 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~-li~~~~ 171 (601)
.+ ++.++|..+++++.+.. +-+..++..+... |.+.+...++++ .+...++ ..+... +...|.
T Consensus 120 ~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 120 AI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred Hh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHH
Confidence 33 88999999999999874 3344555555554 667766666666 3333333 333333 378888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh-CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHH
Q 045105 172 ENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD-NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
+.|++++|++++.++.+.+. .+..-...|..+|.. .++ +.+..+++. ...-+......+...+...|+.+.|
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888877652 233333344444444 233 444444321 1223444444555555555555555
Q ss_pred HHHHHHHHHc------------------------------------------------------------CCCCchhHHH
Q 045105 251 KEIHALAIAL------------------------------------------------------------GLQSDTFVGG 270 (601)
Q Consensus 251 ~~~~~~~~~~------------------------------------------------------------~~~~~~~~~~ 270 (601)
.+++.++... .+.|....
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 344 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM-- 344 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH--
Confidence 5544443321 11121111
Q ss_pred HHHHHHH--hcCCHHHHHHHhhhHHHHHHHHhhchhcCC----CCChhhhhH---------HHHHHHHHh--CCCCCCHh
Q 045105 271 ALVEMYC--RYQDLVAAQMAFDEIENIENLLGKMKEDGF----EPNVYTWNA---------MQLFSEMLS--LDLTPDIY 333 (601)
Q Consensus 271 ~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~---------~~~~~~~~~--~~~~p~~~ 333 (601)
..+.... ..+...++...+. .|.+... .-+..+|.+ -.+++.... ....++..
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~----------~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLAR----------LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HHHHHhhccccCchhHHHHHHH----------HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 1111111 2355555555555 2221100 001112221 122322222 11222333
Q ss_pred HHHHHHHHhcCCCc---hhhH----------------------HHHHHHHHHh-CC-CC--chhHHhHHHHHHHhcCChH
Q 045105 334 TVGIILSACSSLAT---MERG----------------------KQVHAYAIRC-GY-DS--DVHIGTALVDMYAKCGSLK 384 (601)
Q Consensus 334 ~~~~li~~~~~~~~---~~~a----------------------~~~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~ 384 (601)
....++..+.+.+. ..++ .......... +. ++ +...+..+..++.. ++++
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 34455555555544 2222 2222222221 12 33 56677777777776 8899
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc
Q 045105 385 HARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 385 ~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (601)
+|...+.+.. .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.
T Consensus 494 eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 494 VALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999777665 355433333344456899999999999998664 555556667778889999999999999776665
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
. +.+...+..+...+.+.|++++|+..+++. ...|+...+..+...+.+.|++++|++.++++.+++|+++..+..++
T Consensus 572 ~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 572 G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4 222333333444455669999999999987 56788888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++...|++++|...+++..+..+
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=170.16 Aligned_cols=446 Identities=13% Similarity=0.110 Sum_probs=284.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA 105 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (601)
-..|..-..+.|++.+|.+.-...-+ ..+.+....-.+-..+.+..+.+....--....+. .+.-..+|+.+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~--~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQ--EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhc--cCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 33455555666777777766655544 22333333333334444444555443332222222 2334456666666666
Q ss_pred hcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--hh-HHHHHHHHHhcCCHHHHHHH
Q 045105 106 RLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE--VS-CNTIIVGYCENGNVAEAREL 182 (601)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~li~~~~~~g~~~~a~~~ 182 (601)
..|+++.|...++.+++.. +.....|..+..++...|+.+.|.+.|.+...-|+ .. .+.+...+-..|++++|...
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 6677777777776666643 23445666666666666776666666665553322 22 12233334446667777666
Q ss_pred HHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 045105 183 FDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIALG 261 (601)
Q Consensus 183 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (601)
|.+..... +--...|+.|...+-..|+...|+..|++... +.|+ ...|-.+-..+...+.++.|...|......
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 66665543 22345666677777777777777777766654 4444 234666666666777777777666665543
Q ss_pred CCCc-hhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 045105 262 LQSD-TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS 340 (601)
Q Consensus 262 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 340 (601)
.|+ ..++..+...|-..|.++-|++.++ +.. .+.|+
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Yk----------ral-----------------------~~~P~--------- 318 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYK----------RAL-----------------------ELQPN--------- 318 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHH----------HHH-----------------------hcCCC---------
Confidence 232 3344445555556666666666555 222 01111
Q ss_pred HhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhH
Q 045105 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a 417 (601)
-+..|+.|..++-..|++.+|.+.+++.. .....+.+.|...|...|.+++|
T Consensus 319 -------------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 319 -------------------------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred -------------------------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 23445566666666666666666666554 23445777888888888888888
Q ss_pred HHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 418 IAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
..+|....+ +.|.- ...+.|...|-+.|++++|+..|++... +.|+ ...|+.+...|...|+...|+..+.++
T Consensus 374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 888888877 56664 4788888888899999999998876544 5666 457888888999999999999988776
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 495 PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 495 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
.+.|. ...++.|...|..+|++.+|++.|+.+..++|+.+.++..++.++.--.+|.+
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 55674 45678899999999999999999999999999999999999988765444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-19 Score=166.56 Aligned_cols=426 Identities=13% Similarity=0.111 Sum_probs=321.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcC
Q 045105 98 SSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENG 174 (601)
Q Consensus 98 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 174 (601)
..|..-..+.|++.+|++.....-... +.+....-.+-..+....+.++....-.... ..-..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344455566677777777665554432 2222233333344555555554443322222 224567888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH-HhcccCCHHHHHHH
Q 045105 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI-ACADMNSLRKGKEI 253 (601)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~ 253 (601)
++++|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++ +.|+......-+. .+...|++++|...
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988764 34677888899999999999999999988776 6676554433222 23346888888888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCC-H
Q 045105 254 HALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPD-I 332 (601)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~ 332 (601)
|.+..+... .=...|+.|...+-..|+...|++.|+ +.. .+.|+ .
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~----------eAv-----------------------kldP~f~ 252 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYE----------EAV-----------------------KLDPNFL 252 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHH----------Hhh-----------------------cCCCcch
Confidence 877765431 224567778888888999999988888 333 23343 3
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCC-hhhHHHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPD-LVSQNAMLTAYA 409 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~ll~~~~ 409 (601)
..|-.+-..+...+.+++|..-+....... +.....+..+...|...|.++-|++.+++.. +|+ ...|+.|..++-
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 356677777778888888888777665433 2245566677788999999999999999887 344 368999999999
Q ss_pred HcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 487 (601)
..|+..+|...|.+.+.. .|+. .+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|
T Consensus 332 d~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred hccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHH
Confidence 999999999999999984 5654 5888899999999999999999976444 4555 44788899999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 488 YEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 488 ~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+.-+++. .+.|+ ...++.+...|-..|+.+.|.+.+.++++.+|.-..++..|+.+|-.+|+..+|.+-++...+..+
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999887 67886 457888889999999999999999999999999999999999999999999999999999887765
Q ss_pred cc
Q 045105 566 HK 567 (601)
Q Consensus 566 ~~ 567 (601)
..
T Consensus 488 Df 489 (966)
T KOG4626|consen 488 DF 489 (966)
T ss_pred CC
Confidence 43
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-17 Score=173.74 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=125.1
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
.|..+...+...|++++|...|+.+. +.+...|..+...+...|++++|+..|++.++.. +.+...+..+..++.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 44445555556666666666665543 2344566666777777777777777777777642 2234556666677777
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HH-------HHHHHHHHHhcCCh
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS-VM-------WGALLGGCVSHGNL 516 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~-------~~~l~~~~~~~g~~ 516 (601)
.|++++|+..++..... .+.+...++.+..++...|++++|++.|++. ...|+. .. ++.....+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 77777777777554442 2334566777777777778888887777765 333321 11 11111223345788
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 517 EFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
++|.+.++++.+++|++..++..++.++.+.|++++|.+.+++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888877777888888888888888888888777544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=176.28 Aligned_cols=304 Identities=14% Similarity=0.094 Sum_probs=207.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC-ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHH
Q 045105 201 MISGYVDNSLYDEAFSMFRDLLMRDGIEP-TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSD---TFVGGALVEMY 276 (601)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 276 (601)
....+...|++++|+..|+++.. ..| +..++..+...+...|+++.|..+++.+...+..++ ...+..+...|
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLK---VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34455666777777777777765 223 334555566666666666666666666655432211 13445555556
Q ss_pred HhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHH
Q 045105 277 CRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356 (601)
Q Consensus 277 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 356 (601)
.+.|++++|..+|+ .+.
T Consensus 118 ~~~g~~~~A~~~~~----------~~l----------------------------------------------------- 134 (389)
T PRK11788 118 LKAGLLDRAEELFL----------QLV----------------------------------------------------- 134 (389)
T ss_pred HHCCCHHHHHHHHH----------HHH-----------------------------------------------------
Confidence 66666666655555 333
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC------hhhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 045105 357 YAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PD------LVSQNAMLTAYAMHGHGKEGIAHFRRILASG 428 (601)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 428 (601)
+.. +.+...+..++..+.+.|++++|...++.+.+ |+ ...+..+...+...|++++|...|+++.+..
T Consensus 135 ---~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 135 ---DEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred ---cCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 221 12333444455555555555555555554431 11 1134556777888899999999999988753
Q ss_pred CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 045105 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALL 507 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 507 (601)
+.+...+..+...+.+.|++++|.++++.+...+......+++.++.+|.+.|++++|...++++ ...|+...+..+.
T Consensus 211 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la 289 (389)
T PRK11788 211 -PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALA 289 (389)
T ss_pred -cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 33345777788889999999999999977666543333456788999999999999999999987 4467777778889
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH---cCCHHHHHHHHHHHhhcCCccCCCcceEEe
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY---AGRWSDLARTRQKMKDRRMHKSPGCSWIED 576 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 576 (601)
..+.+.|++++|...++++.+..|+++ .+..+...+.. .|+.+++..++++|.+++++++|.+....+
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~c 360 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNC 360 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCC
Confidence 999999999999999999999999655 55555555553 569999999999999999999999554333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-19 Score=172.82 Aligned_cols=297 Identities=11% Similarity=0.042 Sum_probs=233.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHh
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN---ARTLSSVLPACAR 106 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 106 (601)
...+...|++++|+..|+++.+ ..+.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999988 4556777899999999999999999999999887532222 2457778888899
Q ss_pred cCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--------chhHHHHHHHHHhcCCHHH
Q 045105 107 LQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN--------EVSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 107 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~ 178 (601)
.|+++.|..+|+.+.+.. +.+..++..++.++.+.|++++|.+.++.+...+ ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998753 4567788899999999999999999998876321 1134567777888999999
Q ss_pred HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT--SFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.. . .|+ ..++..+..++...|++++|...++.
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-Q--DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988764 33455777788899999999999999999876 2 333 35677888889999999999999998
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 257 AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
+.+.. |+...+..++..+.+.|++++|..+++ ++. ...|+..++.
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~----------~~l-----------------------~~~P~~~~~~ 319 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLR----------EQL-----------------------RRHPSLRGFH 319 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHH----------HHH-----------------------HhCcCHHHHH
Confidence 88764 555666888899999999999998888 444 2357777777
Q ss_pred HHHHHhcC---CCchhhHHHHHHHHHHhCCCCchh
Q 045105 337 IILSACSS---LATMERGKQVHAYAIRCGYDSDVH 368 (601)
Q Consensus 337 ~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 368 (601)
.++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77776654 458888999999999887777766
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-17 Score=161.16 Aligned_cols=551 Identities=13% Similarity=0.081 Sum_probs=356.9
Q ss_pred CCCCchhHHHHHhhCCC--CCcc--chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChH---
Q 045105 4 KCGSLDDAKKVFKMMPE--RDCV--SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDE--- 76 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~--- 76 (601)
..|++-.|..+|..+.. |... ..--+..++.+.|+.+.|+..|+...+ ..|-++.++-.|...-....+.+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHHHHHHHccchHHHH
Confidence 35788889999988653 2211 222334566788888888888888887 34445555555544444444443
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCCHHHHHHHHhh
Q 045105 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMS--NPFVVNGLVDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (601)
.+..++...-... .-++...+.|.+.+.-.|++..+..+...+......- -...|-.+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4455554443321 3355567777788888888888888888877654211 223466778888888888888888876
Q ss_pred cCCC--C--chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC----ChhHHHHHHHHHHHcCC
Q 045105 155 FSIK--N--EVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS----LYDEAFSMFRDLLMRDG 226 (601)
Q Consensus 155 ~~~~--~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~ 226 (601)
.... + +..+.-+...+.+.|+++.+...|+...... +.+..+...|...|...+ ..+.|..++.+....
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-- 409 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-- 409 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--
Confidence 6532 2 3345567788888888888888888887653 345556666666666654 456666666666541
Q ss_pred CCCChhhHHHHHHHhcccCCHHHHHHHHHH----HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 227 IEPTSFTFGSVLIACADMNSLRKGKEIHAL----AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 227 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
.+.|...|..+...+. .++...+..++.. +...+..+.+...|.+...+...|++..|...|...... ....+
T Consensus 410 ~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~--~~~~~ 486 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK--LLEVA 486 (1018)
T ss_pred ccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh--hhhhc
Confidence 2334445544444443 3344333554443 345566677788888888888888888888887754332 11111
Q ss_pred h-hcCCCCCh-hhhhHHHHHHHHHhC-----------CCCCCH-hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchh
Q 045105 303 K-EDGFEPNV-YTWNAMQLFSEMLSL-----------DLTPDI-YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVH 368 (601)
Q Consensus 303 ~-~~g~~~~~-~~~~~~~~~~~~~~~-----------~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 368 (601)
- +.|-.++. ..||.-.+.+.+... ...|.- ..|..+.......+...+|...++...... ..++.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 1 11111221 234432333322111 012221 122222222223356677777777766543 23455
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHH------------cCChhhHHHHHHHHHHCCCCc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS-----TPDLVSQNAMLTAYAM------------HGHGKEGIAHFRRILASGFRP 431 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~m~~~~~~p 431 (601)
.+..+...+.+...+..|..-|+.+. .+|..+.-.|.+.|.+ .+..++|+++|.+.+... +-
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 55556667888777877777554443 2455555555554432 245678999999988863 44
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI----PMAPDSVMWGALL 507 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~ 507 (601)
|.+.-+.+.-.++..|++..|..+|..+.+... -...+|-.+..+|...|++..|+++|+.. .-..+..+...|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 667777788888999999999999988777653 34567888999999999999999999865 2356788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH-------------------cCCHHHHHHHHHHHhhcCCc
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY-------------------AGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~l~~~~~~~~~ 566 (601)
.++...|++.+|.+.+..+..+.|.++...+.++-+..+ .+..+.|.++|.+|.+-+.+
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999888887766653 34677888888888776654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-17 Score=170.79 Aligned_cols=404 Identities=11% Similarity=0.069 Sum_probs=255.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHH
Q 045105 127 SNPFVVNGLVDVYRRCGDMLSALKIFSKFSI-K--NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS 203 (601)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (601)
.+.....-.+.+....|+.++|++++.+... . +...+..+...+.+.|++++|.++|++..... +.+...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3344444455555556666666666655542 1 22235555666666666666666666655442 223444555556
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 045105 204 GYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (601)
.+...|++++|+..+++.... .|+...+..+..++...|+.+.|...++.+.+.. +.+...+..+..++...|..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG---APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 666666666666666666542 2222225455555666666666666666666653 223444445666666677777
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHh-----cCCCch---hhHHHHH
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSAC-----SSLATM---ERGKQVH 355 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~~~~---~~a~~~~ 355 (601)
.|+..++ .... .|+.. ..+ ..+ ....++... ...+++ ++|...+
T Consensus 168 ~Al~~l~----------~~~~---~p~~~--~~l-----------~~~--~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 168 PALGAID----------DANL---TPAEK--RDL-----------EAD--AAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHH----------hCCC---CHHHH--HHH-----------HHH--HHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 7776666 3321 11100 000 000 001111111 122233 6677788
Q ss_pred HHHHHh-CCCCchh-HH-hH---HHHHHHhcCChHHHHHHHhcCCCCC---hh-hHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 356 AYAIRC-GYDSDVH-IG-TA---LVDMYAKCGSLKHARLAYKRISTPD---LV-SQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 356 ~~~~~~-~~~~~~~-~~-~~---l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
+.+.+. ...|+.. .+ .. .+..+...|++++|+..|+.+.+.+ +. ....+...|...|++++|+..|+++.
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 877754 2223221 11 11 1234456799999999999988422 11 12225678999999999999999987
Q ss_pred HCCCCcc-----HHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-----------CcC---chHHHHHHHHhhhcCChHH
Q 045105 426 ASGFRPD-----HISFLSALSACVHAGSIKTGSEFFDLMAYYDV-----------KPS---LKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 426 ~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~ 486 (601)
... |. ......+..++...|++++|..+++.+..... .|+ ...+..+...+...|+.++
T Consensus 300 ~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 643 32 23456667788999999999999977665421 122 1234567778889999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
|++.++++ ...| +...+..+...+...|++++|++.++++.+.+|+++..+..++.++.+.|++++|..+++++.+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999987 3345 677888899999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 045105 565 M 565 (601)
Q Consensus 565 ~ 565 (601)
+
T Consensus 458 P 458 (765)
T PRK10049 458 P 458 (765)
T ss_pred C
Confidence 3
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-17 Score=168.37 Aligned_cols=331 Identities=9% Similarity=0.019 Sum_probs=228.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHH
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIA 240 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~ 240 (601)
....++..+.+.|++++|..+++....... -+...+..++.+....|++++|...++++.. ..|+ ...+..+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~---~~P~~~~a~~~la~~ 119 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLA---VNVCQPEDVLLVASV 119 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHH
Confidence 345566667777777777777777766542 2333444455666667777777777777765 3333 3345555566
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHH
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLF 320 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (601)
+...|+.+.|...++.+.... +.+...+..+..++...|++++|...+. .+...
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~----------~~~~~--------------- 173 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR----------TQAQE--------------- 173 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH----------HHHHh---------------
Confidence 677777777777777777653 3345566777777888888888877776 33211
Q ss_pred HHHHhCCCCCC-HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CC
Q 045105 321 SEMLSLDLTPD-IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TP 396 (601)
Q Consensus 321 ~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~ 396 (601)
.|+ ...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++.+. ..
T Consensus 174 --------~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 174 --------VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred --------CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 111 1112122 2356678888888888777665433444444555677888899999888888766 34
Q ss_pred ChhhHHHHHHHHHHcCChhh----HHHHHHHHHHCCCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHH
Q 045105 397 DLVSQNAMLTAYAMHGHGKE----GIAHFRRILASGFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHY 471 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 471 (601)
+...+..+...|...|++++ |...|++..+. .|+ ...+..+...+...|++++|...++...... +.+...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 55677778888889998885 78899998885 454 4578888889999999999999997666543 2335567
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMW-GALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
..+..+|.+.|++++|+..++++ ...|+...+ ..+..++...|+.++|...++++.+..|++.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 77888899999999999999887 345655443 3345678889999999999999999988754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-16 Score=158.84 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=92.9
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-hhHHHH--HHHHHhcCCHHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE-VSCNTI--IVGYCENGNVAEARE 181 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~g~~~~a~~ 181 (601)
.+.|+++.|...|++..+....-...++ .++..+...|+.++|+..+++...|+. ..+..+ ...+...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555555555544211111222 555555555666666666665554422 222222 334555566666666
Q ss_pred HHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 045105 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALG 261 (601)
Q Consensus 182 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (601)
+|+++.+.. +-+...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|.+.++++.+..
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 666665553 22344445555666666666666666666543 34444444333333333444444666666666553
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 262 LQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
+.+...+..++.++.+.|-...|.++..
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3345555666666666666666655544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-16 Score=165.00 Aligned_cols=430 Identities=13% Similarity=-0.006 Sum_probs=255.9
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4556777888999999999999998863 4677889999999999999999999999988753 33456788888899
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
...|++++|...+......+...+.. ...++..+........+...++.-. ++...+..+.. +......+....-+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 99999999998887666543222222 2222222212112233444443322 22233333322 222222222222222
Q ss_pred HHHhcCCCCC-eeehHHHHHHH---HhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 185 QMEHLGVQRG-IISWNSMISGY---VDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 185 ~m~~~g~~~~-~~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
.-... .+. ...+..+...+ ...+++++|++.|+.........|+ ...+..+...+...|++++|...++....
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 111 11122121111 2346788999999888763323343 34566666677788999999999988877
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHH
Q 045105 260 LGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIIL 339 (601)
Q Consensus 260 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 339 (601)
.. +.....|..+..++...|++++|...|+ ...+. .|
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~----------~al~~-----------------------~p--------- 396 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFD----------KALKL-----------------------NS--------- 396 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH----------HHHHh-----------------------CC---------
Confidence 63 2234566777777888888888887777 33210 11
Q ss_pred HHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhh
Q 045105 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKE 416 (601)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~ 416 (601)
.++.++..+...+...|++++|...|++.. +.+...+..+...+.+.|++++
T Consensus 397 -------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 397 -------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 123334444445555555555555555543 2233445556666667777777
Q ss_pred HHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch------HHHHHHHHhhhcCChHHHHHH
Q 045105 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK------HYTCMVDLLSRAGELGEAYEF 490 (601)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~ 490 (601)
|+..|++.++.. +.+...+..+...+...|++++|...|+.........+.. .++.....+...|++++|.++
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777766541 2234566666677777777777777775544432111111 111112223345788888888
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 491 IKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 491 ~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+++. ...| +...+..+...+...|++++|.+.++++.++.+.
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 8775 4445 3446777777888888888888888888887664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-16 Score=138.69 Aligned_cols=429 Identities=15% Similarity=0.141 Sum_probs=301.6
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CcchH-HHHHHHHHHhcCCCchHHHHHH
Q 045105 59 LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ--KLSLG-KEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 59 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~g~~~~~~~~~~l 135 (601)
+.+=|.|+.. ..+|....+.-+|+.|++.|+..+...-..|++..+-.+ ++.-+ .+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4556666654 567889999999999999999988888777777654333 33322 22344444444 2222333
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 136 VDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
+.|+..+ ++-+...++..+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-... .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3454443 666677788899999999999999999999999999988778999999999976543322 6
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHhh
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK----GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVA-AQMAFD 290 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~ 290 (601)
+++.+|.. ..+.||..|||.++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.
T Consensus 259 ~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 259 KLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 78889988 8899999999999999999998765 46788899999999999999999999999888755 333333
Q ss_pred hHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHh----CCCCc
Q 045105 291 EIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC----GYDSD 366 (601)
Q Consensus 291 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 366 (601)
++.+.+...-+.| ..+.|...|...+..|.+..+.+.|.++...+... -+.|+
T Consensus 338 ------dI~N~ltGK~fkp-----------------~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~ 394 (625)
T KOG4422|consen 338 ------DIQNSLTGKTFKP-----------------ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD 394 (625)
T ss_pred ------HHHHhhccCcccC-----------------CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH
Confidence 2222333222222 12235667888999999999999999998776533 12333
Q ss_pred ---hhHHhHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHH
Q 045105 367 ---VHIGTALVDMYAKCGSLKHARLAYKRIST----PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSA 439 (601)
Q Consensus 367 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (601)
..-|..+..+.+.....+.-...|+.+.. |+..+...++++....|+++-.-++|.+++..|-.-+...-.-+
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei 474 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI 474 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 23455677788888889999999998873 77888888899998999999999999998887744444333333
Q ss_pred HHHHhccC--------------------chHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC----
Q 045105 440 LSACVHAG--------------------SIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI---- 494 (601)
Q Consensus 440 ~~~~~~~g--------------------~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 494 (601)
+..+++.+ ++.++.+.- ..+.+.. ......+.+.-.+.+.|+.++|.++|.-.
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 33333322 111111111 2223333 33445677777788889999888887554
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045105 495 ---PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530 (601)
Q Consensus 495 ---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 530 (601)
+..|......-++..-...++.-.|..+++-+.+.+
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 223433444456666677788888888888886653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-15 Score=158.29 Aligned_cols=450 Identities=12% Similarity=0.065 Sum_probs=289.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNL-VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
+-...+.|+++.|++.|++..+. .+-+. ..+ -++..+...|+.++|+..+++.... ..........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 33456778888888888888763 22222 233 7777778888888888888888611 1122223333345677778
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch--hHHHHHHHHHhcCCHHHHHHHHHHH
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV--SCNTIIVGYCENGNVAEARELFDQM 186 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m 186 (601)
++++|.++++.+.+.. +.+...+..++..+...++.++|++.++++...+.. .+..++..+...++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888888888775 334566667778888888888888888888754333 3333333333355555588888888
Q ss_pred HhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCch
Q 045105 187 EHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT 266 (601)
Q Consensus 187 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (601)
.... +.+...+..++.++.+.|-...|+++..+-.. -. +......+ . .+.+.+ .++.+..++.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f--~~~~~~~l-~-------~~~~a~----~vr~a~~~~~ 258 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LV--SAEHYRQL-E-------RDAAAE----QVRMAVLPTR 258 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--cc--CHHHHHHH-H-------HHHHHH----HHhhcccccc
Confidence 7764 34566667777888888888888777654211 01 11111111 0 001111 1111111100
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCC-HhHHHHHHHHhcCC
Q 045105 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPD-IYTVGIILSACSSL 345 (601)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 345 (601)
. ...++..+.+.+..++. ++..+. -.|.. .|. .....-.+-++...
T Consensus 259 ~----------~~~r~~~~d~ala~~~~---l~~~~~---~~p~~-----------------~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 259 S----------ETERFDIADKALADYQN---LLTRWG---KDPEA-----------------QADYQRARIDRLGALLVR 305 (822)
T ss_pred c----------chhhHHHHHHHHHHHHH---HHhhcc---CCCcc-----------------chHHHHHHHHHHHHHHHh
Confidence 0 01122222222221111 111111 00100 001 11223445677888
Q ss_pred CchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCC---------ChhhHHHHHHHHHHcCChhh
Q 045105 346 ATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP---------DLVSQNAMLTAYAMHGHGKE 416 (601)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~ 416 (601)
++..++...++.+...+.+....+-..+.++|...+++++|..+++.+..+ +......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 999999999999999887766678889999999999999999999987531 22234678889999999999
Q ss_pred HHHHHHHHHHCCC-----------Ccc--HH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC
Q 045105 417 GIAHFRRILASGF-----------RPD--HI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG 482 (601)
Q Consensus 417 a~~~~~~m~~~~~-----------~p~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 482 (601)
|..+++++.+.-. .|| -. .+..++..+...|++.+|++.++.+... -+-|......+.+.+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 9999999987311 122 22 3444567778899999999999776443 3667778888889999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 483 ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
.+.+|++.++.. ...| +..+......++...|++++|..+.+.+.+..|+++.
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 999999999776 3456 4566667777788889999999999999999997773
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-16 Score=163.38 Aligned_cols=332 Identities=9% Similarity=-0.003 Sum_probs=262.6
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045105 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEM 275 (601)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 275 (601)
.-...++..+.+.|++++|+.+++...... +-+......+..+....|+++.|...++.+.... +.+...+..+...
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344567788899999999999999988622 2233344455566677999999999999999875 4456778888999
Q ss_pred HHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC-CHhHHHHHHHHhcCCCchhhHHHH
Q 045105 276 YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATMERGKQV 354 (601)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~ 354 (601)
+...|++++|...++ +.. ...| +...+..+...+...|+.++|...
T Consensus 120 l~~~g~~~~Ai~~l~----------~Al-----------------------~l~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 120 LLKSKQYATVADLAE----------QAW-----------------------LAFSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred HHHcCCHHHHHHHHH----------HHH-----------------------HhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998 444 1233 345677788899999999999999
Q ss_pred HHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCC
Q 045105 355 HAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP----DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFR 430 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 430 (601)
+..+......+. ..+..+ ..+.+.|++++|...++.+.+. +...+..+..++...|++++|+..+++..+.. +
T Consensus 167 ~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 167 ARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred HHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 998876654333 333333 3478899999999999887632 23344555678899999999999999999864 3
Q ss_pred ccHHhHHHHHHHHhccCchHH----HHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 045105 431 PDHISFLSALSACVHAGSIKT----GSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWG 504 (601)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 504 (601)
.+...+..+...+...|++++ |...++...... +.+...+..+...+.+.|++++|+..+++. ...| +...+.
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345677888899999999986 788887666543 335668889999999999999999999987 3456 456677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
.+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|...+++..+..+..
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 788889999999999999999999999887777778889999999999999999988776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-15 Score=136.24 Aligned_cols=423 Identities=15% Similarity=0.143 Sum_probs=255.9
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHh--hcCC-hHHHHHHHHHHHHcC-----------
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFT--QNGY-DEEAIGMLFRMQAEG----------- 89 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~~~-~~~a~~~~~~m~~~~----------- 89 (601)
.+=|.|+..- .+|.+.++.-+++.|++. +.+.+...-..|.+.-+ .+.+ +-.-++.|-.|...|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3445555443 346667777777777775 44444444444433222 1111 111222333332221
Q ss_pred --------CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch
Q 045105 90 --------LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV 161 (601)
Q Consensus 90 --------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (601)
.+-+..||.++|.++++.-..+.|.+++++......+.+..+||.+|.+-.-..+-+-.-+....-..||..
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchH
Confidence 234567888888888888888888888888877777888888888887765544433333333333467888
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhH-HHHHHHHHHHc---CCCCC----
Q 045105 162 SCNTIIVGYCENGNVAE----ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE-AFSMFRDLLMR---DGIEP---- 229 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~---~~~~p---- 229 (601)
|+|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..+|..+++.+++.+ +..++.++..+ ...+|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 88888888888887764 56788999999999999999999999999988755 44455554421 22222
Q ss_pred ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 230 TSFTFGSVLIACADMNSLRKGKEIHALAIALG----LQSD---TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 230 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
|...|...+..|.+..+.+.|.++........ +.|+ ..-|..+..+.|+....+.-...++
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~------------ 422 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE------------ 422 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45567888888999999999999887765432 2222 1233445555555555554444444
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
.|...-+-|...+...++++....+.++-..++|..++..|.........-++..+++..-
T Consensus 423 -------------------~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~ 483 (625)
T KOG4422|consen 423 -------------------DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL 483 (625)
T ss_pred -------------------HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 4444456788888889999999999999999999999988865444443333333333220
Q ss_pred hHHHHHHHhcCCCCChh---hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 383 LKHARLAYKRISTPDLV---SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
.|+.. -+.....-++ ..-.+.....-.+|.+..+.| ...+.+.--+.+.|..++|.+++..+
T Consensus 484 ------------hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 484 ------------HPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred ------------CCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 12111 1111111111 111122222334455544443 34444555567788888888888665
Q ss_pred HhcC-CCcCchHHH---HHHHHhhhcCChHHHHHHHHhC
Q 045105 460 AYYD-VKPSLKHYT---CMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 460 ~~~~-~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
.+.+ --|-....| -+++...+..+...|...++-+
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4333 223333444 4444555667777777777766
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-16 Score=163.98 Aligned_cols=420 Identities=12% Similarity=0.004 Sum_probs=278.0
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 135 (601)
+.+...-.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444444555667777888899988888887632 4455568888888888888888888888887763 4445666777
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChh
Q 045105 136 VDVYRRCGDMLSALKIFSKFSI--K-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYD 212 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 212 (601)
..++...|+.++|...+++... | +.. +..+...+...|+.++|+..++++.... +.+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 7788888888888888877652 2 444 6677777777888888888888877664 224444555666777777777
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH---HHHHHHh
Q 045105 213 EAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDL---VAAQMAF 289 (601)
Q Consensus 213 ~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~ 289 (601)
.|+..++.... .|+... -+. ...+..... ..+.......+++ ++|+..+
T Consensus 168 ~Al~~l~~~~~----~p~~~~---~l~-------~~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 168 PALGAIDDANL----TPAEKR---DLE-------ADAAAELVR--------------LSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHhCCC----CHHHHH---HHH-------HHHHHHHHH--------------hhcccccChhHHHHHHHHHHHHH
Confidence 77777765432 233100 000 000000000 0000001111222 3444444
Q ss_pred hhHHHHHHHHhhchhc-CCCCChhhhhHHHHHHHHHhCCCCCCHh-HHHHHHHHhcCCCchhhHHHHHHHHHHhCCC-Cc
Q 045105 290 DEIENIENLLGKMKED-GFEPNVYTWNAMQLFSEMLSLDLTPDIY-TVGIILSACSSLATMERGKQVHAYAIRCGYD-SD 366 (601)
Q Consensus 290 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 366 (601)
+ .+.+. ...|+. .|... .....+.++...++.++|...|+.+.+.+.+ |+
T Consensus 220 ~----------~ll~~~~~~p~~-----------------~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~ 272 (765)
T PRK10049 220 D----------ALEALWHDNPDA-----------------TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP 272 (765)
T ss_pred H----------HHHhhcccCCcc-----------------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH
Confidence 4 22211 001110 11000 1111133445678999999999999887632 32
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC-----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCC-----------
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST--PD-----LVSQNAMLTAYAMHGHGKEGIAHFRRILASG----------- 428 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----------- 428 (601)
- ....+...|...|++++|...|+.+.+ |. ......+..++...|++++|..+++++.+..
T Consensus 273 ~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~ 351 (765)
T PRK10049 273 W-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT 351 (765)
T ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC
Confidence 2 222357789999999999999998763 22 2345566778899999999999999998752
Q ss_pred CCccH---HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 045105 429 FRPDH---ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMW 503 (601)
Q Consensus 429 ~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~ 503 (601)
-.|+. ..+..+...+...|++++|+.+++.+... .+.+...+..+...+...|++++|++.++++ ...|+ ...+
T Consensus 352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 11332 24456677888999999999999776554 3555778889999999999999999999988 45675 5666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
......+...|++++|+..++.+++..|+++.+
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777778889999999999999999999987743
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-15 Score=146.10 Aligned_cols=539 Identities=13% Similarity=0.090 Sum_probs=344.2
Q ss_pred chhHHHHHhhCCCCCccc-hHHHHHHHH--hcCChHHHHHHHHHhhhc-CCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 8 LDDAKKVFKMMPERDCVS-WNSVVTACA--ANGLVLEALECLERMSSL-DNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~-~~~ll~~~~--~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
++.|...|..+.+.++.- ...|..++. ..+++..|+.+|...... +..+||+. -.+..++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 488888888888654432 333444443 357999999999986543 13344443 233466778999999999999
Q ss_pred HHHHcCCCC-CHhhHHHHHHHHHhcCC---cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 045105 84 RMQAEGLEP-NARTLSSVLPACARLQK---LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN 159 (601)
Q Consensus 84 ~m~~~~~~p-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (601)
+..+. .| ++.++..|...-....+ +..+...+...-... .-++.+.+.|.+.|.-.|++..+..+...+...+
T Consensus 224 ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 224 RALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99875 34 33333333322222233 344455554444433 5677888999999999999999999988776432
Q ss_pred ------chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-h
Q 045105 160 ------EVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-F 232 (601)
Q Consensus 160 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~ 232 (601)
..+|-.+.++|-..|++++|...|-+..+..-...+..+-.+.+.+.+.|+.+.+...|+.+.. ..||. .
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~e 377 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNYE 377 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchHH
Confidence 3458889999999999999999998887664222234455678999999999999999999876 34544 4
Q ss_pred hHHHHHHHhcccC----CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCC
Q 045105 233 TFGSVLIACADMN----SLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFE 308 (601)
Q Consensus 233 ~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~ 308 (601)
|..++-..|...+ ..+.|..++....+.- +.|...|-.+...+-.. +...++..+.. +.. .+...+-.
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~---A~d---~L~~~~~~ 449 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGN---ALD---ILESKGKQ 449 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHH---HHH---HHHHcCCC
Confidence 5555544455443 4566666666665554 45666777666666543 44444555552 111 22222212
Q ss_pred CChhhhhH--------------HHHHHHHHhC---CCCCCHh------HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC
Q 045105 309 PNVYTWNA--------------MQLFSEMLSL---DLTPDIY------TVGIILSACSSLATMERGKQVHAYAIRCGYDS 365 (601)
Q Consensus 309 ~~~~~~~~--------------~~~~~~~~~~---~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (601)
+.....|. ...|...... ...+|.. +--.+....-..++.+.|.+.|..+.+....
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~- 528 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG- 528 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-
Confidence 22222221 2333322222 1222321 1122333444556677777777776664321
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHHhHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALS 441 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~ 441 (601)
-+..|..+..+....+...+|...++.+. +.++..+.-+...+.+...+..|..-|....+.- ..+|.++...|.+
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 11222222222222355667777777665 3555566666667777777888877776665532 2356666666666
Q ss_pred HHhc------------cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 045105 442 ACVH------------AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--MAPDSVMWGALL 507 (601)
Q Consensus 442 ~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 507 (601)
.|.. .+..++|+++|..+.+.. +-|...-|-+.-.++..|++.+|..+|.+.. ......+|-.+.
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 5532 234567888886655543 4566677788888999999999999998883 223567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 508 GGCVSHGNLEFGQIAADRLIELE-P-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|...|++..|+++|+...... + +++.+...|+.++.+.|++.+|.+.+.......
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988763 3 367888899999999999999999987665544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-13 Score=135.15 Aligned_cols=544 Identities=11% Similarity=0.033 Sum_probs=345.5
Q ss_pred CCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
.|++++|++++.++.+ .+..+|-.|...|-..|+.+++...+--.-. ..|.|...|..+.....+.|++++|.-+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3999999999999986 3556899999999999999999988766554 5667789999999999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH----HHHHHHhcCCHHHHHHHHhhcCC
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG----LVDVYRRCGDMLSALKIFSKFSI 157 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~ 157 (601)
|.+..+.. +++...+-.-...|-+.|+...|..-|.++.....+.|..-+.. .++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998873 44444444455667888999999999888887654334333333 34555666777888887776653
Q ss_pred --C---CchhHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------------------------
Q 045105 158 --K---NEVSCNTIIVGYCENGNVAEARELFDQMEH-------------------------------------------- 188 (601)
Q Consensus 158 --~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------------------------------------- 188 (601)
. +...++.++..+.+...++.|......+..
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1 344566677777777666666666555544
Q ss_pred -----------------cCC--CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHH
Q 045105 189 -----------------LGV--QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK 249 (601)
Q Consensus 189 -----------------~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 249 (601)
..+ .-+...|.-+..++.+.|++.+|+.+|..+.. ...--+...|-.+..++...|..+.
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHhhHHH
Confidence 110 01233455566777788888888888888776 3333345677777888888888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH-------------
Q 045105 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA------------- 316 (601)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------- 316 (601)
|.+.|+.+.... +.+..+...|...+-+.|+.++|.+.++ .+. .||...-.+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~----------~~~----~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE----------QII----NPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh----------ccc----CCCccchhhccccHHHHHHHHH
Confidence 888888887664 3445566677778888888888888887 444 344221110
Q ss_pred -----------------HHHHH---------------HHHh-C--CCCCCHhHHHHHHHHhcCCCchhhHHHHHHH----
Q 045105 317 -----------------MQLFS---------------EMLS-L--DLTPDIYTVGIILSACSSLATMERGKQVHAY---- 357 (601)
Q Consensus 317 -----------------~~~~~---------------~~~~-~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~---- 357 (601)
..++. ++.. . +.+-...+....+.+-.+.++......-...
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 00000 0000 0 1122223333444444444443322222211
Q ss_pred --HHHhCCCCch--hHHhHHHHHHHhcCChHHHHHHHhcCCC------CCh---hhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 358 --AIRCGYDSDV--HIGTALVDMYAKCGSLKHARLAYKRIST------PDL---VSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 358 --~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
....++..+. ..+.-++..+++.+++++|..+...+.. ++. ..-...+.+.+..+++..|...++.|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1112332222 3445677788899999999998887763 211 12344566777889999999999998
Q ss_pred HHC-C--CCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 045105 425 LAS-G--FRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD 499 (601)
Q Consensus 425 ~~~-~--~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 499 (601)
... + ..|.. ..|+..++.+.+.++-.--.+.+.........-+..........+..++.+..|+..+-++ ...|+
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd 772 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD 772 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC
Confidence 875 1 12332 2455455555555544333333322111111111222222233455778888888776555 34566
Q ss_pred HHHHHHHHHH-HH----------hcCChhHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 500 SVMWGALLGG-CV----------SHGNLEFGQIAADRLIELEPN--NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 500 ~~~~~~l~~~-~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
.+..+.++.. +. ++-.+-.+...+.+..++... --++++.++.+|...|-..-|..++++..+-.+.
T Consensus 773 ~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 5444433322 11 222345667777777777543 4579999999999999999999999999877654
Q ss_pred c
Q 045105 567 K 567 (601)
Q Consensus 567 ~ 567 (601)
+
T Consensus 853 ~ 853 (895)
T KOG2076|consen 853 D 853 (895)
T ss_pred c
Confidence 4
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-15 Score=133.44 Aligned_cols=466 Identities=10% Similarity=0.033 Sum_probs=287.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH------hhHHHHHH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA------RTLSSVLP 102 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~ 102 (601)
|..-|.......+|+..++-+.+...++-.-..--.+...+.+.+++.+|++.|+-.... .|+. ...+.+--
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigv 284 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCe
Confidence 334455566777788888776665333222223334556677777888888888766554 2322 22333334
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCch--------hHHHHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI----KNEV--------SCNTIIVGY 170 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--------~~~~li~~~ 170 (601)
.+.+.|.++.|..-|+...+. .|+..+--.|+-++.--|+.++..+.|.++.. +|.. .-..++.--
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 466778888888888877765 35655444455555566777777777776651 1111 011111111
Q ss_pred HhcCC-----------HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH-HHHH
Q 045105 171 CENGN-----------VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF-GSVL 238 (601)
Q Consensus 171 ~~~g~-----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll 238 (601)
.+..+ .++++-.-..+...-+.|+.. +- .+-.++.++.- ...|-.... ..-.
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---~g---------~dwcle~lk~s----~~~~la~dlei~ka 426 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---AG---------CDWCLESLKAS----QHAELAIDLEINKA 426 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---cc---------cHHHHHHHHHh----hhhhhhhhhhhhHH
Confidence 11111 111111111111111111110 00 11111111110 000000000 0011
Q ss_pred HHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 239 IACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR--YQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
.-+.+.|+++.|.++++-..+..-+.....-+.|-..+.- -.++.+|.+.-+ ... +..-|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad----------~al------n~dryn- 489 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD----------IAL------NIDRYN- 489 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH----------HHh------cccccC-
Confidence 2355677888888877777665544433333333333222 224444444333 111 111111
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-- 394 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 394 (601)
....+.--+.....|++++|.+.+.+.....-......||. .-.+...|++++|.++|-++.
T Consensus 490 ---------------~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 490 ---------------AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred ---------------HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH
Confidence 11111112233457899999999999987765555555553 334677899999999997765
Q ss_pred -CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHH
Q 045105 395 -TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC 473 (601)
Q Consensus 395 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (601)
..+......+...|-...+..+|++++-+.... ++.|+..+..|...|-+.|+-.+|.+.+-. .-+-++-+..+...
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yd-syryfp~nie~iew 631 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYD-SYRYFPCNIETIEW 631 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhh-cccccCcchHHHHH
Confidence 567777778888899999999999999888764 455677889999999999999999998843 23446778889888
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 474 MVDLLSRAGELGEAYEFIKKIP-MAPDSVMWGALLGGCV-SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
|..-|....-+++|+.+|++.. +.|+..-|..++..|. +.|++.+|.+.++......|.+...+..|+.++...|.
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999984 6899999999998874 67999999999999999999999999999999988774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-12 Score=120.01 Aligned_cols=490 Identities=11% Similarity=0.027 Sum_probs=360.4
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHH
Q 045105 35 ANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGK 114 (601)
Q Consensus 35 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 114 (601)
.....+.|+-++....+ ..+.+...|. +|.+..-++.|..+++..++. ++.+...|.+....--..|+.+...
T Consensus 388 elE~~~darilL~rAve--ccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVE--CCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHH--hccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 34445556666666665 4445555444 444555667777777777765 5666677776666666677777777
Q ss_pred HHHHHH----HHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCCHHHHHHHHH
Q 045105 115 EFHGYI----TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI------KNEVSCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 115 ~~~~~~----~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
++...- ...|+..+...|..=...+-..|..--+..+...... .-..||..-...|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 665443 3567777777777766677777766666666655541 123467777778888888888888888
Q ss_pred HHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Q 045105 185 QMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQS 264 (601)
Q Consensus 185 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (601)
...+.- +-+...|......--..|..++...+|++... .++-....+.....-.-..|++..|..++..+.+... .
T Consensus 541 ~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-n 616 (913)
T KOG0495|consen 541 HALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-N 616 (913)
T ss_pred HHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-C
Confidence 877653 34556677666666677888888888888875 2333344454455556777999999999988887763 3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC
Q 045105 265 DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS 344 (601)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 344 (601)
+..+|.+-+..-.....++.|..+|. +.. +..|+...|.--++.---
T Consensus 617 seeiwlaavKle~en~e~eraR~lla----------kar-----------------------~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLA----------KAR-----------------------SISGTERVWMKSANLERY 663 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHH----------HHh-----------------------ccCCcchhhHHHhHHHHH
Confidence 77888888888888999999988888 333 234555555555555556
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHF 421 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 421 (601)
.++.++|.++++...+.- +.-...|..+...+.+.++++.|...|..-.+ ..+..|-.|...--+.|....|..++
T Consensus 664 ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 688899999998877653 33456777888889999999999998876653 44557777777777889999999999
Q ss_pred HHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH
Q 045105 422 RRILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS 500 (601)
Q Consensus 422 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 500 (601)
++.+-.+ +-+...|...|+.=.+.|..+.|..+. +.+++ ++.+...|..-|....+.++-....+.+++- +-|+
T Consensus 743 drarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dp 817 (913)
T KOG0495|consen 743 DRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDP 817 (913)
T ss_pred HHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCc
Confidence 9988874 556678999999999999999999998 55444 4566778888888888888877888888775 3566
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEe
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIED 576 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 576 (601)
.+.-++...+....++++|.+.|+++...+|++-.++.-+...+.+.|.-++-.++++...... |.-|..|..+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 6677777888888899999999999999999988899999999999999999999999888765 4556666544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-12 Score=123.18 Aligned_cols=328 Identities=12% Similarity=0.100 Sum_probs=248.4
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcch
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSL 112 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (601)
+...|+.++|.+++.+..+ ..+.+...|..|...|-..|+.+++...+-..-... +-|...|..+.......|++++
T Consensus 149 lfarg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3345999999999999999 577889999999999999999999998876665442 4456788888888999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc----h----hHHHHHHHHHhcCCHHHHHHHHH
Q 045105 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE----V----SCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 113 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
|.-.|...++.. +++...+-.-...|-+.|+...|.+.|.++..-++ . .-..+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999986 55666666777889999999999999888763322 2 23345667777888899999988
Q ss_pred HHHhc-CCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHc--------------------------CCCCCChhhHHHH
Q 045105 185 QMEHL-GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR--------------------------DGIEPTSFTFGSV 237 (601)
Q Consensus 185 ~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~p~~~~~~~l 237 (601)
..... +-..+...++.++..+.+...++.+......+... .++.++... -.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 87752 22456678899999999999999999988887650 111122222 123
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh
Q 045105 238 LIACADMNSLRKGKEIHALAIALGL--QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315 (601)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (601)
.-++......+....+........+ .-+...|.-+..+|...|++..|..+|. .+...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~----------~i~~~---------- 443 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS----------PITNR---------- 443 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH----------HHhcC----------
Confidence 3345556666667777777777774 4456788999999999999999999988 44421
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC
Q 045105 316 AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST 395 (601)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (601)
..--+...|-.+..++...|..+.|.+.++..+.... -+...-..|...+.+.|+.++|.+.++.+..
T Consensus 444 -----------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 444 -----------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred -----------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 1112345677788888899999999999998887542 2344445677888899999999999998775
Q ss_pred CC
Q 045105 396 PD 397 (601)
Q Consensus 396 ~~ 397 (601)
||
T Consensus 512 ~D 513 (895)
T KOG2076|consen 512 PD 513 (895)
T ss_pred CC
Confidence 54
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-12 Score=128.38 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=127.8
Q ss_pred CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 045105 20 ERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSS 99 (601)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 99 (601)
.||..+|..++.-||..|+.+.|- +|..|.-. ..+.+...++.++.+....++.+.+. .|...||..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 588899999999999999999998 88877664 33444555555555555555544443 455555556
Q ss_pred HHHHHHhcCCcchHHHHHHHHH-------HhcC-----------------CCchHHHHHHHHHHHhcCCHHHHHHHH---
Q 045105 100 VLPACARLQKLSLGKEFHGYIT-------RNGF-----------------MSNPFVVNGLVDVYRRCGDMLSALKIF--- 152 (601)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~-------~~g~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~--- 152 (601)
|+.+|...||+.....+-+.|. ..|+ -||.. ..+....-.|-++.+++++
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 6666655555433111111111 1111 01111 1111112222333333333
Q ss_pred ------------------------------hhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHH
Q 045105 153 ------------------------------SKFSI-KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSM 201 (601)
Q Consensus 153 ------------------------------~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (601)
+...+ ++..+|.+++.+-.-+|+++.|..++.+|++.|++.+.+-|-.|
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 22222 57777888888888888888888888888888888888777777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCC
Q 045105 202 ISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNS 246 (601)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 246 (601)
+-+ .+...-+..+++-|.. .|+.|+..|+...+-.+.+.|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 655 6666667777766666 8888888888777776666544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-12 Score=119.20 Aligned_cols=374 Identities=13% Similarity=0.101 Sum_probs=253.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHH
Q 045105 163 CNTIIVGYCENGNVAEARELFDQMEHLGVQRG-IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-FTFGSVLIA 240 (601)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~ 240 (601)
+-...+-|-++|.+++|+++|.+.+.. .|+ +.-|.....+|...|+|+++.+--.+.++ +.|+- ..+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHH
Confidence 445567788899999999999998876 577 67788888889999999998887777655 55653 234444456
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHH-hhchhc--CCCCChhhhhH-
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL-GKMKED--GFEPNVYTWNA- 316 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~--g~~~~~~~~~~- 316 (601)
+-..|++++|..=+ +...+...|....-...+.++++.. ..... +.+.+. .+.|+.....+
T Consensus 193 ~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~--a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQ--AMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred HHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHH--HHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 66677777765322 2223333333333333333433311 11111 112211 11222221111
Q ss_pred --------------------------------------HHHHHHHHhC----CCCCCHh---------HHHHHHH--Hhc
Q 045105 317 --------------------------------------MQLFSEMLSL----DLTPDIY---------TVGIILS--ACS 343 (601)
Q Consensus 317 --------------------------------------~~~~~~~~~~----~~~p~~~---------~~~~li~--~~~ 343 (601)
+.....+.+. -..++.. .-..++. -+.
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0111111110 0111111 1111111 123
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHH
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~ 420 (601)
-.|+.-.+..-++..++....++. .|--+..+|....+.++.+..|+... +.+..+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888888888888877654333 25566677999999999999998776 56777888888888888999999999
Q ss_pred HHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 045105 421 FRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP 498 (601)
Q Consensus 421 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 498 (601)
|++.++. .|+. ..|..+.-+.-+.+++++++..|+... ..++-.+.+|+...+.+...+++++|.+.++.. .++|
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k-kkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAK-KKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9999984 5554 578777777789999999999997744 456777889999999999999999999999876 3344
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 499 D---------SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 499 ~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
. +.+..+++-.-.+ +|+..|+.++.++.+++|.-..++..|+....+.|+.++|.++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 3344444444433 899999999999999999999999999999999999999999998753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-10 Score=109.98 Aligned_cols=467 Identities=11% Similarity=0.055 Sum_probs=370.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH----HHHcCCCCCHhhHHHHHHHH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFR----MQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~ 104 (601)
|.-+|++..-++.|..+++..++ ..+.+...|.+-...--.+|+.+...+++.+ +...|+..+...|..=...|
T Consensus 412 LwlAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 45577788889999999999999 7888999999888888899999999988875 45569999999999988999
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSN--PFVVNGLVDVYRRCGDMLSALKIFSKFSI---KNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 179 (601)
-..|..-.+..+....+..|+... ..+|..-...|.+.+.++-|..+|..... .+...|......--..|..++.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 999999999999999998887543 45888888999999999999999987763 3566787777777788999999
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
..+|++....- +.....|-.....+-..|+...|..++....+.. +-+...+...+..-....+++.|..+|.+...
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 99999988763 3344556666677788899999999999988632 22556677777888889999999999988876
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCC-HhHHHHH
Q 045105 260 LGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPD-IYTVGII 338 (601)
Q Consensus 260 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l 338 (601)
. .++..+|..-+..---.++.++|+++++ +..+ .-|+ ...|..+
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllE----------e~lk-----------------------~fp~f~Kl~lml 691 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLE----------EALK-----------------------SFPDFHKLWLML 691 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHH----------HHHH-----------------------hCCchHHHHHHH
Confidence 4 5677777777777777889999998887 3331 1233 2346666
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChh
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~ 415 (601)
-+.+-+.++.+.|...|..-.+. ++..+-.|-.|...-.+.|++-.|..++++.. +.+...|-..|..-.+.|+.+
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 66777778888888777654432 34567778888888889999999999999887 456788999999999999999
Q ss_pred hHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
.|..+..+.++. ++.+...|.--|...-+.++-......++. ..-|+++.-.+...|....++++|.+.|.+.
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876 455667787777776666665455444433 3557778888889999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 495 PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 495 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
...| +..+|.-+...+.++|.-+.-.+++.+...-+|.+-..+..+..
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 4455 45678888888999999999999999999999987766665554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-12 Score=124.27 Aligned_cols=487 Identities=13% Similarity=0.033 Sum_probs=296.7
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh
Q 045105 44 ECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 44 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (601)
.++..+... +..||.+||..+|.-||..|+.+.|- +|..|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 345555555 88999999999999999999999999 9999988888888889999999999988887765
Q ss_pred cCCCchHHHHHHHHHHHhcCCHHH---HHHHHhhcCC---C----Cc---------------hhHHHHHHHHHhcCCHHH
Q 045105 124 GFMSNPFVVNGLVDVYRRCGDMLS---ALKIFSKFSI---K----NE---------------VSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 124 g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~---~----~~---------------~~~~~li~~~~~~g~~~~ 178 (601)
.|...+|..|..+|...||... ..+.+..+.. + .. ..-...+.-.+-.|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888999999999999999654 3332222220 0 00 001123333344455555
Q ss_pred HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHH
Q 045105 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAI 258 (601)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (601)
+++++..+..... ..++..+++-+..... ...++......-.+ .|+..+|..++.+....|+++.|..++.+|.
T Consensus 158 llkll~~~Pvsa~---~~p~~vfLrqnv~~nt--pvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAW---NAPFQVFLRQNVVDNT--PVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccc---cchHHHHHHHhccCCc--hHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 5555544432110 0111122444333333 33333333222133 6899999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH--HHHHH----HHHhCCCCCCH
Q 045105 259 ALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA--MQLFS----EMLSLDLTPDI 332 (601)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~----~~~~~~~~p~~ 332 (601)
+.|++.+..-+..|+-+ .++...+..++. .|.+.|+.|+..++.. ...++ ...+.|. +..
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlr----------gmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s-q~~ 297 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLR----------GMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS-QLA 297 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHH----------HHHHhcCCCCcchhHHHHHhhhcchhhhhccccc-chh
Confidence 99999988877777755 666666666666 8899999999888764 12222 1111122 222
Q ss_pred hHHHHHHH-HhcC----CCchhh--HHHHHHHHH---HhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-------
Q 045105 333 YTVGIILS-ACSS----LATMER--GKQVHAYAI---RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST------- 395 (601)
Q Consensus 333 ~~~~~li~-~~~~----~~~~~~--a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 395 (601)
..+++-+. +.++ ..+++. ...+..... =.|+.....+|...+. ....|+-++.+++-..+..
T Consensus 298 hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 298 HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCc
Confidence 22222222 2221 222222 122222222 2355555555543333 2236776777666665542
Q ss_pred CChhhHHHHHHHHHHcC----------------------ChhhHHHHHHHH------------HHC----CCCc------
Q 045105 396 PDLVSQNAMLTAYAMHG----------------------HGKEGIAHFRRI------------LAS----GFRP------ 431 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~m------------~~~----~~~p------ 431 (601)
.++..|..++.-|.+.- ...+..++.... ... -..|
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAH 456 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhh
Confidence 23334444444333221 111111111111 000 0011
Q ss_pred -cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHH
Q 045105 432 -DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-----MAPDSVMWGA 505 (601)
Q Consensus 432 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 505 (601)
-...-+.++..|++.-+..+++..-+.....-++ ..|..|++.+..-.+.++|..+.++.. ...|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 0112344555666665555665444433332222 578889999999999999999998884 2235556778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc---CCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIEL---EPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
+.+...+.+....+..+++.+.+. .|....++..+.+-....|+.+...+..+-+...|+..
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888888888899998888774 33335667777777788999999999999888888876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-10 Score=103.96 Aligned_cols=489 Identities=12% Similarity=0.063 Sum_probs=328.5
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCcch
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSL 112 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 112 (601)
..++++..|..+|+.... ....+...|-..+..-.++..+..|..++++.... -|-+. .|--.+..--..|++..
T Consensus 84 esq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence 346678889999998887 66778888888888888999999999999988764 33332 23333334445688999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 045105 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS--IKNEVSCNTIIVGYCENGNVAEARELFDQMEHL- 189 (601)
Q Consensus 113 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 189 (601)
|.++|+.-.+ ..|+...|++.|+.-.+...++.|..++++.. +|++.+|--....--++|++..|..+|+.....
T Consensus 160 aRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 9999988777 57899999999999899999999999999876 788888888888888899999999988887643
Q ss_pred CC-CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHhcccCCHHHHHHH--------HHHHH
Q 045105 190 GV-QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT--SFTFGSVLIACADMNSLRKGKEI--------HALAI 258 (601)
Q Consensus 190 g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~ 258 (601)
|- ..+...++++...-.+...++.|.-+|+-.+. .++.+ ...|......--+-|+....+.. ++.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld--~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALD--HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 10 11223444444444556778888888876664 23323 33444444443444554444333 22233
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCCh--hhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 259 ALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNV--YTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
+.+ +.|-.+|-.++..-...|+.+...++|+ ..... ++|-. ..| -...|.
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yE----------rAIan-vpp~~ekr~W----------------~RYIYL 367 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYE----------RAIAN-VPPASEKRYW----------------RRYIYL 367 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHH----------HHHcc-CCchhHHHHH----------------HHHHHH
Confidence 322 4566677778888888899999998888 33311 11100 001 011121
Q ss_pred HHHHHh---cCCCchhhHHHHHHHHHHhCCCCchhHHhHHH----HHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHH
Q 045105 337 IILSAC---SSLATMERGKQVHAYAIRCGYDSDVHIGTALV----DMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTA 407 (601)
Q Consensus 337 ~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~ 407 (601)
-+=-+| ....+.+.+.+++....+ -++....++.-+= ..-.++.++..|.+++.... -|-..+|...|..
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 111111 245678888888888877 3344555555443 33457889999999998876 4777888888888
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC-CCcCchHHHHHHHHhhhcCChHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD-VKPSLKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 486 (601)
-.+.++++.+..++++.++-+ +-|..+|......=...|+.+.|..+|....+.. +......|.+.|+.=...|.++.
T Consensus 447 ElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 899999999999999999964 4456788887777788999999999997655532 22223356666666678999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHhc----CCC--CCchHHHHHHH
Q 045105 487 AYEFIKKI-PMAPDSVMWGALLGGCV-----SHG-----------NLEFGQIAADRLIEL----EPN--NTGNYVMLANL 543 (601)
Q Consensus 487 A~~~~~~~-~~~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~--~~~~~~~l~~~ 543 (601)
|..+++++ ...+...+|-++..--. ..+ ....|..+++++... .|. ....+..+.+.
T Consensus 526 aR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~ 605 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNM 605 (677)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999988 33566667777766544 233 456788888888764 221 11223333333
Q ss_pred HHHcCCHHHHHHHHHHH
Q 045105 544 FAYAGRWSDLARTRQKM 560 (601)
Q Consensus 544 ~~~~g~~~~A~~~l~~~ 560 (601)
-...|...+...+-..|
T Consensus 606 E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 606 EETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhcCchhhHHHHHHhc
Confidence 34456666655554444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-15 Score=137.09 Aligned_cols=256 Identities=16% Similarity=0.145 Sum_probs=112.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC-CCCHh-HHHHHHHHhcCCCch
Q 045105 271 ALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL-TPDIY-TVGIILSACSSLATM 348 (601)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~p~~~-~~~~li~~~~~~~~~ 348 (601)
.+...+.+.|++++|.+++. .... .. +|+.. .+..+...+...++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~----------~~~~----------------------~~~~~~~~~~~~~~a~La~~~~~~ 60 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLK----------KAAQ----------------------KIAPPDDPEYWRLLADLAWSLGDY 60 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc----------cccc----------------------cccccccccccccccccccccccc
Confidence 55777888999999998885 2211 11 23322 334455566678999
Q ss_pred hhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
+.|...++.+...+.. ++..+..++.. ...+++++|..+++..- .++...+..++..+...++++++..+++.+..
T Consensus 61 ~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 61 DEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999877644 56667777777 78999999999987764 46667788888999999999999999999876
Q ss_pred CC-CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHH
Q 045105 427 SG-FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--MAPDSVMW 503 (601)
Q Consensus 427 ~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 503 (601)
.. .+++...|..+...+.+.|+.++|++.++...+.. +.|......++..+...|+.+++.++++... ...|+..|
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 43 34566678888899999999999999997766643 3357788899999999999999888887662 24567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
..+..+|...|++++|...++++.+..|+|+.+..+++.++...|+.++|.++.++..
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999987654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-10 Score=105.55 Aligned_cols=380 Identities=12% Similarity=0.080 Sum_probs=218.9
Q ss_pred CCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
++++..|.++|+++++ .+...|...+.+=.++..+..|..+|+..... .|.-...|-..+..--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4677889999999886 45566777777778888888888888887763 222333455555555667788888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK--- 158 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 158 (601)
|++..+. .|+...|.+.++.-.+.+..+.|..+++..+- +.|++..|....+.-.+.|....|..+|+...+.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8877764 78888888888877777788888888877765 3577777777777777777777777777655421
Q ss_pred ---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------------------------------C
Q 045105 159 ---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGV-------------------------------------------Q 192 (601)
Q Consensus 159 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------------------------------------~ 192 (601)
+...+.++...-.++..++.|.-+|+-.+..-. +
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 122233333333334444444444444433210 2
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-------hhHHHHHHHh---cccCCHHHHHHHHHHHHHcCC
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-------FTFGSVLIAC---ADMNSLRKGKEIHALAIALGL 262 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 262 (601)
.|-.+|-..++.-...|+.+...++|+... .+++|-. ..|..+=.++ ....+++.+.++++...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hc
Confidence 233344444444444455555555555544 2344421 1111111111 124455555555555554 22
Q ss_pred CCchhHHHHHHHH----HHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHH
Q 045105 263 QSDTFVGGALVEM----YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGII 338 (601)
Q Consensus 263 ~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 338 (601)
+...+|+..+--+ -.++.++..|.+++. ... |..|-..+|...
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG----------~AI-----------------------G~cPK~KlFk~Y 443 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILG----------NAI-----------------------GKCPKDKLFKGY 443 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHH----------HHh-----------------------ccCCchhHHHHH
Confidence 3333333322222 233444545544444 222 556666666666
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCChh----hHHHHHHHHHHcCC
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLV----SQNAMLTAYAMHGH 413 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~----~~~~ll~~~~~~~~ 413 (601)
|..=.+.++++.+..+++...+-+. -+-.++......-...|+.+.|..+|+-.. +|... .|...|..-...|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 6666667777777777777666542 244555555555556677777777776554 33332 34444444455667
Q ss_pred hhhHHHHHHHHHHC
Q 045105 414 GKEGIAHFRRILAS 427 (601)
Q Consensus 414 ~~~a~~~~~~m~~~ 427 (601)
++.|..+++++++.
T Consensus 523 ~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 523 FEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-11 Score=106.96 Aligned_cols=451 Identities=12% Similarity=0.079 Sum_probs=270.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH-HHHHHHhcCCcchHHHHHHHHHHhcCCCchH----HHHHHHHH
Q 045105 64 AVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSS-VLPACARLQKLSLGKEFHGYITRNGFMSNPF----VVNGLVDV 138 (601)
Q Consensus 64 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~ 138 (601)
.|.+-|..+....+|+..|+-+.+...-|+...+.. +-+.+.+.+.+.+|.+++...+..-...+.. ..+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345556666777788888888877777777654432 2344666677888888887776653222222 33333344
Q ss_pred HHhcCCHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeeh--------HHHHHHHHhC
Q 045105 139 YRRCGDMLSALKIFSKFS--IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISW--------NSMISGYVDN 208 (601)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--------~~li~~~~~~ 208 (601)
+.+.|.++.|+.-|+... .||..+--.++-++..-|+-++..+.|..|...-..||..-| ..|+.-..++
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 667788888888887765 345554334444555577888888888887754333333222 1222222211
Q ss_pred CCh--------hHHHHHH---HHHHHcCCCCCChh-hHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045105 209 SLY--------DEAFSMF---RDLLMRDGIEPTSF-TFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMY 276 (601)
Q Consensus 209 ~~~--------~~a~~~~---~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 276 (601)
... ..|.+.+ -++.. .-+.|+-. -|..-+.........+.|. +.. -.-...|
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~-------------dle--i~ka~~~ 429 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAI-------------DLE--INKAGEL 429 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhh-------------hhh--hhHHHHH
Confidence 110 0111111 11111 11112110 0111111111111111111 111 1122347
Q ss_pred HhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHH
Q 045105 277 CRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356 (601)
Q Consensus 277 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 356 (601)
.+.|+++.|.+++.. .. ..|..+- .-..+-.+++.-+-...++..|.++-+
T Consensus 430 lk~~d~~~aieilkv----------~~----~kdnk~~---------------saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKV----------FE----KKDNKTA---------------SAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred HhccCHHHHHHHHHH----------HH----hccchhh---------------HHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 789999999988883 32 1111111 111122233333334456666666665
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHH---HHHHHcCChhhHHHHHHHHHHCCCCccH
Q 045105 357 YAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAML---TAYAMHGHGKEGIAHFRRILASGFRPDH 433 (601)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (601)
...... +-++.....-.+.-...|++++|...+++....|...-.+|. ..+-..|+.++|+..|-++..- +..+.
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 554322 112221111122233479999999999999877665444433 3467789999999999887653 34455
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHH-HhCCCC-CCHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI-KKIPMA-PDSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~-~~~~~~~~l~~~~~ 511 (601)
..+..+.+.|....+..+|++++... ..-++.|+.+.+.|.+.|-+.|+-..|.+.. +....- .+..+..-|...|.
T Consensus 559 evl~qianiye~led~aqaie~~~q~-~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQA-NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHh-cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 67777888899999999999998553 3346667889999999999999999998764 444433 46667776777778
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
...-+++++..++++.-+.|+-...-..++.|+.+.|+++.|.++++..-.
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888899999999999999997667777888899999999999999987653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-11 Score=118.02 Aligned_cols=283 Identities=10% Similarity=-0.049 Sum_probs=209.0
Q ss_pred CCCCchhHHHHHhhCCC--CCcc-chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 045105 4 KCGSLDDAKKVFKMMPE--RDCV-SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIG 80 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 80 (601)
..|+++.|++.+.+..+ |++. .+-....+..+.|+++.|.+.+....+. .+.+.....-.....+...|+++.|.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 46999999999999886 3332 3344456678889999999999998764 222222344445888899999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHH---H----hcCCHHHHHHHHh
Q 045105 81 MLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVY---R----RCGDMLSALKIFS 153 (601)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~----~~~~~~~a~~~~~ 153 (601)
.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..+.......-..++ . .....+...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999874 3355678888899999999999999999999987544332211111111 2 2233445555666
Q ss_pred hcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeee---hHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045105 154 KFSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIIS---WNSMISGYVDNSLYDEAFSMFRDLLMRDGI 227 (601)
Q Consensus 154 ~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (601)
..+. .+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6553 377889999999999999999999999998864 44332 122222334457788899999888763333
Q ss_pred CCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 228 EPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 332245557778889999999999999976666668888889999999999999999999998
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=124.26 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=182.3
Q ss_pred CCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCC--CCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 045105 329 TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY--DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLT 406 (601)
Q Consensus 329 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~ 406 (601)
.-+......+.++|...+++++|+.+|+.+.+... .-+..+|.+.+-.+-+.=.+.--.+-+-.+.+..+.+|-++..
T Consensus 350 ~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GN 429 (638)
T KOG1126|consen 350 YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGN 429 (638)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcc
Confidence 33446778888999999999999999999887532 2367778777755433222221112222233566789999999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHH---HHHhhhcC
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM---VDLLSRAG 482 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g 482 (601)
+|.-+++.+.|++.|++.+. +.| ..++|+.+..=+.....+|.|...|+.. +..|+.+|+++ .-.|.+.+
T Consensus 430 cfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhhheeccc
Confidence 99999999999999999988 466 5678888888888888999999999653 45566666664 45688999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 483 ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
+++.|+-.|+++ .+.| +.+....+...+-+.|+.|+|+++++++..++|.|+..-+.-+.++...+++++|++.|+++
T Consensus 504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999999988 6777 66777777788889999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 045105 561 KDRR 564 (601)
Q Consensus 561 ~~~~ 564 (601)
++.-
T Consensus 584 k~~v 587 (638)
T KOG1126|consen 584 KELV 587 (638)
T ss_pred HHhC
Confidence 8765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-11 Score=116.02 Aligned_cols=274 Identities=11% Similarity=-0.009 Sum_probs=213.1
Q ss_pred CCCchhHHHHHhhCCCC--CccchHHH-HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHH--HHHHHHhhcCChHHHH
Q 045105 5 CGSLDDAKKVFKMMPER--DCVSWNSV-VTACAANGLVLEALECLERMSSLDNETPNLVSWS--AVIGGFTQNGYDEEAI 79 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~ 79 (601)
.|++++|++.+....+. ++..+..+ ..+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 59999999999987763 33333333 34447899999999999999863 34443322 3467889999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchH-------HHHHHHHHHHhcCCHHHHHHHH
Q 045105 80 GMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPF-------VVNGLVDVYRRCGDMLSALKIF 152 (601)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 152 (601)
..++++.+.. +-+...+..+...+.+.|+++.|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998874 4456678888899999999999999999999987653331 3334444444556677778888
Q ss_pred hhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 045105 153 SKFSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP 229 (601)
Q Consensus 153 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p 229 (601)
+.++. .+......+...+...|+.++|.+.+++..+. +++.. -.++.+.+..++++++++.++...+. .+-
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~ 326 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGD 326 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCC
Confidence 87763 37778899999999999999999999998874 34442 22345555679999999999998862 233
Q ss_pred ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 230 TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 230 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
|...+..+-..+...+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.++++
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455777788899999999999999999976 5888888999999999999999999888
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=120.28 Aligned_cols=250 Identities=10% Similarity=0.062 Sum_probs=198.1
Q ss_pred CCCCCchhHHHHHhhCCC--CCccchH--HHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 3 GKCGSLDDAKKVFKMMPE--RDCVSWN--SVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~--~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
.+.|+++.|.+.|.++.+ |+...+. .....+...|++++|...++.+.+ ..|-+...+..+...|.+.|+|++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 467999999999999986 3333333 235678889999999999999998 5567788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 045105 79 IGMLFRMQAEGLEPNA-------RTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKI 151 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (601)
.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999988655333 13333444444444555566666665443 356788889999999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh
Q 045105 152 FSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS 231 (601)
Q Consensus 152 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 231 (601)
+++........--.++.+.+..++.+++++..+...+.. +-|...+..+.+.+.+.++|++|.+.|+.... ..|+.
T Consensus 286 L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~ 361 (398)
T PRK10747 286 ILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDA 361 (398)
T ss_pred HHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCH
Confidence 988875444444445566667799999999999998774 34556678889999999999999999999886 67999
Q ss_pred hhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 232 FTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
.++..+...+...|+.++|.+++++-..
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999987654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-09 Score=95.34 Aligned_cols=444 Identities=13% Similarity=0.084 Sum_probs=234.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
+.-+....++..|+.+++.-... ...-...+-..+..++...|++++|...+..+.+.. .|+...+..|.-+..-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 55566778899999988875542 111112333445667788999999999999887754 5566666666555555677
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
+.+|..+-+.. +.++-....+++...+.++-++...+-+.+.... .---++....-..-++++|++++......
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777665432 3334444556666677888877777766666432 22223344444456788899999888765
Q ss_pred CCCCCeeehHHHH-HHHHhCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchh
Q 045105 190 GVQRGIISWNSMI-SGYVDNSLYDEAFSMFRDLLMRDGIEPTS-FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTF 267 (601)
Q Consensus 190 g~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (601)
.|.-...|.-+ -+|.+..-++-+.+++...++ -.||. ...+.......+.=+-..|++-.+.+.+.+-..
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~---q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR---QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH---hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 34444445433 456677777878888777665 23443 222222222222111112222222222211100
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHh
Q 045105 268 VGGALVEMYCRY-----QDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSAC 342 (601)
Q Consensus 268 ~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 342 (601)
-..+.-+++. .+-+.|++++. .+. .+-|. .-..++--+
T Consensus 253 --~~f~~~l~rHNLVvFrngEgALqVLP----------~L~-----------------------~~IPE--ARlNL~iYy 295 (557)
T KOG3785|consen 253 --YPFIEYLCRHNLVVFRNGEGALQVLP----------SLM-----------------------KHIPE--ARLNLIIYY 295 (557)
T ss_pred --chhHHHHHHcCeEEEeCCccHHHhch----------HHH-----------------------hhChH--hhhhheeee
Confidence 1112222221 12233333333 111 00111 111234445
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC-------hHHHHHHHhcCCC-----CChhhHHHHHHHHHH
Q 045105 343 SSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS-------LKHARLAYKRIST-----PDLVSQNAMLTAYAM 410 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~ 410 (601)
.+.+++.+|..+.+.+. ...|-..+...++ ++..|+ +.-|.+.|+-... .++.--.++..++.-
T Consensus 296 L~q~dVqeA~~L~Kdl~--PttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLD--PTTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHhhcC--CCChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 56666666666554322 1112222222222 222222 3445555544331 122233444555555
Q ss_pred cCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHH
Q 045105 411 HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEF 490 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 490 (601)
..++++++-.++.+..--...|...| .+.++.+..|.+.+|+++|-.+....++.+..-...|.++|.+.++++-|+++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 56677777777766665333333333 35667777777777777775544444443333334455777777777777777
Q ss_pred HHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 491 IKKIPMAPDSVMW-GALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 491 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+-++....+..+. ..+..-|.+.+.+=-|-+.++.+..++|
T Consensus 451 ~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 451 MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 7777522233333 3334457777776667777777777777
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=118.05 Aligned_cols=283 Identities=12% Similarity=0.066 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHh
Q 045105 246 SLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLS 325 (601)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 325 (601)
+..+|...|..+..+ +.-...+...+..+|...+++++|.++|+.+......
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------------- 385 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------------- 385 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Confidence 456677777773333 3334467778899999999999999999943221110
Q ss_pred CCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHH
Q 045105 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDL---VSQN 402 (601)
Q Consensus 326 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 402 (601)
..-+..+|++.+-.+-+ +-++.++..-.-..-+-.+.+|.++.++|.-+++.+.|++.|++..+.|+ .+|+
T Consensus 386 --rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayT 459 (638)
T KOG1126|consen 386 --RVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYT 459 (638)
T ss_pred --cccchhHHHHHHHHHHh----hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhh
Confidence 01123345555443322 11222222222122355789999999999999999999999999986444 5777
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
.+..-+.....++.|...|+..+. +.|..+ .|-.+.-.|.+.++++.|+-.|+...+-+ +.+......+...+.+.
T Consensus 460 LlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 460 LLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQL 536 (638)
T ss_pred hcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHh
Confidence 777778888999999999998876 456554 67778889999999999999997755533 23345566677888899
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|+.++|+.+++++ ...| |+.+----...+...+++++|++.++++.+..|++..++..++.+|.+.|+.+.|+.-+-=
T Consensus 537 k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 9999999999998 3344 5555445556677789999999999999999999999999999999999999999999887
Q ss_pred HhhcCC
Q 045105 560 MKDRRM 565 (601)
Q Consensus 560 ~~~~~~ 565 (601)
+.+-++
T Consensus 617 A~~ldp 622 (638)
T KOG1126|consen 617 ALDLDP 622 (638)
T ss_pred HhcCCC
Confidence 777665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=126.26 Aligned_cols=252 Identities=15% Similarity=0.084 Sum_probs=63.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 30 VTACAANGLVLEALECLERMSSLDN-ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
...+.+.|++++|++++...... . ++.+..-|..+.......++++.|.+.++++...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 44444555555555555332221 1 2223333333344444455555555555555443211 23334444443 3445
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHHHHHHHH
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS-----IKNEVSCNTIIVGYCENGNVAEARELF 183 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~ 183 (601)
++++|.++++...+. .++...+..++..+.+.++++++.++++... ..+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444332 1333444445555555555555555554432 123334445555555555555555555
Q ss_pred HHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCC
Q 045105 184 DQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQ 263 (601)
Q Consensus 184 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (601)
++..... +.|....+.++..+...|+.+++..++....... +.|...+..+..++...|+.++|...++...+.. +
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 5555442 1234444455555555555555555554444311 2333344444555555555555555555554432 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 264 SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.|+.+...+..++...|+.++|.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp T-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 345555555555555666555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-10 Score=111.83 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=51.2
Q ss_pred CChHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAPD-S--VMWGALLGGCVSHGNLEFGQIAAD--RLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
++.+.+.+.+++. ...|+ + ....++...|.+.|++++|.+.++ .+.+..| ++..+.+++.++.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555544 22342 3 455667777777777777777777 4555666 44456677777777788777777
Q ss_pred HHHHHh
Q 045105 556 TRQKMK 561 (601)
Q Consensus 556 ~l~~~~ 561 (601)
++++..
T Consensus 392 ~~~~~l 397 (409)
T TIGR00540 392 MRQDSL 397 (409)
T ss_pred HHHHHH
Confidence 777653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-09 Score=101.42 Aligned_cols=266 Identities=11% Similarity=0.016 Sum_probs=199.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHh
Q 045105 263 QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSAC 342 (601)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 342 (601)
.-+..+...-.+-+...+++.+..++++ .+.+ ..++....+..-|.++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~----------~lle----------------------~dpfh~~~~~~~ia~l 288 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITE----------ELLE----------------------KDPFHLPCLPLHIACL 288 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhH----------HHHh----------------------hCCCCcchHHHHHHHH
Confidence 3455555566666777888888887777 3331 1123333444455677
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChhhHHH
Q 045105 343 SSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD---LVSQNAMLTAYAMHGHGKEGIA 419 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~ 419 (601)
...|+..+-..+-..+++.- +..+.+|-++...|...|+..+|++.|.+...-| ...|-.+..+|+-.|..++|+.
T Consensus 289 ~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAma 367 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMA 367 (611)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHH
Confidence 77777776666666666643 4567888899999999999999999999877433 3578899999999999999999
Q ss_pred HHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC----
Q 045105 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP---- 495 (601)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 495 (601)
.+...-+. ++-....+..+.--|.+.+..+.|.++|...... .+-|+...+-+.-.....+.+.+|..+|+..-
T Consensus 368 aY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 368 AYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 99887664 2222223344455578889999999999653322 24456677888777888999999999997661
Q ss_pred -CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 496 -MAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 496 -~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.+ =.++++.|..+|++.+.+++|+..+++++.+.|.++.++..++-+|...|+++.|.+.+.+..-.
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 111 24568889999999999999999999999999999999999999999999999999998876543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-10 Score=99.37 Aligned_cols=179 Identities=9% Similarity=0.078 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
..+...+....+.+.|..++.+..+. .|+.+ .-..+.+.....|+++.|.+.|+.+.+.+...-..+...|..+|..
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 33445555567788888888888775 44443 3334556777888888888888777777655556777888888888
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH---HcCCHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA---YAGRWSDLART 556 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~ 556 (601)
.|+.++....+.++ ...++...-..+...-....-.+.|...+.+-....| +...+..|+..-. ..|++.+....
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHH
Confidence 88888888888776 3345555444444444444446677777777777788 5555566665443 45778999999
Q ss_pred HHHHhhcCCccCCCcceEEeCCceeee
Q 045105 557 RQKMKDRRMHKSPGCSWIEDRDEIHKF 583 (601)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (601)
++.|....++..|...+-.+...++.+
T Consensus 341 lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 341 LRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHHHHHHHHhhcCCceecccCCcceee
Confidence 999999988888887666666665555
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=98.73 Aligned_cols=289 Identities=12% Similarity=0.059 Sum_probs=163.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHH
Q 045105 173 NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKE 252 (601)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 252 (601)
.|++..|+++..+-.+.+ .-....|..-.++.-..|+.+.+-.++.+..+ ..-.++...+-+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 466666666666655544 22233344445555666777777777766554 2223333444444455666677777776
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCH
Q 045105 253 IHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDI 332 (601)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 332 (601)
-+..+.+.+ +-++.+......+|.+.|++.....++. .+.+.|.-.+...-
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~----------~L~ka~~l~~~e~~------------------ 225 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILP----------KLRKAGLLSDEEAA------------------ 225 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHH----------HHHHccCCChHHHH------------------
Confidence 666666655 3345566667777777777777776666 55544433322110
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYA 409 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~ 409 (601)
+ ....++..+++-....+..+.-...|+..+ +.++..-.+++.-+.
T Consensus 226 --------------------~-----------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li 274 (400)
T COG3071 226 --------------------R-----------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI 274 (400)
T ss_pred --------------------H-----------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH
Confidence 0 011223333333333333333444555544 344555555666667
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAY 488 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 488 (601)
+.|+.++|.++..+..+++..|+. ...-.+.+.++.+.-++.. ......+..| ..+.+|...|.+.+.|.+|.
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHH
Confidence 777777777777777777666651 1222345566666666655 3333333333 45666666677777777777
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 489 EFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 489 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+.|+.. ...|+..+|.-+..++.+.|+.++|.+..++..-+
T Consensus 349 ~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 349 EALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777655 45666777777777777777777777666666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-09 Score=97.50 Aligned_cols=360 Identities=11% Similarity=0.079 Sum_probs=245.6
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH--H
Q 045105 159 NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG--S 236 (601)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~ 236 (601)
|...+-.....+.+.|....|.+.|......- +-...+|..|.... -+.+.+. .+ . .+...|...+. .
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~-~l---~--~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS-IL---V--VGLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH-HH---H--hcCcccchHHHHHH
Confidence 44444445555667888888888888776432 22333444443332 2222221 11 1 22222222221 2
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
+..++-...+.+++.+-.......|++.+...-+....+.-...++++|+.+|+ ++.++ |+.-.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Fe----------ei~kn----DPYRl-- 296 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFE----------EIRKN----DPYRL-- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHH----------HHHhc----CCCcc--
Confidence 234455556778888888888888888888777777777888899999999999 55522 22211
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCC
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP 396 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (601)
-|..+|+.++-.-.... .+.++..-...--+--+.|...+.+.|.-.++.++|...|++..+.
T Consensus 297 -------------~dmdlySN~LYv~~~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 297 -------------DDMDLYSNVLYVKNDKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred -------------hhHHHHhHHHHHHhhhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 23344554443222111 1111211111111233456667788888899999999999988853
Q ss_pred C---hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHH
Q 045105 397 D---LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC 473 (601)
Q Consensus 397 ~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (601)
| ...|+.+..-|....+...|++-+++.++-. +-|-..|-.|.++|.-.+.+.=|+-+|+...... +-|...|.+
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~a 437 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVA 437 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHH
Confidence 3 4578888899999999999999999999853 4466799999999999999999999997755543 456789999
Q ss_pred HHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCCchHHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKIP--MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL-------EPNNTGNYVMLANLF 544 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~ 544 (601)
|.++|.+.++.++|++-|++.- -..+...+..|...|-+.++.++|...+++.++. +|....+..-|+.-+
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 9999999999999999999872 2446688999999999999999999999998883 343444555577788
Q ss_pred HHcCCHHHHHHHHHHHhhc
Q 045105 545 AYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 545 ~~~g~~~~A~~~l~~~~~~ 563 (601)
.+.+++++|........+-
T Consensus 518 ~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HhhcchHHHHHHHHHHhcC
Confidence 8899999988876555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-09 Score=96.99 Aligned_cols=230 Identities=16% Similarity=0.149 Sum_probs=181.0
Q ss_pred CCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCC--CCchhHHhHHHHHHHhcCChHH---HHHHHhcCCCCChhhH
Q 045105 327 DLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY--DSDVHIGTALVDMYAKCGSLKH---ARLAYKRISTPDLVSQ 401 (601)
Q Consensus 327 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~ 401 (601)
|..-+...-+....+.-...+++.|..+|+++.+... --|..+|..++ |.+..+-.- |..+ -.+.+--+.|.
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v-~~idKyR~ETC 333 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNV-SNIDKYRPETC 333 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHH-HHhccCCccce
Confidence 4444444445555566678899999999999998743 12566776665 333332221 2222 22334445666
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
.++.+-|+-.++.++|...|++.++. .|.. ..|+.+.+=|....+...|.+-++...+-. +.|-..|-.|..+|.-
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 67778888899999999999999984 5655 467777788999999999999997766643 5577799999999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
.+...-|+-+|+++ ..+| |+..|.+|...|.+.++.++|+..++++.....-+..++..|+.+|.+.++.++|.+.++
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998 5567 899999999999999999999999999999976677899999999999999999999988
Q ss_pred HHhh
Q 045105 559 KMKD 562 (601)
Q Consensus 559 ~~~~ 562 (601)
+..+
T Consensus 491 k~v~ 494 (559)
T KOG1155|consen 491 KYVE 494 (559)
T ss_pred HHHH
Confidence 7765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-11 Score=107.07 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=163.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (601)
....+..+...+...|++++|...+++.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45667778888999999999999998765 3445677888889999999999999999998864 4455677788888
Q ss_pred HhccCchHHHHHHHHHHHhcCC-CcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDV-KPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFG 519 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 519 (601)
+...|++++|...++....... +.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999966655432 223456777888999999999999999887 3344 466788888899999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 520 QIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.+.++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-09 Score=97.13 Aligned_cols=276 Identities=12% Similarity=0.034 Sum_probs=224.1
Q ss_pred CCCchhHHHHHhhCCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPERDC---VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
.|+|.+|+++..+..+... ..|..-..+..+.|+.+.+-..+.+..+. ...++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5999999999998876433 34554556677789999999999999885 4567778888889999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch-------HHHHHHHHHHHhcCCHHHHHHHHhh
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP-------FVVNGLVDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (601)
+.++.+.+ +-+........++|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998875 445667888899999999999999999999999976654 3566666666566666666667777
Q ss_pred cCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh
Q 045105 155 FSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS 231 (601)
Q Consensus 155 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 231 (601)
.+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|. -...-.+.+-+++..-++..++-....+..|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 763 3677788899999999999999999999998876666 2223345677888888888887776566655
Q ss_pred hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 232 FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
..+.++-..|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+...|.++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 6777788889999999999999996655 47899999999999999999999998888
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-09 Score=99.12 Aligned_cols=194 Identities=9% Similarity=0.005 Sum_probs=148.4
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHc
Q 045105 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMH 411 (601)
Q Consensus 335 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 411 (601)
|.-+...|....+.++....|+...+.+.. ++.+|.--..++.-.+++++|..=|++... .+...|-.+.-+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 666677788889999999999988877643 556666666677778899999999998874 3445666666666788
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-------CcCchHHHHHHHHhhhcCCh
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV-------KPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~ 484 (601)
++++++...|++.+++ ++--+..|+.....+...+++++|.+.|+...+.-. .+.+.+...++-.= -.+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 9999999999999987 455567899999999999999999999966554321 11222223333222 34899
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
..|++++.+. .+.| ....+.+|...-...|+.++|++++++...+..
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999988 5556 466788888889999999999999999988754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-07 Score=87.79 Aligned_cols=214 Identities=17% Similarity=0.136 Sum_probs=122.9
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC----CCh-hhHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST----PDL-VSQNAMLTA 407 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~ll~~ 407 (601)
..|+..+..--..|-++....+++.+++..+. ++.+.......+..+.-++++.+++++-.. |++ ..|+..+.-
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34555555556667888889999999987764 333333344445566778999999998762 444 478887777
Q ss_pred HHHc---CChhhHHHHHHHHHHCCCCccHHhHHHHHHH--HhccCchHHHHHHHHHHHhcCCCcC--chHHHHHHHHhhh
Q 045105 408 YAMH---GHGKEGIAHFRRILASGFRPDHISFLSALSA--CVHAGSIKTGSEFFDLMAYYDVKPS--LKHYTCMVDLLSR 480 (601)
Q Consensus 408 ~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 480 (601)
+.+. -..+.|..+|++.++ |.+|...-+..|+-+ =.+.|....|+.+++.. ..++++. ...||..|.-...
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera-t~~v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA-TSAVKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH
Confidence 6653 357899999999999 677766533223222 23567778888888663 3344443 2356655543222
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcC-CC-CCchHHHHHHHHHHcCC
Q 045105 481 AGELGEAYEFIKKI-PMAPDSVMW---GALLGGCVSHGNLEFGQIAADRLIELE-PN-NTGNYVMLANLFAYAGR 549 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 549 (601)
.=-......++++. ..-|+...- -.+...-.+.|.+++|..++.-..+.- |. ++.-+..+=..-.+-|+
T Consensus 635 ~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 11112223333332 112332211 112222345567777777776666653 32 33445555555556666
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-08 Score=88.29 Aligned_cols=454 Identities=11% Similarity=0.048 Sum_probs=279.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCH
Q 045105 66 IGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDM 145 (601)
Q Consensus 66 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 145 (601)
+.-+....++..|+.+++.-...+-.-...+-..+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55667788999999998876644322222333334456678899999999999888754 66677777777777788999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045105 146 LSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD 225 (601)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 225 (601)
.+|..+-.... ++...-..+.+...+.++-++-..+-..+...- ..--+|.....-.-.+++|++++...+.
T Consensus 108 ~eA~~~~~ka~-k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~-- 179 (557)
T KOG3785|consen 108 IEAKSIAEKAP-KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQ-- 179 (557)
T ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99998877654 344445566666777788777776666654321 1112233333334468999999999887
Q ss_pred CCCCChhhHHHHHH-HhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 226 GIEPTSFTFGSVLI-ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR--YQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 226 ~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
-.|+-...+.-+. +|.+..-++-+.++++--.+. ++.++...|.......+ .|+..++ -.. .+
T Consensus 180 -dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~--E~k----------~l 245 (557)
T KOG3785|consen 180 -DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED--EKK----------EL 245 (557)
T ss_pred -cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH--HHH----------HH
Confidence 2345445554443 455666677777777666554 23344444544443333 2332222 111 11
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
.+.+-. .| ...+.+.. .-+.--.+-+.|++++--+.+. .|. .--.|+-.|.+.++
T Consensus 246 adN~~~----~~---~f~~~l~r--------------HNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 246 ADNIDQ----EY---PFIEYLCR--------------HNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQND 300 (557)
T ss_pred Hhcccc----cc---hhHHHHHH--------------cCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeeccccc
Confidence 100000 00 00000000 0111223456677777655543 222 23356677899999
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-------hhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHH
Q 045105 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGH-------GKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 454 (601)
+.+|..+.+.+.+.++.-|-.-...++..|+ ..-|.+.|+-.-+++..-|.. --.++.+++.-..++++.+.
T Consensus 301 VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 301 VQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999987666655443344444443 344555555554555444443 34445556666678899999
Q ss_pred HHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCC
Q 045105 455 FFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MA-PDSVMWGALLGG-CVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p 531 (601)
++..+...=...|...+| +..+++..|.+.+|+++|-++. -+ .|..+|.+++.- |.+.+.++.|.+++-+.. .|
T Consensus 381 YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~ 457 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TP 457 (557)
T ss_pred HHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--Cc
Confidence 888877665555555554 7899999999999999998884 12 466777765554 567888887776653321 23
Q ss_pred CCC-chHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCC
Q 045105 532 NNT-GNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 532 ~~~-~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 570 (601)
.+. ..+..+++.|.+.+.+==|-+.|+.+...++.|..+
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 333 344567778889999988999999998888766544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-09 Score=93.24 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=122.2
Q ss_pred cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHhcCC
Q 045105 36 NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA------RTLSSVLPACARLQK 109 (601)
Q Consensus 36 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~ 109 (601)
+++.++|+++|-+|.+ ..+.+..+.-+|...|.+.|..+.|+++.+.+.++ ||. ...-.|.+-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777766 44455556666666777777777777777766653 222 123334444556666
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch--------hHHHHHHHHHhcCCHHHHHH
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV--------SCNTIIVGYCENGNVAEARE 181 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~ 181 (601)
++.|+.+|..+...| ..-......|+..|-...+|++|+++-+++..-+.. .|.-+...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 677777776666544 233445556666666666666666665544422211 24444444455566666666
Q ss_pred HHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 045105 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL 260 (601)
Q Consensus 182 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (601)
++....+.+ +..+..-..+.+.+...|++..|++.++.+.+ .+..--..+...+..+|...|+.++....+..+.+.
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 666665543 23334444455566666666666666666554 333233344455555555666666555555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-12 Score=82.04 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=44.6
Q ss_pred CChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 045105 57 PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACAR 106 (601)
Q Consensus 57 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (601)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988864
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-07 Score=89.30 Aligned_cols=456 Identities=14% Similarity=0.063 Sum_probs=243.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--Hhc
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC--ARL 107 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~ 107 (601)
++.+...|++++|......+.. ..+-+...+..=+-++.+.+.+++|+.+.+.-... ..+..-+ +=++| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHc
Confidence 4556677888888888888887 45666777777788888888888888665543321 1111111 22344 356
Q ss_pred CCcchHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045105 108 QKLSLGKEFHGYITRNGFMSN-PFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQM 186 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 186 (601)
+..++|...++ |..++ ..+...-...+.+.|++++|..+|+.+...+...+..-+.+-+..--.....+ .+
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LL 164 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HH
Confidence 77888777776 33333 33666666777888888888888888865555544443332111100000011 12
Q ss_pred HhcCCCCCeeehHHHH---HHHHhCCChhHHHHHHHHHHHc------CC------CCCChhh-HHHHHHHhcccCCHHHH
Q 045105 187 EHLGVQRGIISWNSMI---SGYVDNSLYDEAFSMFRDLLMR------DG------IEPTSFT-FGSVLIACADMNSLRKG 250 (601)
Q Consensus 187 ~~~g~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~------~~------~~p~~~~-~~~ll~~~~~~~~~~~a 250 (601)
......| ..+|..+. ..+...|+|.+|+++++...+. .+ +.-+..+ -..+.-++-..|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2222122 34555444 3456678888888888776320 00 0000000 11122223345566666
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC
Q 045105 251 KEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP 330 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 330 (601)
.+++..+.+.... |........+-+. .+.. ..--+
T Consensus 244 ~~iy~~~i~~~~~-D~~~~Av~~NNLv-----------------------a~~~---------------------d~~~~ 278 (652)
T KOG2376|consen 244 SSIYVDIIKRNPA-DEPSLAVAVNNLV-----------------------ALSK---------------------DQNYF 278 (652)
T ss_pred HHHHHHHHHhcCC-CchHHHHHhcchh-----------------------hhcc---------------------ccccC
Confidence 6666555555422 2211111110000 0000 00000
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCC-hhhHHHHHHH-H
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD-LVSQNAMLTA-Y 408 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ll~~-~ 408 (601)
|. ......-.......+..+.-+..-.. -....-+.++..| .+..+.+.++....+... ...+.+++.. +
T Consensus 279 d~--~~l~~k~~~~~~l~~~~l~~Ls~~qk----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t 350 (652)
T KOG2376|consen 279 DG--DLLKSKKSQVFKLAEFLLSKLSKKQK----QAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEAT 350 (652)
T ss_pred ch--HHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHH
Confidence 10 00000000000011111111111111 1111123344444 355666777766666322 2334444433 3
Q ss_pred HH-cCChhhHHHHHHHHHHCCCCccH--HhHHHHHHHHhccCchHHHHHHHH--------HHHhcCCCcCchHHHHHHHH
Q 045105 409 AM-HGHGKEGIAHFRRILASGFRPDH--ISFLSALSACVHAGSIKTGSEFFD--------LMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 409 ~~-~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~ 477 (601)
.. ...+..+..++...-+. .|.. ......+......|+++.|.+++. .+.+.+..| .+..++...
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l 426 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVAL 426 (652)
T ss_pred HHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHH
Confidence 22 23477888888877765 3443 455566677788999999999997 444444444 455667788
Q ss_pred hhhcCChHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 478 LSRAGELGEAYEFIKKI-----PMAPDSV----MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-----~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
+.+.++.+-|..++.+. ...+... ++.-+...-.++|+.++|...++++.+.+|++..+...++.+|++.
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~- 505 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL- 505 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-
Confidence 88888877777776655 1122223 3333444445779999999999999999999999999999998764
Q ss_pred CHHHHHHHHH
Q 045105 549 RWSDLARTRQ 558 (601)
Q Consensus 549 ~~~~A~~~l~ 558 (601)
+.+.|..+-+
T Consensus 506 d~eka~~l~k 515 (652)
T KOG2376|consen 506 DPEKAESLSK 515 (652)
T ss_pred CHHHHHHHhh
Confidence 4566665533
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-12 Score=80.80 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=44.3
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999999999999999999988874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-09 Score=104.61 Aligned_cols=231 Identities=18% Similarity=0.202 Sum_probs=173.7
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-----CC-CCchh-HHhHHHHHHHhcCChHHHHHHHhcCCC--------
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRC-----GY-DSDVH-IGTALVDMYAKCGSLKHARLAYKRIST-------- 395 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-------- 395 (601)
-..++..+...|...|+++.|...++...+. |. .|... ..+.+...|...+++.+|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777899999999999999999987765 21 22222 233467788999999999999988761
Q ss_pred --C-ChhhHHHHHHHHHHcCChhhHHHHHHHHHHC-----CC-CccHH-hHHHHHHHHhccCchHHHHHHHHHHHh-c--
Q 045105 396 --P-DLVSQNAMLTAYAMHGHGKEGIAHFRRILAS-----GF-RPDHI-SFLSALSACVHAGSIKTGSEFFDLMAY-Y-- 462 (601)
Q Consensus 396 --~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-- 462 (601)
| -..+++.|...|.+.|++++|..++++..+- |. .|... .++.+...|+..+++++|..++....+ .
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2 2246788888999999999999888876541 21 23332 466777788999999999999843322 1
Q ss_pred CCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 463 DVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 463 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
-+.++ ..+++.|...|.+.|++++|.++++++ + ..+ ....++.+...|.+.+++++|.+++.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 23333 347889999999999999999999877 1 122 245677888899999999999999988776
Q ss_pred c----CCCC---CchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 529 L----EPNN---TGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 529 ~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
. .|++ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 4544 4688899999999999999999977664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-06 Score=86.84 Aligned_cols=143 Identities=15% Similarity=0.246 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
+..|+.+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.+++-.+++.+.++..-.|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 34566677777777777666655432 2345678888899999999999998888877776667655 568889
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 478 LSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
|++.++..+.++++. -||..-...+..-|...|.++.|.-++.. ..-|..|+..+...|.++.|...-
T Consensus 1176 yAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888776653 46777777778888888888777776643 334566777777777777776654
Q ss_pred HHH
Q 045105 558 QKM 560 (601)
Q Consensus 558 ~~~ 560 (601)
++.
T Consensus 1244 RKA 1246 (1666)
T KOG0985|consen 1244 RKA 1246 (1666)
T ss_pred hhc
Confidence 443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-08 Score=93.16 Aligned_cols=478 Identities=10% Similarity=-0.010 Sum_probs=272.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
-+..+.+-+..+.++..|.-+-++..... -|+..--.+.+++.-.|++++|..++..-.-. ..|..+.......+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 34455555555666666766666665432 33333344567777777777777766655332 34556666666677
Q ss_pred HhcCCcchHHHHHH----HHHHh-------c--CCCch-----------HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 045105 105 ARLQKLSLGKEFHG----YITRN-------G--FMSNP-----------FVVNGLVDVYRRCGDMLSALKIFSKFSIKNE 160 (601)
Q Consensus 105 ~~~~~~~~a~~~~~----~~~~~-------g--~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (601)
.+..++++|..++. .+..- + +.+|. ..+-.-...|......++|...+.+....|.
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~ 172 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA 172 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch
Confidence 77777777777665 11100 0 00110 0111111233334455666666665555554
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCCCChhhHHH
Q 045105 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS----LYDEAFSMFRDLLMRDGIEPTSFTFGS 236 (601)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 236 (601)
..|..+...-... .-.+.+-|+.+..........-....+..+.+.. .-+.....-.+.. ..+..-+......
T Consensus 173 ~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s-l~~l~~~~dll~~ 249 (611)
T KOG1173|consen 173 KCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES-LIGLAENLDLLAE 249 (611)
T ss_pred hhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh-hhhhhhcHHHHHH
Confidence 4444333221111 0011111111111000000000001111111100 0000000000000 0223334444444
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
-..-|...+++.++.++.+.+.+.. ++....+..-|.++...|+..+-..+-. ++.+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh----------~LV~------------ 306 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSH----------KLVD------------ 306 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHH----------HHHH------------
Confidence 4555667788889999888887764 4555555556667777776544332222 2221
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST- 395 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 395 (601)
..+..+.+|-++.--|...|+..+|++++.+....... -...|-.+...|+-.|..+.|...+....+
T Consensus 307 ----------~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 307 ----------LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred ----------hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 12334556666776777779999999999876644322 234567778888888888888877765442
Q ss_pred --CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc--CCCc----C
Q 045105 396 --PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY--DVKP----S 467 (601)
Q Consensus 396 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~ 467 (601)
....-+--+..-|.+.++..-|.+.|.+..... +-|+..++-+.-..-..+.+.+|..+|+..... .+.+ -
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 111122224445778899999999999988742 344556666666666778899999999554421 1111 2
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
..+++.|..+|.+.+++++|+..+++. ...| +..++.++.-.|...|+++.|.+.+.++..+.|++..+-..|..+..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345788889999999999999999987 3344 78889999999999999999999999999999987666666655443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=98.61 Aligned_cols=227 Identities=10% Similarity=0.013 Sum_probs=190.6
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChhh-HHHHHHHHHHc
Q 045105 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PDLVS-QNAMLTAYAMH 411 (601)
Q Consensus 335 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ll~~~~~~ 411 (601)
-..+.++|.+.|-+.+|...+....+.. |-+.+|..|-..|.+..++..|..+|.+-.. |..+| ...+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 3567889999999999999998877654 5666777889999999999999999988762 44444 45567778888
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI 491 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (601)
++.++|+++|+...+.. +.+.....++...|.-.++++.|+.+|+.+.+.|+. ++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999863 445557777778888899999999999999999964 5677888888888999999999888
Q ss_pred HhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 492 KKIP---MAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 492 ~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
++.- ..|+ ..+|-.+.....-.||+..|.+.++.+...+|++.+.++.|+-+-.+.|++++|+.+++...+..+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 8761 1343 457888888888899999999999999999999999999999999999999999999998876653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-06 Score=81.37 Aligned_cols=421 Identities=12% Similarity=0.076 Sum_probs=212.5
Q ss_pred CCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHH
Q 045105 6 GSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGML 82 (601)
Q Consensus 6 g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 82 (601)
|+-++|.+....... .+.++|+.+.-.+....++++|+..|..... ..+.|...|.-+.-.-++.|+++...+..
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 555555555555543 2334555554444445566666666666555 44455555555544445555555555555
Q ss_pred HHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhc-CCCchHHHHHHH------HHHHhcCCHHHHHHHHhh
Q 045105 83 FRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNG-FMSNPFVVNGLV------DVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 83 ~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~ 154 (601)
..+.+. .|+ ...|..+..+..-.|+...|..++++..+.. -.|+...+.... ....+.|..+.|.+.+..
T Consensus 133 ~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 133 NQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 555543 232 2345555555555666666666666666544 234444333222 223445666666665554
Q ss_pred cCCC--Cchh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHH-HHHhCCChhHHH-HHHHHHHHcCCCCC
Q 045105 155 FSIK--NEVS-CNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS-GYVDNSLYDEAF-SMFRDLLMRDGIEP 229 (601)
Q Consensus 155 ~~~~--~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~~~~~~a~-~~~~~~~~~~~~~p 229 (601)
.... |-.. -.+-...+.+.+++++|..++..++.. .||...|+.... ++.+-.+.-+++ .+|..... ..|
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~---~y~ 285 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE---KYP 285 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---cCc
Confidence 4422 2222 223344556667777777777776655 355444444433 332222222333 34433221 111
Q ss_pred Chhh-HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCC
Q 045105 230 TSFT-FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFE 308 (601)
Q Consensus 230 ~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~ 308 (601)
.... -..-++......-.+...+++....+.|+++ ++..+...|-.-. .+- +++++ +......+...|..
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~---k~~-~le~L--vt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPE---KVA-FLEKL--VTSYQHSLSGTGMF 356 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchh---HhH-HHHHH--HHHHHhhcccccCC
Confidence 1111 1111111222222333444555555555543 2222222222111 111 22210 00111111111110
Q ss_pred CChhhhhHHHHHHHHHhCCCCCCHh--HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCc-hhHHhHHHHHHHhcCChHH
Q 045105 309 PNVYTWNAMQLFSEMLSLDLTPDIY--TVGIILSACSSLATMERGKQVHAYAIRCGYDSD-VHIGTALVDMYAKCGSLKH 385 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 385 (601)
+-... ...-+|+.. |+-.++..+.+.|+++.|..+++..+.+- |+ +..|..-...+...|.+++
T Consensus 357 ~~~D~-----------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 357 NFLDD-----------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred Ccccc-----------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHH
Confidence 00000 001244443 45567788899999999999999888653 33 4455555677888999999
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHh--------HHHH--HHHHhccCchHHH
Q 045105 386 ARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHIS--------FLSA--LSACVHAGSIKTG 452 (601)
Q Consensus 386 a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------~~~l--~~~~~~~g~~~~a 452 (601)
|..++++..+ +|...-.--..-..+.++.++|..+.....+.|. +... |-.+ ..+|.+.|++..|
T Consensus 424 Aa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~A 501 (700)
T KOG1156|consen 424 AAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLA 501 (700)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHH
Confidence 9999998874 4443333455556778999999999888888774 3222 2222 3466777777777
Q ss_pred HHHHHHH
Q 045105 453 SEFFDLM 459 (601)
Q Consensus 453 ~~~~~~~ 459 (601)
++-|..+
T Consensus 502 LKkfh~i 508 (700)
T KOG1156|consen 502 LKKFHEI 508 (700)
T ss_pred HHHHhhH
Confidence 6655443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-07 Score=87.90 Aligned_cols=441 Identities=14% Similarity=0.041 Sum_probs=249.6
Q ss_pred CchhHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 7 SLDDAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 7 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
.+.+.++..+.+.+. +..+.....-.+...|+.++|.+....-.. +...+.+.|+.+.-.+....++++|+++|.
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 344444455555432 334444444456667888888888887666 666777888888888888888888888888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C
Q 045105 84 RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI-----K 158 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 158 (601)
.....+ +-|...+.-+.-.-++.|+++........+.+.. +.....|..++.++.-.|+...|..++++... +
T Consensus 100 nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 100 NALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 887653 3344556555555566777777777777766642 33445677777777778888888877766652 3
Q ss_pred CchhHHH------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeeh-HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh
Q 045105 159 NEVSCNT------IIVGYCENGNVAEARELFDQMEHLGVQRGIISW-NSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS 231 (601)
Q Consensus 159 ~~~~~~~------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 231 (601)
+...|.. -.....+.|..+.|++.+..-... ..|-..+ ..-...+.+.+++++|..++..+.. ..||.
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~---rnPdn 252 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE---RNPDN 252 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh---hCchh
Confidence 3333322 223455667777776666554322 1111111 1223455677777788877777765 44666
Q ss_pred hhHHHHHHHhc--ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCC
Q 045105 232 FTFGSVLIACA--DMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP 309 (601)
Q Consensus 232 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~ 309 (601)
.-|...+..+. -.+..+....+|....+.-........ +--......++....
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R--lplsvl~~eel~~~v----------------------- 307 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR--LPLSVLNGEELKEIV----------------------- 307 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh--ccHHHhCcchhHHHH-----------------------
Confidence 65555444333 122222222333333322110000000 000000000111100
Q ss_pred ChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHH----h----------CCCCchhHHh--HH
Q 045105 310 NVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR----C----------GYDSDVHIGT--AL 373 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~----------~~~~~~~~~~--~l 373 (601)
-..+..+.+.|+++--..+.++ +-.....+-..++...+.. . --+|++..|+ .+
T Consensus 308 -------dkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 308 -------DKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred -------HHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 1222333333443322222222 1111111111111111111 0 0145555554 46
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 374 VDMYAKCGSLKHARLAYKRISTPDLV---SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
+..|-+.|+++.|..+++.....++. .|-.=.+.+...|+.++|..++++..+.. .||...=.--..-..++...+
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 77788999999999999998853333 34444577899999999999999999875 666665445666777899999
Q ss_pred HHHHHHHHHHhcCCCcCch--------HHHHH--HHHhhhcCChHHHHHHHHhC
Q 045105 451 TGSEFFDLMAYYDVKPSLK--------HYTCM--VDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~ 494 (601)
+|.++.....+.|. +.. +|-.+ .++|.+.|++.+|++-|..+
T Consensus 457 eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 99999987777775 221 22222 34577888888887766554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-07 Score=85.26 Aligned_cols=259 Identities=12% Similarity=0.052 Sum_probs=152.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC----------
Q 045105 261 GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP---------- 330 (601)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p---------- 330 (601)
-++.|......+..++...|+.++|...|+ ... ..|..+..+++++.-+......-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe----------~~~----~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFS----------STL----CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHH----------HHh----hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 356667777778888888888888887777 444 44445555555554443322110
Q ss_pred ------CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhH
Q 045105 331 ------DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQ 401 (601)
Q Consensus 331 ------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 401 (601)
+...|-.-.......++++.|+.+-++.++.... +...+-.-...+...|++++|.-.|.... +-+..+|
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIY 371 (564)
T ss_pred HhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHH
Confidence 0111111112223345666666666665554322 23333333345666777777777776554 3456777
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHH-HHHh-ccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL-SACV-HAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLL 478 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 478 (601)
..|+.+|...|++.+|..+-++..+. ++.+..+...+. ..|. ...--++|.++++.- ..+.|+ ....+.+.+.+
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~--L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS--LKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh--hccCCccHHHHHHHHHHH
Confidence 77888888777777777776665553 344445555442 2222 233345666666542 223454 23455666777
Q ss_pred hhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 479 SRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
...|+.++++.++++. ...||....+.|...++..+.+.+|.+.|..+...+|++..+.
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 7777777887777766 4457777777777777777777778887777777777654443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-09 Score=94.87 Aligned_cols=194 Identities=11% Similarity=0.029 Sum_probs=93.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR 140 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 140 (601)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444443321 1122333334444444444444444444444432 222333444444444
Q ss_pred hcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 141 RCGDMLSALKIFSKFSIK-----NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
..|++++|.+.+++.... ....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 445555555544444311 12234444555555666666666666655443 223345555666666666666666
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
..+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666542 223344444555555566666666666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-07 Score=90.00 Aligned_cols=210 Identities=15% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHH
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGI 418 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 418 (601)
|..|.+.|+|+.|.++-.+. .|....+..|.+-..-+-++|++.+|.+++-.+..|+. .|..|-++|..+..+
T Consensus 798 i~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMI 870 (1636)
T ss_pred HHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHH
Confidence 34444444444444433221 12233344444444555566777777777766666654 356677777777776
Q ss_pred HHHHHHHHCCCCccH--HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 045105 419 AHFRRILASGFRPDH--ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPM 496 (601)
Q Consensus 419 ~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (601)
++.++- .|+. .|...+..-+...|++..|..-|-... -|.+-+++|-..+.|++|.++-+.-+
T Consensus 871 rlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakteg- 935 (1636)
T KOG3616|consen 871 RLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEG- 935 (1636)
T ss_pred HHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccc-
Confidence 666543 2332 345555566666777777766653322 24455566666666666666655442
Q ss_pred CCCHHHHHHHHHH------------------------HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 497 APDSVMWGALLGG------------------------CVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 497 ~~~~~~~~~l~~~------------------------~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
-.|..-...++++ .+..+.++-|.++-+...+ ...+.....++..+...|++++
T Consensus 936 g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~ed 1013 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFED 1013 (1636)
T ss_pred cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhh
Confidence 1121111111211 1222333333333222222 2256677788888888999999
Q ss_pred HHHHHHHHhhcCCccCCCcc
Q 045105 553 LARTRQKMKDRRMHKSPGCS 572 (601)
Q Consensus 553 A~~~l~~~~~~~~~~~~~~~ 572 (601)
|-+.+-+..+..--....|.
T Consensus 1014 askhyveaiklntynitwcq 1033 (1636)
T KOG3616|consen 1014 ASKHYVEAIKLNTYNITWCQ 1033 (1636)
T ss_pred hhHhhHHHhhcccccchhhh
Confidence 98776665554433333443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-07 Score=90.02 Aligned_cols=251 Identities=13% Similarity=0.055 Sum_probs=152.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-hc-
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA-RL- 107 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~- 107 (601)
...+...|++++|++.++.-.. ...............+.+.|+.++|..+|..+..+ .|+...|...+..+. ..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc
Confidence 3456677888888888877544 33344455566777777888888888888888776 455555555444443 11
Q ss_pred ----CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH-HHHHHHhhcCCCCc-hhHHHHHHHHHhcCCHHHHHH
Q 045105 108 ----QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML-SALKIFSKFSIKNE-VSCNTIIVGYCENGNVAEARE 181 (601)
Q Consensus 108 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 181 (601)
.+.+....+++++...- |.......+.-.+....++. .+..++..+..+.+ .+|+.+-..|......+-..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 23455566666665442 22222211111111111121 22233333333333 345555555554444444444
Q ss_pred HHHHHHhc----CC----------CCCe--eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhccc
Q 045105 182 LFDQMEHL----GV----------QRGI--ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADM 244 (601)
Q Consensus 182 ~~~~m~~~----g~----------~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 244 (601)
++...... +- +|+. .++.-+...|-..|++++|++.+++.+. ..|+ +..|..-.+.+...
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHC
Confidence 54444321 11 2333 2445567778889999999999998876 3455 45666777788899
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 245 NSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
|++++|.+.++...... ..|..+-+..+..+.++|+.++|.+++.
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999988776 4567777788888899999999988887
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-07 Score=90.13 Aligned_cols=127 Identities=19% Similarity=0.128 Sum_probs=100.7
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 045105 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH 513 (601)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 513 (601)
|......+.+.+..++|...+.+.... .+.....|......+...|.+++|.+.|... -+.| ++.+..++...+...
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 444556677778888887666543332 3444556666667788889999999888766 5677 567888899999999
Q ss_pred CChhHHHH--HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 514 GNLEFGQI--AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 514 g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
|+...|.. ++..+.+.+|.++.+|..++.++.+.|+.++|.+-|....+-
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99888888 999999999999999999999999999999999999877543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-09 Score=86.84 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 478 (601)
....|..+|...|++..|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+.. +-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455777899999999999999999986 5655 588888899999999999999996655543 34566888888899
Q ss_pred hhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 479 SRAGELGEAYEFIKKIPMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
|..|++++|...|++.-..|. ..+|..+.....+.|+.+.|.+.+++..+.+|+.+.....++......|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998843443 4567777777778899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 045105 555 RTRQKMKDRRM 565 (601)
Q Consensus 555 ~~l~~~~~~~~ 565 (601)
.++++...++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999888776
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-09 Score=106.11 Aligned_cols=262 Identities=10% Similarity=-0.035 Sum_probs=173.2
Q ss_pred CCccchHHHHHHHHh-----cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh---------cCChHHHHHHHHHHH
Q 045105 21 RDCVSWNSVVTACAA-----NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ---------NGYDEEAIGMLFRMQ 86 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~ 86 (601)
.+...|...+.+... .++.++|+.+|++..+ ..|-+...|..+..++.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 556666666665322 2468899999999887 444556667666655442 244788999999888
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-chhH
Q 045105 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KN-EVSC 163 (601)
Q Consensus 87 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~ 163 (601)
+.. +-+...+..+...+...|++++|...++...+.+ +.+...+..+..++...|++++|...+++... |+ ...+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 763 3355677777777888899999999999998875 44566778888888899999999999988763 32 2233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHhc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF-GSVLIACA 242 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll~~~~ 242 (601)
..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++.. ..|+..+. +.+...+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHh
Confidence 444555667888999999998887654222344466677888889999999999988654 34444443 33444556
Q ss_pred ccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH
Q 045105 243 DMNSLRKGKEIHALAIALGL-QSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294 (601)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 294 (601)
..| +.+...++.+.+..- .+....+ +-..|.-.|+.+.+..+ ..+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 666 467776666654321 2222222 33334456666666655 44433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-05 Score=78.25 Aligned_cols=514 Identities=11% Similarity=0.075 Sum_probs=303.8
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh---cC-ChHHHHHHHHHHHHcCCC---CCHh
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ---NG-YDEEAIGMLFRMQAEGLE---PNAR 95 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---~~-~~~~a~~~~~~m~~~~~~---p~~~ 95 (601)
+.+|-..|..-.. .-..+-.-+|+...+ ..+-+...|...+..-.. .. -.+.+...++.-.++++. --..
T Consensus 27 vk~W~RYIe~k~~-sp~k~~~~lYERal~--~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpR 103 (835)
T KOG2047|consen 27 VKCWLRYIEHKAG-SPDKQRNLLYERALK--ELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPR 103 (835)
T ss_pred HHHHHHHHHHHcc-CChHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCH
Confidence 3455555554433 223445557777766 455666666655532211 10 112222222222111111 1224
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHh-cCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 045105 96 TLSSVLPACARLQKLSLGKEFHGYITRN-GFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG 174 (601)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 174 (601)
.|...+..+...+++......|+..+.. .+.....+|...+......+-++-+..++++...-++..-+-.|..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 5666677777888888888888877654 344455677778887778888889999998888777777888888899999
Q ss_pred CHHHHHHHHHHHHhc------CCCCCeeehHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCCh--hhHHHHHHHhcc
Q 045105 175 NVAEARELFDQMEHL------GVQRGIISWNSMISGYVDNSLYD---EAFSMFRDLLMRDGIEPTS--FTFGSVLIACAD 243 (601)
Q Consensus 175 ~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~ 243 (601)
++++|-+.+...... ..+.+...|..+....+++.+.- ....+++.+. +.-||. ..+..|...|.+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---RRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---ccCcHHHHHHHHHHHHHHHH
Confidence 999998888877532 11345556666665555544322 2334444433 233443 457778888889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhch----hcCCCCChhhhhH-HH
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMK----EDGFEPNVYTWNA-MQ 318 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~-~~ 318 (601)
.|.++.|..+|++....-.. ..-+..+-++|+. +++..-.. .|. +.|-..+...+.. +.
T Consensus 261 ~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~-------------FEE~~~~~-~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQ-------------FEESCVAA-KMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred hhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHH-------------HHHHHHHH-HHhhhhhcccChhhhhhHHHHHH
Confidence 99999999888887765322 2222233333332 11110000 111 1111112222211 33
Q ss_pred HHHHHHhCC-----------CCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhC-C----CCchhHHhHHHHHHHhcCC
Q 045105 319 LFSEMLSLD-----------LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCG-Y----DSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 319 ~~~~~~~~~-----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~g~ 382 (601)
.|+.+...+ -+.++.++..-+ -...|+..+-...+.++++.- . ..-...+..+...|-..|+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333333222 122233333322 233456667777777776541 1 1123456778888999999
Q ss_pred hHHHHHHHhcCCCCChhhHHHHH-------HHHHHcCChhhHHHHHHHHHHCCCC----------c-------cHHhHHH
Q 045105 383 LKHARLAYKRISTPDLVSQNAML-------TAYAMHGHGKEGIAHFRRILASGFR----------P-------DHISFLS 438 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~ll-------~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ 438 (601)
++.|..+|++..+.+-.+.+-|. ..-.++.+++.|+++.++....--. | +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 99999999998865444444443 4445678899999988887542111 1 1223555
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C-CC-CC-HHHHHHHHHHHHh--
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P-MA-PD-SVMWGALLGGCVS-- 512 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~-~~-~~~~~~l~~~~~~-- 512 (601)
.++.-...|-++....+|+.+.+..+-....+. .....+....-++++.+++++- + ++ |+ ...|+..+..+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 666666778888999999888877654332222 2333445666789999999886 2 22 44 4578887777654
Q ss_pred -cCChhHHHHHHHHHHhcCCCCC--chHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 513 -HGNLEFGQIAADRLIELEPNNT--GNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 513 -~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
....+.|..+++++.+.-|+.. ..|...+..-.+-|....|+.++++.-
T Consensus 562 gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2368999999999999888532 344445555556799999999998853
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.3e-07 Score=86.67 Aligned_cols=171 Identities=9% Similarity=0.074 Sum_probs=104.5
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 417 (601)
.+.+......|.+|..+++.+..... ....|..+.+.|+..|+++.|.++|-+. ..++-.|..|.+.|++..|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHH
Confidence 34455666778888888877766543 2344666777888888888888888553 3455667788888888888
Q ss_pred HHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 045105 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (601)
.++-.+.. |.......|..-..-+-..|++.+|.++|-.+. .|+ .-+.+|-+.|..++.+++..+..-.
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 87765543 223333455555555667777777777763321 232 2355666777777777777665212
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 045105 498 PDSVMWGALLGGCVSHGNLEFGQIAADRL 526 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 526 (601)
.-..|...+..-+-..|+...|++.+-++
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 22334445555555556665555554433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-08 Score=100.14 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=163.5
Q ss_pred CCCCChhhHHHHHHHHhh-----cCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHH---------hcCCcchHHHHHH
Q 045105 54 NETPNLVSWSAVIGGFTQ-----NGYDEEAIGMLFRMQAEGLEPNA-RTLSSVLPACA---------RLQKLSLGKEFHG 118 (601)
Q Consensus 54 ~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~ 118 (601)
..+.+...|...+.+... .+++++|..+|++..+. .|+. ..|..+..++. ..+++++|...++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 345667777777666422 23467899999999875 5543 44555544433 2234788999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe
Q 045105 119 YITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS--IK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI 195 (601)
Q Consensus 119 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 195 (601)
...+.. +.+...+..+..++...|++++|...|++.. .| +...+..+...+...|++++|...+++....... +.
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 998875 4466788888888899999999999999876 33 4567888899999999999999999999877522 23
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045105 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVE 274 (601)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 274 (601)
..+..++..+...|++++|...+++... . ..|+ ...+..+..++...|+.++|...+..+.... +.+....+.+..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~-~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~ 483 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRS-Q-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYA 483 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHH-h-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHH
Confidence 3344455567778999999999998775 2 2343 3345666677888999999999998875542 223445566666
Q ss_pred HHHhcCCHHHHHHHhhhH
Q 045105 275 MYCRYQDLVAAQMAFDEI 292 (601)
Q Consensus 275 ~~~~~g~~~~a~~~~~~~ 292 (601)
.|+..|+ .|...++.+
T Consensus 484 ~~~~~g~--~a~~~l~~l 499 (553)
T PRK12370 484 EYCQNSE--RALPTIREF 499 (553)
T ss_pred HHhccHH--HHHHHHHHH
Confidence 7777774 666666644
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=94.99 Aligned_cols=189 Identities=15% Similarity=0.086 Sum_probs=94.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-HHhHHHHHHHHh
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-HISFLSALSACV 444 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 444 (601)
.|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|...|++.++. .|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34445555566666666666665544 233455666666666666666666666666653 343 345555555566
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P-MAPDSVMWGALLGGCVSHGNLEFGQIA 522 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 522 (601)
..|++++|.+.++...+. .|+..........+...++.++|...|++. . ..|+...| .......|+...+ +.
T Consensus 144 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE-TL 217 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-HH
Confidence 666666666666444332 232221111122233445566666666443 1 12222111 1122223443332 23
Q ss_pred HHHHH-------hcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 523 ADRLI-------ELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 523 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
++.+. +..|+.+.+|..++.++...|++++|...+++..+..+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33332 23344455666666666666666666666666655543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=92.97 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=105.1
Q ss_pred CeeehHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CCCChhhH-HHHHHHhcccCCHHHHHHHHHHHHHc-----CC
Q 045105 194 GIISWNSMISGYVDNSLYDEAFSMFRDLLMR----DG-IEPTSFTF-GSVLIACADMNSLRKGKEIHALAIAL-----GL 262 (601)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~ 262 (601)
-..+...+...|...|+++.|..+++..++. .| ..|...+. +.+...|...+++++|..+|+.+... |-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666888899999999999998877652 12 13333333 23556788889999999999888653 21
Q ss_pred --CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC-CCCH-hHHHHH
Q 045105 263 --QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL-TPDI-YTVGII 338 (601)
Q Consensus 263 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~p~~-~~~~~l 338 (601)
+.-..+++.|..+|.+.|++++|...+++.-++. .. ..|. .|.. .-++.+
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~------------------------~~--~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY------------------------EK--LLGASHPEVAAQLSEL 331 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH------------------------HH--hhccChHHHHHHHHHH
Confidence 2223566777888999999999999888432222 22 0011 1222 235556
Q ss_pred HHHhcCCCchhhHHHHHHHHHHh---CCCC----chhHHhHHHHHHHhcCChHHHHHHHhcC
Q 045105 339 LSACSSLATMERGKQVHAYAIRC---GYDS----DVHIGTALVDMYAKCGSLKHARLAYKRI 393 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (601)
...|+..++++.|..++....+. -+.+ -..+++.|...|.+.|++++|..+++++
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66677777777777777654432 1111 1234445555555555555555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-06 Score=81.40 Aligned_cols=221 Identities=12% Similarity=0.029 Sum_probs=125.3
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCc--hhHH-hHHHHHHHhcCChHH--HHHHHhcCCC--------------CCh
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSD--VHIG-TALVDMYAKCGSLKH--ARLAYKRIST--------------PDL 398 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~~l~~~~~~~g~~~~--a~~~~~~~~~--------------~~~ 398 (601)
+.-.+-..|+..+|..++...++....-. ..+. |.|+ ++....++-+ +...++.... ...
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33445667999999999999888765322 1222 2222 2222222211 2222222211 111
Q ss_pred hhHH-HHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh--ccCchHHHHHHHHHHHhcCCCcCchHHHHHH
Q 045105 399 VSQN-AMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV--HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMV 475 (601)
Q Consensus 399 ~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 475 (601)
...| .++..|. +..+.+.++...... ..|.. .+.+++..+. +...+..+..++....+....-+..+.-..+
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHH
Confidence 1122 2222222 223333333322221 23332 3444544433 2235677777776544443222344555667
Q ss_pred HHhhhcCChHHHHHHHH--------hCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC---CCCchHHH
Q 045105 476 DLLSRAGELGEAYEFIK--------KIP-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL----EP---NNTGNYVM 539 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~--------~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~ 539 (601)
......|+++.|++++. .++ +.-.+.+..++...+.+.++.+.|..++..++.- .+ ....++..
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 77889999999999998 442 3345667778888888888888899888888753 12 12334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 540 LANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 540 l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++..-.+.|+-++|..+++++.+..
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhC
Confidence 6666678899999999999998754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-06 Score=86.87 Aligned_cols=300 Identities=12% Similarity=0.083 Sum_probs=151.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHH-hC-
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFSI--KNE-VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYV-DN- 208 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~- 208 (601)
-....+...|++++|++.++.... .|. .........+.+.|+.++|..+|..+...+ |+-..|...+..+. -.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 344566788999999999877653 243 345677788888999999999999998875 55555544444333 22
Q ss_pred ----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 045105 209 ----SLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSL-RKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 209 ----~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (601)
...+....+|+++.. .-|.......+.-.+..-..+ ..+...+..+...|+++ +++.|-..|....+..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 245667778877654 235555444443223221222 23445556666666433 4444444454333332
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCH--hHHHHHHHHhcCCCchhhHHHHHHHHHHh
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDI--YTVGIILSACSSLATMERGKQVHAYAIRC 361 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 361 (601)
-...++. .....+...|..+... ....-.|+. .++..+...+...|++++|..+++..+++
T Consensus 161 ~i~~l~~------~~~~~l~~~~~~~~~~-----------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 161 IIESLVE------EYVNSLESNGSFSNGD-----------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHH------HHHHhhcccCCCCCcc-----------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2222222 1111111111111000 001112333 23334445555666666666666666654
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHh---
Q 045105 362 GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHIS--- 435 (601)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--- 435 (601)
... .+..|..-...|-+.|++.+|...++.... .|...-+-....+.+.|+.++|..++......+..|-...
T Consensus 224 tPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 311 244555555555566666666655555543 2223333444455555666666665555555443222111
Q ss_pred ---H--HHHHHHHhccCchHHHHHHHHHH
Q 045105 436 ---F--LSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 436 ---~--~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
| .-...+|.+.|++..|++.|..+
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 11234455555555555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-06 Score=83.10 Aligned_cols=308 Identities=13% Similarity=0.096 Sum_probs=166.4
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcc
Q 045105 32 ACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLS 111 (601)
Q Consensus 32 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 111 (601)
.....|..++|..++++.++ |..|=..|-..|.|++|.++-+.--+- .-..||.....-+...++.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHH
Confidence 34556777888888877655 455556667778888888776654321 12235555555566666776
Q ss_pred hHHHHHHHH----------HHhc---------CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----------------
Q 045105 112 LGKEFHGYI----------TRNG---------FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---------------- 156 (601)
Q Consensus 112 ~a~~~~~~~----------~~~g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------- 156 (601)
.|++.|+.. +... -..|...|.--....-..|+.+.|+.++....
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 666665432 1111 12233444444444445688888887776654
Q ss_pred --------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCC---------------hhH
Q 045105 157 --------IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSL---------------YDE 213 (601)
Q Consensus 157 --------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---------------~~~ 213 (601)
..|...+..+.+.|-..|++.+|..+|.+... +...|+.|-.++. .-.
T Consensus 956 kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~ 1026 (1416)
T KOG3617|consen 956 KAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVS 1026 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHH
Confidence 11334455556666666666666666655431 2222222222111 112
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHH--------HHHHc--CCCCchhHHHHHHHHHHhcCCHH
Q 045105 214 AFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHA--------LAIAL--GLQSDTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 214 a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 283 (601)
|-..|++ .|. -+...+..|-+.|.+.+|.++-- ++... ....|+...+.-.+.|+...+++
T Consensus 1027 aArYyEe----~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1027 AARYYEE----LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred HHHHHHH----cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 2222222 111 11122234556666666554311 11222 33456788888888999999999
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCC-CCCCH----hHHHHHHHHhcCCCchhhHHHHHHHH
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLD-LTPDI----YTVGIILSACSSLATMERGKQVHAYA 358 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~ 358 (601)
+|..++-...+....+.-....|+.... ++-+.|.... -.|+. ..+..+...|.+.|.+..|.+-|.+.
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vte------e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTE------EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhH------HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999988777766666655544443221 1111221111 22332 34666677888888888877666543
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCChHH
Q 045105 359 IRCGYDSDVHIGTALVDMYAKCGSLKH 385 (601)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (601)
-.. ...+.++.+.|+.++
T Consensus 1172 GdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1172 GDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred hhH---------HHHHHHHHhcCCcce
Confidence 221 234666777777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-08 Score=86.35 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=186.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 045105 63 SAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRC 142 (601)
Q Consensus 63 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 142 (601)
+.+..+|.+.|.+.+|.+.++.-.+. .|-..||..|-+.|.+..++..|+.++.+-++. ++.++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999988876 677789999999999999999999999988775 455666667788889999
Q ss_pred CCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHH
Q 045105 143 GDMLSALKIFSKFSIK---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFR 219 (601)
Q Consensus 143 ~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 219 (601)
++.++|.++++...+. ++.+...+...|--.++.+-|+..|..+.+.|+ .+...|+.+.-+|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988733 666777777888889999999999999999995 677888889889999999999999999
Q ss_pred HHHHcCCCCCCh--hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 220 DLLMRDGIEPTS--FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 220 ~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.... .-..|+. ..|-.+-......|++..|.+.|.....++ ..+...+|.|.-.-.+.|++++|..++.
T Consensus 383 RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 383 RALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8876 3344443 345556666778899999999999888765 3456677888888889999999999888
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-06 Score=73.63 Aligned_cols=316 Identities=10% Similarity=-0.003 Sum_probs=186.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV-LPAC 104 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~ 104 (601)
+++.+..+.+..++++|++++..-.+ ..+.+....+.|..+|-...++..|-++++++-.. .|...-|... ..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 56677778888899999999888776 44557888888888888899999999999998764 5665555432 3456
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHH--HHHhcCCHHHHHHHHhhcC-CCCchhHHHHHHHHHhcCCHHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVD--VYRRCGDMLSALKIFSKFS-IKNEVSCNTIIVGYCENGNVAEARE 181 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~ 181 (601)
.+.+.+..|+++...|... ++...-..-+. .....+|+..+..+++..+ +.+..+.+......-+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 6677888888888777543 11111111112 2234677888888888777 3555555555556667788888888
Q ss_pred HHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH----HHHHHHhcccCCH-HHHHHHHHH
Q 045105 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF----GSVLIACADMNSL-RKGKEIHAL 256 (601)
Q Consensus 182 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~ll~~~~~~~~~-~~a~~~~~~ 256 (601)
-|+...+-+--.+...||.-+ ++.+.++++.|++...++.. .|+.-.+..= .-.+.+- ..|+. ..+..-+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sal-- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSAL-- 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchh-cccchHHHHHHHH--
Confidence 887776644334445566443 44566778888888877776 5553221110 0000000 00000 0000000
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 257 AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
...+|.-...+.+.|+++.|.+.+. +|+.+. .-..|+.|..
T Consensus 241 ---------~eAfNLKaAIeyq~~n~eAA~eaLt----------DmPPRa--------------------E~elDPvTLH 281 (459)
T KOG4340|consen 241 ---------VEAFNLKAAIEYQLRNYEAAQEALT----------DMPPRA--------------------EEELDPVTLH 281 (459)
T ss_pred ---------HHHhhhhhhhhhhcccHHHHHHHhh----------cCCCcc--------------------cccCCchhhh
Confidence 1122333334567788888887777 676211 1233444444
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC
Q 045105 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS 394 (601)
Q Consensus 337 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (601)
.+.-. -..+++....+-+..+...+. ....+|..++-.||+..-++-|-+++-+-.
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 33221 122334444444455554432 345677777778888887888777775544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-05 Score=80.89 Aligned_cols=458 Identities=10% Similarity=-0.005 Sum_probs=231.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 045105 27 NSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACAR 106 (601)
Q Consensus 27 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (601)
+.|..-.-+.++..-.+..++...+. ...+..+||.|...|..+++-.+-. . +-+..-=+....-||.
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~e--G~~d~a~hnAlaKIyIDSNNnPE~f------L----keN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQE--GSQDPATHNALAKIYIDSNNNPERF------L----KENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc--cCcchHHHhhhhheeecCCCChHHh------c----ccCCcchhhHHhhhhc
Confidence 33444455556666666666666663 3467778888888777655433211 1 1111111222334444
Q ss_pred cCCcchHHHHHHHHH----HhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-----------------CCCchhHHH
Q 045105 107 LQKLSLGKEFHGYIT----RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS-----------------IKNEVSCNT 165 (601)
Q Consensus 107 ~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~ 165 (601)
.+++.-|.-.|+.=. -.++....+.|....+.+.+..|.+--.+++.+-. ..|+.....
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 444433322221100 00011222344444555555555444444442211 125555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC--CCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 166 IIVGYCENGNVAEARELFDQMEHLG--VQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
-+.++...+-..+-.++++.+.-.. +.-+...-|.|+-...+. +..++.+..+++-. --.|+ +...+..
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdn--yDa~~------ia~iai~ 1060 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDN--YDAPD------IAEIAIE 1060 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhcc--CCchh------HHHHHhh
Confidence 7777777777778788877775322 111222233444443333 34455555555421 11122 1222333
Q ss_pred cCCHHHHHHHHHHHHHcC---------------------CCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 244 MNSLRKGKEIHALAIALG---------------------LQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
.+-+++|..+|+.....+ -...+.+|+.+..+-.+.|.+.+|.+-|-
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi------------ 1128 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI------------ 1128 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH------------
Confidence 344555555554331100 01123344555555555554444443333
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
-.-|+..|.-++..+.+.|.+++-.+++....+..-.|.+. +.|+-+|++.++
T Consensus 1129 -------------------------kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1129 -------------------------KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred -------------------------hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 12466779999999999999999999998888777666655 478889999999
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHH--------------------CCCCccHHhHHHHHHH
Q 045105 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA--------------------SGFRPDHISFLSALSA 442 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--------------------~~~~p~~~~~~~l~~~ 442 (601)
+.+-+.++. .||......+..-|...|.++.|.-+|..... ..-..+..||.-+-.+
T Consensus 1182 l~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1182 LTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred HHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 888776653 24444444444444444444444433332111 0001233455555555
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
|...+.+.-|. |...++-....-..-|++-|...|-+++.+.+++.. |++ .....|.-|.-.|.+- ++++..
T Consensus 1259 Cvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred HhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 55544433221 112222233334556667777777777777777654 433 2444555555455543 356666
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
+.++.++..-- .-.+++++-++--|.|..-++.
T Consensus 1333 EHl~LFwsRvN-----ipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1333 EHLKLFWSRVN-----IPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred HHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654321 1234455555555665555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-06 Score=83.31 Aligned_cols=401 Identities=13% Similarity=0.121 Sum_probs=219.7
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-eeehHHHHHHHHhCCChh
Q 045105 137 DVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRG-IISWNSMISGYVDNSLYD 212 (601)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~ 212 (601)
.+.+..|+++.|...|.+.. ++|-+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567889999999887654 346677888888899999998888766665544 454 346888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCCh-hhHHHHHHHhcccCCHHHHH-HHHHHH-HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHh
Q 045105 213 EAFSMFRDLLMRDGIEPTS-FTFGSVLIACADMNSLRKGK-EIHALA-IALGLQSDTFVGGALVEMYCRYQDLVAAQMAF 289 (601)
Q Consensus 213 ~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~-~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (601)
+|+.-|.+-+. ..|+. ..++-+..++ ..+.+. +.+..- .-.++..++.+ ..+.....+..-+..+
T Consensus 88 eA~~ay~~GL~---~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t-----~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLE---KDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLT-----NYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHhh---cCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhh-----hhhhccHHHHHHHHHh
Confidence 99998887665 34443 3444454444 111111 100000 00111112211 1121111111111111
Q ss_pred hhH----------HHHHHHHhhchh--------cCCCCChhhhh-------HHHHHHHHHh-CCCCCCHhHHHHHHHHhc
Q 045105 290 DEI----------ENIENLLGKMKE--------DGFEPNVYTWN-------AMQLFSEMLS-LDLTPDIYTVGIILSACS 343 (601)
Q Consensus 290 ~~~----------~~~~~~~~~~~~--------~g~~~~~~~~~-------~~~~~~~~~~-~~~~p~~~~~~~li~~~~ 343 (601)
... ....+....+.. .|..+....-+ ......++.+ ...+--..-...+.++..
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 100 000000000000 00000000000 0000000000 000000112344555566
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHH-------HHHHHHHHcCC
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDL---VSQN-------AMLTAYAMHGH 413 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~-------~ll~~~~~~~~ 413 (601)
+..+++.+.+-+....+.. -++.-++....+|...|.+......-+...+... .-|+ .+..+|.+.++
T Consensus 236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 6666777777776666655 3445555666667777776666555444332111 1122 23345666677
Q ss_pred hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch-HHHHHHHHhhhcCChHHHHHHHH
Q 045105 414 GKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK-HYTCMVDLLSRAGELGEAYEFIK 492 (601)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 492 (601)
++.++..|++.+.....|+.. .+....+++......... +.|... -...=...+.+.|++..|++.+.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 888888888866654444432 122233444444322222 223221 11122556778899999999888
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 493 KI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 493 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++ ...| |...|..-.-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.+++.++.+
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87 3345 677788888888889999999999999999999888888888888888999999999888877666
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-07 Score=75.83 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=137.5
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAM 410 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~ 410 (601)
+...+.-.|...|+...|..-+++..+... .+..++..+...|.+.|+.+.|.+.|++.. +.+....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 344556677788888888888888777652 355666677777888888888888887665 3455677777777888
Q ss_pred cCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHH
Q 045105 411 HGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 489 (601)
+|++++|...|++....-.-|.. .||..+.-+..+.|+.+.|...|+...+.. +-...+.-.+.+...+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 88888888888887775433333 367777777778888888888885544432 2223455667777778888888887
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 490 FIKKI--PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 490 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
+++.. ...++..+..-.+..-...||.+.+.+.=.++....|..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 77766 223566666666666667788877777777777777743
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=86.40 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=102.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh----ccCc
Q 045105 373 LVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV----HAGS 448 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~ 448 (601)
....+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ....
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 334566778888888888765 45566666778888888888888888888764 3443 3333444332 2336
Q ss_pred hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 045105 449 IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNL-EFGQIAADR 525 (601)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 525 (601)
+.+|..+|+++.+ ..++++.+.+.+..+....|++++|.+++++. ...| ++.+...++......|+. +.+.+.+.+
T Consensus 183 ~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 7888888877544 45677777777888888888888888887765 3334 455566666666666665 667778888
Q ss_pred HHhcCCCCC
Q 045105 526 LIELEPNNT 534 (601)
Q Consensus 526 ~~~~~p~~~ 534 (601)
+.+..|+++
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 777777544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-06 Score=74.04 Aligned_cols=416 Identities=14% Similarity=0.085 Sum_probs=256.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH-HHH
Q 045105 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEP-NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG-LVD 137 (601)
Q Consensus 60 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~ 137 (601)
--+.+++..+.+..+++.|++++..-.++ .| +....+.|..+|....++..|-..++++-.. .|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 34777888888999999999999988876 44 6667777888888999999999999998775 444444432 245
Q ss_pred HHHhcCCHHHHHHHHhhcCCC-CchhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 138 VYRRCGDMLSALKIFSKFSIK-NEVSCNTIIVG--YCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
.+.+.+.+..|+++...|... +...-..-+.+ .-..+++..+..++++....| +..+.+.......+.|+++.|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 566788999999999988864 32222222333 335788888888888876433 344444555566789999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 294 (601)
++-|+...+-.|..|- ..|+..+ +..+.++.+.|.+...++.++|++..+..--
T Consensus 164 vqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI------------------------ 217 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI------------------------ 217 (459)
T ss_pred HHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc------------------------
Confidence 9999999887777764 4565554 4557788888999998888888654332210
Q ss_pred HHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHH
Q 045105 295 IENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV 374 (601)
Q Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (601)
.|.-.| ||..+. .+. ...-+++ -+..+|.-.
T Consensus 218 ------Gm~teg--iDvrsv---------------gNt--~~lh~Sa------------------------l~eAfNLKa 248 (459)
T KOG4340|consen 218 ------GMTTEG--IDVRSV---------------GNT--LVLHQSA------------------------LVEAFNLKA 248 (459)
T ss_pred ------cceecc--Cchhcc---------------cch--HHHHHHH------------------------HHHHhhhhh
Confidence 111111 111100 000 0000000 112334444
Q ss_pred HHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch
Q 045105 375 DMYAKCGSLKHARLAYKRIST-----PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449 (601)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (601)
..+.+.|+++.|.+.+-.|++ .|++|...+.-.= ..+++.+..+-+.-++... +--..||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 556788999999999988883 5667766553221 2355666777777777653 22346899999999999999
Q ss_pred HHHHHHHHHHHhcCCC-cCchHHHHHHHHhhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCh----hHHHHH
Q 045105 450 KTGSEFFDLMAYYDVK-PSLKHYTCMVDLLSRA-GELGEAYEFIKKIPMAPDSVMWGALLGGC-VSHGNL----EFGQIA 522 (601)
Q Consensus 450 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~----~~a~~~ 522 (601)
+.|..++.+-...... .+...|+ |++++... -..++|.+-++.+....-...-...+..- .+..+- ..+++-
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~ 405 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE 405 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9998887441111111 1222333 44555443 35677766665552111111111111111 122222 223344
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 523 ADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
++...++ -..+...-+++|++..++..+.++|+.-.+.
T Consensus 406 Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 406 YDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 4555554 2236667788999999999999999865543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00011 Score=73.34 Aligned_cols=31 Identities=6% Similarity=0.091 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..|..|+..+.+..+|..|.+.+++|+.+.+
T Consensus 1331 ~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1331 RLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 4677788899999999999999999987764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-05 Score=76.78 Aligned_cols=378 Identities=13% Similarity=0.050 Sum_probs=222.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 045105 158 KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237 (601)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 237 (601)
.+...|..+.-++...|+++.+-+.|++....- -.....|+.+-..|...|.-..|+.+++.......-+++...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 366678888899999999999999999986432 3455678888889999999999999998765422222233333333
Q ss_pred HHHhc-ccCCHHHHHHHHHHHHHc--CC--CCchhHHHHHHHHHHhc----CCHHHHHHHhhhHHHHHHHHhhchhcCCC
Q 045105 238 LIACA-DMNSLRKGKEIHALAIAL--GL--QSDTFVGGALVEMYCRY----QDLVAAQMAFDEIENIENLLGKMKEDGFE 308 (601)
Q Consensus 238 l~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~g~~ 308 (601)
-..|. +.+.++++..+-.++... +. ...+..+..+.-+|... ....+-.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~---------------------- 457 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD---------------------- 457 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH----------------------
Confidence 33343 456677766666655541 11 11223333333333321 1000000
Q ss_pred CChhhhhHHHHHHHHHh-CCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH
Q 045105 309 PNVYTWNAMQLFSEMLS-LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR 387 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 387 (601)
...-.++..+++-.+ ..-.|+...|..+- ++..++++.|.....+..+.+-.-++..+..+.-.+...+++.+|+
T Consensus 458 --~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 458 --ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred --HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 000011222222222 22345554554443 4455788999999999888877778888888888888899999998
Q ss_pred HHHhcCCCCChhhHH---HHHHHHHHcCChhhHHHHHHHHHH---------------------CCC-----Ccc--HHhH
Q 045105 388 LAYKRISTPDLVSQN---AMLTAYAMHGHGKEGIAHFRRILA---------------------SGF-----RPD--HISF 436 (601)
Q Consensus 388 ~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~---------------------~~~-----~p~--~~~~ 436 (601)
.+.+.........++ .-+..-..-++.++++.....++. .|+ .|. ..++
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 888765521111111 111111223444444444333321 010 111 1122
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCch--------HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK--------HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGAL 506 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 506 (601)
..+..-....+ ..+..- ..+....+.|+.. .|......+.+.+..++|..-+.+. .+.| ....|.-.
T Consensus 614 r~ls~l~a~~~--~~~~se-~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 614 RYLSSLVASQL--KSAGSE-LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred HHHHHHHHhhh--hhcccc-cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 22222111100 000000 0011122223322 3445566778888889998777666 3344 55666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH--HHHHHhhcCC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR--TRQKMKDRRM 565 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~l~~~~~~~~ 565 (601)
...+...|..++|.+.|..+..++|+++.+...++.++.+.|+-.-|.. ++..+.+.++
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 6667788999999999999999999999999999999999998887777 8888888774
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-08 Score=91.54 Aligned_cols=217 Identities=13% Similarity=0.118 Sum_probs=170.9
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHH
Q 045105 342 CSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGI 418 (601)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~ 418 (601)
+.+.|++..|.-.|+..++... -+...|..|.......++-..|+..+.+.. +.|....-.|.-+|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4577889999999988887653 367778878777787888778888887766 455567777778899999999999
Q ss_pred HHHHHHHHCCCC-----c---cHHhHHHHHHHHhccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHH
Q 045105 419 AHFRRILASGFR-----P---DHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489 (601)
Q Consensus 419 ~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 489 (601)
..++..+....+ + +...-.. ..+.....+....++| +.....+..+|+.+...|.-.|.-.|++++|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988664210 0 0000000 1222333345566666 777777777888899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 490 FIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 490 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
-|+.+ ..+| |...|+.|...++...+.++|+..|.++.++.|.-..+.+.|+-.|...|.|++|.+.|-+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99987 5677 778999999999999999999999999999999999999999999999999999999977654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-05 Score=80.80 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=116.6
Q ss_pred CCchhHHHHHhhCCCCCcc---chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHH
Q 045105 6 GSLDDAKKVFKMMPERDCV---SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGML 82 (601)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 82 (601)
++...|...|=+..+-++. .|..|...|....+...|...|+...+ ....+...+......|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3455666666666554433 688888888887788888888888877 55667778888888888888888888873
Q ss_pred HHHHHcCCCCC-Hh--hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 045105 83 FRMQAEGLEPN-AR--TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN 159 (601)
Q Consensus 83 ~~m~~~~~~p~-~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (601)
-.--+. .|- .. .|..+--.+...++..++..-|+...+.. +-|...|..+..+|.++|++..|.++|.+...-+
T Consensus 550 l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 550 LRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 332221 111 11 12222223455677777777777777654 4566788888888888888888888887665433
Q ss_pred ch-hHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 045105 160 EV-SCNTI--IVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 160 ~~-~~~~l--i~~~~~~g~~~~a~~~~~~m~~ 188 (601)
+. +|... ....+..|.+.+|+..+.....
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 22222 2234557778888877776653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.0001 Score=67.68 Aligned_cols=303 Identities=13% Similarity=0.074 Sum_probs=192.8
Q ss_pred CCCCHhhHHHHHHHHHhc--CCcchHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchh---H
Q 045105 90 LEPNARTLSSVLPACARL--QKLSLGKEFHGYITR-NGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVS---C 163 (601)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~ 163 (601)
+.|...+....+.+++.. ++-..+...+-.+.. .-++.++.....+.+++...|+.+.|...|+....-|..+ .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 344444555555555443 444444444444433 3356778899999999999999999999999877444333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-FTFGSVLIACA 242 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~ 242 (601)
....-.+.+.|+.+....+...+.... .-....|-.-.......+++..|+.+-++..+ +.|+. ..|..--..+.
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID---SEPRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc---cCcccchHHHhccHHHH
Confidence 333445667888888888887776432 12333344445556678889999999887765 33332 22322234566
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHH
Q 045105 243 DMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSE 322 (601)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (601)
..++.+.|.-.|....... +.+...|..|+++|...|++.+|.-.-+. ..+.|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~------~~~~~~------------------- 399 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW------TIRLFQ------------------- 399 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH------HHHHhh-------------------
Confidence 7888888888887776543 45678999999999999999888755441 111111
Q ss_pred HHhCCCCCCHhHHHHHH-HHhc-CCCchhhHHHHHHHHHHhCCCCc-hhHHhHHHHHHHhcCChHHHHHHHhcCC--CCC
Q 045105 323 MLSLDLTPDIYTVGIIL-SACS-SLATMERGKQVHAYAIRCGYDSD-VHIGTALVDMYAKCGSLKHARLAYKRIS--TPD 397 (601)
Q Consensus 323 ~~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~ 397 (601)
.+..+.+.+- ..|. ...--++|..+++...+.. |+ ....+.+...+...|+.++++.++++.. .+|
T Consensus 400 -------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 400 -------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred -------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 1222222221 1111 1223356666666554432 32 3344566777788888888888888766 588
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH 433 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (601)
....+.|...+...+.+.+|++.|...+.. .|+.
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 888888888888888888888888887774 4543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.3e-06 Score=78.18 Aligned_cols=231 Identities=11% Similarity=-0.076 Sum_probs=129.5
Q ss_pred CChHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHH
Q 045105 37 GLVLEALECLERMSSLDNETPN--LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGK 114 (601)
Q Consensus 37 ~~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 114 (601)
+..+.++..+.++.......|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4456666666666653111121 3446666667777777777777777776652 334566777777777777777777
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 045105 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ 192 (601)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 192 (601)
..|+..++.. +.+..++..+..++...|++++|.+.|+.... |+..............++.++|.+.|.+..... .
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 7777777653 22345666666677777777777777776653 222111111222334567778877776544322 2
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-----ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchh
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP-----TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTF 267 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (601)
|+. |. ........|+...+ +.+..+.......| ....|..+-..+...|+.++|...|+.....++...+.
T Consensus 197 ~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 197 KEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred ccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 222 22 12222334554443 23433332111111 12456666777778888888888888877766433333
Q ss_pred HHHHHHH
Q 045105 268 VGGALVE 274 (601)
Q Consensus 268 ~~~~li~ 274 (601)
.-.+++.
T Consensus 273 ~~~~~~e 279 (296)
T PRK11189 273 HRYALLE 279 (296)
T ss_pred HHHHHHH
Confidence 3333443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00016 Score=68.96 Aligned_cols=440 Identities=13% Similarity=0.105 Sum_probs=253.5
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
-|..+|+.|+.-+..+ .++++++.++++.. ..+-....|..-|..-.+.++++..+.+|.+-... ..+...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 3778999999988777 99999999999987 66777889999999999999999999999997765 3345555555
Q ss_pred HHHHHhc-CCcch----HHHHHHHHH-HhcCCCc-hHHHHHHHHH---------HHhcCCHHHHHHHHhhcCCC------
Q 045105 101 LPACARL-QKLSL----GKEFHGYIT-RNGFMSN-PFVVNGLVDV---------YRRCGDMLSALKIFSKFSIK------ 158 (601)
Q Consensus 101 l~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~------ 158 (601)
|.-..+. ++... ..+.|+... +.|..+- -..|+..+.. |....+++...++++++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 5443332 23332 223344333 4554433 2345554433 23344677778888877632
Q ss_pred ----CchhHHHHHHHH-------HhcCCHHHHHHHHHHHHh--cCCCCCeee---------------hHHHHHHHHhCCC
Q 045105 159 ----NEVSCNTIIVGY-------CENGNVAEARELFDQMEH--LGVQRGIIS---------------WNSMISGYVDNSL 210 (601)
Q Consensus 159 ----~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~g~~~~~~~---------------~~~li~~~~~~~~ 210 (601)
|-.+|..=|+.. -+...+..|.++++++.. .|+.....+ |-.+|..=-.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111222222211 123446678888877753 344432222 3223322111111
Q ss_pred --------hhHHHHHHHHHHHcCCCCCChhhH-HHHH----HHhcccCC-------HHHHHHHHHHHHHcCCCCchhHHH
Q 045105 211 --------YDEAFSMFRDLLMRDGIEPTSFTF-GSVL----IACADMNS-------LRKGKEIHALAIALGLQSDTFVGG 270 (601)
Q Consensus 211 --------~~~a~~~~~~~~~~~~~~p~~~~~-~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 270 (601)
-....-.+++.+..-+..|+.... ...+ +.+...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222333333323344433221 1111 11222233 233334443333322222222222
Q ss_pred HHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhh
Q 045105 271 ALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMER 350 (601)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 350 (601)
.+.+ .+++.. .+..--.....+..+...-..--..+|...++.-.+..-+..
T Consensus 333 ~~a~-------~eE~~~---------------------~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 333 ALAD-------YEESRY---------------------DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred HHHh-------hHHHhc---------------------ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 2221 111100 000000001222222222122223457778888888899999
Q ss_pred HHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 351 GKQVHAYAIRCGYDS-DVHIGTALVDMYAKCGSLKHARLAYKRIST--PDLV-SQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 351 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
|+.+|.+..+.+..+ ++.++++++..|| .++..-|.++|+.-.+ +|.. --...+.-+...++-..+..+|++.+.
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 999999999988777 7888889998877 5888999999987652 4444 445677788888999999999999999
Q ss_pred CCCCccH--HhHHHHHHHHhccCchHHHHHHHHH-HHhcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 427 SGFRPDH--ISFLSALSACVHAGSIKTGSEFFDL-MAYYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 427 ~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
.++.|+. ..|..++..=..-|+...+.++-+. +.... ..+....-..+++-|.-.+....-..-++.+
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9777776 4899999988899999999988844 33222 2333334455666676666554444444444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-07 Score=78.14 Aligned_cols=151 Identities=11% Similarity=0.119 Sum_probs=112.8
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...... +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4457778887776444332221 11 01223566677777775444433 56677899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGC-VSHGN--LEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++.+.+|+++.++..++.++...|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 4456 666777777764 66676 59999999999999999999999999999999999999999999
Q ss_pred HhhcCCccC
Q 045105 560 MKDRRMHKS 568 (601)
Q Consensus 560 ~~~~~~~~~ 568 (601)
+.+...+.+
T Consensus 170 aL~l~~~~~ 178 (198)
T PRK10370 170 VLDLNSPRV 178 (198)
T ss_pred HHhhCCCCc
Confidence 988876544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-05 Score=83.60 Aligned_cols=367 Identities=9% Similarity=-0.026 Sum_probs=196.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCchh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 137 DVYRRCGDMLSALKIFSKFSIKNEVS--CNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
..+...|++..|.............. ...........|+++.+..+++.+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 33444555555554444443221111 1122334556778877777777663221122333334445556678899999
Q ss_pred HHHHHHHHHcCCC-----CCChh--hHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHH
Q 045105 215 FSMFRDLLMRDGI-----EPTSF--TFGSVLIACADMNSLRKGKEIHALAIALGLQSDT----FVGGALVEMYCRYQDLV 283 (601)
Q Consensus 215 ~~~~~~~~~~~~~-----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 283 (601)
..++........- .|... .....-..+...|+++.|...++.........+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 9888876542111 11111 1112223456789999999999887764212221 23455666677899999
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC-CCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL-TPDIYTVGIILSACSSLATMERGKQVHAYAIRC- 361 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 361 (601)
.|...+...... .. ..|. .+...++..+...+...|+++.|...+......
T Consensus 509 ~A~~~~~~al~~------~~---------------------~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 509 RALAMMQQTEQM------AR---------------------QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHHH------Hh---------------------hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 998888732111 00 0010 011223445566677888999988887766542
Q ss_pred ---CCC--C-chhHHhHHHHHHHhcCChHHHHHHHhcCCC------C--ChhhHHHHHHHHHHcCChhhHHHHHHHHHHC
Q 045105 362 ---GYD--S-DVHIGTALVDMYAKCGSLKHARLAYKRIST------P--DLVSQNAMLTAYAMHGHGKEGIAHFRRILAS 427 (601)
Q Consensus 362 ---~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 427 (601)
+.. + ....+..+...+...|++++|...+..... + ....+..+...+...|++++|...+++....
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 211 1 122233444556667888888777766531 1 1223334455666778888888877776542
Q ss_pred CCCc-cHHhH-----HHHHHHHhccCchHHHHHHHHHHHhcCCCcCch----HHHHHHHHhhhcCChHHHHHHHHhC---
Q 045105 428 GFRP-DHISF-----LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK----HYTCMVDLLSRAGELGEAYEFIKKI--- 494 (601)
Q Consensus 428 ~~~p-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~--- 494 (601)
.-.. ....+ ...+..+...|+.+.|..++........ .... .+..+..++...|+.++|...+++.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 642 LGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1010 00101 1112333446777777777644322111 1111 1234556677777777777777665
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 495 ----PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 495 ----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+..+ ...+...+..++...|+.++|.+.+.++.++..
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 1111 123444555667777888888888888887764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-05 Score=68.87 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=127.7
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChh
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~ 415 (601)
+..+...|+...|......+.+.. +.|...+..-..+|...|++..|+.=++... ..+...+--+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 334445566666666666666543 3466677777777888888888876655443 455555556666677778888
Q ss_pred hHHHHHHHHHHCCCCccHHh----HHHH---H------HHHhccCchHHHHHHHHHHHhcCCC-c--CchHHHHHHHHhh
Q 045105 416 EGIAHFRRILASGFRPDHIS----FLSA---L------SACVHAGSIKTGSEFFDLMAYYDVK-P--SLKHYTCMVDLLS 479 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~----~~~l---~------~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~ 479 (601)
.++...++-++ +.||... |..| . ......+.|.++....+...+.... + ....+..+..++.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 88888887776 4676542 2111 1 1223455666666666444443322 1 1234556667777
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 480 RAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
..|++.+|+....+. ...|+ ..++.--..+|.-..+++.|+.-|+++.+.+|+|..+-.
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 888899998888776 45564 667777777888888889999999999888887655433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.8e-05 Score=70.35 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=71.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCC
Q 045105 31 TACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA-RTLSSVLPACARLQK 109 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~ 109 (601)
.+....|+++.|+.+|.+... ..++|.+.|+.-..+|++.|++++|++=-.+-++. .|+- ..|+..-.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 345567788888888887777 45667778888888888888888777666555543 4542 357777777777778
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVY 139 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 139 (601)
+++|...|..-++.. +.+...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 888888777766653 44455666666665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-05 Score=74.17 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=106.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-CccH--HhHHHHHHHHhc
Q 045105 372 ALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RPDH--ISFLSALSACVH 445 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~ 445 (601)
.+...+...|++++|...+++.. +.+...+..+...|...|++++|..++++...... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34445566666666666666554 23344556666667777777777777776665421 1222 234456666677
Q ss_pred cCchHHHHHHHHHHHhcCC-CcCchHH-H--HHHHHhhhcCChHHHHHH--H-Hh---C-CCCCCHHHHHHHHHHHHhcC
Q 045105 446 AGSIKTGSEFFDLMAYYDV-KPSLKHY-T--CMVDLLSRAGELGEAYEF--I-KK---I-PMAPDSVMWGALLGGCVSHG 514 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~---~-~~~~~~~~~~~l~~~~~~~g 514 (601)
.|++++|..+++....... .+..... + .++.-+...|....+.+. + .. . ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 7777777777755432221 1111111 1 222222333322222211 1 11 1 10111122224556667788
Q ss_pred ChhHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 515 NLEFGQIAADRLIELE-P--------NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+.+.|...++.+.... . .........+.++...|++++|.+.+.+....+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888876532 1 134455667778889999999999999887655
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-05 Score=76.49 Aligned_cols=450 Identities=12% Similarity=0.037 Sum_probs=262.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----chhHHHHHHHH
Q 045105 96 TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN-----EVSCNTIIVGY 170 (601)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~ 170 (601)
.|..|-..|+...+...|.+.|+..-+.. ..+........+.|++..+++.|..+.-...+.+ ...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 46666666666666667777777766543 3455667778888888888888888844333221 11244455567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH--HhcccCCHH
Q 045105 171 CENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI--ACADMNSLR 248 (601)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~ 248 (601)
.+.++..+|..-|+...... +.|...|..++.+|.+.|++..|++.|.+... +.|+. +|..... .-+..|.+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhHH
Confidence 77888888888888887665 45788899999999999999999999987654 55654 3333222 245678888
Q ss_pred HHHHHHHHHHHcC------CCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh----HHH
Q 045105 249 KGKEIHALAIALG------LQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN----AMQ 318 (601)
Q Consensus 249 ~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~ 318 (601)
++...+..+.... ...-..++-.+...+.-.|-..+|.+.++.-- ..+..........+...|. +..
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi---e~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI---ESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 8888887765431 11112233333333333444444444444211 1111111111122333332 233
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHH-----HHHhCCCCchhHHhHHHHHHHh----cC----ChHH
Q 045105 319 LFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY-----AIRCGYDSDVHIGTALVDMYAK----CG----SLKH 385 (601)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~ 385 (601)
+|-+.. .. .|+.....++..-....+...+-. ++-- ........++..+..+...|.+ +| +...
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 333333 11 344433333333233333221111 0000 0011111223333333333332 22 2335
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc
Q 045105 386 ARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 386 a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (601)
|...++... ..+..+||.|.-. ...|++.-|.-.|-+-.... +.+..+|..+.-.+....+++.|...|...+..
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 677776655 4667788877655 55577777777776665542 444568888888889999999999999886654
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHH----------HHHH
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-------PMAPDSVMWGALLGGCVSHGNLEFGQI----------AADR 525 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~----------~~~~ 525 (601)
. +.+...|--........|+.-++..+|..- +-.|+..-|-....-....|+++.-+. .+++
T Consensus 880 d-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 D-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred C-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 3 334445544444445778888888888652 223555555555555555665554443 4555
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 526 LIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
.....|+...+|...+..+-+.+.+.+|.+...++
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 66668999999999999999999999998886654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=78.89 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=109.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC-h---hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH----h
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIST--PD-L---VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI----S 435 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 435 (601)
....+..+...+...|++++|...|+++.. |+ . ..+..+..+|...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 444555566666777777777777776552 22 1 24555666777777777777777777664 33221 2
Q ss_pred HHHHHHHHhcc--------CchHHHHHHHHHHHhcCCCcCc-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 045105 436 FLSALSACVHA--------GSIKTGSEFFDLMAYYDVKPSL-KHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGAL 506 (601)
Q Consensus 436 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 506 (601)
+..+..++... |++++|.+.++.+... .|+. ..+..+... +...... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 33333344332 5566666666544433 2221 111111110 0000000 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
...+.+.|+++.|...++++.+..|+++ ..+..++.++...|++++|...++.+..+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5668889999999999999999987644 688999999999999999999999887665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.9e-05 Score=72.17 Aligned_cols=263 Identities=8% Similarity=-0.048 Sum_probs=155.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChh-hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLV-SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
.|..+...+...|+.+.+...+....+.....++.. ........+...|++++|.+.+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 456666667777888887777777665322222221 12223445667899999999999987752 333333332 212
Q ss_pred HHh----cCCcchHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCC
Q 045105 104 CAR----LQKLSLGKEFHGYITRNGFMSN-PFVVNGLVDVYRRCGDMLSALKIFSKFSI---KNEVSCNTIIVGYCENGN 175 (601)
Q Consensus 104 ~~~----~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 175 (601)
+.. .+....+.+.++. ..+..|+ ......+...+...|++++|.+.+++... .+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 222 3444444444443 1122233 33444566678889999999999988763 356678888899999999
Q ss_pred HHHHHHHHHHHHhcCCC-CCe--eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH-H--HHHHHhcccCCHHH
Q 045105 176 VAEARELFDQMEHLGVQ-RGI--ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF-G--SVLIACADMNSLRK 249 (601)
Q Consensus 176 ~~~a~~~~~~m~~~g~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~ll~~~~~~~~~~~ 249 (601)
+++|...+++....... |+. ..|..+...+...|++++|..++++........+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 99999999988765321 222 234567888999999999999999875422211222211 1 22333333443333
Q ss_pred HHHH---HHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHhhh
Q 045105 250 GKEI---HALAIALGL-QSDTFVGGALVEMYCRYQDLVAAQMAFDE 291 (601)
Q Consensus 250 a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 291 (601)
+.+. ......... ............++...|+.+.|...++.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3332 222111100 11122223566777889999999988883
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-07 Score=83.82 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=146.5
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CC----ChhhHHHHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TP----DLVSQNAMLTAY 408 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~----~~~~~~~ll~~~ 408 (601)
....+.+++...|..+.+. ..+.+.. .|.......+...+...++-+.+..-++... .+ +..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4455667777777665433 3333333 5666666555555544455566666555443 22 222222222345
Q ss_pred HHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCCh
Q 045105 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGEL 484 (601)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 484 (601)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+.. .| .+...|..++.. ...+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 5679999999888653 344566677889999999999999998887643 33 344455555432 3369
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 045105 485 GEAYEFIKKIP--MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRW-SDLARTRQKMK 561 (601)
Q Consensus 485 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~l~~~~ 561 (601)
.+|..+|+++. ..+++.+.+.+..++...|++++|++.++++.+.+|+++.++..++-+....|+. +.+.+++.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999983 3467788888888899999999999999999999999999999999998999998 67888888888
Q ss_pred hcC
Q 045105 562 DRR 564 (601)
Q Consensus 562 ~~~ 564 (601)
+..
T Consensus 264 ~~~ 266 (290)
T PF04733_consen 264 QSN 266 (290)
T ss_dssp HHT
T ss_pred HhC
Confidence 765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-07 Score=74.22 Aligned_cols=94 Identities=10% Similarity=-0.091 Sum_probs=57.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
+..+...+...|++++|...|+.. ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334455556666666666666655 2333 45555666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHhhcC
Q 045105 549 RWSDLARTRQKMKDRR 564 (601)
Q Consensus 549 ~~~~A~~~l~~~~~~~ 564 (601)
++++|...+++..+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666655544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=69.93 Aligned_cols=124 Identities=10% Similarity=0.008 Sum_probs=97.7
Q ss_pred HHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 045105 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM 496 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 496 (601)
..++++.++ +.|+. +..+..++...|++++|...|+...... +.+...|..+..++.+.|++++|+..|++. ..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345566655 35654 4456677788999999999997765543 446778888889999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 497 AP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 497 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
.| +...+..+...+...|++++|...++++.+..|+++..+...+.++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 55 677888888889999999999999999999999999888887776543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=54.99 Aligned_cols=32 Identities=25% Similarity=0.617 Sum_probs=18.4
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
|+.||..+|++|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00032 Score=77.77 Aligned_cols=302 Identities=8% Similarity=-0.032 Sum_probs=160.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC----CCC---c-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe----ee
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFS----IKN---E-----VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI----IS 197 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~----~~~---~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~ 197 (601)
.....+...|+++++...+.... ..+ . .....+...+...|++++|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34444556677777777765442 111 1 11122234455678888888888776543111111 22
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CC--ChhhHHHHHHHhcccCCHHHHHHHHHHHHHc----CCC--C-ch
Q 045105 198 WNSMISGYVDNSLYDEAFSMFRDLLMRDGI--EP--TSFTFGSVLIACADMNSLRKGKEIHALAIAL----GLQ--S-DT 266 (601)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 266 (601)
.+.+...+...|++++|...+.+......- .+ ....+..+...+...|+++.|...+.+.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 344555666778888888877776531110 01 1123344445566778888887777665542 211 1 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCC
Q 045105 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLA 346 (601)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 346 (601)
..+..+...+...|++++|...+.. .... ....+.......+..+.......|
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~----------al~~-----------------~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARK----------GLEV-----------------LSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH----------hHHh-----------------hhccCchHHHHHHHHHHHHHHHcC
Confidence 2334455556667888888777662 2100 000010011223444555666778
Q ss_pred chhhHHHHHHHHHHhCCCC-chhHH-----hHHHHHHHhcCChHHHHHHHhcCCCCChh-------hHHHHHHHHHHcCC
Q 045105 347 TMERGKQVHAYAIRCGYDS-DVHIG-----TALVDMYAKCGSLKHARLAYKRISTPDLV-------SQNAMLTAYAMHGH 413 (601)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~ll~~~~~~~~ 413 (601)
+.+.|...+.......... ....+ ...+..+...|+.+.|...+.....+... .+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 8888888777765421110 00000 11223345577888888777665532111 12345566777788
Q ss_pred hhhHHHHHHHHHHC----CCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhc
Q 045105 414 GKEGIAHFRRILAS----GFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 414 ~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (601)
+++|...+++.... |..++. .+...+..++...|+.++|...+....+.
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888776553 222222 24555566777888888888887554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-07 Score=53.67 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=19.4
Q ss_pred cCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 124 GFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 124 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.8e-05 Score=69.72 Aligned_cols=224 Identities=11% Similarity=0.035 Sum_probs=157.2
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 045105 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG-SLKHARLAYKRIS---TPDLVSQNAMLTAYAM 410 (601)
Q Consensus 335 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~ 410 (601)
+..+-..+...+..++|......+++.... +..+++.--..+...| +++++...++++. ..+...|+.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 334444556677889999999988876432 3334444444555666 5789999998876 3455567766656666
Q ss_pred cCCh--hhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc---CCh-
Q 045105 411 HGHG--KEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA---GEL- 484 (601)
Q Consensus 411 ~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 484 (601)
.|+. ++++.+++++++.. +-|..+|.....++...|+++++++.++.+.+.+. -+...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccccc
Confidence 6653 67899999998853 34556888888888889999999999977777653 3455666665555444 222
Q ss_pred ---HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-------
Q 045105 485 ---GEAYEFIKK-IPMAP-DSVMWGALLGGCVSH----GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG------- 548 (601)
Q Consensus 485 ---~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 548 (601)
++++++..+ +...| |...|+.+...+... +...+|.+.+.++.+.+|+++.++..|+.+|+...
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~ 276 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFR 276 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhh
Confidence 456666644 45566 677888888888763 34567889999998999999999999999998642
Q ss_pred -----------CHHHHHHHHHHHh
Q 045105 549 -----------RWSDLARTRQKMK 561 (601)
Q Consensus 549 -----------~~~~A~~~l~~~~ 561 (601)
..++|.++++.+.
T Consensus 277 ~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 277 DTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhccccccccHHHHHHHHHHHH
Confidence 2366777777773
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=68.43 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
..+-..+...|+-+....+....... -.-|.......+....+.|++..|...++.... .-++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHc
Confidence 44455566666666666666654432 122333444566666777777777777765433 3366677777777777777
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
|+.++|..-+.+. .+.| ++...+.+...+.-.||.+.|...+..+....+.+..+-..|+.+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777666655 3344 455666677777777777777777777777766677777777777777777777777643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-05 Score=66.95 Aligned_cols=121 Identities=14% Similarity=0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
.+..+....+.|++..|+..+++..... ++|...|+.+.-+|.+.|+.+.|..-|....+.. .-++..++.+.-.|.-
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L 180 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHH
Confidence 3334444444555555555555544432 3344444444445555555555554443322221 1122233444444444
Q ss_pred cCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 481 AGELGEAYEFIKKIPM--APDSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 481 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
.|+.+.|..++...-. ..|..+-..+.......|+++.|+.+.
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 4555555554444411 113444444444444445544444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=79.40 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=92.9
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 364 DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 364 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
+|--..-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..++ +|++.-|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 333444455566666677777777777653 34555566777777777777766666662 66666666666665
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...--+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 5555556666555321111 0011111122234444444444322 2222 33444444444444444444444
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.|.....++|++...++++..+|.+.|+-.+|...+++..+-
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 444444444444444444444444444444444444444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0009 Score=60.20 Aligned_cols=157 Identities=8% Similarity=0.037 Sum_probs=80.5
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH---HHHHhcCCcchHHHHHHHHHHhcCCCchHH-HH
Q 045105 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL---PACARLQKLSLGKEFHGYITRNGFMSNPFV-VN 133 (601)
Q Consensus 58 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~ 133 (601)
++.-.--+...+...|++..|+.-|....+- .| ..|.++. ..|...|+...|+.-+...++. +||-.. -.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--Cc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444444556666667777777777666542 23 2333333 3455566666666666666553 444321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCc--h----------------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFSIKNE--V----------------SCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI 195 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 195 (601)
.-...+.+.|.++.|..-|+.+...++ . .....+..+.-.|+...|++....+.+.. +-|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 223445667777777777766652211 0 01122333444555555555555555433 2344
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHH
Q 045105 196 ISWNSMISGYVDNSLYDEAFSMFRDL 221 (601)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~~ 221 (601)
..|..-..+|...|.+..|+.=++..
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45555555555555555555544443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0034 Score=64.03 Aligned_cols=541 Identities=13% Similarity=0.036 Sum_probs=281.1
Q ss_pred CCCchhHHHHHhhCCCCCc-cchHHHHHHH--HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPERDC-VSWNSVVTAC--AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~-~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
++++.+|.....++.++.+ ..|...+.++ .+.|+.++|..+++..... ...|..|...+-.+|...+..++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 5678888888888886444 3566677765 6689999999999987764 334888999999999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----------HHHHHHH
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD----------MLSALKI 151 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~ 151 (601)
|++..+. -|+..-...+..++.+.+++.+-.++-=++-+. ++-+...+=++++.+..... ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999865 678878888888999988877666554444442 34455555555555544211 2234444
Q ss_pred HhhcCCCC--chh---HHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045105 152 FSKFSIKN--EVS---CNTIIVGYCENGNVAEARELFDQM-EHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD 225 (601)
Q Consensus 152 ~~~~~~~~--~~~---~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 225 (601)
++.+.+.+ ..+ ...-...+-..|++++|.+++..- -..-...+...-+.-+..+...++|.+..++-.++.. .
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~-k 255 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE-K 255 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH-h
Confidence 44444332 111 222334456678899999988443 3332223333444566777888899998888888876 3
Q ss_pred CCCCChhhHHHHHHHh----------------cccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH---hcCCHHHHH
Q 045105 226 GIEPTSFTFGSVLIAC----------------ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYC---RYQDLVAAQ 286 (601)
Q Consensus 226 ~~~p~~~~~~~ll~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~ 286 (601)
| +|. |...+... ...+.++...+......... ....|-+-+.++. .-|+.+++.
T Consensus 256 ~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 256 G--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred C--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHH
Confidence 3 232 32222211 11122222222222222221 1111222222222 335555544
Q ss_pred HHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCC-chhhHHHHHHHHH------
Q 045105 287 MAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLA-TMERGKQVHAYAI------ 359 (601)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~------ 359 (601)
..|-. -+..++- +..|...| -..-+..-...++..+.... +.....+++..-.
T Consensus 329 ~~y~~------kfg~kpc--c~~Dl~~y------------l~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~ 388 (932)
T KOG2053|consen 329 SYYFK------KFGDKPC--CAIDLNHY------------LGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLL 388 (932)
T ss_pred HHHHH------HhCCCcH--hHhhHHHh------------hccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHH
Confidence 33220 0001110 00011000 00001111122222222211 1111111111100
Q ss_pred -HhC--CCCchhHHh----HHHHHHHhcCChHHHHHHHhcCCCCCh---------hhHHHHHHHHHHcCChh---hHHHH
Q 045105 360 -RCG--YDSDVHIGT----ALVDMYAKCGSLKHARLAYKRISTPDL---------VSQNAMLTAYAMHGHGK---EGIAH 420 (601)
Q Consensus 360 -~~~--~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~ll~~~~~~~~~~---~a~~~ 420 (601)
-.| ...+..... .++..|++. ..+=+... |+. -+-+.|+..+-+.++.. +|+-+
T Consensus 389 rl~G~~~~l~ad~i~a~~~kl~~~ye~g------ls~~K~ll-~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 389 RLLGLYEKLPADSILAYVRKLKLTYEKG------LSLSKDLL-PTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHhhccccCChHHHHHHHHHHHHHHhcc------cccccccc-ccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 001 011111111 111111111 00000000 111 23567778888887755 45555
Q ss_pred HHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--C-C
Q 045105 421 FRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--M-A 497 (601)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~ 497 (601)
++.-.... +-|..+-..+|+.|+-.|-+..|..+|..+.-..+.-|..-|. +..-+...|++..+...++..- . .
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 55555432 3344566678899999999999999998877777777765543 4456667788888877776541 0 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcce
Q 045105 498 PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSW 573 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 573 (601)
--..+-..+..|| +.|.+.+..++..-=..+.-. -..+-......++..++.+.-...+..|...-.....++..
T Consensus 540 ~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~ 618 (932)
T KOG2053|consen 540 SLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVS 618 (932)
T ss_pred hhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhccccc
Confidence 1111222233344 456666665554433333211 12233445666677888888888888776322222233222
Q ss_pred EEeCCceeeeecCCC
Q 045105 574 IEDRDEIHKFRASDR 588 (601)
Q Consensus 574 ~~~~~~~~~~~~~~~ 588 (601)
.......+.+..-+-
T Consensus 619 L~DNRDl~~~~~w~p 633 (932)
T KOG2053|consen 619 LSDNRDLNAIPYWDP 633 (932)
T ss_pred ccccccccccccCCC
Confidence 223455665544333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-06 Score=67.32 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
...-.+...+...|++++|.++|+-+ ...| +..-|-.|...|-..|++++|+..|.++..++|++|..+.+++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445666678999999999999988 3456 666778888888889999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|+.+.|++-|+.....-
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999776443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-05 Score=67.05 Aligned_cols=154 Identities=10% Similarity=0.151 Sum_probs=114.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHH
Q 045105 374 VDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGS 453 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (601)
+..|...|+++.+....+.+..+. ..|...++.++++..++..++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777888777655543333221 01223566788888888888763 556678999999999999999999
Q ss_pred HHHHHHHhcCCCcCchHHHHHHHHh-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 454 EFFDLMAYYDVKPSLKHYTCMVDLL-SRAGE--LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
..++...... +-+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.+
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9997665544 34566777777764 67777 59999999988 4456 667888888889999999999999999999
Q ss_pred cCCCCCchH
Q 045105 529 LEPNNTGNY 537 (601)
Q Consensus 529 ~~p~~~~~~ 537 (601)
..|.+..-+
T Consensus 173 l~~~~~~r~ 181 (198)
T PRK10370 173 LNSPRVNRT 181 (198)
T ss_pred hCCCCccHH
Confidence 988766544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-05 Score=74.34 Aligned_cols=209 Identities=9% Similarity=0.020 Sum_probs=124.3
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChh
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~ 415 (601)
+...+.+.|-...|..+++.+. .+..++.+|...|+..+|..+..... +|+...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3344444555555555554322 34455666666666666655554333 455566666655555555556
Q ss_pred hHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHH-HHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDL-MAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+|.++.+..-.. .-..+.....+.++++++.+.|+. +.-. +....+|-.+..+..+.++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 666665543322 111111222345677777777733 3222 223446666666667777777777777655
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 495 -PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 495 -~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
...| +...|+.+-.+|.+.|+..+|...++++.+-+-++..++.+..-+..+-|.|++|.+.+.++.+..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 3455 455677777777777777777777777777776677777777777777777777777777765443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.7e-05 Score=76.76 Aligned_cols=175 Identities=12% Similarity=0.043 Sum_probs=111.3
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHH
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM 474 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 474 (601)
.+...+-.|.....+.|+.++|..+++...+ +.|+.. ....+..++.+.+++++|....+...... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3456666777777777888888888888777 466654 55566677777888888887776654432 3334556666
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 475 VDLLSRAGELGEAYEFIKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
..++.+.|++++|..+|+++- ..| +...+..+..++...|+.++|...|+++.+...+-...|..++ ++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence 777777888888888887773 234 3567777777777778888888888888777543433333332 33333
Q ss_pred HHHHHHHHhhcCCccCCCcceEEeCCc
Q 045105 553 LARTRQKMKDRRMHKSPGCSWIEDRDE 579 (601)
Q Consensus 553 A~~~l~~~~~~~~~~~~~~~~~~~~~~ 579 (601)
-..+++++.-.+.......+.+.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKM 261 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHH
Confidence 445556555445444444444444433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-05 Score=73.99 Aligned_cols=212 Identities=18% Similarity=0.189 Sum_probs=115.3
Q ss_pred CCCCCchhHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHH
Q 045105 3 GKCGSLDDAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAI 79 (601)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 79 (601)
.+.|++.+|.-+|+...+. +..+|..|.......++-..|+..+++..+ ..+-|....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 3556677777777766643 334666666666666666667777777666 45566666666777777777777777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHH---------HHHHhcCCcchHHHHHHHHH-HhcCCCchHHHHHHHHHHHhcCCHHHHH
Q 045105 80 GMLFRMQAEGLEPNARTLSSVL---------PACARLQKLSLGKEFHGYIT-RNGFMSNPFVVNGLVDVYRRCGDMLSAL 149 (601)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll---------~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (601)
+++....... |.-. |...- ..+.....+....++|-++. ..+..+|+.+...|--.|.-.|++++|.
T Consensus 374 ~~L~~Wi~~~--p~y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhC--ccch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7776665431 1000 00000 00111111222233333332 3333355666666666666666666666
Q ss_pred HHHhhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-eeehHHHHHHHHhCCChhHHHHHHHHH
Q 045105 150 KIFSKFS--IK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRG-IISWNSMISGYVDNSLYDEAFSMFRDL 221 (601)
Q Consensus 150 ~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 221 (601)
..|+... .| |...||-|...++...+.++|+..|.+.++. .|+ +.+..-|.-.|...|.+++|.+.|-..
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 6666554 22 4555666666666666666666666666554 232 333333555556666666666555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00016 Score=74.83 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=92.2
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCC-hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHH
Q 045105 363 YDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPD-LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLS 438 (601)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ 438 (601)
.+.++..+..|.....+.|.+++|..+++... .|+ ......+...+.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 34456677777777788888888888888776 233 345566777778888888888888888775 4544 45566
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+..++...|++++|..+|+.....+ +-+..++..+..++.+.|+.++|...|++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677778888888888886666522 333567777777888888888888888776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.2e-05 Score=78.59 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=117.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCC--------CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIST--------PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISF 436 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~ 436 (601)
+...|-..|......++.++|+++++++.+ .-...|.++++.-...|.-+...++|+++.+- .|+ ..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 445555666666666667776666666542 11234555555555556566666666666652 233 346
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD---SVMWGALLGGCVS 512 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~ 512 (601)
..|...|.+.+++++|.++++.|.+. +.-...+|..++..+.+..+.++|..++.++ ..-|. .....-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66666677777777777777444432 2244556666666676666666666666655 22222 2233334444456
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
.||.+++..+|+....-.|...-.|..++..-.+.|..+.++.+|++....+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 677777777777777777766666666666666677777777777666655543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=65.64 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
.....+...+...|++++|.+.++++ ...| +...|..+...+...|+++.|...++++.+..|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34455566667777777777777766 2234 556666777777777888888888888888888777788888888888
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 888888888887776655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00049 Score=65.15 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=62.7
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...|+++.|+..++.+... .+-|+..+....+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3455666666666443332 2333444445556666666666666666665 33454 4455555566666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
.++.....+|+++..|..|+.+|...|+..+|..
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 6666666666666666666666655444444333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00012 Score=63.45 Aligned_cols=150 Identities=10% Similarity=0.131 Sum_probs=99.1
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh----hc
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS----RA 481 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 481 (601)
..|++.|++++|+...+... ..+.... =...+.+..+.+-|.+.++.|.+.. +-.|.+.|..++. -.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 44777788888887776521 2222222 2334456677778888877776632 3445565555554 34
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH-HHHH
Q 045105 482 GELGEAYEFIKKIP--MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA-RTRQ 558 (601)
Q Consensus 482 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~l~ 558 (601)
+...+|.-+|+++. ..|+..+.+.....+...|++++|+.+++.+...+|++|.++..++-+-...|+-.++. +.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 46788888888883 45677777777777778888888888888888888888888888777777777765543 3455
Q ss_pred HHhhcC
Q 045105 559 KMKDRR 564 (601)
Q Consensus 559 ~~~~~~ 564 (601)
+++...
T Consensus 267 QLk~~~ 272 (299)
T KOG3081|consen 267 QLKLSH 272 (299)
T ss_pred HHHhcC
Confidence 555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0001 Score=68.93 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=135.7
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcC-ChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch--
Q 045105 376 MYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHG-HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI-- 449 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-- 449 (601)
.+...++.++|..+...+.. .+...|+.....+...| ++++++..++++.+.. +-+..+|..-...+.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 34456778888888887763 33445666666666777 5799999999999863 33334566554455556653
Q ss_pred HHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh----hHHH
Q 045105 450 KTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH---GNL----EFGQ 520 (601)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~----~~a~ 520 (601)
+++..+++.+.+.. +-+..+|+....++.+.|+++++++.++++ ...| |...|+.....+.+. |.. +...
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 66777776666544 445778888888899999999999999988 3344 666777666555444 222 5678
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCc
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAY----AGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~~~ 566 (601)
+...++++.+|+|..++..+..++.. .++..+|.++..+..+.++.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 88889999999999999999999987 34567788888887665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00016 Score=65.49 Aligned_cols=185 Identities=14% Similarity=0.005 Sum_probs=101.4
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh----h
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN-LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR----T 96 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 96 (601)
....+..+...+...|++++|...|+++.......|. ..++..+..++.+.|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 4445666777778888888888888887763211111 245677778888888888888888888765 23222 2
Q ss_pred HHHHHHHHHhc--------CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHH
Q 045105 97 LSSVLPACARL--------QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIV 168 (601)
Q Consensus 97 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 168 (601)
+..+..++... |+.+.|.+.++.+.+... .+......+..... ..... ......+..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~ 174 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRNRL----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHHHH----------HHHHHHHHH
Confidence 33333334332 556667777776665431 11112211111100 00000 000113444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC--CCCeeehHHHHHHHHhCCChhHHHHHHHHHHH
Q 045105 169 GYCENGNVAEARELFDQMEHLGV--QRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 223 (601)
.+.+.|++++|...++....... +.....+..+..++...|++++|..+++.+..
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666777777777766665421 11234556666677777777777776666543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-05 Score=74.04 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=97.5
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVS 512 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 512 (601)
....|+..+...++++.|..+++.+.+.. |+ ....+++.+...++-.+|++++.+. ...| +...+..-...|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34455666667788888888887766554 43 4455777777777888888888776 2244 56666666677889
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.++++.|.++.+++.+..|++..+|..|+.+|.+.|++++|+-.++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00051 Score=72.00 Aligned_cols=148 Identities=10% Similarity=0.123 Sum_probs=78.1
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
.+..+..+|-+.|+.++|..+|+++. ..|+...|.+...|+.. +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 34445555555555555555555554 23444555555555555 555555555555442 334
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADR 525 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 525 (601)
.+++..+..+|..+.... +.+...+..+.+..... .+...-..++--+-..|...++++.+..+++.
T Consensus 182 ~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred hhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 445555555554443322 11222222222211111 11122233444455566667778888888888
Q ss_pred HHhcCCCCCchHHHHHHHHH
Q 045105 526 LIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~ 545 (601)
+.+.+|.|..+...++.+|.
T Consensus 249 iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhcCCcchhhHHHHHHHHH
Confidence 88888887777777777776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00032 Score=66.39 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=106.9
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcC
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAG 482 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 482 (601)
...+...|.+++|+..++.++.. .|+.. -.......+...++.++|.+.++.+... .|+ ....-.+.++|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33455678899999999998875 55554 4555567888899999999999766554 444 445566788899999
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 483 ELGEAYEFIKKI--PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 483 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
++.+|+.+++.. ..+-|+..|..|..+|...|+..++... .+..|+..|+|+.|..++...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence 999999998877 2234788899999999999986665544 455677788888888888888
Q ss_pred hhcCCccCC
Q 045105 561 KDRRMHKSP 569 (601)
Q Consensus 561 ~~~~~~~~~ 569 (601)
+++.-.-.|
T Consensus 452 ~~~~~~~~~ 460 (484)
T COG4783 452 SQQVKLGFP 460 (484)
T ss_pred HHhccCCcH
Confidence 776643333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00046 Score=73.23 Aligned_cols=228 Identities=11% Similarity=-0.005 Sum_probs=162.9
Q ss_pred CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch
Q 045105 55 ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN-----ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP 129 (601)
Q Consensus 55 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 129 (601)
.|-+...|-..|......++.++|.++.++.... +.+. -..|.++++.-...|.-+...++|+++.+.. ..-
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 3445667888888888888888888888888764 2222 1356666666666677777888888887753 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CeeehHHHHHHH
Q 045105 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIK---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQR-GIISWNSMISGY 205 (601)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~ 205 (601)
.+|..|...|.+.+..++|.++|+.|.++ ....|...+..+.++.+-+.|..++.+..+.=.+. -...-...+..-
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 56778888888888888888888888744 45678888888888888888888888877652111 122233344555
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHH
Q 045105 206 VDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSD--TFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 283 (601)
.+.|+.+++..+|+..+. ..+-....|+..++.-.+.|+.+.++.+|+.+...++.+- -+.|...+..=-+.|+-.
T Consensus 1611 Fk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 678888888888888775 2444556788888888888999999999999988887664 356666666666666655
Q ss_pred HHHH
Q 045105 284 AAQM 287 (601)
Q Consensus 284 ~a~~ 287 (601)
.+..
T Consensus 1689 ~vE~ 1692 (1710)
T KOG1070|consen 1689 NVEY 1692 (1710)
T ss_pred hHHH
Confidence 5443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=49.40 Aligned_cols=33 Identities=30% Similarity=0.643 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN 93 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 93 (601)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-06 Score=48.81 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 045105 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEP 92 (601)
Q Consensus 60 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 92 (601)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0014 Score=56.93 Aligned_cols=238 Identities=11% Similarity=0.076 Sum_probs=153.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
++-+--.|++..++..-+..... +-++..--.+-++|...|.+..... +.+... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcch
Confidence 44455567777777766654432 2344444455667777776654332 222221 3333333333333322333
Q ss_pred cc-hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 110 LS-LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 110 ~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
.+ ....+.+++.......+......-...|++.|++++|++.+.. ..+......=+..+.+..+++-|.+.+++|.+
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22 2334555555554444444444555678899999999999988 34555666667778889999999999999986
Q ss_pred cCCCCCeeehHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Q 045105 189 LGVQRGIISWNSMISGYVD----NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQS 264 (601)
Q Consensus 189 ~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (601)
. -+..|.+.|..++.+ .+...+|.-+|++|. ....|+..+.+-...++...+++++|+.+++.........
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s--~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS--EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh--cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 4 345666766666654 456899999999986 3488999999999999999999999999999999887544
Q ss_pred chhHHHHHHHHHHhcCCH
Q 045105 265 DTFVGGALVEMYCRYQDL 282 (601)
Q Consensus 265 ~~~~~~~li~~~~~~g~~ 282 (601)
.....|.++.+ ...|..
T Consensus 241 petL~Nliv~a-~~~Gkd 257 (299)
T KOG3081|consen 241 PETLANLIVLA-LHLGKD 257 (299)
T ss_pred HHHHHHHHHHH-HHhCCC
Confidence 33334444443 344443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0006 Score=71.50 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=91.4
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH------
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA------ 94 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------ 94 (601)
.+...+..|+..+...+++++|.++.+...+ ..|-....|-.+...+.+.++.+.+..+ .+... +..+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 3456788999999999999999999997776 3333444455555566677766665554 32221 11111
Q ss_pred -------------hhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch
Q 045105 95 -------------RTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV 161 (601)
Q Consensus 95 -------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (601)
..+..+..+|.+.|+.+++..+++++++.. +-|+.+.|.+.-.|... +.++|.+++.+..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV----- 176 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI----- 176 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----
Confidence 345555556666666666666666666665 44566666666666666 6666666655433
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
..+...+++.++.++|.++..
T Consensus 177 ------~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 177 ------YRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred ------HHHHhhhcchHHHHHHHHHHh
Confidence 224444455555555555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.1e-06 Score=48.69 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD 432 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (601)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00095 Score=57.55 Aligned_cols=197 Identities=13% Similarity=0.153 Sum_probs=134.8
Q ss_pred CCchhhHHHHHHHHHHh---C-CCCchh-HHhHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHHHHHcCChhh
Q 045105 345 LATMERGKQVHAYAIRC---G-YDSDVH-IGTALVDMYAKCGSLKHARLAYKRIST--PDLV-SQNAMLTAYAMHGHGKE 416 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~ 416 (601)
..+.++..+++..+... | ..++.. +|..++-+...+|+.+.|..+++.+.. |... .-..-..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34566666666665532 3 344433 344566666778888888888877652 2211 11111122445689999
Q ss_pred HHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 045105 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P 495 (601)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (601)
|+++++.+++.. +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.--++++ -
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999875 55566777666667777888888887744333 36788899999999999999999999999888 3
Q ss_pred CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 496 MAP-DSVMWGALLGGCVSH---GNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 496 ~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
..| ++..+..+...+.-. .+.+.+.+.|.++.++.|.+...+..+..+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 455 666777777665433 367888999999999988666655554433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=59.54 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=84.1
Q ss_pred HHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 045105 420 HFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA 497 (601)
Q Consensus 420 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 497 (601)
.+++... ..|+. .....+...+...|++++|...++.....+ +.+...+..+..++.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 34543 345566677788889999998887765544 445677788888888899999999888876 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 498 P-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 498 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
| +...+..+...+...|+++.|...++++.+..|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 5667777778888899999999999999999986654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.3e-06 Score=60.86 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=60.2
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PMAP---DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLART 556 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (601)
.|++++|+.+++++ ...| +...+-.+...|.+.|++++|.+++++ .+.+|.++.....++.++.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888887 2223 445566678888899999999999988 777777777777889999999999999998
Q ss_pred HHH
Q 045105 557 RQK 559 (601)
Q Consensus 557 l~~ 559 (601)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.6e-05 Score=60.04 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=66.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLA 541 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 541 (601)
++..+...+.+.|++++|.+.|+++ ...|+ ...+..+...+...|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666677777777777777766 22232 2345556677777788888888888888777764 44677777
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++.+.|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 788888888888888887777653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=55.53 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=53.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+...+...|++++|.+.++++.+..|+++..+..++.++.+.|++++|...++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788899999999999999999999999999999999999999999999999887653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=56.04 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-CHHHHHHHHHHHhhcC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG-RWSDLARTRQKMKDRR 564 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~ 564 (601)
+..+|..+...+...|++++|+..++++++.+|+++.++..++.++...| ++++|.+.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999999999999999999999999999 7999999999876644
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.4e-06 Score=47.44 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP 431 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (601)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.3e-05 Score=56.87 Aligned_cols=94 Identities=19% Similarity=0.318 Sum_probs=77.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
+..+...+...|++++|...++++ ...| +...+..+...+...|+++.|.+.++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778889999999998876 3344 44667777888888899999999999999999988889999999999999
Q ss_pred CHHHHHHHHHHHhhcC
Q 045105 549 RWSDLARTRQKMKDRR 564 (601)
Q Consensus 549 ~~~~A~~~l~~~~~~~ 564 (601)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00082 Score=57.92 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHH-HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSA-LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 478 (601)
.|..++-+....|+.+.|..+++++... + |.+.-...+ .--+...|.+++|+++++...... +.|..++.--+-..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 4556667777889999999999999887 3 554322222 223456889999999997766655 55666777666667
Q ss_pred hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC---CHHHH
Q 045105 479 SRAGELGEAYEFIKKI--PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG---RWSDL 553 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 553 (601)
-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.++++.=..|.++..+..++.++.-.| ++.-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888888877666 345689999999999999999999999999999999999999999999887665 56778
Q ss_pred HHHHHHHhhcCCccC
Q 045105 554 ARTRQKMKDRRMHKS 568 (601)
Q Consensus 554 ~~~l~~~~~~~~~~~ 568 (601)
++++.+..+...+..
T Consensus 211 rkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 211 RKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHhChHhH
Confidence 888888777665333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=68.47 Aligned_cols=127 Identities=10% Similarity=0.094 Sum_probs=98.3
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGS 448 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (601)
...+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.+... +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566667778888889999988887666666778888888888889999999988752 3355566666777889999
Q ss_pred hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 045105 449 IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497 (601)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (601)
++.|+.+.+...... +-+..+|..|..+|...|++++|+-.++.++..
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999997655532 334568999999999999999999999888643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=65.60 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=93.6
Q ss_pred CcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCCchHHH
Q 045105 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSH---GNLEFGQIAADRLIELEPNNTGNYVM 539 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (601)
+-|...|-.|...|...|+...|..-|.+. .+. +++..+..+..++..+ .+..++.++++++...+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567889999999999999999999999887 334 4677777777776543 35789999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcc
Q 045105 540 LANLFAYAGRWSDLARTRQKMKDRRMHKSPGCS 572 (601)
Q Consensus 540 l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 572 (601)
|+..++..|++.+|...|+.|.+..+.-+|+.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999999987777644
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00043 Score=56.99 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=47.1
Q ss_pred cCChhhHHHHHHHHHHCCCCccHH---hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCc--hHHHHHHHHhhhcCChH
Q 045105 411 HGHGKEGIAHFRRILASGFRPDHI---SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSL--KHYTCMVDLLSRAGELG 485 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 485 (601)
.++...+...++.+.+.. +.+.. ....+...+...|++++|...|+.+......|+. ...-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555555532 11111 2222334445555555555555444443322211 12222344444555555
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045105 486 EAYEFIKKIPMA-PDSVMWGALLGGCVSHGNLEFGQIAADR 525 (601)
Q Consensus 486 ~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 525 (601)
+|+..++..... .....+......+.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443211 1222333333444444444444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.025 Score=53.47 Aligned_cols=452 Identities=13% Similarity=0.061 Sum_probs=227.8
Q ss_pred CCCCchhHHHHHhhCCC---CCcc------chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHH--hhc
Q 045105 4 KCGSLDDAKKVFKMMPE---RDCV------SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGF--TQN 72 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~------~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~--~~~ 72 (601)
+++++.+|+++|.++-+ .+++ .-+.++++|-. ++.+.....+..+.+..+ ...|-.+..++ -+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG----KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHh
Confidence 56889999999999874 2322 23456666655 456666666666665322 23344444433 367
Q ss_pred CChHHHHHHHHHHHHc--CCCCC------------HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCC----CchHHHHH
Q 045105 73 GYDEEAIGMLFRMQAE--GLEPN------------ARTLSSVLPACARLQKLSLGKEFHGYITRNGFM----SNPFVVNG 134 (601)
Q Consensus 73 ~~~~~a~~~~~~m~~~--~~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 134 (601)
+.+++|.+.+....++ +..|. -.-=+..+.++...|++.++..+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8888998888877665 32221 111234556677888888888888877755433 67778877
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC-
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSI---KNE-VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS- 209 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~- 209 (601)
++-.+++. .|-++.+ -|. .-|--++..|.+.=+. ++.-.-..+-|.......++....-..
T Consensus 173 ~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 173 AVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred HHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 66655553 1211110 011 1233333333322111 111001112333333444444333221
Q ss_pred -ChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHhcccCCHHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHH
Q 045105 210 -LYDEAFSMFRDLLMRDGIEPTSFTF-GSVLIACADMNSLRKGKEIHALAIALGLQS----DTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 210 -~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 283 (601)
+..--+++++.-.. .-+.|+.... ..+...+.+ +.+.+..+.+.+....+.+ =..++..++....+.++..
T Consensus 239 e~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 239 ERLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred hhccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22222333333222 5566664432 223333333 5555555555554443221 1345667777778888888
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHH-HhcCCCchhhHHHHHHHHHHhC
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS-ACSSLATMERGKQVHAYAIRCG 362 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~ 362 (601)
.|.+.+.-+. .. .|+..... ..-.+..++..++. -=....++..=..+|.......
T Consensus 316 ~a~q~l~lL~--------~l----dp~~svs~-----------Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D 372 (549)
T PF07079_consen 316 EAKQYLALLK--------IL----DPRISVSE-----------KLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD 372 (549)
T ss_pred HHHHHHHHHH--------hc----CCcchhhh-----------hhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence 8877776221 11 22222110 00011111111110 0000011222233444444333
Q ss_pred CCCchhHHhHHH---HHHHhcCC-hHHHHHHHhcCCC---CChhhHHHHH----HHHHH---cCChhhHHHHHHHHHHCC
Q 045105 363 YDSDVHIGTALV---DMYAKCGS-LKHARLAYKRIST---PDLVSQNAML----TAYAM---HGHGKEGIAHFRRILASG 428 (601)
Q Consensus 363 ~~~~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~ll----~~~~~---~~~~~~a~~~~~~m~~~~ 428 (601)
+.. .....-|+ .-+-+.|. -++|..+++.+.+ -|...-|... .+|.+ ...+.+-+.+-+-+.+.|
T Consensus 373 iDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 373 IDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred ccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 321 11111122 22333444 6778888877663 3433333322 22322 233455555556666778
Q ss_pred CCccHHh----HHHHHH--HHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHH
Q 045105 429 FRPDHIS----FLSALS--ACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVM 502 (601)
Q Consensus 429 ~~p~~~~----~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 502 (601)
+.|-.+. -+.|.+ .+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++..+| |+..+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~ 527 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERM 527 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--Cchhh
Confidence 7774432 333333 24567888887766555443 67899999988888889999999999999986 56665
Q ss_pred HHH
Q 045105 503 WGA 505 (601)
Q Consensus 503 ~~~ 505 (601)
+++
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=70.09 Aligned_cols=107 Identities=10% Similarity=0.093 Sum_probs=86.9
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 517 (601)
...+...|++++|+..|+...... +-+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 455677899999999997666543 334667888889999999999999999888 4455 5677888888999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.|...++++.+++|+++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999888777776664443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.6e-05 Score=54.54 Aligned_cols=55 Identities=11% Similarity=0.303 Sum_probs=48.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...|++++|.+.++++.+.+|+++.+...++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678999999999999999999999999999999999999999999998876664
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.3e-05 Score=53.45 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=54.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...|.+.++++.|.++++++.+.+|+++..+...+.++.+.|++++|.+.+++..+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999987775
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.053 Score=55.77 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=148.0
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHH--HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcc
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGG--FTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLS 111 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 111 (601)
...+++.+|+.....+.+.. ||.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.+
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 45688999999999988753 3332 3334443 46899999999999988876544 8889999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH----HHHHHHhhcCCCCchhHHHHHHHHHhcC-C---------HH
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML----SALKIFSKFSIKNEVSCNTIIVGYCENG-N---------VA 177 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~ 177 (601)
++..+|+..... .|+......+..+|.+.+++. .|+++++..+. +...|-+++....+.- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999875 566888888889999987764 45666665543 4444444444443321 1 23
Q ss_pred HHHHHHHHHHhcCCCC-CeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 178 EARELFDQMEHLGVQR-GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 178 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
-|.+.++.+...+-+. +..-...-...+...|.+++|++++..-..+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666543111 111122223445667889999999943333233333444445566777788888888888888
Q ss_pred HHHcCC
Q 045105 257 AIALGL 262 (601)
Q Consensus 257 ~~~~~~ 262 (601)
+...|.
T Consensus 252 Ll~k~~ 257 (932)
T KOG2053|consen 252 LLEKGN 257 (932)
T ss_pred HHHhCC
Confidence 887763
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0012 Score=54.41 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch--HHHHHHHHHHHhcCCHH
Q 045105 72 NGYDEEAIGMLFRMQAEGLEPN---ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP--FVVNGLVDVYRRCGDML 146 (601)
Q Consensus 72 ~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~ 146 (601)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++. .....|..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 666666666666666642 112 122223335556667777777777777665522221 23334556666667777
Q ss_pred HHHHHHhhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 045105 147 SALKIFSKFSIK--NEVSCNTIIVGYCENGNVAEARELFDQ 185 (601)
Q Consensus 147 ~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 185 (601)
+|+..++....+ ....+......+.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777766654422 222344455555566666666655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0047 Score=50.62 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=96.3
Q ss_pred CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CCC---CHHHHH
Q 045105 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MAP---DSVMWG 504 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~ 504 (601)
..|....-..|..++...|+..+|...|.....--+.-|....-.+.++....+++.+|...++++. ..| ++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3566665666777888888888888888665554455666677777788888888888888887762 222 233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.+.+.+...|.++.|+..++.+....| ++......+.-+.++|+.++|..-+.+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 667778888888888888888888888 666666677778888888887776555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=52.49 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=53.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcC--------CcchHHHHHHHHHHhcCCCchHHHHH
Q 045105 64 AVIGGFTQNGYDEEAIGMLFRMQAEGL-EPNARTLSSVLPACARLQ--------KLSLGKEFHGYITRNGFMSNPFVVNG 134 (601)
Q Consensus 64 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 134 (601)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566777777777777777777 777777777777766542 23345567777777777777777777
Q ss_pred HHHHHHh
Q 045105 135 LVDVYRR 141 (601)
Q Consensus 135 l~~~~~~ 141 (601)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.042 Score=53.19 Aligned_cols=159 Identities=10% Similarity=0.102 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHH-HHhcCCCcCchHHHHHHH
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDL-MAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~ 476 (601)
.+|-.+|+.-.+..-...|..+|.+..+.+..+ +...+++++..+|. ++...|.++|+. ++..| -++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 467778888888888999999999999998888 56688888887774 788999999954 34433 33444567788
Q ss_pred HhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----CchHHHHHHHHHHc
Q 045105 477 LLSRAGELGEAYEFIKKIP---MAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN----TGNYVMLANLFAYA 547 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 547 (601)
.+...++-..|..+|++.. +.| ...+|..++.--..-||...+.++-++.....|.+ -..-..+++-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 8889999999999999882 233 35789999999999999999999999988877722 12334455555555
Q ss_pred CCHHHHHHHHHHH
Q 045105 548 GRWSDLARTRQKM 560 (601)
Q Consensus 548 g~~~~A~~~l~~~ 560 (601)
+.+..-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 5554444433333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00042 Score=66.52 Aligned_cols=120 Identities=9% Similarity=0.160 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 045105 159 NEVSCNTIIVGYCENGNVAEARELFDQMEHL--GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236 (601)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 236 (601)
+......+++.+....+++.+..++...... ....-..|.+++++.|.+.|..+.++.+++.=.. .|+-||.++++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHH
Confidence 3444555566666666666666666666543 2223344556777778888777888877777665 777788888888
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 045105 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY 279 (601)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (601)
+|..+.+.|++..|.++...|..++...+..++..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888777777777776666666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00046 Score=54.67 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=65.8
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCC-c-CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVK-P-SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALL 507 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~ 507 (601)
++..+...+.+.|++++|...+..+...... + ....+..+..++.+.|++++|.+.++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666677777777777554443211 1 1234555677777777777777777765 22233 34566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
..+...|+.+.|...++++.+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888887655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.039 Score=52.20 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 489 EFIKKIPMAP----DSVMWGALLGG--CVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 489 ~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
..+++.|+.| +...-+.|..| +..+|++.++.-.-.-+.+..| .+.+|..++-++....++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3445555443 33455566665 4578999999888888888999 8999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.039 Score=51.71 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
.+..+.-+...|+...|..+-.+.. -|+..-|..-+.+++..++|++-.++-.. +-++.-|..+++++.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444555555555555444431 35555555556666666666555544221 1123445555666666
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 045105 481 AGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIA 522 (601)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 522 (601)
.|+..+|..++.+++ +..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHH
Confidence 666666666665532 12233445555555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.2e-05 Score=43.46 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=19.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEG 89 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 89 (601)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666777777777777777777666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=64.84 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 045105 441 SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 518 (601)
.-+.+.+++.+|+..|....... +-|...|..-..+|.+.|.++.|++-.+.. .+.| -...|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45678899999999997766543 344556666778899999999999988877 5666 46789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 519 GQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
|++.|+++++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999888544444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=52.74 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCeeehHHHHHHHHhCC--------ChhHHHHHHHHHHHcCCCCCChhhH
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGV-QRGIISWNSMISGYVDNS--------LYDEAFSMFRDLLMRDGIEPTSFTF 234 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~p~~~~~ 234 (601)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+. .+++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3445556666888888888888888888 788888888887766543 23356677777776 6677777777
Q ss_pred HHHHHHhc
Q 045105 235 GSVLIACA 242 (601)
Q Consensus 235 ~~ll~~~~ 242 (601)
+.++..+.
T Consensus 108 nivl~~Ll 115 (120)
T PF08579_consen 108 NIVLGSLL 115 (120)
T ss_pred HHHHHHHH
Confidence 77776543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0005 Score=58.62 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
.+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|...++++.+..|+++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555666667777777777777765 22222 356777778888889999999999999999998888888888888
Q ss_pred HHcCC--------------HHHHHHHHHHHhhcC
Q 045105 545 AYAGR--------------WSDLARTRQKMKDRR 564 (601)
Q Consensus 545 ~~~g~--------------~~~A~~~l~~~~~~~ 564 (601)
...|+ +++|.+++++....+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 88776 466666666665544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.5e-05 Score=42.66 Aligned_cols=29 Identities=45% Similarity=0.879 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEHLG 190 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (601)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00064 Score=65.29 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=54.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNE-TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
...+++.+....+.+.+..++-..+..... ..-..|.+++|+.|...|..+.+++++..=...|+-||..+++.|+..+
T Consensus 69 ld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 69 LDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 333444444444444455544444432111 1112333455555555555555555555555555555555555555555
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 149 l~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555544444444444444443333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00071 Score=60.03 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=80.5
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCC
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGE 483 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 483 (601)
.-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+..... .|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 4477889999999999999995 55 4566777788999999999999988665443 333 5688999999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 045105 484 LGEAYEFIKKI-PMAPDSVMWGALLGG 509 (601)
Q Consensus 484 ~~~A~~~~~~~-~~~~~~~~~~~l~~~ 509 (601)
+++|++.|++. .+.|+..+|..=+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999887 788987777654444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=63.61 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=79.0
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++...... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455677899999999999999863 3345678888889999999999999997766643 33566788888999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Q 045105 485 GEAYEFIKKI-PMAPDSVMWGALL 507 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~~~~~~~~l~ 507 (601)
++|+..|++. .+.|+.......+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999887 4566655544444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=49.19 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=49.9
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+...+.+.|++++|++.|+++ ...| +...|..+...+...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999988 4456 567788888889999999999999999999999764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0042 Score=53.93 Aligned_cols=134 Identities=9% Similarity=0.085 Sum_probs=82.3
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHH
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--------MAPDSVMWGALLG 508 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~ 508 (601)
..++..+.-.|.+.-....+..+.+...+.++.....|++.-...|+.+.|..+|++.+ ..-+..+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444555555666666666555555545555555666666666677666666666431 1112222222333
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCC
Q 045105 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 570 (601)
.|.-++++..|...+.++...+|.++...+.-+-|+.-.|+..+|.+.++.|+++.+++..-
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 34455677777777777777777777777777777777788888888888777777655443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.021 Score=53.13 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCC-----ccHH-hHHHHHHHHhccCchHHHHHHHHHHHhc--CCCcC--chH
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFR-----PDHI-SFLSALSACVHAGSIKTGSEFFDLMAYY--DVKPS--LKH 470 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~ 470 (601)
+..+...+.+.|++++|..+|++....... .+.. .|...+-++...|++..|.+.++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 444566677777788888887777654322 1221 2223333455567777777777554432 22222 224
Q ss_pred HHHHHHHhhh--cCChHHHHHHHHhCCCCCCHHHHH
Q 045105 471 YTCMVDLLSR--AGELGEAYEFIKKIPMAPDSVMWG 504 (601)
Q Consensus 471 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~ 504 (601)
...|+.++-. ...+.+++.-|+.+. +.|..--.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~ 272 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTK 272 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHH
Confidence 4555555532 234556666666664 44544333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=55.08 Aligned_cols=113 Identities=13% Similarity=0.194 Sum_probs=53.7
Q ss_pred HHHHhhC--CCCCccchHHHHHHHHh-----cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 045105 12 KKVFKMM--PERDCVSWNSVVTACAA-----NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFR 84 (601)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 84 (601)
.+.|++. ..++-.+|..++..|.+ .|.++-....+..|.+. +...|..+|+.|++.+=+.. +- -..+|+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~-fv-p~n~fQ~ 110 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGK-FV-PRNFFQA 110 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCC-cc-cccHHHH
Confidence 4445554 23555555555555543 24444445555555554 55555566665555544311 10 0000000
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 85 MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+ ...| -.+-+-|.+++++|...|+.||..++..+++.+++.+.
T Consensus 111 ~---------------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 E---------------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred H---------------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0000 01234456666666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.005 Score=61.92 Aligned_cols=139 Identities=15% Similarity=0.085 Sum_probs=74.1
Q ss_pred CCCChhhHHHHHHHHHHc-----CChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccC--------chHHHHHHHHHH
Q 045105 394 STPDLVSQNAMLTAYAMH-----GHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAG--------SIKTGSEFFDLM 459 (601)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g--------~~~~a~~~~~~~ 459 (601)
...+...|...+.+.... +....|..+|++.++. .|+. ..|..+..++.... +...+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356777888887775432 2366889999999884 6664 34444433332111 111222222111
Q ss_pred Hhc-CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 460 AYY-DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 460 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
... ..+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 111 12223344555544444556666666666655 3455555555566666666666666666666666666444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=56.30 Aligned_cols=93 Identities=14% Similarity=-0.076 Sum_probs=72.0
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
...|..+...+...|++++|+..|++. ...|+ ..+|..+...+...|++++|.+.++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566667777788888888888776 22222 3478888888999999999999999999999988888888888
Q ss_pred HHH-------HcCCHHHHHHHHHHH
Q 045105 543 LFA-------YAGRWSDLARTRQKM 560 (601)
Q Consensus 543 ~~~-------~~g~~~~A~~~l~~~ 560 (601)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0031 Score=53.73 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc--HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHH
Q 045105 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD--HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM 474 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 474 (601)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+....... +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777778888888888888888876533322 2466777777888888888888885544432 2234455556
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 475 VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
..+|...|+...+..-++.. ...+++|.+.++++.+.+|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666655544332221 123677888888888888866 4455555544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.025 Score=50.94 Aligned_cols=174 Identities=11% Similarity=0.098 Sum_probs=104.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CChh-h---HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH--HhHHHHHHHHh
Q 045105 373 LVDMYAKCGSLKHARLAYKRIST--PDLV-S---QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH--ISFLSALSACV 444 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~ 444 (601)
....+...|++++|...|+.+.. |+.. . .-.+..+|.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445567888888888888763 3222 1 134556778888888888888888875 3433 23434444433
Q ss_pred c--cC---------------chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 045105 445 H--AG---------------SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALL 507 (601)
Q Consensus 445 ~--~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 507 (601)
. .+ +...+.+.+ ..+..+++-|-...-..+|...+..+....-...+ .+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~-~ia 182 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF------------RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL-SVA 182 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH------------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 10 111111111 12233444444444445554444433211111111 345
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.-|.+.|.+..|..-++.+++..|+.+ .++..+..+|...|..++|.+++..+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 568889999999999999999988744 577788899999999999999876553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=48.84 Aligned_cols=94 Identities=18% Similarity=0.052 Sum_probs=59.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA 105 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (601)
+..+...+...|++++|...++...+ ..+.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 44556666677777777777777665 233444566667777777777777777777766542 223345555666666
Q ss_pred hcCCcchHHHHHHHHHH
Q 045105 106 RLQKLSLGKEFHGYITR 122 (601)
Q Consensus 106 ~~~~~~~a~~~~~~~~~ 122 (601)
..|+++.|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666665544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=53.03 Aligned_cols=88 Identities=10% Similarity=-0.000 Sum_probs=74.7
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 475 VDLLSRAGELGEAYEFIKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
..-+...|++++|..+|+-+. ..| +..-|..|...|-..+++++|...|..+..++++||....+.+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334568899999999998772 233 566677777778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 045105 553 LARTRQKMKD 562 (601)
Q Consensus 553 A~~~l~~~~~ 562 (601)
|+.-|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999887766
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00014 Score=42.03 Aligned_cols=33 Identities=36% Similarity=0.582 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 523 ADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.025 Score=52.61 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=88.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhccc-CCHHHHHHHHHHHHHc----CCC-CchhHHHHHHH
Q 045105 201 MISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADM-NSLRKGKEIHALAIAL----GLQ-SDTFVGGALVE 274 (601)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~ 274 (601)
.+..|...|++..|-.++..+- ..+... |+++.|.+.|++..+. +.+ .-..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA----------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA----------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH----------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3455566666666666555443 355566 7888888888776543 211 11345667788
Q ss_pred HHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHH
Q 045105 275 MYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV 354 (601)
Q Consensus 275 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 354 (601)
.+.+.|++++|..+|+ ++.......+...+++ ...|...+-++...|++..|...
T Consensus 164 l~~~l~~y~~A~~~~e----------~~~~~~l~~~l~~~~~---------------~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYE----------EVAKKCLENNLLKYSA---------------KEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HHHHTT-HHHHHHHHH----------HHHHTCCCHCTTGHHH---------------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHhCCHHHHHHHHH----------HHHHHhhcccccchhH---------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999998 3332221211111111 01222333355556788888888
Q ss_pred HHHHHHh--CCCCc--hhHHhHHHHHHHh--cCChHHHHHHHhcCCCCChhhHHHHH
Q 045105 355 HAYAIRC--GYDSD--VHIGTALVDMYAK--CGSLKHARLAYKRISTPDLVSQNAML 405 (601)
Q Consensus 355 ~~~~~~~--~~~~~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~ll 405 (601)
++..... ++..+ -.....|+.++-. ...+.++..-|+.+.+.|..--..|+
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 8876644 22222 3444556666644 33466677777777766665444444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0029 Score=49.29 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=60.6
Q ss_pred HHHHhhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI---PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN---NTGNYVMLANLFA 545 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 545 (601)
+..++-..|+.++|+.++++. +.... ...+-.+.+.+...|++++|..++++..+..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666777777777777765 22221 334556667778888888888888888887776 4555666677788
Q ss_pred HcCCHHHHHHHHHHHh
Q 045105 546 YAGRWSDLARTRQKMK 561 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~ 561 (601)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888888765443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00042 Score=50.74 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=46.1
Q ss_pred cCChhhHHHHHHHHHHCCC-CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHH
Q 045105 411 HGHGKEGIAHFRRILASGF-RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 489 (601)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776532 12333444466777777777777777754 22211 112333345666777777777777
Q ss_pred HHHh
Q 045105 490 FIKK 493 (601)
Q Consensus 490 ~~~~ 493 (601)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00094 Score=56.56 Aligned_cols=88 Identities=13% Similarity=0.235 Sum_probs=58.1
Q ss_pred CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC----------------ChhHHH
Q 045105 157 IKNEVSCNTIIVGYCE-----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS----------------LYDEAF 215 (601)
Q Consensus 157 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------~~~~a~ 215 (601)
.++-.+|..++..|.+ .|+++=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4455566666666654 5788888888999999999999999999998875421 122345
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccC
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMN 245 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 245 (601)
+++++|.. .|+.||..|+..+++.+.+.+
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 55555554 555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0064 Score=56.27 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH-HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA-CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888887543 2222333333322 22346667789999554443 55667788888888
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 478 LSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+.+..+.+++.+..|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 88999999999999887 22233 358888888888999999999999999988775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=58.01 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=50.5
Q ss_pred hhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHHHHHHHcCCH
Q 045105 479 SRAGELGEAYEFIKKI-PMAPDS----VMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLANLFAYAGRW 550 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 550 (601)
.+.|++++|+..|+.+ ...|+. ..+-.+...|...|+++.|...++.+.+..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4456666666666555 122322 344455566666677777777777776666653 33444556666667777
Q ss_pred HHHHHHHHHHhhcC
Q 045105 551 SDLARTRQKMKDRR 564 (601)
Q Consensus 551 ~~A~~~l~~~~~~~ 564 (601)
++|.+++++..+..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 77777776665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00099 Score=46.39 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=44.1
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
.+.|++++|++.|+.+.+ ..|-+...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 456778888888888777 34557777777888888888888888888887765 5554444443
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.31 Score=48.92 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=63.9
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CchhHHH--------H--HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 045105 126 MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-NEVSCNT--------I--IVGYCENGNVAEARELFDQMEHLGVQRG 194 (601)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--------l--i~~~~~~g~~~~a~~~~~~m~~~g~~~~ 194 (601)
.|.+..|..+.......-+++-|+..|-+...- .+..-.. + ...-+--|.+++|+++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 577778877777766666677777666555421 1100000 0 111223478888888887776443
Q ss_pred eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----hhhHHHHHHHhcccCCHHHHHHHH
Q 045105 195 IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT----SFTFGSVLIACADMNSLRKGKEIH 254 (601)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~ 254 (601)
..|..+.+.|+|-.+.++++. .|-..| ...++.+-..++....++.|.+.|
T Consensus 765 -----LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246667778888888887753 222222 123444444444444445444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00061 Score=47.65 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=51.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHG-NLEFGQIAADRLIELEP 531 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 531 (601)
..+|..+...+...|++++|+..|++. ...| +...|..+..+|...| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888889999998888877 3345 5667888888888888 69999999999998887
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.22 Score=47.22 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=90.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHH---cCChhhHHHHHHHHHHCCCCccHHhHHHHHH
Q 045105 372 ALVDMYAKCGSLKHARLAYKRISTP-------DLVSQNAMLTAYAM---HGHGKEGIAHFRRILASGFRPDHISFLSALS 441 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (601)
.++-+|....+++...++.+.+... ....--...-++.+ .|+.++|+.++..++...-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455555555555555555532 11111123334445 6777888888877655555677777777666
Q ss_pred HHhc---------cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh----HHHHHHH---Hh----C---CCCC
Q 045105 442 ACVH---------AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL----GEAYEFI---KK----I---PMAP 498 (601)
Q Consensus 442 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~----~---~~~~ 498 (601)
.|-. ....++|...|..--+ +.|+...--.++-.+.-.|.. .+..++- .. - .-..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5531 2235677777754222 234433211122222233321 1222222 11 1 1235
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+-..+.+++.++.-.||+++|.++++++..+.|+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 777888999999999999999999999999977443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.064 Score=52.98 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChh-----------hHHHHHH
Q 045105 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PDLV-----------SQNAMLT 406 (601)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-----------~~~~ll~ 406 (601)
.-+.+...+..|-++|..|-+. .++++.....+++.+|.++-++.++ +++. -|...-.
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 3334445555666666555432 3466677777788888777777763 3322 1233345
Q ss_pred HHHHcCChhhHHHHHHHHHHC
Q 045105 407 AYAMHGHGKEGIAHFRRILAS 427 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~ 427 (601)
+|.+.|+..+|.++++++...
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 567777777777777776554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.11 Score=51.48 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=53.0
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHH----------
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MAPDSVM---------- 502 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~---------- 502 (601)
.+...+...+.+...+..|-++|..|-+ ..++++.....++|.+|..+-++.+ ..|+...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3455555556666777778888866533 2457777888899999988888875 2333321
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 503 -WGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 503 -~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
+.-.-.+|.+.|+..+|.++++++..
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12223345556666666666666544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00081 Score=41.77 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
.+|..+..+|...|++++|+++++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999988887764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.02 Score=57.71 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=95.9
Q ss_pred CCCccHHhHHHHHHHHhc--c---CchHHHHHHHHHHHhcCCCcCc-hHHHHHHHHhhhc--------CChHHHHHHHHh
Q 045105 428 GFRPDHISFLSALSACVH--A---GSIKTGSEFFDLMAYYDVKPSL-KHYTCMVDLLSRA--------GELGEAYEFIKK 493 (601)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~ 493 (601)
+.+.|...|...+++... . +....|..+|+...+. .|+- ..|..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346677888888887543 2 3367889998665554 4553 3444444433221 123344454444
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 494 I---P-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 494 ~---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
. + ...++..+.++.-.....|++++|...++++.+++| +...|..++.++...|+.++|.+.+++.....+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3 1 223557777777777778999999999999999999 6889999999999999999999999988776643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.005 Score=56.97 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=66.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA-CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVY 139 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 139 (601)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666655332 1122222222222 11134444566666666554 345555566666666
Q ss_pred HhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 140 RRCGDMLSALKIFSKFSIK------NEVSCNTIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
.+.++.+.|..+|++.... ....|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665522 2235666666666777777777777776654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.013 Score=49.67 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=30.9
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETP-NLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
.|..+...+...|++++|+..|+........++ ...+|..+...+...|++++|+..+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455555555555555555544211111 123455555555555555555555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=59.76 Aligned_cols=65 Identities=18% Similarity=0.067 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG---NYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+...|..+..+|...|++++|+..++++++++|++.. +|++++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445556666666666666666666666666665553 3666666666666666666666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.051 Score=48.97 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=89.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCCHh-h---HHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 045105 65 VIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR-T---LSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR 140 (601)
Q Consensus 65 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 140 (601)
....+...|++++|.+.|+++... -|+.. . .-.+..++.+.++++.|...++..++.-......-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344445567777777777777664 22221 1 12344556666777777777777766533222223333333322
Q ss_pred h--c---------------CCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHH
Q 045105 141 R--C---------------GDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS 203 (601)
Q Consensus 141 ~--~---------------~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (601)
. . .|...+.+.+ ..+..++.-|-...-..+|...+..+... .-..-+ .+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~ 183 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAE 183 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHH
Confidence 1 1 1111111111 12334444444444455555444444321 000111 3456
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC-CCCChhhHHHHHHHhcccCCHHHHHHHHHHHH
Q 045105 204 GYVDNSLYDEAFSMFRDLLMRDG-IEPTSFTFGSVLIACADMNSLRKGKEIHALAI 258 (601)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (601)
.|.+.|.+..|..-++.+...-. .+........+..++...|..+.|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 67777777777777777765322 22233445566677777777777776665443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.015 Score=47.10 Aligned_cols=95 Identities=7% Similarity=-0.101 Sum_probs=68.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA 105 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (601)
.-.+...+...|++++|..+|+.+.. ..+-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33355556677888888888888777 455666777777777778888888888888877664 345566667777777
Q ss_pred hcCCcchHHHHHHHHHHh
Q 045105 106 RLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~ 123 (601)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888888877776654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.17 Score=41.91 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=65.7
Q ss_pred CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHH
Q 045105 90 LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-----NEVSCN 164 (601)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~ 164 (601)
..|+...-..|..++.+.|+..+|...|++....-+-.|......+.++....+++..|...++.+.+- +..+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666777778888888888888888777666677777777777777777777777777766521 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 165 TIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
.+.+.+...|....|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4444555555555555555555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0028 Score=44.82 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=50.0
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 476 DLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
..|.+.+++++|+++++++ ...| +...|......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677889999999998887 4445 5667777778888999999999999999999996665443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0033 Score=51.89 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh-----hcCCccCCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK-----DRRMHKSPG 570 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-----~~~~~~~~~ 570 (601)
....++..+...|+++.|.+.++++...+|.+...+..++.+|...|+..+|.++++++. +.|+.|+|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 455667778889999999999999999999999999999999999999999999998874 557776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.39 Score=45.17 Aligned_cols=86 Identities=8% Similarity=0.043 Sum_probs=49.8
Q ss_pred hcCCCchhhHHHHHHHHHHh---CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH---HHHHHHcCChh
Q 045105 342 CSSLATMERGKQVHAYAIRC---GYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAM---LTAYAMHGHGK 415 (601)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~ 415 (601)
..+.|++..|.+.+.+.+.. +..++...|........+.|+.++|+.--+...+.|..-.-.+ ..++...++++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777766643 3344555555555566667777777766666665554322222 23344456666
Q ss_pred hHHHHHHHHHHC
Q 045105 416 EGIAHFRRILAS 427 (601)
Q Consensus 416 ~a~~~~~~m~~~ 427 (601)
+|.+-++...+.
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 666666665554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.04 Score=42.97 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=67.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccH--HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCc--CchHHHHHHHHhh
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDH--ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKP--SLKHYTCMVDLLS 479 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 479 (601)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++........+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677789999999999999888866553 356667788888999999999995544432110 1222223345667
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045105 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGC 510 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 510 (601)
..|+.++|++.+-..- .++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8888888888775532 23333444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0021 Score=46.24 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC---CCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIEL----EPN---NTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.+++.+...|...|++++|+..++++.++ .++ -..++..++.++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777788888888888888887764 222 245777888888888999999888887653
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.011 Score=54.85 Aligned_cols=258 Identities=13% Similarity=0.066 Sum_probs=154.9
Q ss_pred HHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHH
Q 045105 276 YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVH 355 (601)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 355 (601)
+|+.|+......+|+ ...+-| ..|..+ -..+|+.+-++|...+++++|.+++
T Consensus 27 Lck~gdcraGv~ff~----------aA~qvG-TeDl~t-----------------LSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFK----------AALQVG-TEDLST-----------------LSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHH----------HHHHhc-chHHHH-----------------HHHHHHHhcchhhhHhhHHHHHhhh
Confidence 678888888888777 444322 112222 2346888899999999999999987
Q ss_pred HHHHH--h--CCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCC----C-----CChhhHHHHHHHHHHcCC--------
Q 045105 356 AYAIR--C--GYDS-DVHIGTALVDMYAKCGSLKHARLAYKRIS----T-----PDLVSQNAMLTAYAMHGH-------- 413 (601)
Q Consensus 356 ~~~~~--~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~-----~~~~~~~~ll~~~~~~~~-------- 413 (601)
..-.. . |-+. .......|.+.+--.|.+++|.-+..+-. + .....+..+...|...|+
T Consensus 79 ~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe 158 (639)
T KOG1130|consen 79 THDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE 158 (639)
T ss_pred hhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh
Confidence 54221 1 1111 11222334445555677777765443322 0 122234445555544432
Q ss_pred ------------hhhHHHHHHHHH----HCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHH----HHhcCCCcC-chHH
Q 045105 414 ------------GKEGIAHFRRIL----ASGFRP-DHISFLSALSACVHAGSIKTGSEFFDL----MAYYDVKPS-LKHY 471 (601)
Q Consensus 414 ------------~~~a~~~~~~m~----~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~-~~~~ 471 (601)
++.|.++|.+=+ +.|-.. -...|..|-..|.-.|+++.|+...+. .++.|-+.. ...+
T Consensus 159 e~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~ 238 (639)
T KOG1130|consen 159 EKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAH 238 (639)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 223344443322 111100 112455566666667889998876622 233443332 3467
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCCchH
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-------PM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIEL----E--PNNTGNY 537 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~ 537 (601)
..|.+++.-.|+++.|.+.++.. +. .......-+|...|.-..++++|+....+-..+ + .....++
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 77889999999999999988764 21 224455567888888888899998877654443 2 1245688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
..|+.+|...|..+.|+.+.+.-+
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999999877554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.043 Score=43.70 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=65.6
Q ss_pred HHHhhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHH
Q 045105 475 VDLLSRAGELGEAYEFIKKIP----MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG---NYVMLANLFAY 546 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 546 (601)
.....+.|++++|.+.|+.+. ..| ....--.++.+|.+.|+++.|...+++++++.|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 344567899999999998872 222 3455667888999999999999999999999998763 45555555555
Q ss_pred cCC---------------HHHHHHHHHHHhhcC
Q 045105 547 AGR---------------WSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~---------------~~~A~~~l~~~~~~~ 564 (601)
+.. ...|..-|+++.++-
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 554 666777777766555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0058 Score=50.42 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCCHhh
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA-----EGLEPNART 96 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 96 (601)
++..+...|++++|+.+.+.+.. ..|.+...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666666666666666 4455666666666666666666666666666532 255555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.12 Score=48.48 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=38.2
Q ss_pred hcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH
Q 045105 480 RAGELGEAYEFIKKI-PMAP-----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (601)
+.|++.+|.+.+.+. .+.| +...|........+.|+.++|+...+.+.+++|.-...+..-+.++...++|++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554443 2222 2223333333344445555555555555555554444455555555555555555
Q ss_pred HHHHHHH
Q 045105 554 ARTRQKM 560 (601)
Q Consensus 554 ~~~l~~~ 560 (601)
.+-++..
T Consensus 341 V~d~~~a 347 (486)
T KOG0550|consen 341 VEDYEKA 347 (486)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.03 Score=50.93 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=64.2
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC--chHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS--LKHYTCMVDLLSRAGELGEAYEFIKKIP-MAPD----SVMWGALL 507 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 507 (601)
.|...+....+.|++++|...|+.+.+...... ...+..+..+|...|++++|...|+++- .-|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555777777777755554321111 2355567777888888888888877761 1232 33444455
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
..+...|+++.|.+.++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5677889999999999999999886553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.62 Score=43.55 Aligned_cols=272 Identities=13% Similarity=0.020 Sum_probs=124.3
Q ss_pred CCCchhHHHHHhhCC---CCCccchHHHHHHH--HhcCChHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHhhcCChHH
Q 045105 5 CGSLDDAKKVFKMMP---ERDCVSWNSVVTAC--AANGLVLEALECLERMSSLDNETPNLV--SWSAVIGGFTQNGYDEE 77 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~~~~~~ 77 (601)
.|+-..|.+.-.+.. ..|-...-.++.+- .-.|+++.|.+-|+.|... |... -...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHH
Confidence 355555555554443 23444444444433 2356666666666666542 2221 12222222334566666
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhc-CCCchH--HHHHHHHHHH--h-cCCHHHHHH
Q 045105 78 AIGMLFRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNG-FMSNPF--VVNGLVDVYR--R-CGDMLSALK 150 (601)
Q Consensus 78 a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~--~~~~l~~~~~--~-~~~~~~a~~ 150 (601)
|...-++.-+. .|. .-.....+...+..|+++.|+++++.-.... +.++.. .-..|+.+-. . .-|...|..
T Consensus 173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 66665555443 222 2345556666666666666666666554332 233321 1112222111 1 122333333
Q ss_pred HHhhcC--CCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045105 151 IFSKFS--IKNEV-SCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGI 227 (601)
Q Consensus 151 ~~~~~~--~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (601)
.-.+.. .||.. .-..-..++.+.|++.++-.+++.+-+....|++ -..|.+...-+.+++-++....-...
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 322222 23322 2223345566666666666666666655444442 22233332233444444443333334
Q ss_pred CCCh-hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCCHHHHHHHhh
Q 045105 228 EPTS-FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR-YQDLVAAQMAFD 290 (601)
Q Consensus 228 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~ 290 (601)
+||. .....+..+....|++..|..--+.... ..|....|..|.+.-.. .||-.++..++.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 4443 3344445555566666555544333332 24444555555444333 366666655554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.89 Score=43.40 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
...+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-.. .++.+..--+..+..+.+
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~-~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL-KFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH-hCCCchHHHHHHHHHHHH
Confidence 334444444444555555555555555 3444455555555443 3455555555532111 111112222334444455
Q ss_pred cCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 481 AGELGEAYEFIKKI--PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 481 ~g~~~~A~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
-++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.+..|
T Consensus 479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 55555555555533 11111 34555555555555555555555555555555
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.83 Score=42.99 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=88.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 371 TALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
+.-+.-+...|+...|.++-.+..-|+..-|...+.+|+..++|++-..+... +-++.-|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455566778888898888888888888999999999999999877765432 223478888999999999999
Q ss_pred HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045105 451 TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGC 510 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 510 (601)
+|..+... + .+..-+..|.+.|++.+|.+.--+.. |...+..+...+
T Consensus 255 eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 98888754 1 12456788899999999987766543 444444443333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.15 Score=44.75 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=90.5
Q ss_pred HHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHHHHHHHhccC
Q 045105 376 MYAKCGSLKHARLAYKRIST--PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLSALSACVHAG 447 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g 447 (601)
.+...|++.+|...|+.+.. |+ ....-.++.++.+.|+++.|...++++++. .|+.. .+...+.+.+.-.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34556777777777766651 21 123445667777888888888888887774 44432 2222222222111
Q ss_pred c-------------hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045105 448 S-------------IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514 (601)
Q Consensus 448 ~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 514 (601)
. ..+|.. .+..++.-|=......+|...+..+........ -.+...|.+.|
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~~~~ 155 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYYKRG 155 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHCTT
T ss_pred hCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcc
Confidence 1 112222 334444555555555555555444421111111 12455688999
Q ss_pred ChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHH
Q 045105 515 NLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 555 (601)
.+..|..-++.+++..|+.+ .+...++.+|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999754 466778889999999885544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.026 Score=43.39 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=65.6
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-C---CchHHHHHHHHHHcCCH
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN-N---TGNYVMLANLFAYAGRW 550 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~---~~~~~~l~~~~~~~g~~ 550 (601)
++...|+.+.|++.|.+. .+.| ....|+.-..++.-.|+.++|.+-++++.++..+ . ...|..-+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888888766 4444 5677888888888888888888888888887432 2 24566667777888888
Q ss_pred HHHHHHHHHHhhcCC
Q 045105 551 SDLARTRQKMKDRRM 565 (601)
Q Consensus 551 ~~A~~~l~~~~~~~~ 565 (601)
+.|+.-|+..-+-|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888887766553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.22 Score=43.71 Aligned_cols=151 Identities=16% Similarity=0.215 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 76 EEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
+..+++|++=.. .....+++.+...+.+.-....+...++...+.++.....|.+.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455555554332 2445666777777888888888888888776777888888888888889999888888865
Q ss_pred CC----CCchhHHHHH-----HHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045105 156 SI----KNEVSCNTII-----VGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDG 226 (601)
Q Consensus 156 ~~----~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 226 (601)
.+ -|..+++.++ ..+.-.+++..|...+.++...+ ..|+..-|.-.-+..-.|+..+|++.++.|.+
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--- 314 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--- 314 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 52 2444444333 34556778888888888887654 33444444333344446788889998888876
Q ss_pred CCCChhhHHHH
Q 045105 227 IEPTSFTFGSV 237 (601)
Q Consensus 227 ~~p~~~~~~~l 237 (601)
..|...+-+.+
T Consensus 315 ~~P~~~l~es~ 325 (366)
T KOG2796|consen 315 QDPRHYLHESV 325 (366)
T ss_pred cCCccchhhhH
Confidence 55665554433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.23 Score=44.89 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=78.7
Q ss_pred CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC-CHHHHH
Q 045105 430 RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG---ELGEAYEFIKKI-PMAP-DSVMWG 504 (601)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~~ 504 (601)
+-|...|..|..+|...|+.+.|...|....+. -++++..+..+.+++.... ...++..+|+++ ...| |.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 445678999999999999999999999554332 2445566777777765432 467788899888 4455 566667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
-|...+...|++.+|...++.+.+..|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7777889999999999999999999886544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.5 Score=36.75 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=82.3
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
+.-.|..++..+++.+...+. +..-++.+|--....-+-+-..++++.+-+ -.|.. .+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHH
Confidence 345677888888888887642 344555555554444444555555544322 22221 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 488 YEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
..-+-.++ .+..-+...+......|+.|.-.+++..+...+..+|..+..++.+|.+.|+..++.+++++.=++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 223334556777888899988888988888655458999999999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.42 Score=41.86 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=38.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETP-NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
....+...|++.+|+..|+.+.......| -....-.++.++-+.|+++.|...++++.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556667888888888888776422212 2334556677777888888888888887765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.5 Score=42.00 Aligned_cols=427 Identities=12% Similarity=0.060 Sum_probs=234.6
Q ss_pred HHHhhCCC--CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 045105 13 KVFKMMPE--RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL 90 (601)
Q Consensus 13 ~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 90 (601)
++=+++.+ .|..+|-.|+..+..++.+++..+++++|.. ..+--..+|..-|.+-...+++.....+|.+-.....
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 44555554 4677999999999999999999999999987 5666677899889988888999999999998877643
Q ss_pred CCCHhhHHHHHHHHHhcCCc------chHHHHHHHHHH-hcCCCc-hHHHHHHHHHH---Hhc------CCHHHHHHHHh
Q 045105 91 EPNARTLSSVLPACARLQKL------SLGKEFHGYITR-NGFMSN-PFVVNGLVDVY---RRC------GDMLSALKIFS 153 (601)
Q Consensus 91 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---~~~------~~~~~a~~~~~ 153 (601)
+...|...+.-..+.... ....+.|+.... .++.|- ...|+..+... -.. .+++...+.+.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 344555555444333321 112234444433 344443 23444333322 122 33455666666
Q ss_pred hcCCC---C-------chhHHHHHHHHHh-------cCCHHHHHHHHHHHHh--cCCCC----CeeehHHHHHHHHhCCC
Q 045105 154 KFSIK---N-------EVSCNTIIVGYCE-------NGNVAEARELFDQMEH--LGVQR----GIISWNSMISGYVDNSL 210 (601)
Q Consensus 154 ~~~~~---~-------~~~~~~li~~~~~-------~g~~~~a~~~~~~m~~--~g~~~----~~~~~~~li~~~~~~~~ 210 (601)
++... | -..|..=++-... .--+-.|...++++.. .|+.. +..+++..-+..
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s----- 260 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS----- 260 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc-----
Confidence 66522 1 1112111111111 1113456666666642 34332 223333321100
Q ss_pred hhHHHHHHHHHHHcCCCCCChhh--------HHHH--------------HHHhcccCCHHHHHHHHHHHHHcCCCCchhH
Q 045105 211 YDEAFSMFRDLLMRDGIEPTSFT--------FGSV--------------LIACADMNSLRKGKEIHALAIALGLQSDTFV 268 (601)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~p~~~~--------~~~l--------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (601)
...=+.+.+. ....+......+ ++.. ...+...++-+.|.+.. ..|++..+..
T Consensus 261 ~S~WlNwIkw-E~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv----~rg~~~spsL 335 (660)
T COG5107 261 DSNWLNWIKW-EMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTV----ERGIEMSPSL 335 (660)
T ss_pred cchhhhHhhH-hhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHH----HhcccCCCch
Confidence 0000111111 111232222211 1111 11223334444444432 3455544444
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhc----CCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC
Q 045105 269 GGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKED----GFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS 344 (601)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 344 (601)
...+-..|--..+-+.....|+...+....--.+.+. +...+. -+.--.++.+ ..--...|...++.-.+
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~-e~~~Ell~kr-----~~k~t~v~C~~~N~v~r 409 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNF-EYSKELLLKR-----INKLTFVFCVHLNYVLR 409 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCc-cccHHHHHHH-----HhhhhhHHHHHHHHHHH
Confidence 4445556666666666666666332221111111111 111110 1111111111 11223456677788888
Q ss_pred CCchhhHHHHHHHHHHhC-CCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChhhH-HHHHHHHHHcCChhhHHHH
Q 045105 345 LATMERGKQVHAYAIRCG-YDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLVSQ-NAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~-~~ll~~~~~~~~~~~a~~~ 420 (601)
...++.|+.+|-+..+.+ +.+++.++++++..++ .|+...|..+|+.-. -||...| +-.+..+...++-..|..+
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 888999999999999888 5788888899888776 588888999888654 3555544 4456667788888899999
Q ss_pred HHHHHHCCCCcc--HHhHHHHHHHHhccCchHHHHHHHHHHHh
Q 045105 421 FRRILASGFRPD--HISFLSALSACVHAGSIKTGSEFFDLMAY 461 (601)
Q Consensus 421 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (601)
|+..+.. +..+ ...|..+|..=..-|+...+..+-+.+..
T Consensus 489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 9866553 3333 34788888877788888777776655554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=2.3 Score=44.16 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=106.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHH----HHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAV----IGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
....-|..+.+...++-|+.+...-. .+..+-..+ .+.+-+.|++++|...|-+-... +.|+ .+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence 34456677777778888887776622 223333333 34455789999998887766543 2332 34
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch-hHHHHHHHHHhcCCHHHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV-SCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a 179 (601)
+.-+...........+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+........ -....+..+.+.+-.++|
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHH
Confidence 55555556666667778888888854 4455567889999999999888888776622111 144555556666666665
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
.-+-..... ... .+.-.+-..+++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEW---VLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhcCC
Confidence 554433321 111 12223334566777777765543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.4 Score=41.45 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=132.6
Q ss_pred HHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-----CCChh--hHHHHHHHHHH--
Q 045105 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-----TPDLV--SQNAMLTAYAM-- 410 (601)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~--~~~~ll~~~~~-- 410 (601)
-..-+.|+.+.|..+-+..-+.-. .-.-...+.+...+..|+++.|+++.+.-. +++.. .-..|+.+-..
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 334456666666666665544321 123445567777777888888877776544 23332 12223332211
Q ss_pred -cCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHH
Q 045105 411 -HGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAY 488 (601)
Q Consensus 411 -~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 488 (601)
.-+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+++.+=+....|+ .+ .+..+.+.|+. ++
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~ 312 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--AL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HH
Confidence 2335555555555544 567754 344456788899999999999977655544443 33 22233455553 33
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-CCHHHHHHHHHHHhh
Q 045105 489 EFIKKI----PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA-GRWSDLARTRQKMKD 562 (601)
Q Consensus 489 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~ 562 (601)
.-+++. ..+| +.....++..+-...|++..|..--+.+....| ....|..++.+-... |+-.+++..+-+...
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333222 2345 455666777888888999999999999999998 777888888887655 999999888776654
Q ss_pred c
Q 045105 563 R 563 (601)
Q Consensus 563 ~ 563 (601)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.12 Score=40.82 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=52.4
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhc--------------CCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSL--------------DNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
|..++..++.++++.|+.+....+++..-.. ....|+..+..+++.+|+.+|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456778888888888888888888764321 12345555666666666666666666666665544
Q ss_pred c-CCCCCHhhHHHHHHHHH
Q 045105 88 E-GLEPNARTLSSVLPACA 105 (601)
Q Consensus 88 ~-~~~p~~~~~~~ll~~~~ 105 (601)
. +++.+..+|..|++-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 3 55555556666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.1 Score=50.29 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=77.3
Q ss_pred HHHHHHHHHc-----CChhhHHHHHHHHHH-CCCCccH-HhHHHHHHHHhc---------cCchHHHHHHHHHHHhcCCC
Q 045105 402 NAMLTAYAMH-----GHGKEGIAHFRRILA-SGFRPDH-ISFLSALSACVH---------AGSIKTGSEFFDLMAYYDVK 465 (601)
Q Consensus 402 ~~ll~~~~~~-----~~~~~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~ 465 (601)
..++.+.... ...+.|+.+|.+... +.+.|+- ..|..+..++.. .....+|.++-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 4555554442 134567778888772 2245554 344444333321 112223334433333332 3
Q ss_pred cCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHH--HH
Q 045105 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM--LA 541 (601)
Q Consensus 466 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~ 541 (601)
.|......+..++.-.|+.+.|...|++. ...|| ..+|......+..+|+.++|.+.++++.+++|....+-.. .+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 34445555555556666677777777666 34554 3344444445556677777777777777777654333222 22
Q ss_pred HHHHHcCCHHHHHHHH
Q 045105 542 NLFAYAGRWSDLARTR 557 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l 557 (601)
..|+. ...++|.+++
T Consensus 416 ~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 416 DMYVP-NPLKNNIKLY 430 (458)
T ss_pred HHHcC-CchhhhHHHH
Confidence 23333 3355555553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.012 Score=42.26 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-------PM-APD-SVMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+++.+...|...|++++|++.+++. +. .|+ ..++..+...|...|++++|++.++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555666666666665555544 10 122 345666666777777777777777776654
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.079 Score=41.81 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 045105 160 EVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239 (601)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 239 (601)
..++..+|.++++.|+++....+++..- |+.++...- .+. ........|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc----------cCCCCCCCCCHHHHHHHHH
Confidence 4456666666777777666666665443 222111000 000 1122445555666666666
Q ss_pred HhcccCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHH
Q 045105 240 ACADMNSLRKGKEIHALAIA-LGLQSDTFVGGALVEM 275 (601)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 275 (601)
+++..+++..|.++++...+ .+++.+..+|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66556666666665555543 2455555555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.3 Score=42.13 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CchhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCeeehH
Q 045105 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIK-------NEVSCNTIIVGYCE---NGNVAEARELFDQMEHLGVQRGIISWN 199 (601)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (601)
.+...++-+|-...+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445555688888899999999888743 12222334445566 899999999999966555578888888
Q ss_pred HHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCChhh---HHHHHHHhcccC-CHHHHHHHH----HHHHHcCC
Q 045105 200 SMISGYVD---------NSLYDEAFSMFRDLLMRDGIEPTSFT---FGSVLIACADMN-SLRKGKEIH----ALAIALGL 262 (601)
Q Consensus 200 ~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~-~~~~a~~~~----~~~~~~~~ 262 (601)
.+.+.|-+ ....++|+..|.+.-. +.|+.++ +.+++....... .-.+..++- ..+.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 88877632 1237788888887655 4455544 333333332211 122233333 22223343
Q ss_pred C---CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 263 Q---SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 263 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
. .+--.+.+++.+..-.|+.++|.+..+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 233455688999999999999999988
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.036 Score=51.84 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=95.6
Q ss_pred HHHHhccCchHHHHHHHHHHHhc-----CCC---------cCchHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHH
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYY-----DVK---------PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM-APDSVMW 503 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~ 503 (601)
.+.+.+.|++..|..-|+..... +.+ .-..++..|.-++.+.+++.+|++...+. .. .+|....
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 46888999999999998553321 111 12345666777888999999999998876 33 3466666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH-HHHHHHHhhcC
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL-ARTRQKMKDRR 564 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~l~~~~~~~ 564 (601)
-.=..+|...|+++.|...|+++++++|+|-.+-..|..+-.+...+.+. .++|..|...-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67778888999999999999999999999988888888888777666555 77888886443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.6 Score=42.81 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCC--------CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCC
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEP--------NARTLSSVLPACARLQKLSLGKEFHGYITRNGFM 126 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 126 (601)
.|.+..|..|...-...-.++.|+..|-+...- |++. +...-.+=+. +-.|.+++|+++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 577778888877766666666666666554321 2211 0000011111 12356666666665554432
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 045105 127 SNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-----NEVSCNTIIVGYCENGNVAEARELFDQ 185 (601)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~ 185 (601)
..|..+.+.||+-.+.++++.=... -..+|+.+...+.....|++|.+.|..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345555666666666665543211 123455555555555556655555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.86 Score=41.18 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=50.3
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChhHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA---LLGGCVSHGNLEFGQ 520 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~ 520 (601)
...|++.+|..+|....... +-+...--.+.++|...|+.+.|..++..++......-+.. -+..+.+..+.....
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34445555555543322221 11123334455555555555555555555543322221211 122222222222221
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.++.-...+|+|...-..++..+...|+.++|.+.|=.+.
T Consensus 224 -~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 -DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred -HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2223333455555555666666666666666665555444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.092 Score=46.69 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=55.0
Q ss_pred hcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHHHHHHHcCC
Q 045105 480 RAGELGEAYEFIKKI----P---MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLANLFAYAGR 549 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 549 (601)
+.|++.+|...|... + ..|+.. --|...+...|+++.|...|..+.+-.|++ |..+..|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~--yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAY--YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhH--HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 555566666666554 1 122332 235666777777777777777777766653 4567777777788888
Q ss_pred HHHHHHHHHHHhhcCC
Q 045105 550 WSDLARTRQKMKDRRM 565 (601)
Q Consensus 550 ~~~A~~~l~~~~~~~~ 565 (601)
.++|..+|++..++-+
T Consensus 231 ~d~A~atl~qv~k~YP 246 (262)
T COG1729 231 TDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 8888888877776663
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.93 Score=36.87 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
......++..+...+.......+++.+... + +.+...++.++..|++.+ ..+..+.+.. ..+......+++
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~ 77 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGK 77 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHH
Confidence 334556777777778888888888887774 2 367778888888888753 3344444432 223444555667
Q ss_pred HHHhcCCcchHHHHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYI 120 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~ 120 (601)
.|.+.+-++.+.-++..+
T Consensus 78 ~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 78 LCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHcCcHHHHHHHHHhh
Confidence 776666666665555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.13 Score=48.40 Aligned_cols=127 Identities=14% Similarity=0.018 Sum_probs=86.5
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHC-----CCCc---------cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILAS-----GFRP---------DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK 469 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~-----~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 469 (601)
-...|.+.|++..|..-|++.++. +..+ -..++..+.-++.+.+.+..|++........+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 356788899999999998886542 1111 12246667778888999999998887766655 45566
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHhcCC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVS-HG-NLEFGQIAADRLIELEP 531 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~~p 531 (601)
..--=..++...|+++.|+..|+++ .+.|+......=+..|.+ .. ..+...++|..|...-+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5556677888899999999999888 567765555544444432 22 23455677777776644
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.077 Score=50.99 Aligned_cols=62 Identities=6% Similarity=-0.064 Sum_probs=42.3
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSV----MWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
...++.+..+|.+.|++++|+..|++. .+.|+.. .|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666666777777777777777664 4556532 4677777777777777777777777776
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.17 Score=40.44 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=23.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++.+.+..+++.+.-+.|+.+..-..-++++...|+|++|.++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3444444444444444444444444444444444444444444444444333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.18 Score=41.11 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHHHHHh---hhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 470 HYTCMVDLL---SRAGELGEAYEFIKKI-PMAPDSVMWGAL-LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 470 ~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
+.+.|++.+ .+.++.+++..+++.+ ...|.......+ ...+...|++.+|..+++.+.+..|..+..-..++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 444555443 3566777777777776 245554433332 22355677788888888777777776666666666666
Q ss_pred HHcCCHH
Q 045105 545 AYAGRWS 551 (601)
Q Consensus 545 ~~~g~~~ 551 (601)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 6666644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.3 Score=36.05 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 045105 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL 107 (601)
Q Consensus 62 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 107 (601)
-..++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3455666666666777777777766655 34555666666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.13 Score=45.59 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=67.1
Q ss_pred HHHhhcC--CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 150 KIFSKFS--IKNEVSCNTIIVGYCE-----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 150 ~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
..|.... ++|-.+|-+.+..+.. .++++-.-..++.|.+.|+..|..+|+.|+..+-+..-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------- 123 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------- 123 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----------
Confidence 3444444 4466666666666544 466777777888999999999999999998876543221
Q ss_pred HcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 045105 223 MRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQD 281 (601)
Q Consensus 223 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (601)
|... +-.+.-.|-+ +-+=+.+++++|...|+.||..+-..|+++|.+.+-
T Consensus 124 ------P~nv-fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 124 ------PQNV-FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------cHHH-HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1110 1111111111 112245666677777777777776677777666554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.17 Score=44.81 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 111 SLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 111 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+-+.+++++|...|+.||..+-..|++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4467778888888888888887778887777654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.3 Score=37.75 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=90.3
Q ss_pred HhcCChHHHHHHHhcCCC------CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHHhHHHHHHHHhc-----
Q 045105 378 AKCGSLKHARLAYKRIST------PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALSACVH----- 445 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~----- 445 (601)
.+.|++++|.+.|+.+.. -...+.-.++-++.+.+++++|+..+++....- -.|| ..|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 356777777777776652 122344445566677788888888888877642 2222 234434444331
Q ss_pred --cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 446 --AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 446 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
..+...+...+..+.+ ++.-|=...-..+|..-+..+.... ..-=..+..-|.+.|.+..|..-+
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~L-A~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDAL-AGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHH
Confidence 1122222222222111 1111111111122221111110000 000123455688899999999999
Q ss_pred HHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 524 DRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 524 ~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
+.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+.
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99998877654 455667778899999999988854443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.28 Score=46.00 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHH----HhCC-CCchhHHhHHHHHHHhcCChHHHHHHHhcCC---------CCChh
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAI----RCGY-DSDVHIGTALVDMYAKCGSLKHARLAYKRIS---------TPDLV 399 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~ 399 (601)
.++.+.+++.-.|+++.|.+.|+... +.|- .......-+|.+.|.-..++++|+.++.+-. .....
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455555666667777766665433 2221 1233445567777777777888877776543 13445
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
.+-+|..+|...|..++|+.+.+..++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 677788888888888888877766544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.77 Score=35.64 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=69.5
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHHhc
Q 045105 31 TACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTL---SSVLPACARL 107 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~ 107 (601)
-+++..|+.+.|++.|.+... ..|.....||.-..++.-+|+.++|++=+++..+..-.-+.... ..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 357788999999999999887 56678889999999999999999999999888775322233222 2222335566
Q ss_pred CCcchHHHHHHHHHHhc
Q 045105 108 QKLSLGKEFHGYITRNG 124 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g 124 (601)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.90 E-value=6 Score=41.64 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=90.7
Q ss_pred hcCChHHHHHHHhcCCC-----CC-----hhhHHHHHHH--HHHcCChhhHHHHHH--------HHHHCCCCccHHhHHH
Q 045105 379 KCGSLKHARLAYKRIST-----PD-----LVSQNAMLTA--YAMHGHGKEGIAHFR--------RILASGFRPDHISFLS 438 (601)
Q Consensus 379 ~~g~~~~a~~~~~~~~~-----~~-----~~~~~~ll~~--~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ 438 (601)
-.|++..|...++.+.+ |+ ...+..++.| +-..|+.+.|+..|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 36778888888876652 21 1233333333 334589999999997 4444444444444433
Q ss_pred H--HHHHhccC--chHH--HHHHHHHHHhc-CCCc--CchHHHHH-HHHhhhcC---------ChHHHHHHH-HhCCCCC
Q 045105 439 A--LSACVHAG--SIKT--GSEFFDLMAYY-DVKP--SLKHYTCM-VDLLSRAG---------ELGEAYEFI-KKIPMAP 498 (601)
Q Consensus 439 l--~~~~~~~g--~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g---------~~~~A~~~~-~~~~~~~ 498 (601)
+ +..+...+ ..++ ..++++.+... .-.| +..++..+ +.++...- .+.++++.. ++.+..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 2 11122222 2222 56666543331 1122 22233333 33332111 223334444 3333111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCc-hH-----HHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELE---PNNTG-NY-----VMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
-....-.++..-.-.|+.++..+.......+. |+... .| ..+...+...|+.++|..+..+..
T Consensus 533 l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 533 LLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 12223334444334788887777666665542 32222 22 235556788999999999876653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.2 Score=43.26 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHh
Q 045105 415 KEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKK 493 (601)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (601)
.+|.++.++.++.+ +-|......+..+..-.++++.|...|+.... +.|| ..+|........-+|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555566554 44555555555555555667777777755333 3344 23444444445556777777777766
Q ss_pred -CCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 494 -IPMAPDS---VMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 494 -~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+...|.. .+..-.+..|+.++ .+.|+.++-+-.+.
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 436 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETES 436 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcccc
Confidence 3444432 22333333444433 55566655444333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.7 Score=37.48 Aligned_cols=216 Identities=18% Similarity=0.140 Sum_probs=142.2
Q ss_pred chhhHHHHHHHHHHhCCC-CchhHHhHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHHcCChhhHHHH
Q 045105 347 TMERGKQVHAYAIRCGYD-SDVHIGTALVDMYAKCGSLKHARLAYKRIS-----TPDLVSQNAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~ 420 (601)
....+...+......... .....+......+...+.+..+...+.... ......+......+...++...+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433322 124555666777777888887777776653 33445566666677777888888888
Q ss_pred HHHHHHCCCCccHHhHHHHHH-HHhccCchHHHHHHHHHHHhcCCCc----CchHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 421 FRRILASGFRPDHISFLSALS-ACVHAGSIKTGSEFFDLMAYYDVKP----SLKHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
+.........+. ........ .+...|+++.+...+..... ..| ....+......+...++.+++...+.+.
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888887543331 22222223 67888899999999866533 222 2233334444466778888998888877
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 495 PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 495 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...++ ...+..+...+...++++.+...+..+....|.....+..+...+...|.++++...+.+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 32333 567777788888888889999999999998886566677777777777778888888877765543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.5 Score=45.49 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=33.6
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH
Q 045105 378 AKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
.+.|++++|...|-+....-.. ..++.-|....+..+-..+++.+.+.|+.- ...-..|+.+|.+.++.+...++.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHH
Confidence 3455555555544333211000 113344444444555555555555555322 222334555555555555554444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.086 Score=30.18 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.|..+...+...|++++|++.++++.+++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.4 Score=44.27 Aligned_cols=192 Identities=14% Similarity=0.077 Sum_probs=91.4
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHhcC-------CC--CChhhHHHHHHHHHHcCChhhHHHHHHHHHHC-CCCcc---HH
Q 045105 368 HIGTALVDMYAKCGSLKHARLAYKRI-------ST--PDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS-GFRPD---HI 434 (601)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~ 434 (601)
.++..+..+.++.|.++++...--.- .. .-...|..+.+++-+..++.+++.+-+.-... |..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34445555556666655554322111 11 11123444445555545555555544433321 12221 11
Q ss_pred hHHHHHHHHhccCchHHHHHHHHH-HHhcCCC----cCchHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDL-MAYYDVK----PSLKHYTCMVDLLSRAGELGEAYEFIKKI-------PMAPDSVM 502 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~ 502 (601)
...++..++...+.++++++.|+. +.-..-. ....++..|...|.+..++++|.-+..++ ++..=...
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 233345556666666666666632 2221111 12335666667777777776665554433 21111122
Q ss_pred HH-----HHHHHHHhcCChhHHHHHHHHHHhcC------CCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 503 WG-----ALLGGCVSHGNLEFGQIAADRLIELE------PNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 503 ~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|. .+.-++...|....|.+..+++.++. |-.......++++|-..|+.+.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22 23344556666666666666665541 11233444566677777776666655554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=3 Score=37.84 Aligned_cols=54 Identities=15% Similarity=-0.013 Sum_probs=32.7
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 32 ACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 32 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
.....|++.+|..+|....+ ..+-+...--.++.+|...|+.+.|..++..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 44556666666666666665 2333445555566666666666666666666644
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.3 Score=43.80 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=94.2
Q ss_pred HHHHhcCChHHHHHHHH--HhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 31 TACAANGLVLEALECLE--RMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~--~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
....-.++++++.+..+ .+.. ..+....+.++..+-+.|.++.|+++-+.-.. -.....+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~----~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP----NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG----G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhhhcc----cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcC
Confidence 34455678888777665 2221 12245577888888888888888876544322 123445567
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
+++.|.++.++ ..+...|..|.+...+.|+++-|++.|.+.. -|..++-.|.-.|+.+.-.++.+....
T Consensus 333 ~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777665432 3356678888888888888888888887766 466666677777777777777766665
Q ss_pred cCCCCCeeehHHHHHHHHhCCChhHHHHHHHH
Q 045105 189 LGVQRGIISWNSMISGYVDNSLYDEAFSMFRD 220 (601)
Q Consensus 189 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (601)
.| -++....++.-.|+.++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 255556666666777777777755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.63 E-value=3.8 Score=42.88 Aligned_cols=213 Identities=13% Similarity=0.056 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCc-------chHHHHHHHHHHhcCCCchH---
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKL-------SLGKEFHGYITRNGFMSNPF--- 130 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~--- 130 (601)
.-=.+|-.|.+.|++++|.++..+.... .......|...+..+....+- ++...-|++..+.....|+.
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 3345788899999999999999666544 456667788888888765322 23444455555443322433
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhhcCCCCchhHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCCeeeh
Q 045105 131 VVNGLVDVYRRCGDMLSAL-KIFSKFSIKNEVSCNTIIVGYCENGN-----------VAEARELFDQMEHLGVQRGIISW 198 (601)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~g~~~~~~~~ 198 (601)
+|..+ +++.-...-. .+.. +..-|-.+=-.+++... ++...+.+.+.-...+.+ ....
T Consensus 192 vY~il----g~cD~~~~~~~~V~~-----tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 192 VYKIL----GRCDLSRRHLPEVAR-----TIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HHHHH----HT--CCC-S-TTC-------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-----
T ss_pred HHHHH----hcCCccccchHHHhC-----cHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhH
Confidence 22222 2222100000 0000 11111111111222111 122222222222222223 1122
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHH
Q 045105 199 NSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGL-QSDTFVGGALVEMYC 277 (601)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 277 (601)
-.....+.-.|+++.|++.+-. ..+...+..++.+.+..+.-.+-.+... ..+..... .|...-+..||..|.
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~---~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR---NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh---hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 2345667788999999999876 1456677888888777654333222211 22221110 111245667788777
Q ss_pred h---cCCHHHHHHHhh
Q 045105 278 R---YQDLVAAQMAFD 290 (601)
Q Consensus 278 ~---~g~~~~a~~~~~ 290 (601)
+ ..++..|.+.+-
T Consensus 336 ~~F~~td~~~Al~Y~~ 351 (613)
T PF04097_consen 336 RSFEITDPREALQYLY 351 (613)
T ss_dssp HTTTTT-HHHHHHHHH
T ss_pred HHHhccCHHHHHHHHH
Confidence 6 456777777766
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=3 Score=38.43 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=70.0
Q ss_pred cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHhcCCcc
Q 045105 36 NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSS----VLPACARLQKLS 111 (601)
Q Consensus 36 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~ 111 (601)
.|++.+|-..++++.+ ..|.|..+++..=.++..+|+.......++++... ..||...|.. +.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3445555555555555 34555555555555666666666555555555432 1222211211 111223445555
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CchhHHHHHHHHHhcCCHHHHHHHHH
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-------NEVSCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
+|++.-+...+.+ +.|.....++.+.+--.|++.++.++..+-... -...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 5555555554443 334444455555555556666666555444321 01123333334445556666666654
Q ss_pred H
Q 045105 185 Q 185 (601)
Q Consensus 185 ~ 185 (601)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.13 Score=43.13 Aligned_cols=125 Identities=13% Similarity=0.060 Sum_probs=72.5
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 045105 441 SACVHAGSIKTGSEFFDLMAYYDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHG 514 (601)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 514 (601)
.-+...|++++|..-|......-.+.. ...|..-.-++.+.+.++.|++-..+. .+.|. ......-..+|-+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 446778888888888855444322211 122333344667888888888777665 44442 222223344566777
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH--HHHHHHhhcCC
Q 045105 515 NLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA--RTRQKMKDRRM 565 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~l~~~~~~~~ 565 (601)
.++.|++-|+++.+.+|....+-...+.+--....-.+.+ +.+.++++.|-
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN 235 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGN 235 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888888888876655555554433333222222 23445555553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.44 Score=43.47 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=112.9
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHH----HHHHHhhhcCChH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYT----CMVDLLSRAGELG 485 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 485 (601)
-.|++.+|...|+++++. .+.|...+.-.-.+|...|+...-...++.+.. ...++...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 468889999999999886 466777888888899999988887777766433 2345554443 3445567899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 486 EAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 486 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
+|++.-++. .++| |.....++...+-..|+..++.+...+-...=.. -..-|-+.+-.+...+.++.|++++++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999998887 4444 6667777777777788888888776654433111 245677788888889999999999986
Q ss_pred HhhcCCccCCC
Q 045105 560 MKDRRMHKSPG 570 (601)
Q Consensus 560 ~~~~~~~~~~~ 570 (601)
=.-....++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 54333334444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.086 Score=30.25 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+|..+...|...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.5 Score=42.20 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCC--cCchHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVK--PSLKHYTCMVDLLSRAGELGEAYEFIKKI----PMAP-DSVMWGALL 507 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 507 (601)
.|+.-+.. ...|++..|...|....+.... -....+-.|.+++...|++++|..+|..+ +..| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544443 3455577777777554443211 11223445777777777777777777655 2222 234455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
....+.|+.+.|...|+++.+..|+.+.+-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 666777888888888888888888655443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.38 E-value=7.2 Score=40.23 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=83.3
Q ss_pred hhcCChHHHHHHHHHHH--------HcCCCCCHhhHHH-----HHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHH
Q 045105 70 TQNGYDEEAIGMLFRMQ--------AEGLEPNARTLSS-----VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLV 136 (601)
Q Consensus 70 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 136 (601)
.+.-++++-..+.+.++ .-|++.+..-|.. ++.-+...+.+..|.++-..+...-..- ..+|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34445555444443332 2366666555543 4555566677777777776664322122 45666666
Q ss_pred HHHHhcC---CHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCeeehHHHHHHHHh
Q 045105 137 DVYRRCG---DMLSALKIFSKFSI--KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ----RGIISWNSMISGYVD 207 (601)
Q Consensus 137 ~~~~~~~---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~ 207 (601)
.-+.+.. +-+-+..+-+++.. ....+|..+.......|+.+-|..+++.=...+-. .+..-+..-+.-+.+
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaie 558 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIE 558 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHh
Confidence 6666542 23333333344444 35566777777777888888887776653222110 123334445555566
Q ss_pred CCChhHHHHHHHHHHH
Q 045105 208 NSLYDEAFSMFRDLLM 223 (601)
Q Consensus 208 ~~~~~~a~~~~~~~~~ 223 (601)
.|+.+-...++..+..
T Consensus 559 s~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 559 SGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCchhHHHHHHHHHH
Confidence 6666666666655543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.22 Score=45.11 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
+..++..+...|+.+.+.+.++++.+.+|-+...|..+..+|.+.|+...|...++++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.05 E-value=3.1 Score=41.85 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCC-CCccH-----HhHHHHHHHHhc----cCchHHHHHHHHHHHhcCCCcCchHH
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASG-FRPDH-----ISFLSALSACVH----AGSIKTGSEFFDLMAYYDVKPSLKHY 471 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 471 (601)
..++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.+++..+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 334444445566666666666554422 11100 123333333332 34556677777655443 3444433
Q ss_pred HH-HHHHhhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHH-HHHH
Q 045105 472 TC-MVDLLSRAGELGEAYEFIKKIPM------APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM-LANL 543 (601)
Q Consensus 472 ~~-l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 543 (601)
.. -.+.+...|+.++|++.|++.-. ......+--+...+...+++++|.+.+.++.+.+.-....|.. .+.+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 32 23445667788888888876521 1233445556666777788888888888888876533344443 3345
Q ss_pred HHHcCCH-------HHHHHHHHHHh
Q 045105 544 FAYAGRW-------SDLARTRQKMK 561 (601)
Q Consensus 544 ~~~~g~~-------~~A~~~l~~~~ 561 (601)
+...|+. ++|.+++++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 5667777 77777777663
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.5 Score=36.03 Aligned_cols=85 Identities=7% Similarity=0.023 Sum_probs=46.7
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
+...|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|...|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 445667777777776665532 12222334444555556677777777644333321 2233333455666677777777
Q ss_pred HHHHHhC
Q 045105 488 YEFIKKI 494 (601)
Q Consensus 488 ~~~~~~~ 494 (601)
..-|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 7666655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.5 Score=33.13 Aligned_cols=115 Identities=6% Similarity=0.012 Sum_probs=49.0
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-C--------------------ChhhHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-P--------------------DLVSQNA 403 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~--------------------~~~~~~~ 403 (601)
.|.+++..++..+...+. +..-+|.+|.-....-+-+-....++.+.+ . +......
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 467777777777766543 334445554444433444444444444331 1 1112233
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD 463 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (601)
.+..+..+|+-++-..++.++.+.+ +|++.....+..||.+.|+..++.+++...-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444455444444444444322 4444444444555555555555555554444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.6 Score=40.77 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 498 PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
....+|..+...+++.|.++.|...+.++.+..+. .+.+...-+..+...|+..+|...+++..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999986532 567788889999999999999999998877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.66 E-value=4.1 Score=40.48 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=59.0
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHH
Q 045105 375 DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (601)
+...++|+++.|.++.+... +...|..|......+|+++-|.+.|++... +..|+--|...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34455677777766665554 445677777777777777777777666543 3344444555666655555
Q ss_pred HHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC
Q 045105 455 FFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495 (601)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (601)
+.+.....| -++.-..++.-.|+.++..+++.+.+
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 554444433 23444455555677777777766655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.57 Score=42.53 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=54.4
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCCHhhHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA-----EGLEPNARTLSS 99 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 99 (601)
++..++..+...|+.+.+.+.++.+.. ..+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455566667777777777777777777 5667777788888888888888888777777655 366666665555
Q ss_pred HHHH
Q 045105 100 VLPA 103 (601)
Q Consensus 100 ll~~ 103 (601)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.56 E-value=14 Score=40.57 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=35.7
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcC--chHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPS--LKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 517 (601)
+.+|...|+|.+|+.+...+.. .-+ ..+-..|+.-+...++.-+|-+++.+....|... +..+++...++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHH
Confidence 4455555555555555433211 111 1112344455555666666666655554233322 22344444555
Q ss_pred HHHHHHHHH
Q 045105 518 FGQIAADRL 526 (601)
Q Consensus 518 ~a~~~~~~~ 526 (601)
+|.++....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.8 Score=34.08 Aligned_cols=30 Identities=3% Similarity=0.063 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCc
Q 045105 81 MLFRMQAEGLEPNARTLSSVLPACARLQKL 110 (601)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (601)
.++.+.+.+++|+...+..+++.+.+.|.+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 334444445555555555555555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.17 Score=29.52 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 536 NYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
++..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.35 E-value=6.7 Score=36.39 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHhh
Q 045105 276 YCRYQDLVAAQMAFD 290 (601)
Q Consensus 276 ~~~~g~~~~a~~~~~ 290 (601)
..+.++++.|.++|+
T Consensus 256 ~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHhhcCHHHHHHHHH
Confidence 344566666666554
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.29 E-value=3.2 Score=41.82 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=114.4
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHHh----cCCcc
Q 045105 42 ALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNA-----RTLSSVLPACAR----LQKLS 111 (601)
Q Consensus 42 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~ 111 (601)
...+|.-+.. ..||. ...++...+-.||-+.+++++.+-.+.+ +.-.. -+|+.++..++. ..+.+
T Consensus 176 G~G~f~L~lS--lLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLS--LLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHH--hCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 4556666666 44444 4567777788899999988888766542 22111 234444444443 34567
Q ss_pred hHHHHHHHHHHhcCCCchHHHHH-HHHHHHhcCCHHHHHHHHhhcCCC-------CchhHHHHHHHHHhcCCHHHHHHHH
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNG-LVDVYRRCGDMLSALKIFSKFSIK-------NEVSCNTIIVGYCENGNVAEARELF 183 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~ 183 (601)
.+.++++.+.+. -|+...|.. -.+.+...|++++|++.|++.... ....+--+...+.-.++|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 788888888875 466555543 345666789999999999975531 2334556677788899999999999
Q ss_pred HHHHhcCCCCCeeehHHHH-HHHHhCCCh-------hHHHHHHHHHHH
Q 045105 184 DQMEHLGVQRGIISWNSMI-SGYVDNSLY-------DEAFSMFRDLLM 223 (601)
Q Consensus 184 ~~m~~~g~~~~~~~~~~li-~~~~~~~~~-------~~a~~~~~~~~~ 223 (601)
..+.+.. .-+...|.-+. .++...++. ++|.++|.+...
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9998753 23333444333 344556766 889999988754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.3 Score=43.12 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHh-cCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCC--CCC--HHHHHHHHHHHH
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPM--APD--SVMWGALLGGCV 511 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~ 511 (601)
..+..++.+.|+.++|.+.++++.+ ........+...|++++...+.+.++..++.+... -|. ..+|++.+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3445555566777777777744433 22222233555667777777777777777666531 132 234444443333
Q ss_pred hcCC---------------hhHHHHHHHHHHhcCCC
Q 045105 512 SHGN---------------LEFGQIAADRLIELEPN 532 (601)
Q Consensus 512 ~~g~---------------~~~a~~~~~~~~~~~p~ 532 (601)
..|| -..|.+++.++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3333 12356778888887764
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.9 Score=40.11 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCC---c--cHHhHHHHHHHHhccCchHHHHHHHHH----HHhcCCCcCchHH
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFR---P--DHISFLSALSACVHAGSIKTGSEFFDL----MAYYDVKPSLKHY 471 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~ 471 (601)
..++..++...+.++++++.|+...+---. | .-..+..|-..|.+..++++|.-+... ....++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344566677778899999999887652211 1 123677888888899999988766522 2233322211222
Q ss_pred H-----HHHHHhhhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 472 T-----CMVDLLSRAGELGEAYEFIKKI-------PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 472 ~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
. .+.-+|-..|+..+|.+..++. |..+ .......+...|...||.|.|..-|+.+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2 2344566778888887777665 3222 3456677788899999999999988887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.27 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=14.6
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSS 51 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~ 51 (601)
+..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.98 E-value=5.9 Score=34.86 Aligned_cols=206 Identities=12% Similarity=0.038 Sum_probs=88.5
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
.|..-..+|....++++|...+.+..+ +..-|...|+. ...++.|.-+.++|.+. .--...|+-....|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 455555666667777777776666554 22222222221 12233344444444331 11122344444555
Q ss_pred HhcCCcchHHHHHHHHHHh--cCCCch--HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRN--GFMSNP--FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (601)
...|.++.|-..++..-+. ++.|+. ..|..-+...-..++...|.++ +..+-+.+++...+++|-
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------YGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------HHHhhhHhhhhHHhhHHH
Confidence 5556665555555444321 122221 1222222222222222222222 333445566666666554
Q ss_pred HHHHHHHhc----CCCCCe-eehHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCChhhHHHHHHHhcccCCHHHHHHH
Q 045105 181 ELFDQMEHL----GVQRGI-ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGI--EPTSFTFGSVLIACADMNSLRKGKEI 253 (601)
Q Consensus 181 ~~~~~m~~~----g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~ 253 (601)
..+..-... .-.++. ..|...|-.+.-..++..|..++++-.+..+. .-+..+...||.+| ..|+.+.+.++
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 444332211 001111 22444555566666777777777664331111 11334455555544 34455554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.5 Score=34.08 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=55.5
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchH-HHHHH--HHHHHhcCCH
Q 045105 70 TQNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPF-VVNGL--VDVYRRCGDM 145 (601)
Q Consensus 70 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l--~~~~~~~~~~ 145 (601)
.+.+..++|+.-|..+.+.|..--.. ..-.........|+...|...|++.-+....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34445555555555555543221100 00011112334455555555565555443333222 11111 1123345666
Q ss_pred HHHHHHHhhcCCC-C---chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 146 LSALKIFSKFSIK-N---EVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 146 ~~a~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
+......+-+..+ + ...-.+|.-+-.+.|++.+|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666655555422 1 11234555566677777777777777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=4.9 Score=33.25 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=66.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCeeehHHH-----HHHHHhCCChhHHHHHHHHHHHcCCCCCChh-hHHHHHH--Hhc
Q 045105 171 CENGNVAEARELFDQMEHLGVQRGIISWNSM-----ISGYVDNSLYDEAFSMFRDLLMRDGIEPTSF-TFGSVLI--ACA 242 (601)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~--~~~ 242 (601)
.+.+..++|+.-|.++.+.|.. .|-.| .......|+-..|...|.++-. ..-.|... -...+=. .+.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcchhhHHHHHHHHHHHh
Confidence 4556667777777777655422 22222 1234566777777777777655 22333322 1112211 244
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 243 DMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
..|.++....-.+.+-..+-+.....-.+|--+-.+.|++.+|.+.|.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 567777766666665555545555555667777778888888888888
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.75 E-value=6.5 Score=34.62 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCC--hhhHHHHHHHHHHc
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD--LVSQNAMLTAYAMH 411 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~ll~~~~~~ 411 (601)
.|.....+|....++++|..-+.+..+. ...+...|. ....++.|..+.+++.+.+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555666777788888887766655531 111111111 1223445555555555322 23456666777788
Q ss_pred CChhhHHHHHHHHHH--CCCCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 412 GHGKEGIAHFRRILA--SGFRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~--~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
|.++.|-..+++.-+ ..+.|+.. .|..-+......++...|.. .+....+.|.+..++.+|
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHhhHH
Confidence 877776666655432 12455432 23333333333333333333 344455677777888887
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 488 YEFIKKIP-------MAPDS-VMWGALLGGCVSHGNLEFGQIAADRLIEL----EPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 488 ~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
-..+.+-+ .-++. ..+.+.+-.+....|+..|+..++.-.+. .|.+..+...|+.+| ..|+.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 66665542 11222 23444555566667888898888876664 455777777887764 6788888887
Q ss_pred HHH
Q 045105 556 TRQ 558 (601)
Q Consensus 556 ~l~ 558 (601)
++.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.53 E-value=4.5 Score=32.48 Aligned_cols=79 Identities=14% Similarity=0.008 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETP-NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL 107 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 107 (601)
-.....+.|++++|++.|+.+.......+ ...+.-.|+.+|.+++++++|...+++.++....-...-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 44455667888888888888887432211 23455667888888888888888888887763322234566666665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.49 E-value=5 Score=39.39 Aligned_cols=63 Identities=17% Similarity=0.039 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 500 SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN--NTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
..+-..+...+.+.|+.++|++.++.+.+..|. +..+...|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344445666666777777788887777776664 345777777777888888888777776543
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.41 E-value=7.5 Score=34.51 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=141.4
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHh-CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHH-
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRC-GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PDL-VSQNAMLT- 406 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~- 406 (601)
...+......+...+....+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 445566667777788888888887776653 3344555666677777788888899998887764 222 22333333
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCc----cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRP----DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG 482 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 482 (601)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..............+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78899999999999999966 343 233444445556778899999999966555432214567788888899999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 483 ELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999998877 33454 445555555555777899999999999999885
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.40 E-value=5.7 Score=33.09 Aligned_cols=134 Identities=11% Similarity=0.093 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCC
Q 045105 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG--NVAEARELFDQMEHLGVQ 192 (601)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~ 192 (601)
+.+..+.+.+++|+...+..+++.+.+.|.+.....++.--.-+|.......+-.+.... -.+-|++.+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-----
Confidence 445566678899999999999999999999999998888776666665554443333221 1233444444443
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALG 261 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (601)
..+..+++.+...|++-+|+.+.++... .+......++.+..+.++...-..+++.....+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1356678889999999999999977422 122333556666666666666666665555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.40 E-value=15 Score=38.02 Aligned_cols=137 Identities=7% Similarity=-0.074 Sum_probs=82.3
Q ss_pred HhcCCCchHHHH-----HHHHHHHhcCCHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCH--HHHHHHHHHHHhcCC
Q 045105 122 RNGFMSNPFVVN-----GLVDVYRRCGDMLSALKIFSKFSIKN---EVSCNTIIVGYCENGNV--AEARELFDQMEHLGV 191 (601)
Q Consensus 122 ~~g~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~ 191 (601)
.-|++.+..-|. .++.-+...+.+..|.++-+.+..|. ...|......+++..+. +++.+..++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 456666665554 45666777888999999988888775 44555555666655332 233333333222222
Q ss_pred CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CChhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 192 QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIE---PTSFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 192 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
-+..+|..+.+.....|+.+-|..+++.-....... .+..-+...+.-+...|+.+....++-.+..
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 455678888888888999999988886422211111 1223345555566666777766666655543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.29 E-value=9.7 Score=35.52 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHh--cC----ChHHHHHHHhcCCC-------CChhhHHHHHHHHHHcCC-
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAK--CG----SLKHARLAYKRIST-------PDLVSQNAMLTAYAMHGH- 413 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~- 413 (601)
++....+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++ ++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777788888887777666543333222 11 24567778887773 444455555443 2222
Q ss_pred ---hhhHHHHHHHHHHCCCCccHH--hHHHHHHHHhccCc--hHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 414 ---GKEGIAHFRRILASGFRPDHI--SFLSALSACVHAGS--IKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 414 ---~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
.+.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 456778888888888776543 33333333322222 44778888888999999988887765433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.22 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHH
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888899998888875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.02 Score=46.94 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 417 (601)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666777777888888888888766666677777888888877766776666663322 2222334444444444444
Q ss_pred HHHHHH
Q 045105 418 IAHFRR 423 (601)
Q Consensus 418 ~~~~~~ 423 (601)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.27 Score=28.02 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..+..++.++...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.89 E-value=34 Score=40.89 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 500 SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..+|-...+..+..|.++.|...+-.+.+.. -+.++...+..++..|+...|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4578888888999999999999998888876 578899999999999999999999998875543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=19 Score=37.97 Aligned_cols=116 Identities=9% Similarity=0.058 Sum_probs=62.4
Q ss_pred cCChhhHHHHHHHHHHCC-CCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 411 HGHGKEGIAHFRRILASG-FRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
..+.+.|...+....... +.+... ....+.......+..+++...+...... ..+......-++...+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 345678888888764443 333322 3333333333332245565555432221 22444455555566678888888
Q ss_pred HHHHHhCCCC-CCHHHH-HHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 488 YEFIKKIPMA-PDSVMW-GALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 488 ~~~~~~~~~~-~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
...+..|+.. -+..-| -=+..++...|+.++|...|+++..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888887411 111112 2244455557888888888888743
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.76 E-value=5.8 Score=32.60 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=54.4
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCc
Q 045105 31 TACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKL 110 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (601)
..-.+.++.+++..+++-++-.....|...++... .+...|+|.+|+.+|+++.+. .|....-..|+..|....+-
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCC
Confidence 34456789999999999988753334444444433 456789999999999998765 23333334444444333222
Q ss_pred chHHHHHHHHHHhcCCCc
Q 045105 111 SLGKEFHGYITRNGFMSN 128 (601)
Q Consensus 111 ~~a~~~~~~~~~~g~~~~ 128 (601)
..=...-+++.+.+..|+
T Consensus 94 ~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPD 111 (160)
T ss_pred hHHHHHHHHHHhcCCChH
Confidence 222223334555543443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.33 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+|..+...|...|++++|.+.+++..+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555566666666666666666666665
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.34 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+|..|...|.+.|++++|+++++++..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788888888888888888885543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=9.5 Score=32.96 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHH--HHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL--SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMV 475 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 475 (601)
+..||-+.--+...|+++.|.+.|+...+. .|.- .|..+= -++--.|++..|.+-+...-+.. |+.. |.+|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D--~~DP-fR~L- 171 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDD--PNDP-FRSL- 171 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcC--CCCh-HHHH-
Confidence 356777777777888888888888888774 3321 122222 22334677777777663322221 2211 2222
Q ss_pred HHhh--hcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------CCchHHHHHHHHH
Q 045105 476 DLLS--RAGELGEAYEFI-KKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN-------NTGNYVMLANLFA 545 (601)
Q Consensus 476 ~~~~--~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~ 545 (601)
..|. ..-++.+|..-+ ++.. ..|..-|...+-.+.- |+. ..+.+++++.+-..+ -.++|..|+.-+.
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2222 334566665443 4442 3444445544444332 111 112333333333222 2457788888888
Q ss_pred HcCCHHHHHHHHHHHhhc
Q 045105 546 YAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~ 563 (601)
..|+.++|..+++-....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 888888888888765443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.39 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.+|..++.+|...|++++|...+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999877653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.38 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 537 YVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+..++.++.+.|++++|.+.++++.+.-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4556666666666666666666665544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.4 Score=31.00 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=50.1
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-CCCCchhHHhHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC-GYDSDVHIGTALV 374 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 374 (601)
.|+...|..-.-+..+....+.|++......+++|.+.+++..|.++++-++.. |. +..+|..++
T Consensus 18 ~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 18 RPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 677777877777777778888999999999999999999999999999877633 32 334555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.59 E-value=3.4 Score=35.10 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhcCCC---cCchHHHHH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYYDVK---PSLKHYTCM 474 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l 474 (601)
.+..+..-|++.|+.+.|++.|.++.+....|... .+..+|+.....+++..+..........--. ++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666777777777777777777665555443 4556666667777777766666443332111 111111111
Q ss_pred HHH--hhhcCChHHHHHHHHhC
Q 045105 475 VDL--LSRAGELGEAYEFIKKI 494 (601)
Q Consensus 475 ~~~--~~~~g~~~~A~~~~~~~ 494 (601)
..+ +...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 122 23467777777777655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.48 Score=38.74 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHH
Q 045105 100 VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 179 (601)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666666666666655555566666777777776666666666663221 2234455555555555555
Q ss_pred HHHHHHH
Q 045105 180 RELFDQM 186 (601)
Q Consensus 180 ~~~~~~m 186 (601)
.-++..+
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.57 E-value=25 Score=35.52 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=23.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
.++.+.|..++.++.+..|++...|..+.......+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 456667777777777777766666666666655544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.51 E-value=18 Score=33.63 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCchh---hHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC
Q 045105 334 TVGIILSACSSLATME---RGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS 394 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (601)
++..++.++...+..+ +|..+++.+..... -.+.++..-+..+.+.++.+.+.+.+.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4555666666655443 34445544533321 123333334444444555555555555554
|
It is also involved in sporulation []. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.34 E-value=3.7 Score=30.47 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=45.5
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...|..-.-+..+....+.|++......+++|.+.+++..|.++++-++..-- +...+|..+++
T Consensus 21 ~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 21 RPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp -TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred CccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 57777777777777777888899999999999999999999999999988775422 22336665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.31 E-value=22 Score=34.37 Aligned_cols=150 Identities=8% Similarity=-0.095 Sum_probs=79.4
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc---cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC--chH
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP---DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS--LKH 470 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 470 (601)
....+|..+...+.+.|+++.|...+.++...+..+ .+.....-...+-..|+..+|...++......+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 444567777888888888888888888887643211 222333334555667888888888855544222222 111
Q ss_pred HHHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEF-IKKIPMAPDSVMWGALLGGCVSH------GNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
...+...+.. ..+..... ........-..++..+...+... ++.+.+...+..+.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000112222222233333 778889999999999999888888888877
Q ss_pred HHHc
Q 045105 544 FAYA 547 (601)
Q Consensus 544 ~~~~ 547 (601)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.31 E-value=39 Score=37.34 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=67.5
Q ss_pred CchhHHhHHH----HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHH
Q 045105 365 SDVHIGTALV----DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLS 438 (601)
Q Consensus 365 ~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ 438 (601)
|+...+..+. ..+...+.+++|.-.|+...+. .-.+.+|...|+|.+|+.+..++.. .-+.. +-..
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 4444444333 3334456666666666554421 2235667777777777777666543 11222 2245
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (601)
|..-+...+++-+|-++...... .| .-.+..|+++..|++|+.+.....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 66777788888888888754322 12 334556778888888888877654
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.70 E-value=23 Score=38.17 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=58.4
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcC--CCCCChhhHHHHHHHHhhcCCh--HHHHHHHHHHHHcCCCCCHhhHHH-
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLD--NETPNLVSWSAVIGGFTQNGYD--EEAIGMLFRMQAEGLEPNARTLSS- 99 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~- 99 (601)
-|..|+..|...|++++|+++|....... ...--...+..++..+.+.+.. +-.++.-.........-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46677778888888888888888776521 1111122333445554444444 444444444333211100011111
Q ss_pred -----------HHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 100 -----------VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 100 -----------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
.+-.+......+-+...++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111233344555566666666655555556666666666654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.88 Score=27.34 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.++..++.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 36788999999999999999999887643
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.97 Score=41.47 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=64.9
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCc-CchHHHHHHHHhhhcCChHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPD---SVMWGALLGGCVSHGN 515 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 515 (601)
.+-|.+.|.+++|+..|..-. .+.| ++.++..-..+|.+..++..|+.-...+- ..| ...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHhh
Confidence 367889999999999995422 2344 67777777788999988887776665542 222 2234444444445688
Q ss_pred hhHHHHHHHHHHhcCCCCCc
Q 045105 516 LEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~ 535 (601)
..+|.+-++..+++.|++-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88999999999999996433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.33 E-value=3 Score=30.57 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 494 IPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
+.+-|++.+..+.+.+|++.+|+..|.++++-......++...|-.++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 356789999999999999999999999999988866554444555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.26 E-value=7.8 Score=32.96 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=58.1
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHH-----hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHI-----SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLL 478 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 478 (601)
..-+...|++++|..-|.+.++.. ++... .|..-..++.+.+.++.|+.-.....+.+ |+ ......-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 344677888888888888888863 33222 34444456677888888887775444433 32 11222223467
Q ss_pred hhcCChHHHHHHHHhC-CCCCCHH
Q 045105 479 SRAGELGEAYEFIKKI-PMAPDSV 501 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~~~~ 501 (601)
.+..++++|++-++++ ...|...
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchH
Confidence 7778888888888777 3445443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.23 E-value=1 Score=27.68 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|+.+|...|+.+.|++++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 568899999999999999999988655
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.14 E-value=3.4 Score=30.67 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=36.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 493 KIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+.....+....|..++.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 33467999999999999999999999999999998886655446665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=2.7 Score=38.42 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..+.+-.+|.+.++++.|.++.+.+..+.|+++.-+..-+-+|.+.|.+..|..-++...+.-+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3455667788889999999999999999998888888888889999999999888887765543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.2 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999886543
|
... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.56 E-value=23 Score=32.47 Aligned_cols=134 Identities=9% Similarity=0.098 Sum_probs=84.0
Q ss_pred CCHHHHHHHHhhcC-----CCCchhHHHHHHHHHhc-C-CHHHHHHHHHHHHh-cCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 143 GDMLSALKIFSKFS-----IKNEVSCNTIIVGYCEN-G-NVAEARELFDQMEH-LGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 143 ~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
..+.+|+.+|+... -.|..+...+++..... + ....--++.+-+.. .|-.++..+-..++..+++.++|..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34566777776322 23555566666665552 2 22223344444432 23467777788888888999999988
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHH-----HHHcCCCCchhHHHHHHHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL-----AIALGLQSDTFVGGALVEMY 276 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~ 276 (601)
++++.......+..-|...|...|+.....|+..-..++..+ +.+.++..+......+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888887665335556777888888888888888777776654 33455555555555544443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.55 E-value=6.3 Score=33.50 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=41.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 045105 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA--RTLSSVLPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 60 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (601)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|+.....+++..+....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666777777777777777777777765433332 3455666666667777776666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=24 Score=32.69 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=143.3
Q ss_pred HHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCCh----HHHHHHHHHHHHcC
Q 045105 14 VFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYD----EEAIGMLFRMQAEG 89 (601)
Q Consensus 14 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~ 89 (601)
+++.+.++|.......+.++...|. +++...+..+.+ .+|...-...+.++++.|+. .++...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 3344445677777777777777765 344444444433 24566666677777777764 4577777776443
Q ss_pred CCCCHhhHHHHHHHHHhcCCcc--hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHH
Q 045105 90 LEPNARTLSSVLPACARLQKLS--LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTII 167 (601)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 167 (601)
.|+...-...+.++...+... ...++.+.+...-..++..+-...+.++++.++.+....+..-+..+|...-...+
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~ 180 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 566666666666665543221 12233333433333456667777788888888765555555555666777777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCC
Q 045105 168 VGYCENG-NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNS 246 (601)
Q Consensus 168 ~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 246 (601)
.++.+.+ +...+...+..+.. .++..+-...+.++.+.++ ..++..+-+..+ .+ + .....+.++...|+
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~-~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELK-KG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHc-CC---c--hHHHHHHHHHhcCC
Confidence 7777653 24456666666653 4566667777888888887 456666666555 22 2 23456677777777
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045105 247 LRKGKEIHALAIALGLQSDTFVGGALVEM 275 (601)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 275 (601)
. .+...+..+.+.. +|..+....+.+
T Consensus 251 ~-~a~p~L~~l~~~~--~d~~v~~~a~~a 276 (280)
T PRK09687 251 K-TLLPVLDTLLYKF--DDNEIITKAIDK 276 (280)
T ss_pred H-hHHHHHHHHHhhC--CChhHHHHHHHH
Confidence 5 4666666665432 254444444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.38 E-value=18 Score=31.30 Aligned_cols=30 Identities=13% Similarity=-0.098 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 59 LVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 59 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
...||.|.-.+...|+++.|.+.|+...+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 455666666666677777777777766654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.27 E-value=3.8 Score=35.07 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=52.9
Q ss_pred hhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHH
Q 045105 479 SRAGELGEAYEFIKKIPMAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 552 (601)
.+.|+ ++|.+.|-++.-.| +.+.....+..|....|.+++++++-++.++.+. |+.++..|+.++.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 56777776663233 3344444444555567899999999999987433 68899999999999999998
Q ss_pred HH
Q 045105 553 LA 554 (601)
Q Consensus 553 A~ 554 (601)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.15 E-value=1.1 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=23.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.+...+.+.|++++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677889999999999999998885
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=87.03 E-value=2.2 Score=31.33 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..+++..+.+|+|......++..+...|++++|.+.+-++..+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34445555556555566666666666666666666555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.88 E-value=0.62 Score=26.71 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCCChhhHHHHHHHHhhcCChHHHH
Q 045105 54 NETPNLVSWSAVIGGFTQNGYDEEAI 79 (601)
Q Consensus 54 ~~~~~~~~~~~li~~~~~~~~~~~a~ 79 (601)
..|-|..+|+.+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34556667777777777777776664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.26 E-value=29 Score=32.44 Aligned_cols=88 Identities=9% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh--CCC----hhHHHHHHHHHHHcCCCC--CChhhHHHHHHHhcccCC-
Q 045105 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVD--NSL----YDEAFSMFRDLLMRDGIE--PTSFTFGSVLIACADMNS- 246 (601)
Q Consensus 176 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~- 246 (601)
+++...+++.|.+.|+.-+..+|-+....... ..+ ..++..+|+.|.+.+..- ++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788999999998888776653333222 222 557889999998865543 445556666544 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCc
Q 045105 247 ---LRKGKEIHALAIALGLQSD 265 (601)
Q Consensus 247 ---~~~a~~~~~~~~~~~~~~~ 265 (601)
.+.++.+|+.+.+.|+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 3456667777777676544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.87 E-value=17 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=41.1
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG 89 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 89 (601)
-...++++++..+++.|+-.....+...++... .+...|+|.+|..+|+++.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 344789999999999988754444455555544 4567899999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.86 E-value=6.6 Score=35.95 Aligned_cols=97 Identities=14% Similarity=0.241 Sum_probs=66.6
Q ss_pred hCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCC--------hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc
Q 045105 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPD--------LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP 431 (601)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (601)
.|.+.+..+...++..-....+++++...+-++. +|+ ..+|-.++ -.=++++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 3555555566666666666777888877776665 222 22222222 2335678888888888889999
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHH-HHHHh
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFF-DLMAY 461 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~ 461 (601)
|.++++.+|+.+.+.+++..|.++. ..|.+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888877 44333
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.50 E-value=3.4 Score=36.17 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=51.2
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 480 RAGELGEAYEFIKKI-PMAPDSVMW-GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
...++..|+.-+.+. .+.|...+| ..=+..+.+..+++.+.+-..++.++.|+.....+.++..+.....+++|...|
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 334455555544433 445655433 223334455667777777777777777776677777777777777777777777
Q ss_pred HHHh
Q 045105 558 QKMK 561 (601)
Q Consensus 558 ~~~~ 561 (601)
.+..
T Consensus 102 qra~ 105 (284)
T KOG4642|consen 102 QRAY 105 (284)
T ss_pred HHHH
Confidence 7663
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.44 E-value=8 Score=35.43 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDN--ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
-..++..-....+++.++..+-.++.... ..|+... ...++.+.+ -++++++.++..-.+.|+-||..++..+|..
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~ 144 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDS 144 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHH
Confidence 33334444445556666666655544210 0111111 122222222 2455666666666666666666666666666
Q ss_pred HHhcCCcchHHHHHHHHHHh
Q 045105 104 CARLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~ 123 (601)
+.+.+++..|.++.-+|...
T Consensus 145 flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 145 FLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHhcccHHHHHHHHHHHHHH
Confidence 66666666666665555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.42 E-value=27 Score=31.31 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC
Q 045105 166 IIVGYCENGNVAEARELFDQMEHLGV--QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT 230 (601)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 230 (601)
-+..-.+.|++++|.+.|+.+....+ +-...+--.++.++.+.++++.|+..+++.....+-.||
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 34445566667777777666664421 112223334455566666666666666666654444444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.06 E-value=6.9 Score=33.80 Aligned_cols=77 Identities=8% Similarity=0.005 Sum_probs=53.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE--GLEPNARTLSSVLP 102 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~ 102 (601)
+.+..++.+.+.++..+++...+.-.+ ..|-|...-..+++.|+-.|+|++|..-++-.-+. ...+-..+|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345566778888888888888877665 45567777788888888888888887766665443 22344456666665
Q ss_pred H
Q 045105 103 A 103 (601)
Q Consensus 103 ~ 103 (601)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.84 E-value=24 Score=30.16 Aligned_cols=87 Identities=9% Similarity=0.081 Sum_probs=39.3
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCcCchHHHH-----HHHHhhhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 045105 441 SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC-----MVDLLSRAGELGEAYEFIKKIPMAPD--SVMWGALLGGCVSH 513 (601)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~ 513 (601)
..+...+++++|..-++..... |....+.. |.+.....|.+++|+..++... .++ ......-...+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHc
Confidence 3445555666665555433221 11112222 2333445555566655555543 221 12222223345555
Q ss_pred CChhHHHHHHHHHHhcCC
Q 045105 514 GNLEFGQIAADRLIELEP 531 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p 531 (601)
||.++|...|+++.+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 555555555555555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.53 E-value=2.3 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
.+++.+...|...|++++|..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666777777777777777777777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.45 E-value=26 Score=35.49 Aligned_cols=44 Identities=20% Similarity=0.130 Sum_probs=21.2
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+.|+++.|.++..+. .+..-|..|.++....|++..|.+-|.+.
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 345555555544221 12334555555555555555555555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.43 E-value=2.4 Score=27.31 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
.+.-++.+.|+++.|.+..+.+.+++|+|..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3556788999999999999999999997765443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.23 E-value=59 Score=34.23 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCC---ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETP---NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACAR 106 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (601)
+.-+.+.+.+++|+...+.... ..| ....+...|..+.-.|++++|-...-.|... +..-|......+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 4567778889999988877554 223 3456778888888889998888888777643 44455555555555
Q ss_pred cCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 107 LQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 107 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
.++... +...+.......++.+|..++..+..
T Consensus 436 ~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 444332 22222222223345566666665555
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.21 E-value=29 Score=30.61 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=13.5
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 045105 514 GNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~ 532 (601)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 5666677777777777775
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.62 E-value=68 Score=34.44 Aligned_cols=216 Identities=14% Similarity=0.015 Sum_probs=117.0
Q ss_pred HhcCCCchhhHHHHHHHHHHhCCCCchh-------HHhHHHH-HHHhcCChHHHHHHHhcCC--------CCChhhHHHH
Q 045105 341 ACSSLATMERGKQVHAYAIRCGYDSDVH-------IGTALVD-MYAKCGSLKHARLAYKRIS--------TPDLVSQNAM 404 (601)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l 404 (601)
......++.+|..+..++...-..|+.. .++.+-. .....|++++|.++-+... .+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456678888888888877653333221 2222221 2234688888877776543 2555677778
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHH---hHHHHH--HHHhccCch--HHHHHHHHHHHhcCC--C----cCchHH
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHI---SFLSAL--SACVHAGSI--KTGSEFFDLMAYYDV--K----PSLKHY 471 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~--~~~~~~g~~--~~a~~~~~~~~~~~~--~----~~~~~~ 471 (601)
..+..-.|++++|..+.++..+.--.-+.. .+..+. ..+...|+. .+....+........ . +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999999888766542222332 222222 234566633 333333432222111 1 112344
Q ss_pred HHHHHHhhhcCChHHHHHH----HHhCC-CCCCHH--HH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CchHH---
Q 045105 472 TCMVDLLSRAGELGEAYEF----IKKIP-MAPDSV--MW--GALLGGCVSHGNLEFGQIAADRLIELEPNN-TGNYV--- 538 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~----~~~~~-~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~--- 538 (601)
..+..++.+ .+.+..- +.-.. ..|... .. ..|+......||.++|...+..+..+--+. +..+.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 455555554 3333222 21111 123222 22 245666778899999999998888763221 22222
Q ss_pred -HHH--HHHHHcCCHHHHHHHHHH
Q 045105 539 -MLA--NLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 539 -~l~--~~~~~~g~~~~A~~~l~~ 559 (601)
..+ ......|+...|...+.+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 222 233467999888887665
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.78 E-value=4.1 Score=35.12 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANL 543 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~ 543 (601)
|.+.-+..+.+.+.+.+|+...+.- ..+| |..+-..++..++-.|++++|..-++.+-++.|++. ..|.+++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455677888899999999887654 4566 666777888999999999999999999999999754 355555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.2 Score=39.33 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=74.2
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH
Q 045105 476 DLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (601)
+.|.+.|.+++|+..+.+. ...| |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5688999999999999765 5667 8888888899999999999999999999999765666777777777788888888
Q ss_pred HHHHHHHhhcC
Q 045105 554 ARTRQKMKDRR 564 (601)
Q Consensus 554 ~~~l~~~~~~~ 564 (601)
.+-.+.....-
T Consensus 185 KkD~E~vL~LE 195 (536)
T KOG4648|consen 185 KKDCETVLALE 195 (536)
T ss_pred HHhHHHHHhhC
Confidence 88877665543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.47 E-value=34 Score=33.11 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=50.9
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHHhcCCC-CCchHHHHHHHH-HHcCCHHHHHHHHHHHhh
Q 045105 499 DSVMWGAL---LGGCVSHGNLEFGQIAADRLIELEPN-NTGNYVMLANLF-AYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 499 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~l~~~~~ 562 (601)
|...|.++ +..+.+.|-+..|.++.+.+..++|. ||......++.| .++++++-..++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555554 45577899999999999999999998 887766666666 578999999999887765
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.51 E-value=3.1 Score=22.48 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 536 NYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.+..++.++...|++++|...+++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.96 E-value=80 Score=33.41 Aligned_cols=150 Identities=13% Similarity=0.022 Sum_probs=91.4
Q ss_pred CCCchhHHHHHhhCCC----CCcc-----chHHHHHHHHhcCChHHHHHHHHHhhhcCC---CCCChhhHHHH-HHHHhh
Q 045105 5 CGSLDDAKKVFKMMPE----RDCV-----SWNSVVTACAANGLVLEALECLERMSSLDN---ETPNLVSWSAV-IGGFTQ 71 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~----~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~~~l-i~~~~~ 71 (601)
..+++.|+..+++... ++.. +...++..+.+.+... |...++...+... ..+-...|..+ +..+..
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 4678999999988752 2221 2334556666666655 9888888766421 12233444444 333334
Q ss_pred cCChHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHH--hcCCcchHHHHHHHHHHhcC---------CCchHHHHHHHH
Q 045105 72 NGYDEEAIGMLFRMQAEG---LEPNARTLSSVLPACA--RLQKLSLGKEFHGYITRNGF---------MSNPFVVNGLVD 137 (601)
Q Consensus 72 ~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~l~~ 137 (601)
.+++..|.+.++.+.... ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 479999999998886542 3455556666666654 34556677777776644332 335567777776
Q ss_pred HHH--hcCCHHHHHHHHhhc
Q 045105 138 VYR--RCGDMLSALKIFSKF 155 (601)
Q Consensus 138 ~~~--~~~~~~~a~~~~~~~ 155 (601)
.++ ..|+++.+...++++
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 654 467777777665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.69 E-value=13 Score=37.51 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFR 84 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 84 (601)
+|+++.|..++..++++ .-+.+...+.++|-.++|+++-.. |+. - .....+.|+.+.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D--------~d~-r----Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTD--------PDQ-R----FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCC--------hhh-h----hhhhhhcCcHHHHHHHHHh
Confidence 46666666666665532 234455556666666666644221 110 1 1223445666666655544
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHH
Q 045105 85 MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCN 164 (601)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (601)
.. +..-|..|-++....+++..|.+.|...... ..|+-.+...|+.+....+-...... ...|
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N 725 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ--GKNN 725 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh--cccc
Confidence 32 3445666666666666666666666655432 23444444444444332222222110 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 045105 165 TIIVGYCENGNVAEARELFDQ 185 (601)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~ 185 (601)
....++...|+++++.+++..
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 223345556777777666644
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.43 E-value=27 Score=34.21 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=57.1
Q ss_pred HcCChhhHHH-HHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHH
Q 045105 410 MHGHGKEGIA-HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAY 488 (601)
Q Consensus 410 ~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 488 (601)
..|+...|-+ ++.-+....-.|+..-..+. .+...|+++.+.+.+... +.-+.....+..++++-..+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~-~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDV-EKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhch-hhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455544433 33334433334444333322 234566666666666432 2223333445556666666666666666
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 489 EFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 489 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.+-..| +.+ .++.+...........|-++++.-.+++...++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 665555 211 12222222222333445566666666666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 5e-13
Identities = 69/497 (13%), Positives = 139/497 (27%), Gaps = 156/497 (31%)
Query: 38 LVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTL 97
+ L+ + + + W + E + ML ++ + ++PN +
Sbjct: 166 VALDVC----LSYKVQCKMDFKIFW---LN-LKNCNSPETVLEMLQKLLYQ-IDPNWTSR 216
Query: 98 SSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLV---DVYRRCGDMLSALKIFSK 154
S +L+ S+ E R S P+ N L+ +V K ++
Sbjct: 217 SDHSSN-IKLRIHSIQAEL-----RRLLKSKPYE-NCLLVLLNVQNA--------KAWNA 261
Query: 155 FSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214
F++ C ++ V + IS + DE
Sbjct: 262 FNLS----CKILLT--TRFKQVTDFLS--------AATTTHISLDHHSMTLTP----DEV 303
Query: 215 FSMFRDLL-MRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALV 273
S+ L R P + +++ + ++
Sbjct: 304 KSLLLKYLDCRPQDLPRE--------VLT----------TNPRRLSI-------IAESIR 338
Query: 274 EMYCRYQDLVAAQMAFDEIEN-IENLLGKMKEDG----------FEPNVY--------TW 314
+ + + + D++ IE+ L ++ F P+ + W
Sbjct: 339 DGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 315 NA------MQLFSEMLS---LDLTPDIYTVGIILSACSSLATMERGKQVH-----AYAIR 360
M + +++ ++ P T+ I +E +H Y I
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH----GHGKE 416
+DSD + +D Y H + + H H +
Sbjct: 457 KTFDSD-DLIPPYLDQY----FYSH--IGH--------------------HLKNIEHPER 489
Query: 417 GIAHFRRILASGFRPDHISFLSA-----LSACVHAGSIKTGSEFFDLMAYYD-VKPSLKH 470
+ FR + FR FL +A +GSI + L Y + +
Sbjct: 490 -MTLFRMVFLD-FR-----FLEQKIRHDSTAWNASGSIL--NTLQQLKFYKPYICDNDPK 540
Query: 471 YTCMV----DLLSRAGE 483
Y +V D L + E
Sbjct: 541 YERLVNAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 88/538 (16%), Positives = 157/538 (29%), Gaps = 174/538 (32%)
Query: 142 CGDMLSALK-IFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLG---VQRGIIS 197
C D+ K I SK I + I+ V+ LF + VQ+ +
Sbjct: 35 CKDVQDMPKSILSKEEIDH-------IIM--SKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 198 ---------WNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLR 248
+ + + S+ + RD L D F N R
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND---NQVFA---------KYNVSR 133
Query: 249 KGKEIHALAIAL-GLQSDTFV-----GGA----LVEMYCRYQDLVAAQMAF--------- 289
+ L AL L+ V G+ + C V +M F
Sbjct: 134 L-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKN 191
Query: 290 -----DEIENIENLLGKMK------EDGFEPNVYTWNAMQ-----LFSE------MLSLD 327
+E ++ LL ++ D +++Q L +L L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 328 LTPDIYTVGIILS---ACSSLATMERGKQVHAY--AIRCGYDSDVHIGTALVDMYAKCGS 382
++ + +C L T R KQV + A + S H L K S
Sbjct: 252 ---NVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--S 305
Query: 383 LKHARLA-YKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALS 441
L L Y DL + + + P +S ++
Sbjct: 306 L----LLKYLDCRPQDLPRE-------VLTTN-----------------PRRLSIIAES- 336
Query: 442 ACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM---------VDLLSRAGELGEAYE--- 489
I+ G +D + KH C +++L A E + ++
Sbjct: 337 -------IRDGLATWD---NW------KHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLS 379
Query: 490 -FIK--KIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546
F IP S++W ++ V + ++ L+E +P + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYSLVEKQPKESTISIP------- 429
Query: 547 AGRWSDLA-RTRQKMKDRR-MHKSPGCSWIEDRDEIHK-FRASDRSHDRSEE-IYTII 600
+ + K+++ +H+S I D I K F + D ++ Y+ I
Sbjct: 430 -----SIYLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 3e-09
Identities = 14/164 (8%), Positives = 46/164 (28%), Gaps = 7/164 (4%)
Query: 85 MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144
+ P L+ +L L + + G ++ +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 145 MLSALKIFSKF-------SIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIIS 197
+ A + + N +++G+ G E + ++ G+ ++S
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 198 WNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
+ + + + + ++G++ + +L
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 1e-07
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 7/142 (4%)
Query: 7 SLDDAKKVFKMMPER----DCVSWNSVVTACAANGLVLEALECLERMSSL--DNETPNLV 60
SLD + + + C + A L + L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL-QKLSLGKEFHGY 119
++AV+ G+ + G +E + +LF ++ GL P+ + ++ L R Q +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 120 ITRNGFMSNPFVVNGLVDVYRR 141
+++ G L+ R
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 7e-07
Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 9/191 (4%)
Query: 316 AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375
A L +P + +L +++ + + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 376 MYAKCGSLKHA-------RLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG 428
L A ++ L NA++ +A G KE + + +G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 429 FRPDHISFLSALSACVHAG-SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487
PD +S+ +AL T + M+ +K ++ RA + +A
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-VLKA 254
Query: 488 YEFIKKIPMAP 498
+K P
Sbjct: 255 VHKVKPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 7e-05
Identities = 15/138 (10%), Positives = 39/138 (28%), Gaps = 11/138 (7%)
Query: 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDL--LMRDGIEPTSF 232
++ + Q + + + A + + T
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 233 TFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292
+ +V++ A + ++ + + GL D A ++ R +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD---------QDA 217
Query: 293 ENIENLLGKMKEDGFEPN 310
IE L +M ++G +
Sbjct: 218 GTIERCLEQMSQEGLKLQ 235
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 9/193 (4%)
Query: 364 DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRR 423
+ DV L Y K S P+L + A H +A R
Sbjct: 31 ERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90
Query: 424 ILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE 483
++ + +FL ++ + SL+ V +L +
Sbjct: 91 EMSRSVDVTNTTFLLMAASIYFYDQ-----NPDAALRTLHQGDSLECMAMTVQILLKLDR 145
Query: 484 LGEAYEFIKK-IPMAPDSVM-WGALLGGCVSHGNLEFGQ--IAADRLIELEPNNTGNYVM 539
L A + +KK D+ + A ++ G + + +
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205
Query: 540 LANLFAYAGRWSD 552
A GRW
Sbjct: 206 QAACHMAQGRWEA 218
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 601 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.1 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.02 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.01 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.65 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.47 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.38 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.38 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.37 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.3 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.29 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.13 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.11 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.02 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.02 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.01 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.9 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.83 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.83 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.8 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.74 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.64 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.59 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.29 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.26 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.15 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.15 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.97 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.95 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.91 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.83 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.24 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.2 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.19 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.07 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.69 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.48 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.4 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.24 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.74 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.3 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.46 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.57 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.49 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.51 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.41 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.32 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.78 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.67 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.57 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.56 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.5 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.27 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.37 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.75 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.7 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.41 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.95 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.67 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.29 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.16 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 81.6 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.25 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=342.61 Aligned_cols=485 Identities=8% Similarity=-0.015 Sum_probs=396.0
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcch
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSL 112 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (601)
+.+.|.+..+...+.. .+.++...|+.++..|.+.|++++|..+|++|.+ ..|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNT-----DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCcccc-----chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 4445666666666655 3447889999999999999999999999999985 46788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------------------chhHHHHHHHHHhc
Q 045105 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN-------------------EVSCNTIIVGYCEN 173 (601)
Q Consensus 113 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~li~~~~~~ 173 (601)
|..+++.+... +++..+++.++.+|.+.|++++|.++|+++...+ ..+|+.++.+|.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999988653 6788999999999999999999999999655333 67899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHH--H-HHHHHHcCCCCCChhhHHHHHHHhcccCCHHHH
Q 045105 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFS--M-FRDLLMRDGIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~--~-~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
|++++|.++|++|...+ +.+...+..+...+...+..+.+.. + +..+.. .+..+...+|..++..|.+.|++++|
T Consensus 214 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK-EDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG-GGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCccccc-chHHHHHHHHHHHHHHHcCcchHHHH
Confidence 99999999999998765 2344455555554443332222111 1 333333 34444556677778889999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC
Q 045105 251 KEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP 330 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 330 (601)
.++++.+.+. +++..+++.++.+|.+.|++++|..+|+ ++.+.+ +.
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------~~~~~~----------------------~~ 337 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT----------KILEID----------------------PY 337 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH----------HHHHHC----------------------TT
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH----------HHHHcC----------------------cc
Confidence 9999998766 5889999999999999999999999999 554221 22
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|..+|+++. +.+..+|+.++.+
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678889999999999999999999998654 4578889999999999999999999999875 4567899999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999864 4577899999999999999999999998777654 44678999999999999999999
Q ss_pred HHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 488 YEFIKKI-------PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 488 ~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
+++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+..|+++.++..++.+|.+.|++++|.+.++
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999887 44676 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC
Q 045105 559 KMKDRRM 565 (601)
Q Consensus 559 ~~~~~~~ 565 (601)
++.+..+
T Consensus 575 ~~l~~~p 581 (597)
T 2xpi_A 575 ESLAISP 581 (597)
T ss_dssp HHHHHCT
T ss_pred HHHhcCC
Confidence 9988763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=344.92 Aligned_cols=499 Identities=8% Similarity=-0.062 Sum_probs=410.4
Q ss_pred CCCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 4 KCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
+.|.+..+...|...+.++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4566777778888877788899999999999999999999999999863 4677899999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh---------------cCCCchHHHHHHHHHHHhcCCHHHH
Q 045105 84 RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRN---------------GFMSNPFVVNGLVDVYRRCGDMLSA 148 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~~~~~~a 148 (601)
++... +++..+++.++.++.+.|++++|.++|+++... |.+++..+++.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 98653 788899999999999999999999999953221 2234678999999999999999999
Q ss_pred HHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHH--HH-HHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 149 LKIFSKFSI--K-NEVSCNTIIVGYCENGNVAEAR--EL-FDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 149 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~--~~-~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
.+.|+++.. | +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.
T Consensus 220 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 999999873 3 3445555555444333332221 11 4555555555566677778889999999999999999987
Q ss_pred HcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 223 MRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 223 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
. .+++..++..++..+.+.|++++|.++|+.+.+.+ +.+..+++.++.+|.+.|++++|..+++ .+
T Consensus 300 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------~~ 365 (597)
T 2xpi_A 300 G---LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISN----------DL 365 (597)
T ss_dssp T---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHH----------HH
T ss_pred c---CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH----------HH
Confidence 5 25889999999999999999999999999999876 4478889999999999999999999998 44
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
.+. .+.+..++..+...|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|+
T Consensus 366 ~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 366 VDR----------------------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHH----------------------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred Hhh----------------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 411 23456788889999999999999999999998864 3467899999999999999
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 383 LKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 383 ~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
+++|..+|+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+.+
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999875 4578899999999999999999999999999864 556789999999999999999999999777
Q ss_pred Hhc----CCCcC--chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 460 AYY----DVKPS--LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 460 ~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
.+. +..|+ ..+|..++.+|.+.|++++|++.++++ ...| +..+|..+...|...|++++|.+.++++.+++|
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 665 66777 679999999999999999999999987 3345 789999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHH
Q 045105 532 NNTGNYVMLANLFA 545 (601)
Q Consensus 532 ~~~~~~~~l~~~~~ 545 (601)
+++..+..++.+|.
T Consensus 582 ~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 582 NEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHh
Confidence 99999999988774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=247.22 Aligned_cols=207 Identities=13% Similarity=0.116 Sum_probs=152.1
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---------cc
Q 045105 41 EALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK---------LS 111 (601)
Q Consensus 41 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~ 111 (601)
.+..+.+.+.+.+....+...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666655333333456888899999999999999999999999999999999999999887654 45
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGV 191 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 191 (601)
.|.++|++|.+.|+.||..+|+.+|.+|++.|+ +++|.++|++|...|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~-------------------------------~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDD-------------------------------PEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-------------------------------HHHHHHHHHHHHHcCC
Confidence 678888888888888877777777666666554 4455556666667778
Q ss_pred CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045105 192 QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGA 271 (601)
Q Consensus 192 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 271 (601)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..||+.
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 88888888888888888888888888888877 78888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhc
Q 045105 272 LVEMYCRY 279 (601)
Q Consensus 272 li~~~~~~ 279 (601)
++..|+..
T Consensus 216 l~~~F~s~ 223 (501)
T 4g26_A 216 IEEWFKSE 223 (501)
T ss_dssp HHHHHHSH
T ss_pred HHHHHhcC
Confidence 88877754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=221.18 Aligned_cols=377 Identities=11% Similarity=0.045 Sum_probs=237.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
...+.+.|++++|++.++.+.+ ..|.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3445566667777766666665 334445555666666666666666666666655542 3345556666666666666
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
+++|...|+.+.+.. +.+... |..+..++.+.|++++|.+.|+++...
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDG-------------------------------YINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHH-------------------------------HHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHH-------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666555532 222333 444444444555555555555555444
Q ss_pred CCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhH
Q 045105 190 GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFV 268 (601)
Q Consensus 190 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (601)
. +.+...+..+...+...|++++|.+.|+++.. ..|+ ..++..+...+...|+++.|...++.+.+.. +.
T Consensus 131 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---- 201 (388)
T 1w3b_A 131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN---- 201 (388)
T ss_dssp C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT----
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC----
Confidence 2 22334455566666667777777777776665 1222 2233333333333333333333333332221 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCch
Q 045105 269 GGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATM 348 (601)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 348 (601)
T Consensus 202 -------------------------------------------------------------------------------- 201 (388)
T 1w3b_A 202 -------------------------------------------------------------------------------- 201 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
+...+..+...+...|++++|...|++.. +.+..++..+...|...|++++|+..|+++.
T Consensus 202 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 202 -----------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp -----------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11222233333333444444444443332 2345567777788888888888888888888
Q ss_pred HCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 045105 426 ASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMW 503 (601)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 503 (601)
+.. +.+..+|..+..++.+.|++++|...++.+.+.. +.+..++..+...+.+.|++++|++.++++ ...| +..++
T Consensus 265 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 853 3345678888889999999999999997766653 556778899999999999999999999887 4445 57789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
..+...+.+.|++++|.+.++++.+..|+++.++..++.++...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=243.06 Aligned_cols=210 Identities=11% Similarity=0.045 Sum_probs=145.0
Q ss_pred HHHHHHHHHHcCCCCCCh-hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhH
Q 045105 214 AFSMFRDLLMRDGIEPTS-FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292 (601)
Q Consensus 214 a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 292 (601)
+..+.+++.+ .+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+....+
T Consensus 9 ~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3444555554 5555544 357788888888999999999999998888888888888888888876643211
Q ss_pred HHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhH
Q 045105 293 ENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTA 372 (601)
Q Consensus 293 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (601)
......-.++.+|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 22223334567777777778888888888888888887888888888877777777777777777
Q ss_pred HHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc
Q 045105 373 LVDMYAKCGSLKHARLAYKRIS----TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (601)
+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 7777777777777777777765 4677777777777777777777777777777777777777777777766553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-25 Score=215.37 Aligned_cols=356 Identities=12% Similarity=0.024 Sum_probs=259.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHH
Q 045105 169 GYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLR 248 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 248 (601)
.+.+.|++++|.+.+.++.... +.+...+..+...+...|++++|...++.... ..+.+...|..+...+...|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHH
Confidence 3444555555555555554432 22333444444555555666666655555543 12334455555555566666666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC
Q 045105 249 KGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL 328 (601)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 328 (601)
+|...++.+.+.. +.+...+..+..++.+.|++++|...|+ .+.+ .
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~----------~al~-----------------------~ 130 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYV----------SALQ-----------------------Y 130 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHH----------HHHH-----------------------H
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHH----------HHHH-----------------------h
Confidence 6666666555542 2234456666666667777777766666 3321 1
Q ss_pred CCC-HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHH
Q 045105 329 TPD-IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAM 404 (601)
Q Consensus 329 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l 404 (601)
.|+ ...+..+...+...|++++|...+..+.+.. +.+...+..+...+.+.|++++|...|+++. +.+...|..+
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 122 2234455566667777777777777777654 2356778888889999999999999998876 3456688889
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
...+...|++++|+..+++..... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..++.+.|++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998853 3346788999999999999999999997776643 33467899999999999999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 485 GEAYEFIKKI-PM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 485 ~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
++|++.++++ .. +.+..++..+...+...|++++|.+.++++.+..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999988 22 447889999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 045105 563 RR 564 (601)
Q Consensus 563 ~~ 564 (601)
..
T Consensus 368 ~~ 369 (388)
T 1w3b_A 368 IS 369 (388)
T ss_dssp TC
T ss_pred hC
Confidence 54
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-23 Score=211.35 Aligned_cols=450 Identities=8% Similarity=-0.062 Sum_probs=296.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHH
Q 045105 59 LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV 138 (601)
Q Consensus 59 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 138 (601)
...|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|+++.|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455666677777777777777777777653 667777777777777777777777777776654 3344556666666
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 139 YRRCGDMLSALKIFSKFSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
+.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------ 150 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE------------ 150 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH------------
Confidence 6666666666655554431 1222222333333322222222222222222221121111111000
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---cCCHHHHHHHhhhH
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR---YQDLVAAQMAFDEI 292 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~ 292 (601)
. .......|+.......+..+........ ..-+.+...+..+...+.. .|++++|...|+
T Consensus 151 -~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-- 213 (514)
T 2gw1_A 151 -R----KDKQENLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFT-- 213 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH--
T ss_pred -H----HhhccCCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH--
Confidence 0 0001122333222222221111111000 0001224444444444554 899999999998
Q ss_pred HHHHHHHhhchh-----cCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCch
Q 045105 293 ENIENLLGKMKE-----DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDV 367 (601)
Q Consensus 293 ~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (601)
.+.+ ..-.|+.... .+.+...+..+...+...|+++.|...+..+.+.... .
T Consensus 214 --------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~ 270 (514)
T 2gw1_A 214 --------KAARLFEEQLDKNNEDEKL-------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--V 270 (514)
T ss_dssp --------HHHHHHHHHTTTSTTCHHH-------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--H
T ss_pred --------HHHHHhhhhhccCcccccc-------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--H
Confidence 3332 1001111100 0123456778888999999999999999999987654 8
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh
Q 045105 368 HIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
..+..+...+...|++++|...++.+. +.+...+..+...|...|++++|+..+++..+.. +.+...+..+...+.
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHH
Confidence 888889999999999999999998875 3466788999999999999999999999999864 335568888999999
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---c
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI----PMAPD----SVMWGALLGGCVS---H 513 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~---~ 513 (601)
..|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++ +..++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999997766543 345678889999999999999999999887 21222 3488899999999 9
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 514 GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
|++++|.+.++++.+..|+++.++..++.+|...|++++|.+.+++..+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-22 Score=204.19 Aligned_cols=449 Identities=10% Similarity=-0.006 Sum_probs=320.0
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
..+..+...+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|++.++++.+.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 456777889999999999999999999852 689999999999999999999999999998864 4456789999999
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI----KNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a 179 (601)
+...|++++|...|+.+.+.+ +++......++..+........+.+.+..+.. ++...+..-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER---------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH----------
Confidence 999999999999999999876 34445555555555444333333333332221 111111000000
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhc---ccCCHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACA---DMNSLRKGKEIHA 255 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~---~~~~~~~a~~~~~ 255 (601)
.......|+.. .+..+........... .-..|+ ...+......+. +.|+++.|...++
T Consensus 152 ------~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 152 ------KDKQENLPSVT----SMASFFGIFKPELTFA--------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -----------CCCCHH----HHHHHHTTSCCCCCCS--------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred ------HhhccCCchhH----HHHHHHhhcCHHHHHH--------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 00000011111 1111111111100000 000122 222222222222 4788888888888
Q ss_pred HHHH-----cCC--------CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHH
Q 045105 256 LAIA-----LGL--------QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSE 322 (601)
Q Consensus 256 ~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (601)
.+.+ ..- +.+..++..+..++...|++++|...++ ...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~----------~~l~~----------------- 266 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK----------KAIEL----------------- 266 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH----------HHHHH-----------------
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHH----------HHHhh-----------------
Confidence 8877 311 2235677888999999999999999998 44321
Q ss_pred HHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChh
Q 045105 323 MLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLV 399 (601)
Q Consensus 323 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~ 399 (601)
.|+...+..+...+...|+++.|...+..+.+.. +.+...+..+...+...|++++|...|+++. +.+..
T Consensus 267 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 339 (514)
T 2gw1_A 267 ------FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339 (514)
T ss_dssp ------CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH
T ss_pred ------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH
Confidence 2335667888899999999999999999988764 3367788889999999999999999999875 44567
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-CcC----chHHHHH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV-KPS----LKHYTCM 474 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 474 (601)
.+..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+..... .++ ...+..+
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 88899999999999999999999998863 33456888899999999999999999966555321 122 3388899
Q ss_pred HHHhhh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 045105 475 VDLLSR---AGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 475 ~~~~~~---~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
..++.. .|++++|.+.++++ ...| +..++..+...|...|++++|.+.++++.+..|+++..+..+
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999 99999999999987 2334 677888999999999999999999999999999877776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-21 Score=197.62 Aligned_cols=434 Identities=11% Similarity=-0.007 Sum_probs=216.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 62 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 3334444444444444444444444331 2233344444444444444444444444444432 2233444445555555
Q ss_pred cCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCeeehHHHHHHHHhCCChhHHHHHHH
Q 045105 142 CGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLG--VQRGIISWNSMISGYVDNSLYDEAFSMFR 219 (601)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 219 (601)
.|++++|...|+.+. .+.......+..+...+....|...++++.... ..+........+..+....+.+.+...+.
T Consensus 106 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 555555555554221 111111222333333444455666666654321 11222233444555556666665555443
Q ss_pred HHHHcCCCCCChhhHHHHHH-Hhcc--------cCCHHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcCCHHH
Q 045105 220 DLLMRDGIEPTSFTFGSVLI-ACAD--------MNSLRKGKEIHALAIALGLQSD------TFVGGALVEMYCRYQDLVA 284 (601)
Q Consensus 220 ~~~~~~~~~p~~~~~~~ll~-~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~ 284 (601)
... ...|....+...+. .+.. .|+++.|..+++.+.+...... ..++..+...+...|++++
T Consensus 185 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 185 TSS---NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCC---SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hcc---ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 321 12222222222221 1111 1356666666666665432211 1235555666777777777
Q ss_pred HHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCC
Q 045105 285 AQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYD 364 (601)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (601)
|...++ ...+ ..|+...+..+...+...|+++.|...+..+.+...
T Consensus 262 A~~~~~----------~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 307 (537)
T 3fp2_A 262 AQVLLQ----------ESIN-----------------------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP- 307 (537)
T ss_dssp HHHHHH----------HHHH-----------------------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-
T ss_pred HHHHHH----------HHHh-----------------------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-
Confidence 777777 3331 123445566667777777777777777777766542
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHH
Q 045105 365 SDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALS 441 (601)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (601)
.+..++..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+...+..+..
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 386 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAE 386 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 245566666666777777777777766654 2344566666666677777777777777666642 233445666666
Q ss_pred HHhccCchHHHHHHHHHHHhcCCC-cC----chHHHHHHHHhhhc----------CChHHHHHHHHhC-CCCC-CHHHHH
Q 045105 442 ACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYTCMVDLLSRA----------GELGEAYEFIKKI-PMAP-DSVMWG 504 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~~-~~~~~~ 504 (601)
.+...|++++|...++...+.... ++ ...+..+..++.+. |++++|+..++++ ...| +...+.
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 666677777777766444332211 00 11122233445555 6666666666655 2223 445566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
.+...|...|++++|.+.++++.++.|+++..
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 66666666666666666666666666654433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-21 Score=191.31 Aligned_cols=217 Identities=12% Similarity=0.107 Sum_probs=180.8
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCh
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHG 414 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 414 (601)
+...+...|+++.|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++. +.+..+|..+...|...|++
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455777899999999999998865 3477888899999999999999999999886 46778999999999999999
Q ss_pred hhHHHHHHHHHHCCCCccH-HhHHHH------------HHHHhccCchHHHHHHHHHHHhcCCCcC-----chHHHHHHH
Q 045105 415 KEGIAHFRRILASGFRPDH-ISFLSA------------LSACVHAGSIKTGSEFFDLMAYYDVKPS-----LKHYTCMVD 476 (601)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 476 (601)
++|+..|+++... .|+. ..+..+ ...+...|++++|...++.+... .|+ ...+..+..
T Consensus 228 ~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 228 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 9999999999975 4443 444444 78899999999999999776664 344 347888899
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH-----------
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANL----------- 543 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~----------- 543 (601)
++.+.|++++|+..++++ ...| +...|..+..+|...|++++|.+.++++.++.|+++.++..++.+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999987 3345 688999999999999999999999999999999999999998854
Q ss_pred -HHHcC-----CHHHHHHHHHH
Q 045105 544 -FAYAG-----RWSDLARTRQK 559 (601)
Q Consensus 544 -~~~~g-----~~~~A~~~l~~ 559 (601)
|...| +.+++.+.+++
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHhCCCccCCHHHHHHHHHH
Confidence 44444 55666777665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=192.35 Aligned_cols=429 Identities=11% Similarity=-0.001 Sum_probs=316.0
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...|..+...+.+.|++++|+..|+++.+ ..+.+..+|..+..+|.+.|++++|++.+++..+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45678888999999999999999999998 456788999999999999999999999999998864 446778888999
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK------NEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 176 (601)
.+...|++++|...|+ .... .|+. ....+..+...+....|...++.+... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999996 3332 2221 122344455566667888888887632 222234455556667777
Q ss_pred HHHHHHHHHHHhcCCCCCee-ehHHHHHHHHh--------CCChhHHHHHHHHHHHcCCCCCCh--------hhHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGII-SWNSMISGYVD--------NSLYDEAFSMFRDLLMRDGIEPTS--------FTFGSVLI 239 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~--------~~~~~ll~ 239 (601)
+.+...+...... .+... ....+...+.. .|++++|..+++++.. ..|+. ..+..+..
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HCCCcchhhHHHHHHHHHHHH
Confidence 6665554443321 11111 22222222222 2478999999999875 34442 24556667
Q ss_pred HhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHH
Q 045105 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQL 319 (601)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (601)
.+...|+++.|...++.+.+.. |+...+..+..+|...|++++|...++ ...+.
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~-------------- 305 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ----------KAVDL-------------- 305 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH----------HHHHH--------------
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH----------HHhcc--------------
Confidence 7888999999999999999875 447888899999999999999999998 43311
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CC
Q 045105 320 FSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TP 396 (601)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~ 396 (601)
.+.+..++..+...+...|+++.|...++.+.+... .+...+..+...+...|++++|...++++. +.
T Consensus 306 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 306 --------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 123577889999999999999999999999998753 356788889999999999999999999876 45
Q ss_pred ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCC-c----cHHhHHHHHHHHhcc----------CchHHHHHHHHHHHh
Q 045105 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFR-P----DHISFLSALSACVHA----------GSIKTGSEFFDLMAY 461 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~ 461 (601)
+...+..+...|...|++++|...|+++.+.... + ....+......+... |++++|...++...+
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 5678999999999999999999999998875311 1 111234445667777 999999999977666
Q ss_pred cCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH
Q 045105 462 YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS 500 (601)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 500 (601)
.. +.+...+..+..+|.+.|++++|.+.|+++ ...|+.
T Consensus 457 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 457 LD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 53 345678899999999999999999999987 334543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-20 Score=182.73 Aligned_cols=254 Identities=10% Similarity=-0.002 Sum_probs=150.1
Q ss_pred hHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 045105 10 DAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQ 86 (601)
Q Consensus 10 ~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 86 (601)
.+...|.++... +...+..+...+.+.|++++|+.+|+.+.+ ..+.+..+|..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444432 345677777788888888888888888777 355677788888888888888888888888887
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch---HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhH
Q 045105 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP---FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSC 163 (601)
Q Consensus 87 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (601)
+.+ +.+..++..+...+...|++++|...|+.+.+.. +.+. ..+..+...+...+ +
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-------------------~ 146 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR-------------------L 146 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-------------------H
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-------------------H
Confidence 763 3346677777777888888888888888877653 2233 44444444321111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
..+...+.+.|++++|...|+++.... +.+..++..+..+|.+.|++++|+..|+++... .+.+..++..+...+..
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 122334555566666666666665543 234455666666666666666666666665542 12344555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHH------------HHHHHHhcCCHHHHHHHhh
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTFVGGA------------LVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~g~~~~a~~~~~ 290 (601)
.|+++.|...++.+.... +.+...+.. +..++.+.|++++|...|+
T Consensus 224 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666665442 112222222 2566666777777766666
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-17 Score=158.88 Aligned_cols=322 Identities=11% Similarity=0.048 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 045105 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240 (601)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 240 (601)
..+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...++++... .|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~----------- 68 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---KM----------- 68 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC-----------
Confidence 345555666666666666666666666543 234455556666666666666666666665541 22
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCC---C-hhhhhH
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP---N-VYTWNA 316 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~---~-~~~~~~ 316 (601)
.+...+..+..+|...|++++|...++ ...+. .| + ...+..
T Consensus 69 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~--~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 69 -----------------------DFTAARLQRGHLLLKQGKLDEAEDDFK----------KVLKS--NPSEQEEKEAESQ 113 (359)
T ss_dssp -----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHH----------HHHTS--CCCHHHHHHHHHH
T ss_pred -----------------------CcchHHHHHHHHHHHcCChHHHHHHHH----------HHHhc--CCcccChHHHHHH
Confidence 123344455555555555555555555 22211 11 0 000000
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-- 394 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 394 (601)
+..+.. ...+..+...+...|+++.|...+..+.+... .+...+..+...+...|++++|...++++.
T Consensus 114 l~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 114 LVKADE---------MQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL 183 (359)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHH---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000000 00112234455566677777777766665542 344555566666666666666666665544
Q ss_pred -CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHH------------HHHHHHhccCchHHHHHHHHHHHh
Q 045105 395 -TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFL------------SALSACVHAGSIKTGSEFFDLMAY 461 (601)
Q Consensus 395 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~ 461 (601)
+.+...+..+...|...|++++|...+++..+.. +.+...+. .+...+.+.|++++|...++...+
T Consensus 184 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344555566666666666666666666665532 11122221 113334445555555555533333
Q ss_pred cCCCcCc----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 462 YDVKPSL----KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 462 ~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
.... +. ..+..+..++.+.|++++|++.+++. ...| +...+..+...+...|++++|.+.++++.+.+|+++.
T Consensus 263 ~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 263 TEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred cCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 2211 11 11223344444555555555555444 1122 3444444444555555555555555555555554444
Q ss_pred hHHHHHHHH
Q 045105 536 NYVMLANLF 544 (601)
Q Consensus 536 ~~~~l~~~~ 544 (601)
+...+..+.
T Consensus 342 ~~~~l~~~~ 350 (359)
T 3ieg_A 342 IREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-17 Score=159.30 Aligned_cols=297 Identities=8% Similarity=-0.008 Sum_probs=228.5
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhh
Q 045105 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYT 313 (601)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 313 (601)
+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...++ ...+.
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~----------~~~~~-------- 66 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLT----------KVIAL-------- 66 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH----------HHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHH----------HHHHh--------
Confidence 3334444455555555555555555443 3345677788888889999999998888 33311
Q ss_pred hhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCC--CchhHHhHH------------HHHHHh
Q 045105 314 WNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYD--SDVHIGTAL------------VDMYAK 379 (601)
Q Consensus 314 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~ 379 (601)
.+.+...+..+...+...|++++|...+..+.+.... .+...+..+ ...+..
T Consensus 67 --------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 67 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124566788888999999999999999998875430 234444444 578889
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH
Q 045105 380 CGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
.|++++|...++++. +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999876 4567788899999999999999999999999863 556678999999999999999999999
Q ss_pred HHHHhcCCCcCchHHH------------HHHHHhhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhH
Q 045105 457 DLMAYYDVKPSLKHYT------------CMVDLLSRAGELGEAYEFIKKI-PMAPD-S----VMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~g~~~~ 518 (601)
+...+.. +.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 7666543 22233332 2366788999999999999887 23443 2 234457788899999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 519 GQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
|.+.++++.+..|+++.++..++.++...|++++|.+.++++.+..+
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999987753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-15 Score=155.00 Aligned_cols=425 Identities=10% Similarity=0.056 Sum_probs=263.1
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHHHHH
Q 045105 93 NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTIIVGY 170 (601)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~ 170 (601)
+...|..++.. .+.|+++.|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|++... |+...|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55567766663 5667777777777777765 244566777777777777777777777777653 4444455444322
Q ss_pred -HhcCCHHHHHH----HHHHHHh-cCCCC-CeeehHHHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCCh---
Q 045105 171 -CENGNVAEARE----LFDQMEH-LGVQR-GIISWNSMISGYVD---------NSLYDEAFSMFRDLLMRDGIEPTS--- 231 (601)
Q Consensus 171 -~~~g~~~~a~~----~~~~m~~-~g~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~--- 231 (601)
...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.+. . |..
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~---P~~~~~ 165 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N---PMINIE 165 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S---CCTTHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c---hhhhHH
Confidence 33455555544 5555443 24333 33445555554433 4556666666666553 1 221
Q ss_pred hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCCh
Q 045105 232 FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNV 311 (601)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (601)
..|..........+ ..+...++. .+.+++..|..++..++.....+..... .+.|+.
T Consensus 166 ~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~-~~~p~~ 222 (530)
T 2ooe_A 166 QLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP-SVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC-CCCCC-
T ss_pred HHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc-cCCCCC
Confidence 11111110000000 000011111 1234566666666644443333322110 012211
Q ss_pred hh--hhHHHHHHHHHhCCCCCCHhHHHHHHHHhc----CCCch----hhHHHHHHHHHHhCCCCchhHHhHHHHHHHh--
Q 045105 312 YT--WNAMQLFSEMLSLDLTPDIYTVGIILSACS----SLATM----ERGKQVHAYAIRCGYDSDVHIGTALVDMYAK-- 379 (601)
Q Consensus 312 ~~--~~~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 379 (601)
.. ... ...|...+.... ..++. .++..+++...... +.++..|..++..+.+
T Consensus 223 ~~~~~~~---------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 223 TPQEAQQ---------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp -CCHHHH---------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred ChhHHHH---------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 00 000 112222222111 11222 36667788777653 3467788888888775
Q ss_pred -----cCChH-------HHHHHHhcCCC---C-ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH--HhHHHHHH
Q 045105 380 -----CGSLK-------HARLAYKRIST---P-DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH--ISFLSALS 441 (601)
Q Consensus 380 -----~g~~~-------~a~~~~~~~~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~ 441 (601)
.|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++++. .|+. ..|..++.
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHH
Confidence 79987 89999998763 3 4678889999999999999999999999984 5643 47888888
Q ss_pred HHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH-hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 045105 442 ACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL-LSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 518 (601)
.+.+.|++++|..+|+...+.. +.+...|...... +...|+.++|..+|++. ...| +...|..++..+.+.|+.++
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 8889999999999997655532 2223333322222 33689999999999977 3345 57889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCc----hHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 519 GQIAADRLIELEPNNTG----NYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
|..+++++.+..|.++. .+...+......|+.+.+..+.+++.+.-+
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999876665 777778888889999999999998876554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-14 Score=153.32 Aligned_cols=409 Identities=11% Similarity=0.095 Sum_probs=283.5
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH
Q 045105 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL--EPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 58 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 135 (601)
++.--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +.....++.+.+... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 334446678888899999999999999884321 12234455566666665 555555555554421 13346
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 136 VDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6778888999999999998751 1122222222 678889988888865 34667888999999999999999
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHH
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENI 295 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 295 (601)
+.|.+. -|...|..+..++.+.|+++++.+++....+.. +++...+.++.+|++.+++++......
T Consensus 1126 dsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~----- 1191 (1630)
T 1xi4_A 1126 DSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN----- 1191 (1630)
T ss_pred HHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-----
Confidence 998652 367778888999999999999999998877755 333334458888888888775433322
Q ss_pred HHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 296 ENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...+..+...|...|++++|..+|... ..|..+..
T Consensus 1192 ---------------------------------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~ 1229 (1630)
T 1xi4_A 1192 ---------------------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 1229 (1630)
T ss_pred ---------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHH
Confidence 234445666888888999999999999874 36888899
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHH
Q 045105 376 MYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEF 455 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 455 (601)
.|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+
T Consensus 1230 tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999877 4457888888888888888888776654 233455566888888889999999999
Q ss_pred HHHHHhcCCCcCchHHHHHHHHhhh--cCChHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 045105 456 FDLMAYYDVKPSLKHYTCMVDLLSR--AGELGEAYEFIKKI-PMA------PDSVMWGALLGGCVSHGNLEFGQIAADRL 526 (601)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 526 (601)
++...... +-....|+-|..+|.+ -++..++.++|..- .+. -+...|..++..|.+.|+++.|....-.-
T Consensus 1303 lE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1303 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 85544332 3334466666666654 34566666666543 322 24567888888888888888887433222
Q ss_pred Hhc------------CCCCCchHHHHHHHHHHcC
Q 045105 527 IEL------------EPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 527 ~~~------------~p~~~~~~~~l~~~~~~~g 548 (601)
... .+.++..|...+..|...+
T Consensus 1382 ~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1382 PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 111 3457777777777776655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-17 Score=154.92 Aligned_cols=288 Identities=13% Similarity=0.044 Sum_probs=176.2
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGAL 272 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (601)
.+...+..+...+...|++++|+++|+++.... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 344445555555555566666666665555421 1222333334444445555555555555554432 2234445555
Q ss_pred HHHHHhcC-CHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhH
Q 045105 273 VEMYCRYQ-DLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERG 351 (601)
Q Consensus 273 i~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 351 (601)
...+...| ++++|...|+ ...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~----------~a~------------------------------------------------ 118 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLS----------KAT------------------------------------------------ 118 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHH----------HHH------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHH----------HHH------------------------------------------------
Confidence 55555566 5666655555 222
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 045105 352 KQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG 428 (601)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 428 (601)
+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...+++..+..
T Consensus 119 --------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 119 --------TLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp --------TTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --------HhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 111 1123334445555555555555555555543 2234555667777777788888888888777753
Q ss_pred CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC--------CCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-
Q 045105 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD--------VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP- 498 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~- 498 (601)
+.+...+..+...+...|++++|...++...+.. .+....++..+..+|...|++++|++.++++ ...|
T Consensus 190 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 190 -PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 3445677777778888888888888885544421 1333567788888888888888888888776 2233
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCHH
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF-AYAGRWS 551 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 551 (601)
+...+..+...+...|++++|.+.++++.+..|+++..+..++.++ ...|+.+
T Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 5677888888888888898999999988888888888888888887 4555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=157.90 Aligned_cols=251 Identities=16% Similarity=0.144 Sum_probs=103.6
Q ss_pred CCCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 4 KCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
+.|++++|.+.++++.+| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567888999999988555 4888999999999999999998865 2567788888999999999999999777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhH
Q 045105 84 RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSC 163 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (601)
..++. .+++.+.+.++.+|.+.|++..+.++++ .|+..+|..+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 66663 5557778888889999888888887774 366678888999999999999999999877 378
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
..++.++.+.|++++|.+.+..+ .++.+|..++.+|+..|+|+.|...... +...+.....++..|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHH
Confidence 88999999999999999988887 3677888899999999999998555543 22344445567788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHhh
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY--QDLVAAQMAFD 290 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~ 290 (601)
.|.++++..+++...... +.....|+-|.-+|++. ++..+.++.|.
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 899999988888887555 44556666666666654 33444444333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-16 Score=150.29 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=79.3
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchH
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLG 113 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 113 (601)
-+.|+.++|.++++++. +..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 35688999999999962 224999999999999999999999965 35777999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 045105 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQR 193 (601)
Q Consensus 114 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 193 (601)
..+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988877764 4557888999999999999999888876 367778888999999999999999998876
Q ss_pred CeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045105 194 GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALV 273 (601)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 273 (601)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 47888888999999999988888875 2677888888888888888888443322 223333344577
Q ss_pred HHHHhcCCHHHHHHHhh
Q 045105 274 EMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 274 ~~~~~~g~~~~a~~~~~ 290 (601)
..|.+.|.+++|..+++
T Consensus 215 ~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 215 NYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 77777777777776666
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-15 Score=149.53 Aligned_cols=364 Identities=13% Similarity=0.034 Sum_probs=220.1
Q ss_pred cCCHHHHHHHHhhcCC-CCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh----CCChh
Q 045105 142 CGDMLSALKIFSKFSI-KNEVSCNTIIVGYCE----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD----NSLYD 212 (601)
Q Consensus 142 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~ 212 (601)
.+++++|...|++... .+...+..+...|.. .+++++|.+.|++....| +...+..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444433321 133334444444444 444555555554444432 22333444444444 44555
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHH
Q 045105 213 EAFSMFRDLLMRDGIEPTSFTFGSVLIACAD----MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR----YQDLVA 284 (601)
Q Consensus 213 ~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 284 (601)
+|+..|++... .+ +...+..+-..+.. .++.+.|.+.|+...+.+ +...+..|...|.. .++.++
T Consensus 133 ~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 133 ESVKWFRLAAE-QG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 55555555443 22 23333333333333 445555555555555543 34445555555555 566666
Q ss_pred HHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC----CCchhhHHHHHHHHHH
Q 045105 285 AQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS----LATMERGKQVHAYAIR 360 (601)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~ 360 (601)
|...|+ ...+. .+...+..+...+.. .++.++|...++...+
T Consensus 206 A~~~~~----------~a~~~------------------------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 206 SAQWYR----------KSATS------------------------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHH----------HHHHT------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHH----------HHHHC------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 666655 22211 112222333333332 5667777777777666
Q ss_pred hCCCCchhHHhHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHHc-----CChhhHHHHHHHHHHCCCC
Q 045105 361 CGYDSDVHIGTALVDMYAK----CGSLKHARLAYKRIS-TPDLVSQNAMLTAYAMH-----GHGKEGIAHFRRILASGFR 430 (601)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~ 430 (601)
.+ ++..+..+...|.. .+++++|...|++.. ..+...+..+...|... +++++|+..|++..+.|
T Consensus 252 ~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 252 QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 54 34455556666666 788899999888776 35566777788888877 89999999999999875
Q ss_pred ccHHhHHHHHHHHhccC---chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHH
Q 045105 431 PDHISFLSALSACVHAG---SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGELGEAYEFIKKIPMAPDSVMW 503 (601)
Q Consensus 431 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 503 (601)
+...+..+...+...| ++++|.++|+...+.+ +...+..|...|.. .+++++|.+.+++.-...+...+
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 3445666666666655 7889999997766653 56678888888888 89999999999987323467778
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 504 GALLGGCVS----HGNLEFGQIAADRLIELEPN---NTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 504 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
..+...|.. .+|+++|...++++.+.+|+ ++.....++.++... .+.|.+..+++
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~ 464 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHH
Confidence 888888887 79999999999999999854 666777777665543 34444333333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-15 Score=144.75 Aligned_cols=264 Identities=11% Similarity=-0.004 Sum_probs=228.2
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
.++..+..+...+...|++++|+++|+.+.+ ..+.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVME--KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 5667888889999999999999999999988 456677888889999999999999999999998863 4456788888
Q ss_pred HHHHHhcC-CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCH
Q 045105 101 LPACARLQ-KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 101 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 176 (601)
...+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...|++.. ..+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 89999999 9999999999998865 4467789999999999999999999998876 33567788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCC-------CCCChhhHHHHHHHhcccCCHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDG-------IEPTSFTFGSVLIACADMNSLRK 249 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~ll~~~~~~~~~~~ 249 (601)
++|.+.+++..... +.+..++..+...+...|++++|...+++...... .+.....+..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998775 45667889999999999999999999998876321 13345688888999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
|...++...+.. +.+...+..+..+|...|++++|...++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999998875 4467888999999999999999999999
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-13 Score=144.87 Aligned_cols=450 Identities=11% Similarity=0.057 Sum_probs=316.4
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDN-ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++.--.....+|...|.+.+|++++++..-.+. +.-+....+.++.+..+. +..+..+..+++... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 334445667889999999999999999875311 124556777788887777 667777777776522 13446
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (601)
...+...|.+++|..+|+... ......+.++ -..+++++|.++.++.. +..+|..+..++...|++++|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 777888999999999999852 1222223332 27789999999999774 4678889999999999999999
Q ss_pred HHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 045105 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL 260 (601)
Q Consensus 181 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (601)
+.|.+. .|...|..++.++.+.|++++|.+.|....+ . .+++...+.+..+|++.++++....+.+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~LafaYAKl~rleele~fI~----- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFIN----- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHHHHHHHhhcCHHHHHHHHh-----
Confidence 999663 5677888899999999999999999987665 2 2444444458888999998886555431
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 045105 261 GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS 340 (601)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 340 (601)
.++...+..+...|...|++++|...|. .. ..|..+..
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~----------kA------------------------------~ny~rLA~ 1229 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYN----------NV------------------------------SNFGRLAS 1229 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHH----------hh------------------------------hHHHHHHH
Confidence 4455667779999999999999999999 21 25788999
Q ss_pred HhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHH
Q 045105 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 420 (601)
++++.|+++.|.+.+... .+..+|..+..+|...|+++.|...... ...+...+..++..|.+.|.+++|+.+
T Consensus 1230 tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876 3668888889999999999999988775 445666777999999999999999999
Q ss_pred HHHHHHCCCCccH-HhHHHHHHHHh--ccCchHHHHHHHHHHHhcCCCc------CchHHHHHHHHhhhcCChHHHHHHH
Q 045105 421 FRRILASGFRPDH-ISFLSALSACV--HAGSIKTGSEFFDLMAYYDVKP------SLKHYTCMVDLLSRAGELGEAYEFI 491 (601)
Q Consensus 421 ~~~m~~~~~~p~~-~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (601)
++..+.. .|.. ..|+-+...++ +.++..++.++|.. +-.+++ +...|.-++..|.+.|+++.|...+
T Consensus 1303 lE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1303 LEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9887753 4443 35544544444 44566666666642 223333 4667899999999999999998544
Q ss_pred HhC--------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 492 KKI--------------PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 492 ~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
-+. ....|+..|...+.-|...+ ..+..-+..... | ..-+...+..+.+.|++.-+..++
T Consensus 1379 ~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~--P~~lndLl~~l~--~--rlD~~R~V~l~~~~~~l~lik~yl 1452 (1630)
T 1xi4_A 1379 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLS--P--RLDHTRAVNYFSKVKQLPLVKPYL 1452 (1630)
T ss_pred HhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC--hHHHHHHHHHhh--h--cCChHHHHHHHHHcCChHHhHHHH
Confidence 332 11235555655666665433 122222222221 1 111233444455555555555555
Q ss_pred HHHhh
Q 045105 558 QKMKD 562 (601)
Q Consensus 558 ~~~~~ 562 (601)
+..+.
T Consensus 1453 ~~vq~ 1457 (1630)
T 1xi4_A 1453 RSVQN 1457 (1630)
T ss_pred HHHHH
Confidence 55443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=153.41 Aligned_cols=281 Identities=14% Similarity=0.046 Sum_probs=225.8
Q ss_pred CCCCCchhHHH-HHhhCCC--C-----CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC
Q 045105 3 GKCGSLDDAKK-VFKMMPE--R-----DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY 74 (601)
Q Consensus 3 ~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~ 74 (601)
.-.|++++|.+ .|++..+ | +...+..+...+.+.|++++|+..|+.+.+ ..+.+..+|..+..++...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcC
Confidence 34578999998 8887764 1 345688899999999999999999999998 566788899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH---------------HHHHH
Q 045105 75 DEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG---------------LVDVY 139 (601)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------l~~~~ 139 (601)
+++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998874 457788999999999999999999999999986532 2222221 23334
Q ss_pred HhcCCHHHHHHHHhhcC--CC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 140 RRCGDMLSALKIFSKFS--IK---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 140 ~~~~~~~~a~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
...|++++|...|+++. .| +..++..+...+.+.|++++|...|+++.... +.+..+|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999876 23 46788999999999999999999999998764 44567899999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC----------chhHHHHHHHHHHhcCCHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQS----------DTFVGGALVEMYCRYQDLVA 284 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~ 284 (601)
...|+++... .+.+...+..+..++...|++++|...++.+.+..... ...+|..+..+|...|+.++
T Consensus 271 ~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 271 VAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999998862 23456778888999999999999999999988753222 26789999999999999999
Q ss_pred HHHHhh
Q 045105 285 AQMAFD 290 (601)
Q Consensus 285 a~~~~~ 290 (601)
|..++.
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998887
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-16 Score=143.82 Aligned_cols=246 Identities=9% Similarity=-0.024 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc
Q 045105 268 VGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347 (601)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 347 (601)
....+..+|...|+++.|...++ .. -+|+..++..+...+...++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~----------~~-------------------------~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIK----------PS-------------------------SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSC----------TT-------------------------SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhc----------cc-------------------------CChhHHHHHHHHHHHcCCCc
Confidence 34456778888888888876555 11 13455667778888888889
Q ss_pred hhhHHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDS-DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
.+.|...++.+...+..| ++..+..+...+...|++++|...+++ ..+...+..++..|.+.|++++|...|+++.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999888876544 556666777899999999999999998 56778899999999999999999999999998
Q ss_pred CCCCccHHhH---HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHH
Q 045105 427 SGFRPDHISF---LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSV 501 (601)
Q Consensus 427 ~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~ 501 (601)
. .|+.... ..++..+...|++++|..+|+.+.+. .+.+...++.+..++.+.|++++|+..++++ ...| +..
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 6 4554311 22334445568999999999777766 4567788999999999999999999999987 4455 677
Q ss_pred HHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 502 MWGALLGGCVSHGNLEF-GQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
++..++..+...|+.++ +.+.++++.+.+|+++.+.. ...+.+.++++..-+
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 88889989999998865 67899999999998876543 455566666665443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-14 Score=146.53 Aligned_cols=403 Identities=10% Similarity=0.043 Sum_probs=237.1
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+..+|..++. +.+.|++++|..+|+.+.+ ..|.+...|..++..+.+.|++++|.++|++..+. .|+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 5668888888 4778999999999999998 56778889999999999999999999999999876 47877777776
Q ss_pred HHH-HhcCCcchHHH----HHHHHHHh-cCCC-chHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCc---h
Q 045105 102 PAC-ARLQKLSLGKE----FHGYITRN-GFMS-NPFVVNGLVDVYRR---------CGDMLSALKIFSKFSI-KNE---V 161 (601)
Q Consensus 102 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~---~ 161 (601)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34577777765 67766643 5443 45677777776654 6788889888887663 221 1
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHc--CC
Q 045105 162 SCNTIIVGY-------------CENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR--DG 226 (601)
Q Consensus 162 ~~~~li~~~-------------~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~ 226 (601)
.|....... .+.++++.|..++.++... ...... ..
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-----------------------------~~~l~~~~~~ 217 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV-----------------------------MKGLDRNAPS 217 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH-----------------------------HHHCCSSSCC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH-----------------------------HHHhcccccc
Confidence 222211110 0122333444433332100 001100 00
Q ss_pred CCCCh--------hhHHHHHHHhcc----cCCH----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH
Q 045105 227 IEPTS--------FTFGSVLIACAD----MNSL----RKGKEIHALAIALGLQSDTFVGGALVEMYCR-------YQDLV 283 (601)
Q Consensus 227 ~~p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~ 283 (601)
+.|+. ..|...+..... .++. +.+..+|+...... +.+..+|..+...+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 12221 122222211111 1121 24445555555442 3345555555555554 46654
Q ss_pred -------HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC-CHhHHHHHHHHhcCCCchhhHHHHH
Q 045105 284 -------AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATMERGKQVH 355 (601)
Q Consensus 284 -------~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 355 (601)
+|..+++ +..+ ...| +...+..+...+.+.|++++|..++
T Consensus 297 ~a~~~~~~A~~~~~----------~Al~----------------------~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 297 NAKLFSDEAANIYE----------RAIS----------------------TLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHH----------HHTT----------------------TTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhHHHHHHHH----------HHHH----------------------HhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6666666 2221 0112 2334555555556666666677666
Q ss_pred HHHHHhCCCCc--hhHHhHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHH-HHHHcCChhhHHHHHHHHHHCCC
Q 045105 356 AYAIRCGYDSD--VHIGTALVDMYAKCGSLKHARLAYKRIST--P-DLVSQNAMLT-AYAMHGHGKEGIAHFRRILASGF 429 (601)
Q Consensus 356 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~ 429 (601)
+.+.+.. |+ ...|..++..+.+.|++++|..+|++..+ | +...|..... .+...|+.++|..+|++.++..
T Consensus 345 ~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 345 NRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred HHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 6666632 32 23566666666677777777777776653 1 1122222111 1335778888888888777642
Q ss_pred CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC-CCcC--chHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 430 RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD-VKPS--LKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+-+...|..++..+.+.|+.++|..+|+...... ..|+ ...|...+......|+.+.+.++.+++
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2245677777777777888888888885555442 2232 336666677777778888887777665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=155.29 Aligned_cols=301 Identities=10% Similarity=-0.034 Sum_probs=189.8
Q ss_pred CChhHHHH-HHHHHHHcCCCCC--ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 045105 209 SLYDEAFS-MFRDLLMRDGIEP--TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAA 285 (601)
Q Consensus 209 ~~~~~a~~-~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (601)
|++++|++ .+++......-.| +...+..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5544332111111 22334445555555566666666665555543 33445566666666666777666
Q ss_pred HHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC
Q 045105 286 QMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDS 365 (601)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (601)
...|+ ...+. .+.+..++..+...+...|++++|...+..+.+....
T Consensus 118 ~~~~~----------~al~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 164 (368)
T 1fch_A 118 ISALR----------RCLEL----------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA- 164 (368)
T ss_dssp HHHHH----------HHHHH----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-
T ss_pred HHHHH----------HHHhc----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 66666 22211 0123344555555666666666666666666554321
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHh
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACV 444 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~ 444 (601)
+...+..+... .. ...+ ...+.. +..+...|++++|+..++++.+..... +..++..+...+.
T Consensus 165 ~~~~~~~~~~~-------~~-------~~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 165 YAHLVTPAEEG-------AG-------GAGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp TGGGCC------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-------hh-------hhcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 11111111000 00 0000 011112 223338899999999999998853111 4678888999999
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIA 522 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 522 (601)
..|++++|...++...... +.+...+..+...+.+.|++++|+..++++ ...| +...+..+...|...|++++|.+.
T Consensus 229 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999997666543 345678899999999999999999999887 3344 677899999999999999999999
Q ss_pred HHHHHhcCCCC-----------CchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 523 ADRLIELEPNN-----------TGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 523 ~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
++++.+..|++ +.++..++.+|...|++++|..++++.
T Consensus 308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999998877 789999999999999999999987643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-14 Score=140.93 Aligned_cols=353 Identities=12% Similarity=0.098 Sum_probs=281.1
Q ss_pred CchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCC
Q 045105 159 NEVSCNTIIVGYCE----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD----NSLYDEAFSMFRDLLMRDGIEPT 230 (601)
Q Consensus 159 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~ 230 (601)
+..++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|..+|++... .+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---C
Confidence 55566666666666 899999999999998764 45677788888888 8999999999999876 43 4
Q ss_pred hhhHHHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 231 SFTFGSVLIACAD----MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR----YQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 231 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
...+..+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|...|+ +.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~----------~a 177 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS----------KA 177 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH----------HH
Confidence 5556666666666 789999999999998876 56677778888887 789999998888 33
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC----CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS----LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYA 378 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (601)
.+. .+...+..+...+.. .++.++|...+....+.+ ++..+..+...|.
T Consensus 178 ~~~------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 178 AEQ------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHT------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHC------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 321 133444555555555 789999999999998875 4566677777777
Q ss_pred h----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHH----cCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc---
Q 045105 379 K----CGSLKHARLAYKRIS-TPDLVSQNAMLTAYAM----HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA--- 446 (601)
Q Consensus 379 ~----~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 446 (601)
. .+++++|..+|++.. ..+...+..+...|.. .++.++|+.+|++..+.| +...+..+...+...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 6 789999999999876 4566777788888888 899999999999998865 344566667777766
Q ss_pred --CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChh
Q 045105 447 --GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG---ELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLE 517 (601)
Q Consensus 447 --g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 517 (601)
+++++|...++...+.+ +...+..+...|...| +.++|++.|++.-...++..+..+...|.. .++++
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 89999999997777755 3456777888887766 789999999987434577888888888888 79999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCc
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFAY----AGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~~~ 566 (601)
+|.+.++++.+.. ++.++..++.+|.. .+++++|...+++..+.+..
T Consensus 385 ~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 385 QAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999999999864 68899999999998 89999999999999988843
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-18 Score=172.02 Aligned_cols=162 Identities=16% Similarity=0.215 Sum_probs=132.7
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSL--DNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
+||+||.+|++.|++++|.++|++|.+. .+..||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 7999999999999999999999887642 26789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCc-chHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHhcCC-
Q 045105 103 ACARLQKL-SLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-----NEVSCNTIIVGYCENGN- 175 (601)
Q Consensus 103 ~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~- 175 (601)
++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+..+ ...+...|.+.+.+.+.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~~~ 288 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRV 288 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCSCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCCCC
Confidence 99999985 789999999999999999999999998777765444444444444321 23455566666766552
Q ss_pred --------HHHHHHHHHHH
Q 045105 176 --------VAEARELFDQM 186 (601)
Q Consensus 176 --------~~~a~~~~~~m 186 (601)
.++-.++|++-
T Consensus 289 s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 289 SYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCCCSSCHHHHHHHHHHH
T ss_pred cCccccCCHHHHHHHHHHH
Confidence 35555555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-16 Score=150.04 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=214.7
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+...+..+...+.+.|++++|+..|+.+.+ ..+.+..+|..+..++...|++++|++.|++..+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345688899999999999999999999998 456788999999999999999999999999998863 44578899999
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCC---------chHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC---CchhHHHHH
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMS---------NPFVVNGLVDVYRRCGDMLSALKIFSKFS--IK---NEVSCNTII 167 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~~~li 167 (601)
..+...|++++|...++.+.+..... ...++..+...+...|++++|.+.|++.. .| +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999998864210 12233445788999999999999999886 23 567899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCH
Q 045105 168 VGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSL 247 (601)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 247 (601)
..+...|++++|.+.|++..... +.+..+|..+..++...|++++|...|++.... .+.+...+..+..++...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999998775 456778999999999999999999999998872 223467788889999999999
Q ss_pred HHHHHHHHHHHHcCCC-----------CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 248 RKGKEIHALAIALGLQ-----------SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 248 ~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
++|...++.+.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999998865321 136788999999999999999987776
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-14 Score=146.91 Aligned_cols=220 Identities=9% Similarity=-0.046 Sum_probs=122.2
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH 411 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 411 (601)
...+..+...+...|+++.|...+....+... -+..++..+...|...+....+ . ... .........
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~-----~-~~~------~~~~~~~~~ 313 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMN-----L-REN------GMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHH-----C-------------CHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhh-----H-HHH------HHHHHHHHH
Confidence 44556666777777777888877777776542 2344455554444321111100 0 000 000011112
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch--HHHHHHH-HhhhcCChHHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK--HYTCMVD-LLSRAGELGEAY 488 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~ 488 (601)
+..+.|...+++..+.. +.+..++..+...+...|++++|...|+...+....+... .+..+.. .+...|+.++|+
T Consensus 314 ~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34567888888877753 3334577888888999999999999997666654333221 2233332 234678999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 489 EFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 489 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
..+++. .+.|+...+. +..+.+.+++++..+.+|+++.++..++.+|...|++++|.+.+++..+.+...
T Consensus 393 ~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 998876 4566544332 223456677888889999999999999999999999999999999999888665
Q ss_pred CCCcceE
Q 045105 568 SPGCSWI 574 (601)
Q Consensus 568 ~~~~~~~ 574 (601)
+...+|+
T Consensus 464 p~a~~~~ 470 (472)
T 4g1t_A 464 PSASSWN 470 (472)
T ss_dssp -------
T ss_pred CcHhhcC
Confidence 5555553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=147.46 Aligned_cols=232 Identities=14% Similarity=0.052 Sum_probs=194.3
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++. +.+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 3467889999999999999999999999876 4567889999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHH-hH----------HHHHHHHhccCchHHHHHHHHHHHhcCCC-cCchHHHHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHI-SF----------LSALSACVHAGSIKTGSEFFDLMAYYDVK-PSLKHYTCMV 475 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 475 (601)
|...|++++|+..++++.+. .|+.. .+ ..+...+...|++++|...++.+...... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999885 44432 22 33477889999999999999766665422 2577899999
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH
Q 045105 476 DLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (601)
..|...|++++|++.++++ ...| +..+|..+...|...|++++|.+.++++.+..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 045105 554 ARTRQKMKDRRM 565 (601)
Q Consensus 554 ~~~l~~~~~~~~ 565 (601)
.+.++++.+..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999876553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-15 Score=141.60 Aligned_cols=262 Identities=9% Similarity=-0.026 Sum_probs=217.1
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+...+..+...+...|++++|+.+|+.+.+ ..+.+...|..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 345677788899999999999999999988 455688899999999999999999999999998863 44677888899
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH--------------HH-HHHhcCCHHHHHHHHhhcC---CCCchhH
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL--------------VD-VYRRCGDMLSALKIFSKFS---IKNEVSC 163 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~---~~~~~~~ 163 (601)
..+...|++++|...++.+.+... .+...+..+ .. .+...|++++|...+++.. ..+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 999999999999999999987642 223333333 22 3677889999999998876 3367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...|++.... .+.+...+..+...+..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998765 445678899999999999999999999998862 23356778888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 244 MNSLRKGKEIHALAIALGLQS-----------DTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.|+++.|.+.++.+....... +..++..+..++.+.|+.++|..+++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999998765332 57788999999999999999999888
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-17 Score=167.06 Aligned_cols=120 Identities=10% Similarity=0.083 Sum_probs=108.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 045105 160 EVSCNTIIVGYCENGNVAEARELFDQME---HLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236 (601)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 236 (601)
..+|+++|++|++.|++++|.++|++|. ..|+.||+.|||+||.+|++.|++++|.++|++|.. .|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 3479999999999999999999998875 458899999999999999999999999999999998 999999999999
Q ss_pred HHHHhcccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 045105 237 VLIACADMNSL-RKGKEIHALAIALGLQSDTFVGGALVEMYCRYQ 280 (601)
Q Consensus 237 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (601)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 99999999984 788999999999999999999998887666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-15 Score=136.72 Aligned_cols=220 Identities=10% Similarity=0.069 Sum_probs=180.7
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC----CC-ChhhHHHHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TP-DLVSQNAMLTAY 408 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~-~~~~~~~ll~~~ 408 (601)
....+.+++...|+++.|...++. .-+|+...+..+...+...|+.++|...++++. .| +...+..+...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 345567899999999999876644 245677888889999999999999999999863 24 455667777899
Q ss_pred HHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHH---HHHHHHhhhcCChH
Q 045105 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHY---TCMVDLLSRAGELG 485 (601)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~ 485 (601)
...|++++|+..+++ +.+...+..+...+.+.|++++|.+.++.+.+.. |+.... ..++..+...|+++
T Consensus 112 ~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHH
Confidence 999999999999987 4566788889999999999999999997777764 553211 22334455569999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH-HHHHHHHHhh
Q 045105 486 EAYEFIKKI-P-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD-LARTRQKMKD 562 (601)
Q Consensus 486 ~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~l~~~~~ 562 (601)
+|..+|+++ . ...+...|+.+...+...|++++|++.++++.+.+|+++.++..++.++...|+.++ +.++++++.+
T Consensus 184 eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999988 2 234788899999999999999999999999999999999999999999999999976 5788898887
Q ss_pred cCC
Q 045105 563 RRM 565 (601)
Q Consensus 563 ~~~ 565 (601)
..+
T Consensus 264 ~~P 266 (291)
T 3mkr_A 264 AHR 266 (291)
T ss_dssp HCT
T ss_pred hCC
Confidence 763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=143.39 Aligned_cols=262 Identities=9% Similarity=-0.057 Sum_probs=212.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC
Q 045105 265 DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS 344 (601)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 344 (601)
+...+..+...+...|++++|...|+ .+.+. .+.+...+..+...+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~----------~~~~~----------------------~~~~~~~~~~l~~~~~~ 67 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFE----------AVCQA----------------------APEREEAWRSLGLTQAE 67 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHH----------HHHHH----------------------CTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHH----------HHHHh----------------------CCCCHHHHHHHHHHHHH
Confidence 33455677788899999999999998 44321 12245667788889999
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHH--------------HH-
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAM--------------LT- 406 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l--------------l~- 406 (601)
.|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.. .+...+..+ ..
T Consensus 68 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 68 NEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred cCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 999999999999998875 34677888899999999999999999988762 222333333 22
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHH
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 486 (601)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...... +.+...+..+...+...|++++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 3677899999999999999864 4467788999999999999999999997766553 3456788999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCHHH
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN------------NTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~ 552 (601)
|.+.++++ ...| +...+..+...+...|++++|.+.++++.+..|+ ++.++..++.++...|++++
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99999987 3334 6788999999999999999999999999999998 67899999999999999999
Q ss_pred HHHHHHHHh
Q 045105 553 LARTRQKMK 561 (601)
Q Consensus 553 A~~~l~~~~ 561 (601)
|..++++..
T Consensus 305 A~~~~~~~l 313 (327)
T 3cv0_A 305 VELTYAQNV 313 (327)
T ss_dssp HHHHTTCCS
T ss_pred HHHHHHHHH
Confidence 999987543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-14 Score=140.09 Aligned_cols=148 Identities=11% Similarity=-0.027 Sum_probs=77.3
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHHHHH-HHhccCchHHHHHHH
Q 045105 383 LKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLSALS-ACVHAGSIKTGSEFF 456 (601)
Q Consensus 383 ~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~ 456 (601)
.+.|...++... +.+...+..+...|...|++++|+..|++.++....|... .+..+.. .....|++++|+..|
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345555555443 3455677888888899999999999999988864333321 2222222 234678899999988
Q ss_pred HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 457 DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
....+ +.|+....... ...+.+++++. ...| +..+|..+...|...|++++|++.++++++.+|.+|
T Consensus 396 ~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 396 IEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 66554 34443322222 22333344333 2234 677899999999999999999999999999998877
Q ss_pred chHHHHH
Q 045105 535 GNYVMLA 541 (601)
Q Consensus 535 ~~~~~l~ 541 (601)
.+...++
T Consensus 465 ~a~~~~G 471 (472)
T 4g1t_A 465 SASSWNG 471 (472)
T ss_dssp -------
T ss_pred cHhhcCC
Confidence 7665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=129.45 Aligned_cols=195 Identities=13% Similarity=0.046 Sum_probs=154.4
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHH
Q 045105 364 DSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL 440 (601)
Q Consensus 364 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (601)
++++..+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++.++.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4566777888888999999999999998765 3556788889999999999999999999999863 33456888888
Q ss_pred HHHhcc-----------CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 045105 441 SACVHA-----------GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLG 508 (601)
Q Consensus 441 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 508 (601)
.++... |++++|...++...+.. +-+...+..+..+|...|++++|+..|+++ ....+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 899999 99999999997766643 334668888999999999999999999887 22277888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
.+...|++++|...++++.+.+|+++..+..++.++...|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=129.89 Aligned_cols=221 Identities=11% Similarity=0.031 Sum_probs=191.5
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--C----C----hhhH
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--P----D----LVSQ 401 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~----~~~~ 401 (601)
...+..+...+...|++++|...+..+.+.. .+...+..+...+...|++++|...+++... | + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3457778888999999999999999999988 7888999999999999999999999998762 1 2 5788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
..+...|...|++++|+..|++..+. .|+. ..+...|++++|...++...... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999984 5553 34567788999999997766543 33466788899999999
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|++++|+..++++ ...| +..++..+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|.+.+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999987 2234 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q 045105 560 MKDRR 564 (601)
Q Consensus 560 ~~~~~ 564 (601)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-13 Score=122.61 Aligned_cols=198 Identities=10% Similarity=-0.005 Sum_probs=151.8
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3445566666777777777777777654 3455677777888888888888888888887753 33566777788888
Q ss_pred hccCchHHHHHHHHHHHhcCCCc-CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
...|++++|..+++.+...+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888886655533334 3456777788888888888888888876 2233 5677888888888899999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+.++++.+..|+++..+..++.++...|++++|.+.++++.+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999998888888888888899999999999999888877653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-12 Score=117.43 Aligned_cols=198 Identities=11% Similarity=0.018 Sum_probs=153.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (601)
++..+..+...+...|++++|...|+.+. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34555666677777777777777777654 3445677778888888888888888888888753 3456677888888
Q ss_pred Hhcc-CchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 045105 443 CVHA-GSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 443 ~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 518 (601)
+... |++++|...++.+.+.+..|+ ...+..+..++...|++++|+..++++ ...| +...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 899999988866665323333 457777888888899999998888876 2234 57778888888889999999
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 519 GQIAADRLIELEP-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 519 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
|.+.++++.+..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999988 888888888888889999999999988887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-12 Score=117.58 Aligned_cols=235 Identities=9% Similarity=-0.061 Sum_probs=186.2
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC--HhhHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN--ARTLSSV 100 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l 100 (601)
...+......+...|++++|+..|+...+ ..+.+...|..+..++...|++++|++.+++..+.+..|+ ..+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34566677889999999999999999988 4556677899999999999999999999999988432222 2247888
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--K-NEVSCNTIIVGYCENGNVA 177 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 177 (601)
...+...|++++|...++...+.. +.+..++..+..++...|++++|...|++... | +...+..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875 45667899999999999999999999998874 2 5556777773444556999
Q ss_pred HHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCCCh------hhHHHHHHHhcccCCHH
Q 045105 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSL---YDEAFSMFRDLLMRDGIEPTS------FTFGSVLIACADMNSLR 248 (601)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~ 248 (601)
+|.+.|++..... +.+...+..+...+...|+ +++|...+++......-.|+. ..|..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998764 3345667777888888888 888999998887643333442 45666777788889999
Q ss_pred HHHHHHHHHHHcC
Q 045105 249 KGKEIHALAIALG 261 (601)
Q Consensus 249 ~a~~~~~~~~~~~ 261 (601)
.|.+.++.+.+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999998888765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=122.97 Aligned_cols=196 Identities=11% Similarity=0.110 Sum_probs=116.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3344445555555566666655555543 2344556666666667777777777777766642 33455666666677
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...|++++|...++...+.. +.+...+..+...+.+.|++++|+..++++ ... .+...+..+...+...|++++|.+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777775544433 234556666667777777777777777665 222 345666667777777777777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++++.+..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777777777777777777777777777777776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-12 Score=117.49 Aligned_cols=224 Identities=13% Similarity=-0.022 Sum_probs=192.3
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAK----CGSLKHARLAYKRIS-TPDLVSQNAML 405 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~ll 405 (601)
+...+..+...+...|++++|...+....+. .+...+..+...|.. .+++++|...|++.. ..+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556677788888999999999999999883 355677788888999 999999999999876 34777888899
Q ss_pred HHHHH----cCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc----cCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 406 TAYAM----HGHGKEGIAHFRRILASGFRPDHISFLSALSACVH----AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 406 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 99999 999999999999999875 66778888888888 999999999997777765 45677788888
Q ss_pred hhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH---
Q 045105 478 LSR----AGELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY--- 546 (601)
Q Consensus 478 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 546 (601)
|.. .+++++|++.+++.-...+...+..+...|.. .+++++|.+.++++.+..| +..+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 888 99999999999987323456778888888988 9999999999999999865 7789999999999
Q ss_pred -cCCHHHHHHHHHHHhhcCC
Q 045105 547 -AGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 547 -~g~~~~A~~~l~~~~~~~~ 565 (601)
.|++++|.+.+++..+.|.
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988874
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-12 Score=126.28 Aligned_cols=257 Identities=12% Similarity=0.019 Sum_probs=116.7
Q ss_pred CCCCchhHHHHHhhCCC-CCccchHHHHHHHHhcCCh---HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC-----C
Q 045105 4 KCGSLDDAKKVFKMMPE-RDCVSWNSVVTACAANGLV---LEALECLERMSSLDNETPNLVSWSAVIGGFTQNG-----Y 74 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-----~ 74 (601)
+.|++++|.+.|+++.+ .++.++..|...|...|+. ++|+..|+...+ . +...+..|...+...+ +
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~---~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--T---SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--C---CHHHHHHHHHHHHhCCCCCCcC
Confidence 34667777777776654 3444555555556556666 677777766553 2 4455555555444443 5
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----HHHHHH
Q 045105 75 DEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD----MLSALK 150 (601)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----~~~a~~ 150 (601)
+++|.+.|++..+.|. |+ .+..|...|...+....+...++.+.+.....+......+...|...+. .+.+..
T Consensus 90 ~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 6677777777766542 22 4555555555544433333333333222111233444555555555553 334444
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhC----CChhHHHHHHHHHHH
Q 045105 151 IFSKFSIKNEVSCNTIIVGYCENG---NVAEARELFDQMEHLGVQRGIISWNSMISGYVDN----SLYDEAFSMFRDLLM 223 (601)
Q Consensus 151 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~ 223 (601)
+++.....+..++..+...|...| +.++|++.|+.....| .++...+..+...|... +++++|+.+|++..
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 444444445556666666666666 6666666666666655 33333334444444333 46666666666543
Q ss_pred cCCCCCChhhHHHHHHH-h--cccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 045105 224 RDGIEPTSFTFGSVLIA-C--ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYC 277 (601)
Q Consensus 224 ~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (601)
. -+...+..+-.. + ...++.++|.+.|+...+.| +...+..|..+|.
T Consensus 245 -~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 245 -P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp -G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred -C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 1 122222222222 2 33556666666666555544 3333444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=129.29 Aligned_cols=209 Identities=9% Similarity=-0.034 Sum_probs=133.6
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhc----CChHHHHHHHhcCCCCChhhHHHHHHH-H--HHcCChhhHHH
Q 045105 347 TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKC----GSLKHARLAYKRISTPDLVSQNAMLTA-Y--AMHGHGKEGIA 419 (601)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~ 419 (601)
+.++|...+....+.|.. +...+..+...|... +++++|...|++..+.+...+..+... | ...+++++|+.
T Consensus 194 ~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 455555555555555432 333223444455443 577777777776664455566666665 3 45788899999
Q ss_pred HHHHHHHCCCCccHHhHHHHHHHHhccC-----chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCChHHHHHH
Q 045105 420 HFRRILASGFRPDHISFLSALSACVHAG-----SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGELGEAYEF 490 (601)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 490 (601)
+|++..+.| +...+..+...|. .| ++++|..+|+... +-+...+..|...|.. ..+.++|.+.
T Consensus 273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 999988876 4555555666665 44 8889999986644 3345566667777765 4489999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 491 IKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
|++.-..-+......|...|.. ..|.++|..+++++.+..+.+.......+......++..+|.++.+++++..
T Consensus 345 ~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 345 LLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 9887323344555556666653 4589999999999998865333322222222334567888888888887553
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-13 Score=122.12 Aligned_cols=246 Identities=11% Similarity=-0.001 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc
Q 045105 268 VGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347 (601)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 347 (601)
.+......+...|++++|...|+ ...+. . +.+...+..+..++...|+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~----------~~l~~--~--------------------p~~~~~~~~l~~~~~~~~~ 52 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFN----------KLEAK--K--------------------YNSPYIYNRRAVCYYELAK 52 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHH----------HHHHT--T--------------------CCCSTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH----------HHHHh--C--------------------CCcHHHHHHHHHHHHHHhh
Confidence 34455666777788888877777 33311 0 1122345566667777777
Q ss_pred hhhHHHHHHHHHHhCCCCc--hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDSD--VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFR 422 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (601)
+++|...+....+.+..++ ...+..+...+...|++++|...|++.. +.+...+..+...|...|++++|+..++
T Consensus 53 ~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 53 YDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7777777777776332121 2235666777777777777777777655 3445567777777777777777777777
Q ss_pred HHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCC---hHHHHHHHHhC----C
Q 045105 423 RILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE---LGEAYEFIKKI----P 495 (601)
Q Consensus 423 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~ 495 (601)
+..+.. +.+...+..+...+...+++++|...++...+.. +.+...+..+..++...|+ +++|...++++ .
T Consensus 133 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 133 KQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 776641 2233455555523333457777777775554432 2234555556666666666 66666666554 1
Q ss_pred CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 496 MAPDS------VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 496 ~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
..|+. .+|..+...|...|++++|.+.++++.+++|+++.+...+..+....
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 12331 35555666667777777777777777777777776666666555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-12 Score=120.33 Aligned_cols=235 Identities=11% Similarity=0.009 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCC
Q 045105 266 TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSL 345 (601)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 345 (601)
...+..+...+...|++++|...|+ ...+. . .+...+..+..++...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~----------~a~~~---------------------~--~~~~~~~~~~~~~~~~ 51 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYN----------KAWEL---------------------H--KDITYLNNRAAAEYEK 51 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH----------HHHHH---------------------S--CCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH----------HHHHh---------------------h--ccHHHHHHHHHHHHHc
Confidence 3567788889999999999999998 44321 1 4456778888999999
Q ss_pred CchhhHHHHHHHHHHhCCC--Cc----hhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChhhH
Q 045105 346 ATMERGKQVHAYAIRCGYD--SD----VHIGTALVDMYAKCGSLKHARLAYKRIST--PDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a 417 (601)
|++++|...+....+.... ++ ..++..+...+...|++++|...|+++.. |+ ...+...|++++|
T Consensus 52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKE 124 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHH
Confidence 9999999999998875322 12 57888899999999999999999998773 44 2456777889999
Q ss_pred HHHHHHHHHCCCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 045105 418 IAHFRRILASGFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P 495 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (601)
...++++... .|+ ...+..+...+...|++++|...++...... +.+..++..+..+|.+.|++++|++.++++ .
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999985 444 4578888899999999999999997766654 345778899999999999999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 045105 496 MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELE------PNNTGNYVMLANL 543 (601)
Q Consensus 496 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 543 (601)
..| +...|..+...+...|++++|.+.++++.+.. |++..++..+..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 344 57788999999999999999999999999998 7666666665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=124.63 Aligned_cols=229 Identities=9% Similarity=0.014 Sum_probs=192.3
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC-hHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS-LKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
...|..+...+...|++++|...++.+++... -+...|+.+...+...|+ +++|+..|+++. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34577777888899999999999999998763 367788888999999997 999999999887 4567889999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh-cCChHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR-AGELGE 486 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 486 (601)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++.+.+.. +-+...|+.+..+|.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999963 3456789999999999999999999997777654 3456789999999998 666578
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC--------C
Q 045105 487 A-----YEFIKKI-PMAP-DSVMWGALLGGCVSHG--NLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG--------R 549 (601)
Q Consensus 487 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 549 (601)
| ++.++++ ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4677665 4456 5778888888888888 689999999998 889999999999999999975 3
Q ss_pred -HHHHHHHHHHH-hhcC
Q 045105 550 -WSDLARTRQKM-KDRR 564 (601)
Q Consensus 550 -~~~A~~~l~~~-~~~~ 564 (601)
+++|.++++++ .+.+
T Consensus 333 ~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 333 ILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 59999999998 5554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-13 Score=120.96 Aligned_cols=216 Identities=14% Similarity=0.082 Sum_probs=162.7
Q ss_pred CCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 045105 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLT 406 (601)
Q Consensus 330 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~ 406 (601)
.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 445667778888999999999999999988754 3467788889999999999999999999876 456778889999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHH
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 486 (601)
.|...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999864 4466788889999999999999999997666543 3456788889999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
|++.++++ ...| +..++..+...|...|++++|.+.++++.+..|+++.++..+..+....|
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999887 2233 57788999999999999999999999999999998888887776654443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-12 Score=114.89 Aligned_cols=195 Identities=12% Similarity=-0.069 Sum_probs=109.9
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++...+..+...+.+.|++++|+..|+...+ ..|.+...|..+..++.+.|++++|+..+++..+.. +-+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4556677778888888888888888888877 456677888888888888888888888888887753 3345566677
Q ss_pred HHHHHhc-----------CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHH
Q 045105 101 LPACARL-----------QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTII 167 (601)
Q Consensus 101 l~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li 167 (601)
...+... |++++|...++..++.. +.+...+..+..++...|++++|+..|++... .+...+..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 7777766 66666666666665543 22344455555555555555555555544321 2333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHH
Q 045105 168 VGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRD 220 (601)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (601)
..+...|++++|...|++..... +.+...+..+...+...|++++|+..|++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444455555444444444332 22333344444444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-12 Score=116.29 Aligned_cols=195 Identities=14% Similarity=-0.043 Sum_probs=93.7
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
..|..+...+...|++++|+..|+.+.+ ..+.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555555556666666666665555 233445555555556666666666666666555442 2234445555555
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMS-NPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 179 (601)
+...|++++|...++.+.+.+..| +...+..+..++...|++++|...|++.. ..+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554421222 23344444444555555555555544433 11233344444444444444444
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
...++++.... +.+...+..+...+...|++++|.+.++++.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444322 1223333444444444444444444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=118.80 Aligned_cols=219 Identities=11% Similarity=-0.094 Sum_probs=174.4
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
+..++..+...+...|++++|...+..+.+... .+...+..+...|...|++++|...|+++. +.+...+..+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence 355678888999999999999999999998753 367888899999999999999999999876 3467889999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
|...|++++|...++++.+. .|+.......+..+...|++++|...+....... +++...+ .++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHH
Confidence 99999999999999999985 4555544555556677899999999995555442 3444444 467777888888999
Q ss_pred HHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 488 YEFIKKI-PMAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 488 ~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
++.+++. ...|+ ...+..+...|...|++++|...++++.+..|++...+ +.++...|++++|.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9999877 32332 57788899999999999999999999999998765444 66788889999998876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=110.22 Aligned_cols=167 Identities=12% Similarity=0.081 Sum_probs=141.7
Q ss_pred ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHH
Q 045105 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (601)
+...|..+...|...|++++|+..|++.++.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45678889999999999999999999998853 3345688888899999999999999996655543 334557777788
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
.+...+++++|.+.+.+. ...| +...+..+...+...|++++|++.++++.+.+|+++.++..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999999877 2344 67788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 045105 555 RTRQKMKDRRM 565 (601)
Q Consensus 555 ~~l~~~~~~~~ 565 (601)
+.+++..+..+
T Consensus 162 ~~~~~al~~~p 172 (184)
T 3vtx_A 162 KYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHTTH
T ss_pred HHHHHHHhCCc
Confidence 99999887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=8.4e-13 Score=122.31 Aligned_cols=213 Identities=9% Similarity=-0.118 Sum_probs=109.0
Q ss_pred CCCCchhHHHHHhhCCCC-------CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChH
Q 045105 4 KCGSLDDAKKVFKMMPER-------DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDE 76 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~ 76 (601)
..|++++|++.|+++.+. +..+|..+...+...|++++|+..|+.+.+ ..+.+..+|..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHccCHH
Confidence 345666666666665541 233555566666666666666666666665 23445566666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
+|.+.|++..+.. +.+..++..+...+...|++++|...++.+.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666665542 2234555556666666666666666666665543 222222233333344455555555554332
Q ss_pred --CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 157 --IK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQR---GIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 157 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
.| +...+ .++..+...++.++|.+.+.......... +..++..+...+...|++++|...|++..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 22222 24444444444555555554443321100 12344444455555555555555555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-12 Score=111.40 Aligned_cols=199 Identities=7% Similarity=-0.110 Sum_probs=137.0
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+...|..+...+...|++++|+..|+.+.+ ..+.+...|..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK--SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 345677777888888888888888888877 345567788888888888888888888888887653 34566777777
Q ss_pred HHHHhc-CCcchHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCH
Q 045105 102 PACARL-QKLSLGKEFHGYITRNGFMS-NPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 102 ~~~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 176 (601)
..+... |++++|...++.+.+.+..| +...+..+..++...|++++|...|++.. ..+...+..+...+.+.|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 778888 88888888888877732222 24566677777777777777777776654 22455566666667777777
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 223 (601)
++|.+.+++........+...+..+...+...|+.+.+..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777776665543113444555555666666666666666666553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-09 Score=112.36 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=149.6
Q ss_pred CHhHHHHHHHHhcCCCchhhHH-HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-------------C
Q 045105 331 DIYTVGIILSACSSLATMERGK-QVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-------------P 396 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~ 396 (601)
....|.....-+...|+.+.|. .+++..... ++.+...+...+....+.|+++.|..+|+++.. |
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4556666666667778888896 999998864 345667777888888899999999999987762 3
Q ss_pred C------------hhhHHHHHHHHHHcCChhhHHHHHHHHHHC-CCCccHHhHHHHHHHHhc-cCchHHHHHHHHHHHhc
Q 045105 397 D------------LVSQNAMLTAYAMHGHGKEGIAHFRRILAS-GFRPDHISFLSALSACVH-AGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 397 ~------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 462 (601)
+ ...|...+....+.|..+.|..+|.+.++. + .+....|...+..-.+ .++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235777777778889999999999999886 2 1122233322222223 35589999999655554
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
++-+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 3445667778888888999999999999987 2233 346788888888899999999999999999999654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=130.74 Aligned_cols=208 Identities=9% Similarity=-0.005 Sum_probs=175.9
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh-HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSL-KHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRR 423 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (601)
++.+...+...... .+.+...+..+...+...|++ ++|...|++.. +.+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555544432 234677888888999999999 99999998876 34577899999999999999999999999
Q ss_pred HHHCCCCccHHhHHHHHHHHhcc---------CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc--------CChHH
Q 045105 424 ILASGFRPDHISFLSALSACVHA---------GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA--------GELGE 486 (601)
Q Consensus 424 m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 486 (601)
..+. .|+...+..+...+... |++++|...++...+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9985 67778888899999999 99999999997766653 34567888999999988 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 487 AYEFIKKI-PMAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 487 A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|++.|+++ ...| +...|..+...|...|++++|.+.++++.+++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999987 3345 6788999999999999999999999999999999999999999999999999999975443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-09 Score=112.36 Aligned_cols=452 Identities=9% Similarity=-0.006 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---HHHHHHHH
Q 045105 76 EEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD---MLSALKIF 152 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 152 (601)
.+.+..|++-...+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.++ .+.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444444444443 457777777777777777777777888877766 45566677777777667777 77777777
Q ss_pred hhcC--C---CCchhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-cCC-CCC-eeehHHHHHHHHh---------
Q 045105 153 SKFS--I---KNEVSCNTIIVGYCENGNV--------AEARELFDQMEH-LGV-QRG-IISWNSMISGYVD--------- 207 (601)
Q Consensus 153 ~~~~--~---~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~~-~~~~~~li~~~~~--------- 207 (601)
++.. . |++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 7665 2 5555666665555544443 223355655443 344 332 2455555544332
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 045105 208 NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQM 287 (601)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (601)
.++++.+..+|+..+. + |... +..+ ..-|....+. + +..+...++.- ...+++.|..
T Consensus 207 q~~~~~~R~iy~raL~---i-P~~~-~~~~-------------w~~Y~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~ 263 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLC---Q-PMDC-LESM-------------WQRYTQWEQD-V--NQLTARRHIGE--LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHTT---S-CCSS-HHHH-------------HHHHHHHHHH-H--CTTTHHHHHHH--HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh---C-ccHH-HHHH-------------HHHHHHHHHh-c--CcchHHHHHHH--hhHHHHHHHH
Confidence 2234455555555442 1 2111 0000 0011111100 0 00000011110 1123334444
Q ss_pred HhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC----C---HhHHHHHHHHhcCCC-------chhhHHH
Q 045105 288 AFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP----D---IYTVGIILSACSSLA-------TMERGKQ 353 (601)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p----~---~~~~~~li~~~~~~~-------~~~~a~~ 353 (601)
.+..++.... .+.+. ++....... ..++++ + ...|...+.---..+ ..+.+..
T Consensus 264 ~~~e~~~~~~---~l~r~-~p~~~~~~~---------~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~ 330 (679)
T 4e6h_A 264 LYQDWLNITK---GLKRN-LPITLNQAT---------ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTY 330 (679)
T ss_dssp HHHHHHHHTT---TCCCC-CCSSSTTCC---------TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH---hHhhc-cccccccch---------hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence 4443322211 11111 111000000 000000 0 011222222111111 1234556
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH-HHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC
Q 045105 354 VHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR-LAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF 429 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 429 (601)
+|+...... +....+|...+..+...|+.++|. .+|++.. +.+...|-..+...-+.|++++|..+|+++++...
T Consensus 331 ~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 331 VYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 677776653 447788888888888899999996 9998876 34555677788888899999999999999987410
Q ss_pred ---------Ccc------------HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc-CChHHH
Q 045105 430 ---------RPD------------HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA-GELGEA 487 (601)
Q Consensus 430 ---------~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A 487 (601)
.|+ ...|...+....+.|..+.|..+|....+.........|...+..-.+. ++.+.|
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence 132 2367777888888899999999996655541122334443333333344 458999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 488 YEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN---NTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 488 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.++|+.. ..-| +...|...+......|+.+.|..+++++.+..|+ ....+..++..-.+.|+.+.+.++.+++.+
T Consensus 490 r~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 490 CKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999877 2223 5667778888888899999999999999999873 345777788888889999999999999987
Q ss_pred cCCc
Q 045105 563 RRMH 566 (601)
Q Consensus 563 ~~~~ 566 (601)
.-+.
T Consensus 570 ~~P~ 573 (679)
T 4e6h_A 570 KFPE 573 (679)
T ss_dssp HSTT
T ss_pred hCCC
Confidence 7653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-11 Score=114.67 Aligned_cols=246 Identities=13% Similarity=0.029 Sum_probs=197.3
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC-hHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY-DEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
..+|+.+...+.+.|++++|+..|+.+.+ ..+-+...|+.+..++...|+ +++|+..|++..+.. +-+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34688888899999999999999999998 566788999999999999997 999999999999863 34667899999
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHh-cCCHH
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCE-NGNVA 177 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~-~g~~~ 177 (601)
.++...|++++|...|+.+++.. +-+...|..+..++.+.|++++|+..|++.. ..+...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999875 5577899999999999999999999999887 3367789999999999 66657
Q ss_pred HH-----HHHHHHHHhcCCCCCeeehHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccC-----
Q 045105 178 EA-----RELFDQMEHLGVQRGIISWNSMISGYVDNS--LYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMN----- 245 (601)
Q Consensus 178 ~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----- 245 (601)
+| ++.|++..... +-+...|+.+...+...| ++++|++.+.++ . ..+.+...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 58888887764 345678888888888888 689999999886 3 23345566777777777764
Q ss_pred ----CHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHH
Q 045105 246 ----SLRKGKEIHALA-IALGLQSDTFVGGALVEMYC 277 (601)
Q Consensus 246 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~ 277 (601)
.+++|.++++.+ .+.. +.....|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258899999888 4432 334455665555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-10 Score=106.77 Aligned_cols=223 Identities=10% Similarity=-0.020 Sum_probs=177.7
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCCCHhhH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ----NGYDEEAIGMLFRMQAEGLEPNARTL 97 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 97 (601)
++.++..+...+...|++++|+..|+...+ +.+..++..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456777788888899999999999998877 2355778888888888 999999999999988875 66778
Q ss_pred HHHHHHHHh----cCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CchhHHHHHH
Q 045105 98 SSVLPACAR----LQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR----CGDMLSALKIFSKFSIK-NEVSCNTIIV 168 (601)
Q Consensus 98 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~ 168 (601)
..+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++.... +..++..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 888888888 899999999999988875 66788888888888 88999999888876643 5566777777
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 045105 169 GYCE----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD----NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240 (601)
Q Consensus 169 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 240 (601)
.+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++... .+ | ...+..+...
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~--~-~~a~~~l~~~ 227 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE--N-GGGCFNLGAM 227 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT--C-HHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-CC--C-HHHHHHHHHH
Confidence 7877 888999999888887764 34566777788888 8888999998888776 32 2 5556666666
Q ss_pred hcc----cCCHHHHHHHHHHHHHcC
Q 045105 241 CAD----MNSLRKGKEIHALAIALG 261 (601)
Q Consensus 241 ~~~----~~~~~~a~~~~~~~~~~~ 261 (601)
+.. .++.++|.+.++...+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666 788888888888887765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-12 Score=122.75 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCC-cC----chHHHHHHHHhhhcCC
Q 045105 414 GKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYTCMVDLLSRAGE 483 (601)
Q Consensus 414 ~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 483 (601)
+++|+..+++..+. +-.|. ..++..+...+...|++++|...++........ ++ ...+..+..+|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 56666665554331 11122 235666677777778888887777444332111 11 2266777788888888
Q ss_pred hHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCC
Q 045105 484 LGEAYEFIKKIP-M---AP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNYVMLANLFAYAGR 549 (601)
Q Consensus 484 ~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~ 549 (601)
+++|...+++.- . .. ...++..+...|...|++++|.+.++++.+..+.. ..++..++.+|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 888888877651 1 11 24567778888888999999999999888874432 3478889999999999
Q ss_pred HHHHHHHHHHHhhc
Q 045105 550 WSDLARTRQKMKDR 563 (601)
Q Consensus 550 ~~~A~~~l~~~~~~ 563 (601)
+++|.+.+++..+.
T Consensus 359 ~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 359 HERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-11 Score=118.91 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=116.6
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHh----CCC-CchhHHhHHHHHHHhcCC--------------------hHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRC----GYD-SDVHIGTALVDMYAKCGS--------------------LKHARL 388 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~ 388 (601)
++..+...+...|+++.|...+....+. +.. ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3455555666666666666666655432 111 113356666667777777 666666
Q ss_pred HHhcCCC-----C----ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-Ccc----HHhHHHHHHHHhccCchHHHHH
Q 045105 389 AYKRIST-----P----DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RPD----HISFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 389 ~~~~~~~-----~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~ 454 (601)
.+++... + ....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6654431 1 123455566666667777777777666654210 111 1255556666666677777766
Q ss_pred HHHHHHhcC----CCcC-chHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 045105 455 FFDLMAYYD----VKPS-LKHYTCMVDLLSRAGELGEAYEFIKKIP----MAPD----SVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 455 ~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
.++...... ..+. ..++..+...|...|++++|.+.+++.- ..++ ..++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 664433211 1110 3345556666666666666666665541 0111 3345555666666666666666
Q ss_pred HHHHHHhcCCCCC------chHHHHHHHHHHcCCHH
Q 045105 522 AADRLIELEPNNT------GNYVMLANLFAYAGRWS 551 (601)
Q Consensus 522 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~ 551 (601)
.++++.++.+... .++..++.++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 6666666665442 23344444444444444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=116.38 Aligned_cols=151 Identities=13% Similarity=0.037 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-CcC----chHHHHHHHHhhhcCC
Q 045105 414 GKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDV-KPS----LKHYTCMVDLLSRAGE 483 (601)
Q Consensus 414 ~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 483 (601)
+++|...+++.... +..|. ...+..+...+...|++++|...++...+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 66666666554331 11121 23566677777888888888888754433211 111 2366777788888899
Q ss_pred hHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCC
Q 045105 484 LGEAYEFIKKIP----MAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNYVMLANLFAYAGR 549 (601)
Q Consensus 484 ~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~ 549 (601)
+++|.+.+++.- ..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 988888887651 1111 4567778888899999999999999998875432 3478889999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 045105 550 WSDLARTRQKMKDRR 564 (601)
Q Consensus 550 ~~~A~~~l~~~~~~~ 564 (601)
+++|.+.+++..+..
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-12 Score=123.78 Aligned_cols=297 Identities=11% Similarity=0.049 Sum_probs=187.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEHLGVQRG----IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 237 (601)
.+......+...|++++|...|++....+. .+ ..+|..+...+...|++++|...+++.....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 77 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 77 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH------------
Confidence 344455555666666666666666655421 11 1344555555556666666666655543210
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 238 LIACADMNSLRKGKEIHALAIALGLQ-SDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
...+.. ....++..+..+|...|++++|...++.......-. . +
T Consensus 78 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~------~------ 122 (406)
T 3sf4_A 78 --------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL---N------D------ 122 (406)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T------C------
T ss_pred --------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---c------c------
Confidence 000111 123455667777888888888887777322111100 0 0
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc--------------------hhhHHHHHHHHHHh----CCC-CchhHHh
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLAT--------------------MERGKQVHAYAIRC----GYD-SDVHIGT 371 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~ 371 (601)
......++..+...+...|+ ++.|...+....+. +.. ....++.
T Consensus 123 -----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 191 (406)
T 3sf4_A 123 -----------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFG 191 (406)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 00113356677777888888 99999998876643 211 1245677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHH
Q 045105 372 ALVDMYAKCGSLKHARLAYKRIST-----PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFL 437 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 437 (601)
.+...|...|++++|...+++..+ ++ ...+..+...|...|++++|...+++..+. +..+. ..++.
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 888899999999999999988762 22 237888889999999999999999998753 11111 34778
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhcCCC-cC----chHHHHHHHHhhhcCChHHHHHHHHhC-------CCCC-CHHHHH
Q 045105 438 SALSACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYTCMVDLLSRAGELGEAYEFIKKI-------PMAP-DSVMWG 504 (601)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~ 504 (601)
.+...+...|++++|...++........ .+ ..++..+..+|...|++++|.+.+++. +..+ ...++.
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 351 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARL 351 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 8889999999999999999655442111 11 457778889999999999999998876 1111 233445
Q ss_pred HHHHHHHhcCChh
Q 045105 505 ALLGGCVSHGNLE 517 (601)
Q Consensus 505 ~l~~~~~~~g~~~ 517 (601)
.+...+...|+..
T Consensus 352 ~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 352 NLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHhhHhH
Confidence 5555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-11 Score=105.22 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=138.6
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (601)
++.+|..+...|.+.|++++|...|++.. +.+...+..+..+|.+.|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678888888888999999999988776 4566788889999999999999999999998863 3445677777788
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
+...++++.+...+....... +.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...|...|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999996655543 345678888999999999999999999887 3445 6778999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 045105 521 IAADRLIELEPNN 533 (601)
Q Consensus 521 ~~~~~~~~~~p~~ 533 (601)
+.++++++.+|++
T Consensus 162 ~~~~~al~~~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHhCCccC
Confidence 9999999999864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=120.98 Aligned_cols=266 Identities=10% Similarity=0.008 Sum_probs=203.5
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHHHHc----CC-CCCHh
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNL----VSWSAVIGGFTQNGYDEEAIGMLFRMQAE----GL-EPNAR 95 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~ 95 (601)
.+..+...+...|++++|+..|+++.+. .+.+. ..|..+...|...|++++|.+.+++..+. +- .....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445667888999999999999999885 23333 57889999999999999999999987653 11 22345
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHhc-----CCCchHHHHHHHHHHHhcCC-----------------HHHHHHHHh
Q 045105 96 TLSSVLPACARLQKLSLGKEFHGYITRNG-----FMSNPFVVNGLVDVYRRCGD-----------------MLSALKIFS 153 (601)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 153 (601)
++..+...+...|+++.|...++...+.. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67788888999999999999999887642 12234577888899999999 999998887
Q ss_pred hcCC-------C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----eeehHHHHHHHHhCCChhHHHHHHH
Q 045105 154 KFSI-------K--NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ-RG----IISWNSMISGYVDNSLYDEAFSMFR 219 (601)
Q Consensus 154 ~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~ 219 (601)
+... + ...++..+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7541 1 2346888889999999999999999998654211 11 2377888999999999999999998
Q ss_pred HHHHcCCCCCC----hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 220 DLLMRDGIEPT----SFTFGSVLIACADMNSLRKGKEIHALAIALGL-----QSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 220 ~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
+......-..+ ..++..+...+...|++++|...++....... .....++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 87652211112 45677778889999999999999998875421 1124577788999999999999999998
Q ss_pred hH
Q 045105 291 EI 292 (601)
Q Consensus 291 ~~ 292 (601)
..
T Consensus 368 ~a 369 (411)
T 4a1s_A 368 QH 369 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=104.27 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=110.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555432 2234455555556666666666666664444332 2334556666666777
Q ss_pred cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
.|++++|.+.++++ .. ..+...+..+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777665 11 23566777788888888999999999999999999888899999999999999999999998
Q ss_pred HHhhcCC
Q 045105 559 KMKDRRM 565 (601)
Q Consensus 559 ~~~~~~~ 565 (601)
+..+..+
T Consensus 169 ~~~~~~~ 175 (186)
T 3as5_A 169 KANELDE 175 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 8876653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.5e-11 Score=114.98 Aligned_cols=225 Identities=8% Similarity=-0.047 Sum_probs=169.6
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHh----CCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRC----GYDS-DVHIGTALVDMYAKCGSLKHARLAYKRIST-----PD-----LVSQN 402 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 402 (601)
....+...|+++.|...+....+. +-.+ ...++..+...|...|++++|...+++... ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677889999999999998764 2122 346778888999999999999998887651 22 24688
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc----CC-CcCchHHH
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY----DV-KPSLKHYT 472 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 472 (601)
.+...|...|++++|+..+++..+. +-.+. ..++..+...|...|++++|...++...+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999998753 11111 137888899999999999999999665552 33 33356788
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-C-----CC-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 473 CMVDLLSRAGELGEAYEFIKKIP-M-----AP-DSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~-~-----~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
.+...|.+.|++++|.+.+++.- . .| ....+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998761 1 22 22335667777888888 66666666665 223334568889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhc
Q 045105 543 LFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 543 ~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+|...|++++|.+.+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-11 Score=126.06 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (601)
...|+.|...|.+.|++++|+..|++.++. .|+ ..++..+..++.+.|++++|+..|+...+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 457788888888889999999999888884 454 5688888888899999999999986655543 234668888889
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
+|.+.|++++|++.|++. .+.| +...|..+...|...|++++|++.++++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999877 4455 56788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 045105 555 RTRQKMKD 562 (601)
Q Consensus 555 ~~l~~~~~ 562 (601)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=119.56 Aligned_cols=233 Identities=13% Similarity=0.080 Sum_probs=168.1
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-------CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--------
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRC-------GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-------- 395 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------- 395 (601)
+..++..+...+...|++++|..++..+.+. ..+.....+..+...|...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556788888999999999999999988874 3344567778888999999999999999887651
Q ss_pred ---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHC------CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc---
Q 045105 396 ---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS------GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY--- 462 (601)
Q Consensus 396 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 462 (601)
.....+..+...|...|++++|...+++..+. +-.|+ ...+..+...+...|++++|..+++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12356788888999999999999999998774 22343 346788888999999999999999665553
Q ss_pred ---CCCc-CchHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCChhHHHH
Q 045105 463 ---DVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKIP----------MAPD-------SVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 463 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-------~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
+..| ...++..+..+|...|++++|.+.++++- ..+. ...+..+...+...+.+..+..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 24577888999999999999999987761 1111 1122223333445667777888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.++.+....|..+.++..++.+|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888888899999999999999999999999988654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-11 Score=114.66 Aligned_cols=264 Identities=10% Similarity=0.020 Sum_probs=195.2
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHHHHHc----CCCC-CHhh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPN----LVSWSAVIGGFTQNGYDEEAIGMLFRMQAE----GLEP-NART 96 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 96 (601)
+......+...|++++|+..|+++.+. .+.+ ...|..+...+...|++++|.+.+++..+. +..| ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 444566788899999999999998885 2233 367888889999999999999998886543 2122 2456
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhcCC-Cc----hHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 045105 97 LSSVLPACARLQKLSLGKEFHGYITRNGFM-SN----PFVVNGLVDVYRRCGD--------------------MLSALKI 151 (601)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 151 (601)
+..+...+...|+++.|...++...+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777788888899999999998887754211 11 3377788888888899 8888888
Q ss_pred HhhcCC-----C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCeeehHHHHHHHHhCCChhHHHHH
Q 045105 152 FSKFSI-----K----NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ-----RGIISWNSMISGYVDNSLYDEAFSM 217 (601)
Q Consensus 152 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 217 (601)
+++... + ...++..+...+...|++++|.+.+++....... ....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876541 1 2346778888999999999999999887643111 1123677888899999999999999
Q ss_pred HHHHHHcCCCCCC----hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHhcCCHHHHHHH
Q 045105 218 FRDLLMRDGIEPT----SFTFGSVLIACADMNSLRKGKEIHALAIALGL-----QSDTFVGGALVEMYCRYQDLVAAQMA 288 (601)
Q Consensus 218 ~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (601)
+++......-.++ ..++..+...+...|++++|...++....... .....++..+..+|.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887652211122 44667777888999999999999988765421 11244677889999999999999999
Q ss_pred hhh
Q 045105 289 FDE 291 (601)
Q Consensus 289 ~~~ 291 (601)
++.
T Consensus 326 ~~~ 328 (338)
T 3ro2_A 326 AEK 328 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 983
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-10 Score=108.01 Aligned_cols=156 Identities=14% Similarity=0.049 Sum_probs=80.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCeeehH
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSI-----K----NEVSCNTIIVGYCENGNVAEARELFDQMEHLGV------QRGIISWN 199 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~~~~~~ 199 (601)
....+...|++++|...|++... + ...++..+...+...|++++|...+++....-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455667777777777766542 1 223566666777777777777777766653210 11124566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh----hhHHHHHHHhcccCCHHHHHHHHHHHHHc----CC-CCchhHHH
Q 045105 200 SMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS----FTFGSVLIACADMNSLRKGKEIHALAIAL----GL-QSDTFVGG 270 (601)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 270 (601)
.+...|...|++++|+..|++......-.++. .++..+...+...|+++.|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 66677777777777777776665411111111 23344444444455555555554444431 11 22233344
Q ss_pred HHHHHHHhcCCHHHHHHHhh
Q 045105 271 ALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~ 290 (601)
.+..+|.+.|++++|...++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 44444444444444444444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-10 Score=104.91 Aligned_cols=211 Identities=13% Similarity=0.016 Sum_probs=137.8
Q ss_pred hhHHHHHhhCCC---CCccchHHHHHHHH-------hcCCh-------HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh
Q 045105 9 DDAKKVFKMMPE---RDCVSWNSVVTACA-------ANGLV-------LEALECLERMSSLDNETPNLVSWSAVIGGFTQ 71 (601)
Q Consensus 9 ~~A~~~~~~~~~---~~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 71 (601)
++|...|+++.+ .++..|..++..+. +.|++ ++|..+|++..+. ..+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 577788888874 45567777777665 34775 8888888888872 134456688888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-h-hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH-hcCCHHHH
Q 045105 72 NGYDEEAIGMLFRMQAEGLEPNA-R-TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR-RCGDMLSA 148 (601)
Q Consensus 72 ~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~a 148 (601)
.|++++|.++|++..+. .|+. . .|..+...+.+.|+++.|..+|+...+.+ +.+...|........ ..|+.+.|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999888874 5543 2 67778888888888888888888887754 233444443333222 24677777
Q ss_pred HHHHhhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--CeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 149 LKIFSKFS---IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLG-VQR--GIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 149 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
..+|+... ..+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+++.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766554 2244556666666666666666666666666542 233 23355555566666666666666666655
Q ss_pred H
Q 045105 223 M 223 (601)
Q Consensus 223 ~ 223 (601)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=112.31 Aligned_cols=251 Identities=12% Similarity=0.043 Sum_probs=131.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcC
Q 045105 234 FGSVLIACADMNSLRKGKEIHALAIAL-------GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDG 306 (601)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g 306 (601)
+..+...+...|+++.|..+++.+.+. ..+....++..+..+|...|++++|...++..-..
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------- 98 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI----------- 98 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 333334444444444444444444432 22233456677888888889998888888732111
Q ss_pred CCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHH
Q 045105 307 FEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHA 386 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 386 (601)
.........+.....+..+...+...|++++|...+..+.+.... .
T Consensus 99 -------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---------------~------ 144 (311)
T 3nf1_A 99 -------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK---------------V------ 144 (311)
T ss_dssp -------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---------------H------
T ss_pred -------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---------------h------
Confidence 111100011112334555666666666666666666655442100 0
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHC------CCCccH-HhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 387 RLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS------GFRPDH-ISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 387 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
+..-.......+..+...|...|++++|+.++++..+. +..|+. .++..+...+...|++++|...++..
T Consensus 145 ---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 145 ---LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00000011234555666667777777777777776653 223332 36667777777888888888777554
Q ss_pred Hhc-------CCCcCch-H------HHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 460 AYY-------DVKPSLK-H------YTCMVDLLSRAGELGEAYEFIKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 460 ~~~-------~~~~~~~-~------~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
.+. ...+... . +..+...+...+.+.+|...++... ..| ...++..+...|...|++++|.+.+
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 432 1112111 1 1222233345556666666666663 233 4567888999999999999999999
Q ss_pred HHHHhcCCC
Q 045105 524 DRLIELEPN 532 (601)
Q Consensus 524 ~~~~~~~p~ 532 (601)
+++.++.|.
T Consensus 302 ~~al~l~~~ 310 (311)
T 3nf1_A 302 EAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 999998774
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-10 Score=96.35 Aligned_cols=168 Identities=15% Similarity=0.045 Sum_probs=141.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556677888899999999999998873 456788889999999999999999999998863 44567888889999
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...|++++|...++...... +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999997766553 446678888999999999999999999887 2233 67888899999999999999999
Q ss_pred HHHHHHhcCCCCCch
Q 045105 522 AADRLIELEPNNTGN 536 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~ 536 (601)
.++++.+..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999998876644
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-09 Score=101.35 Aligned_cols=216 Identities=13% Similarity=-0.011 Sum_probs=146.5
Q ss_pred HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh-------cCCh-------HHHHHHHHHHHHcCCCC-CHhhHHHHHHHH
Q 045105 40 LEALECLERMSSLDNETPNLVSWSAVIGGFTQ-------NGYD-------EEAIGMLFRMQAEGLEP-NARTLSSVLPAC 104 (601)
Q Consensus 40 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 104 (601)
++|+.+|++... ..+.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..+...+
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 678889998887 456677888888877763 4775 7888888888763 234 445777888888
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCc-hH-HHHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHH-hcCCHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSN-PF-VVNGLVDVYRRCGDMLSALKIFSKFSIK---NEVSCNTIIVGYC-ENGNVAE 178 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~-~~g~~~~ 178 (601)
...|+++.|..+|+.+++. .|+ .. +|..+...+.+.|++++|..+|++.... +...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888874 333 33 6777778888888888888888776532 2333332222211 2577777
Q ss_pred HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT--SFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
|..+|+...... +.+...|..++..+.+.|++++|..+|++........|+ ...|...+......|+.+.|..+++.
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877777776542 234566777777777777777777777777762223442 34556666666667777777777777
Q ss_pred HHHcC
Q 045105 257 AIALG 261 (601)
Q Consensus 257 ~~~~~ 261 (601)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.4e-11 Score=117.61 Aligned_cols=212 Identities=10% Similarity=-0.019 Sum_probs=136.8
Q ss_pred ChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 045105 38 LVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYD-EEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF 116 (601)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (601)
.+++++..++.... ..+.+...|..+...+...|++ ++|++.|++..+.. +-+...|..+...+...|++++|...
T Consensus 83 ~~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35566666666554 3444666666777777777777 77777777766542 22355666666777777777777777
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhc---------CCHHHHHHHHhhcC---CCCchhHHHHHHHHHhc--------CCH
Q 045105 117 HGYITRNGFMSNPFVVNGLVDVYRRC---------GDMLSALKIFSKFS---IKNEVSCNTIIVGYCEN--------GNV 176 (601)
Q Consensus 117 ~~~~~~~g~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~--------g~~ 176 (601)
|+...+.. |+...+..+..++... |++++|...|++.. ..+...|..+..++... |++
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 77776653 4456666666666666 77777777776654 23455666677777666 777
Q ss_pred HHHHHHHHHHHhcCCC--CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQ--RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEI 253 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 253 (601)
++|++.|++....... .+...|..+..+|...|++++|++.|++... ..|+ ...+..+...+...|++++|.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777665311 3556677777777777777777777777765 2233 34456666666667777777665
Q ss_pred HHHH
Q 045105 254 HALA 257 (601)
Q Consensus 254 ~~~~ 257 (601)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-10 Score=101.54 Aligned_cols=189 Identities=10% Similarity=-0.065 Sum_probs=88.0
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---C-CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-HHhHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---T-PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-HISFLSALS 441 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 441 (601)
+..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+. .|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 3444444555555555555555555443 1 34444444555555555555555555555543 232 234444555
Q ss_pred HHhccCchHHHHHHHHHHHhcCCCcCc-------hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 045105 442 ACVHAGSIKTGSEFFDLMAYYDVKPSL-------KHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD---SVMWGALLGGC 510 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~ 510 (601)
++...|++++|...++...+.. +.+. ..|..+...+...|++++|++.++++ ...|+ ...|..+...|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5555555555555553333321 1112 22444444444555555555555444 22333 22333333333
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
... +...++++..+.+.++..+... .....|.+++|...+++..+..+
T Consensus 164 ~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 322 2233444444443332222221 22333445999999998887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-10 Score=99.25 Aligned_cols=205 Identities=11% Similarity=0.012 Sum_probs=158.6
Q ss_pred CCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 045105 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLT 406 (601)
Q Consensus 330 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~ 406 (601)
.|+..+......+...|++++|...+....+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888889999999999999999999998765677777779999999999999999999876 345567888999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCccH-------HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC---chHHHHHHH
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRPDH-------ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS---LKHYTCMVD 476 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 476 (601)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999999853 2233 35777778889999999999999776654 443 557777778
Q ss_pred HhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 477 LLSRAGELGEAYEFIKKIP-M-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
+|...|+. +++++. . ..+...+.... ....+.+++|...++++.+++|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88666543 233321 1 22344443333 33456789999999999999999988887777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=105.71 Aligned_cols=224 Identities=13% Similarity=-0.005 Sum_probs=164.7
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCC-CC----chhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGY-DS----DVHIGTALVDMYAKCGSLKHARLAYKRIST-----PD-----LVSQN 402 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 402 (601)
....+...|+++.|...+....+... .+ ...++..+...|...|+++.|...+++... ++ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999999876421 11 345677888899999999999888876641 22 34678
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHh----cCCCcCchHHHH
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAY----YDVKPSLKHYTC 473 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 473 (601)
.+...|...|++++|+..+++..+. +-.+. ..++..+..++...|++++|...++.... .+.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8899999999999999999988763 21111 24677888899999999999999965554 122333667888
Q ss_pred HHHHhhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI----PM--APD-SVMWGALLGGCVSHGN---LEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
+...|.+.|++++|...+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999876 11 222 3345555555667777 66666666652 1223344677889999
Q ss_pred HHHcCCHHHHHHHHHHHhh
Q 045105 544 FAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 544 ~~~~g~~~~A~~~l~~~~~ 562 (601)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-08 Score=96.33 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=38.7
Q ss_pred hhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----C-CchHHHHHHHHH
Q 045105 478 LSRAGELGEAYEFIKKIP-MAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN-----N-TGNYVMLANLFA 545 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~ 545 (601)
+...|++++|...+++.. ..|. ...+..+...+...|++++|.+.++++.+..+. + ...+..++.++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 445555555555555441 1111 112334444455555555555555555443221 0 124444455555
Q ss_pred HcCCHHHHHHHHHHHh
Q 045105 546 YAGRWSDLARTRQKMK 561 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~ 561 (601)
..|++++|...+++..
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-08 Score=95.17 Aligned_cols=263 Identities=9% Similarity=-0.008 Sum_probs=135.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCe----eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh----hhHHHHHH
Q 045105 168 VGYCENGNVAEARELFDQMEHLGVQRGI----ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS----FTFGSVLI 239 (601)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~ 239 (601)
..+...|++++|...+++........+. .+++.+...+...|++++|...+++......-.++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444566666666666665543211111 134445556666677777777766655311111121 12334445
Q ss_pred HhcccCCHHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChh
Q 045105 240 ACADMNSLRKGKEIHALAIAL----GLQ--S-DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVY 312 (601)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (601)
.+...|+++.|...++..... +.. | ....+..+...+...|++++|...++. .......
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------al~~~~~---- 167 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS----------GIEVLSS---- 167 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------HHHHTTT----
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------HHHHhhc----
Confidence 566677777777776666543 211 2 234556677788889999999888882 2211000
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCc-hhHHh-----HHHHHHHhcCChHHH
Q 045105 313 TWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSD-VHIGT-----ALVDMYAKCGSLKHA 386 (601)
Q Consensus 313 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~a 386 (601)
.+......++..+...+...|++++|...++........++ ...+. ..+..+...|++++|
T Consensus 168 -------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 168 -------------YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp -------------SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 01011123455666677777888888888877765421111 11111 122335566777777
Q ss_pred HHHHhcCCCCCh-------hhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCccHH-hHHHHHHHHhccCchHHHHH
Q 045105 387 RLAYKRISTPDL-------VSQNAMLTAYAMHGHGKEGIAHFRRILAS----GFRPDHI-SFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 387 ~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 454 (601)
...++....+.. ..+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|..
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 777766653211 12344555566666666666666655432 1111111 33334444455555555555
Q ss_pred HHH
Q 045105 455 FFD 457 (601)
Q Consensus 455 ~~~ 457 (601)
.++
T Consensus 315 ~l~ 317 (373)
T 1hz4_A 315 VLL 317 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-08 Score=96.39 Aligned_cols=122 Identities=12% Similarity=-0.056 Sum_probs=63.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-C----CeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-----hhhHHHHH
Q 045105 169 GYCENGNVAEARELFDQMEHLGVQ-R----GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-----SFTFGSVL 238 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~ll 238 (601)
.+...|++++|...|++....... + ...++..+...|...|+++.|+..+++......-.++ ..++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 344555555555555555432100 1 1234555556666666666666666555431111111 22344445
Q ss_pred HHhcccCCHHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 239 IACADMNSLRKGKEIHALAIAL----GLQ-SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
..+...|+++.|.+.+....+. +.. ....++..+..+|...|++++|...++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555556666666555555432 111 113456667777888888888887777
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=9.6e-10 Score=101.86 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=152.2
Q ss_pred cCCCchhhHHHHHHHHHHh-------CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-----------CChhhHHHH
Q 045105 343 SSLATMERGKQVHAYAIRC-------GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-----------PDLVSQNAM 404 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l 404 (601)
...|+++.|...++...+. ..+....++..+...|...|++++|...++++.. ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888776653 2233566778888999999999999999887651 123467888
Q ss_pred HHHHHHcCChhhHHHHHHHHHHC------CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc------CCCc-CchH
Q 045105 405 LTAYAMHGHGKEGIAHFRRILAS------GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY------DVKP-SLKH 470 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~ 470 (601)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...++..... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998764 11233 457888888999999999999999665553 1122 3457
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCC
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKIP----------MAPD-SVMWGALLGGCVSHGNL------EFGQIAADRLIELEPNN 533 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~p~~ 533 (601)
+..+..+|...|++++|...++++- ..+. ...|..+...+...+.. ..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888899999999999999987761 1232 23333333333333322 22222222222233445
Q ss_pred CchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 534 TGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.++..++.+|...|++++|.+.+++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678899999999999999999999987653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-09 Score=84.46 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=81.3
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM-APDSVMWGALLGGCVSHG 514 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 514 (601)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444445555555555554333322 123344445555555556666666555554 11 224556667777778888
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 515 NLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++++|.+.++++.+..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888888888888777888888888888888888888888877654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=89.55 Aligned_cols=179 Identities=10% Similarity=0.032 Sum_probs=107.9
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH----hHHH
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIST--PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI----SFLS 438 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ 438 (601)
.+..+...+.+.|++++|...|+.+.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455566677777777777776652 32 134556666777777777777777777664 33321 2333
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH-HH-------------
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSV-MW------------- 503 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~------------- 503 (601)
+..++...+.. .+ ..|..+...+...|++++|+..|+++ ...|+.. .+
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 33333321100 00 00111111222344555555555554 2223211 11
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 504 ----GALLGGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 504 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
..+...|.+.|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 2445668889999999999999999999875 57899999999999999999999999887753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-09 Score=108.16 Aligned_cols=162 Identities=10% Similarity=-0.005 Sum_probs=128.2
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
..+|+.|...|.+.|++++|+..|++..+ ..+-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45788888888999999999999998887 445667888888899999999999999998888752 234667888888
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCCHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS--IK-NEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a 179 (601)
++...|++++|.+.|++.++.. +-+...+..+..+|...|++++|++.|++.. .| +...+..+...+...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888888764 4456778888888888888888888887765 23 566777888888888888888
Q ss_pred HHHHHHHHh
Q 045105 180 RELFDQMEH 188 (601)
Q Consensus 180 ~~~~~~m~~ 188 (601)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=99.67 Aligned_cols=188 Identities=9% Similarity=0.015 Sum_probs=121.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC---Ccc--HHhHHHH
Q 045105 374 VDMYAKCGSLKHARLAYKRIST-------P--DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF---RPD--HISFLSA 439 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l 439 (601)
...|...|++++|...|++... + ...+|+.+..+|...|++++|+..+++.++... .+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3356667777777777765541 1 134677788888888888888888887765310 111 2467777
Q ss_pred HHHHhcc-CchHHHHHHHHHHHhcCCCc-C----chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH--------HHHH
Q 045105 440 LSACVHA-GSIKTGSEFFDLMAYYDVKP-S----LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS--------VMWG 504 (601)
Q Consensus 440 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~--------~~~~ 504 (601)
...|... |++++|+..|+...+..... + ..++..+...|.+.|++++|+..+++. ...|+. ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7888885 88888888885544421111 1 345777888888889999998888876 222321 1456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--HcCCHHHHHHHHHHHh
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGN-----YVMLANLFA--YAGRWSDLARTRQKMK 561 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~l~~~~ 561 (601)
.+...+...|++++|...++++.+++|+.... +..++.++. ..+++++|...++++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 66677888899999999999999888865432 334555554 3566888877776543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.5e-10 Score=92.20 Aligned_cols=141 Identities=11% Similarity=0.039 Sum_probs=101.8
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
..+...|++++|+..++..... .|+. ..+..+...|.+.|++++|...|+...+.. +-+...|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3344556777777777776653 4433 356667777888888888888886655543 33466778888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI-AADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
++|+..|++. ...| +...|..+...|.+.|++++|.+ .++++.+++|+++.++.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4455 56778888888888888766554 4688999999888888888888887775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-08 Score=90.83 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=115.0
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHHHHh
Q 045105 386 ARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDLMAY 461 (601)
Q Consensus 386 a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (601)
|...|++.. .++..++..+..++...|++++|++++.+.+..+-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555444 2444555566777777888888888888776654322 334666777788888888888888877665
Q ss_pred cCCCc-----CchHHHHHHHH--hhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 045105 462 YDVKP-----SLKHYTCMVDL--LSRAG--ELGEAYEFIKKIP-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL-- 529 (601)
Q Consensus 462 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 529 (601)
. .| +..+...|..+ ....| +..+|..+|+++. ..|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4 34 24444555555 22333 7888888888773 2344333344444677778888888888877665
Q ss_pred --------CCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 530 --------EPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 530 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777777777777776 7778888777766
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-09 Score=98.30 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=98.5
Q ss_pred CCCCCchhHHHHHhhCCC-------CC----ccchHHHHHHHHhcCChHHHHHHHHHhhhc------CCCCCChhhHHHH
Q 045105 3 GKCGSLDDAKKVFKMMPE-------RD----CVSWNSVVTACAANGLVLEALECLERMSSL------DNETPNLVSWSAV 65 (601)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~~~l 65 (601)
...|++++|++.|++..+ ++ ..++..+...+...|++++|+..|++..+. ...+....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345777777777777663 12 346777777888888888888888877653 1223345677778
Q ss_pred HHHHhhcCChHHHHHHHHHHHHc------CC-CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh------cCCC-chHH
Q 045105 66 IGGFTQNGYDEEAIGMLFRMQAE------GL-EPNARTLSSVLPACARLQKLSLGKEFHGYITRN------GFMS-NPFV 131 (601)
Q Consensus 66 i~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~ 131 (601)
...|...|++++|.+.+++..+. .- +....++..+...+...|++++|...++...+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888777653 11 122445666667777777777777777777654 1111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 132 VNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
+..+..++...|++++|...|++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=93.61 Aligned_cols=182 Identities=10% Similarity=0.006 Sum_probs=102.6
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC--C-C---hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-Ccc-HHhHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST--P-D---LVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RPD-HISFLS 438 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 438 (601)
...+-.+...+.+.|++++|...|+.+.. | + ...+..+..+|...|++++|+..|++.++... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455556666666666666665542 2 2 34455555666666666666666666665321 111 223444
Q ss_pred HHHHHhc--------cCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045105 439 ALSACVH--------AGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509 (601)
Q Consensus 439 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 509 (601)
+..++.. .|++++|...|+...+.. |+ ......+.......+.. ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4555555 566666666664443322 22 11111111000000000 0113455667
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHc----------CCHHHHHHHHHHHhhcCC
Q 045105 510 CVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYA----------GRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~l~~~~~~~~ 565 (601)
|...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..+
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7888888888888888888888743 4777888888766 888888888888876653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=94.25 Aligned_cols=202 Identities=8% Similarity=-0.022 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHh----CCCCc-hhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CC----hh
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRC----GYDSD-VHIGTALVDMYAKCGSLKHARLAYKRIST-----PD----LV 399 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~ 399 (601)
.|......+...|++++|...+....+. +-+++ ..+++.+..+|.+.|++++|...+++... .+ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556667788899999999999887754 32222 56788899999999999999999987762 22 34
Q ss_pred hHHHHHHHHHHc-CChhhHHHHHHHHHHCCCCcc-------HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch--
Q 045105 400 SQNAMLTAYAMH-GHGKEGIAHFRRILASGFRPD-------HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK-- 469 (601)
Q Consensus 400 ~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 469 (601)
+++.+...|... |++++|+..|++.++. .|+ ..++..+...+...|++++|...++............
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 788899999996 9999999999998773 221 3468888999999999999999997766654332221
Q ss_pred ----HHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCch
Q 045105 470 ----HYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSV------MWGALLGGCV--SHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 470 ----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
.+..+..++...|++++|+..+++. .+.|+.. .+..++.++. ..+++++|+..++++..++|.....
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 4667788899999999999999987 4445422 3444555554 3466888888888888887744333
Q ss_pred H
Q 045105 537 Y 537 (601)
Q Consensus 537 ~ 537 (601)
+
T Consensus 277 ~ 277 (292)
T 1qqe_A 277 L 277 (292)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-09 Score=112.14 Aligned_cols=169 Identities=9% Similarity=-0.055 Sum_probs=100.6
Q ss_pred HhcCChHHHHHHHhcCC-----------CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc
Q 045105 378 AKCGSLKHARLAYKRIS-----------TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (601)
...|++++|...+++.. ..+...+..+...|...|++++|+..|++..+.. +-+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666665543 2344556666666666667777776666666642 22344566666666666
Q ss_pred CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 045105 447 GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAAD 524 (601)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 524 (601)
|++++|...|+...+.. +-+...+..+..+|.+.|++++ ++.|+++ ...| +...|..+...+...|++++|.+.++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777766665544432 2234556666666666666666 6666655 2233 44556666666666677777777777
Q ss_pred HHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 525 RLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
++.+++|++..++..++.++...|+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 7776666666666666666655443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-08 Score=93.18 Aligned_cols=204 Identities=10% Similarity=0.008 Sum_probs=145.5
Q ss_pred CCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC--chhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhH
Q 045105 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDS--DVHIGTALVDMYAKCGSLKHARLAYKRIST--PD----LVSQ 401 (601)
Q Consensus 330 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~ 401 (601)
.+...+-.....+...|++++|...+..+.+..... ....+..+..+|.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 456677778888999999999999999998865321 156777888999999999999999998862 32 3456
Q ss_pred HHHHHHHHH--------cCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHH
Q 045105 402 NAMLTAYAM--------HGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYT 472 (601)
Q Consensus 402 ~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 472 (601)
..+..++.. .|++++|+..|++.++. .|+.. ....+.... .....+ ...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~-------~~~~~~-----------~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIR-------ELRAKL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHH-------HHHHHH-----------HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHH-------HHHHHH-----------HHHHH
Confidence 777888888 99999999999999985 45432 222211100 000011 11245
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCc--
Q 045105 473 CMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSH----------GNLEFGQIAADRLIELEPNNTG-- 535 (601)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 535 (601)
.+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|...++++.+..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888999999999998877 22333 34566677777755 8899999999999999998764
Q ss_pred -hHHHHHHHHHHcCCHHHH
Q 045105 536 -NYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 536 -~~~~l~~~~~~~g~~~~A 553 (601)
+...+..++.+.|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 444556566665655543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.7e-09 Score=95.17 Aligned_cols=174 Identities=7% Similarity=-0.047 Sum_probs=133.8
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCC
Q 045105 386 ARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVK 465 (601)
Q Consensus 386 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (601)
....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~ 181 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D 181 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h
Confidence 3344444444455666777788889999999999999998852 334567888888999999999999999665443 3
Q ss_pred cCchHHHHH-HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CchHHHH
Q 045105 466 PSLKHYTCM-VDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN--TGNYVML 540 (601)
Q Consensus 466 ~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l 540 (601)
|+....... ...+...++.++|+..+++. ...| +...+..+...+...|++++|.+.++++.+.+|++ ...+..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 443332222 23366778888888888776 3345 67788899999999999999999999999999987 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 045105 541 ANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 541 ~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
+.+|...|+.++|...+++...
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999998887543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-08 Score=79.51 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (601)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677788888899999999999988764 3456677788888888999999999996666543 345667788888999
Q ss_pred hcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 480 RAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
..|++++|.+.++++ ... .+...+..+...+...|++++|...++++.+..|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999877 223 35778888889999999999999999999998884
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.6e-09 Score=88.47 Aligned_cols=156 Identities=7% Similarity=0.029 Sum_probs=94.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH-hhhcC
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL-LSRAG 482 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 482 (601)
+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++..... .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 3444455555555555555554421 122334455555555555555555555433222 1222222111111 11212
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 483 ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN--TGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
...+|+..+++. ...| +...+..+...+...|++++|...++++.+.+|+. +..+..++.++...|+.++|...++
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 223456666655 3345 57788888889999999999999999999999864 5588999999999999999999988
Q ss_pred HHhh
Q 045105 559 KMKD 562 (601)
Q Consensus 559 ~~~~ 562 (601)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-07 Score=83.64 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=130.4
Q ss_pred CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccC----chHHHHHHHHHHHhcCCCcCchH
Q 045105 395 TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAG----SIKTGSEFFDLMAYYDVKPSLKH 470 (601)
Q Consensus 395 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~ 470 (601)
..+...+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|+...+.+ +...
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a 87 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG 87 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3566677777888888899999999999988865 45566666677777 6 8999999997766654 4556
Q ss_pred HHHHHHHhhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 471 YTCMVDLLSR----AGELGEAYEFIKKIP-MAPD---SVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 471 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
+..|...|.. .+++++|+++|++.- ..|+ +..+..|...|.. .+|+++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7777777876 889999999999873 3342 6788888888888 78999999999999998 66888999
Q ss_pred HHHHHHHHc-C-----CHHHHHHHHHHHhhcCC
Q 045105 539 MLANLFAYA-G-----RWSDLARTRQKMKDRRM 565 (601)
Q Consensus 539 ~l~~~~~~~-g-----~~~~A~~~l~~~~~~~~ 565 (601)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999988874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=103.47 Aligned_cols=160 Identities=11% Similarity=0.009 Sum_probs=121.0
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH
Q 045105 380 CGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
.|++++|...|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988773 456788889999999999999999999999853 334678888899999999999999999
Q ss_pred HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCC
Q 045105 457 DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH---GNLEFGQIAADRLIELEP 531 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p 531 (601)
+...+.. +.+...+..+..+|.+.|++++|++.+++. ...| +...+..+...+... |+.++|.+.++++.+.+|
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 7666643 344678888999999999999999999887 3344 567888888899999 999999999999999999
Q ss_pred CCCchHHHHH
Q 045105 532 NNTGNYVMLA 541 (601)
Q Consensus 532 ~~~~~~~~l~ 541 (601)
++...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8888877766
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-09 Score=85.41 Aligned_cols=98 Identities=7% Similarity=-0.108 Sum_probs=85.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...+..+...+.+.|++++|+..|+++ ...| +...|..+...|...|++++|++.++++.+++|+++..+..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 446677778888999999999999887 3455 67888899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCC
Q 045105 546 YAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~~~ 565 (601)
..|++++|...+++..+...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999887663
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=5e-08 Score=85.55 Aligned_cols=128 Identities=11% Similarity=0.070 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
+.+..+|...|++++|+..|++.++.. +-+...+..+..++...|++++|...|+...+.. +.+...+..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 347888999999999999999998853 3356688888999999999999999997766653 33466788888887665
Q ss_pred CC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 482 GE--LGEAYEFIKKIPMAPDSV--MWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 482 g~--~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
|+ .+.+...+++.. .|++. .+.....++...|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 53 455666676663 44433 3444555666789999999999999999994
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.2e-08 Score=80.21 Aligned_cols=139 Identities=4% Similarity=-0.123 Sum_probs=110.5
Q ss_pred CCCCCCchhHHHHHhhCCCCC---ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 2 YGKCGSLDDAKKVFKMMPERD---CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
+...|++++|++.|++..+.+ ...+..+...|.+.|++++|++.|++..+ ..|-+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHH
Confidence 556789999999999988643 44666788899999999999999999988 4567888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHH-HHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF-HGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+..|++..+.. +-+...+..+...+.+.|+.+++.+. ++...+.. +.++.+|......+...|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999988762 33567888888889999998776654 57777764 4456677777776666664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=86.06 Aligned_cols=181 Identities=8% Similarity=0.014 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 351 GKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-----PDLVSQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
+...++...+.+ .++...+..+..++...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 34555556788899999999999999998742 345677788899999999999999999998
Q ss_pred HCCCCc-----cHHhHHHHHHHH--hccC--chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 045105 426 ASGFRP-----DHISFLSALSAC--VHAG--SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP- 495 (601)
Q Consensus 426 ~~~~~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 495 (601)
+. .| +..+...+..++ ...| ++.+|..+|+.+.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 84 67 355666666663 3334 899999999776553 3443344455568999999999999998652
Q ss_pred C----------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 496 M----------AP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 496 ~----------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
. .| ++.+...++......|+ .|.+.++++.+..|++|.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 24 55566566666666676 889999999999998876554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-06 Score=85.82 Aligned_cols=200 Identities=7% Similarity=-0.101 Sum_probs=103.1
Q ss_pred chhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC-hHHHHHHHHHHH
Q 045105 8 LDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY-DEEAIGMLFRMQ 86 (601)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 86 (601)
++.|..+|+.+.. .+-. |+++.+..+|+..... .|++..|...+....+.++ .+....+|+...
T Consensus 11 i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666665543 2211 7788888888887762 3688888888777776653 355666777666
Q ss_pred Hc-CCC-CCHhhHHHHHHHHH----hcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhc-------------CCHHH
Q 045105 87 AE-GLE-PNARTLSSVLPACA----RLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRC-------------GDMLS 147 (601)
Q Consensus 87 ~~-~~~-p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-------------~~~~~ 147 (601)
.. |.. ++...|...+..+. ..++.+.+..+|+..+......-...|......-... +.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 54 433 35566666665543 2356777888888887732211112222222111110 11122
Q ss_pred HHHHHhhcCC----CCchhHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHH
Q 045105 148 ALKIFSKFSI----KNEVSCNTIIVGYCENG--N-----VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFS 216 (601)
Q Consensus 148 a~~~~~~~~~----~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 216 (601)
|..+++.... .+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+++.|.+
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222110 12223333333222111 0 234556666666543 3345556666666667777777777
Q ss_pred HHHHHHH
Q 045105 217 MFRDLLM 223 (601)
Q Consensus 217 ~~~~~~~ 223 (601)
+|++...
T Consensus 235 i~erAi~ 241 (493)
T 2uy1_A 235 VVERGIE 241 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.4e-08 Score=85.90 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=116.8
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHH----------------HHHHHhccCchHHHHHHHHHHHhcCCC
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLS----------------ALSACVHAGSIKTGSEFFDLMAYYDVK 465 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (601)
.....+...|++++|+..|++.++. .|+. ..+.. +..++.+.|++++|...++...+.. +
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 3445566778888888888887774 4543 34555 7888999999999999997766653 3
Q ss_pred cCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGN--LEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 466 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
-+...+..+..+|...|++++|+..|+++ ...| +...|..+...|...|+ .+.+...++++....| ....+...+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 45678899999999999999999999987 4456 56778888888766553 4455566666554332 223566678
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++...|++++|...+++..+..+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 888899999999999999887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-08 Score=101.35 Aligned_cols=167 Identities=10% Similarity=-0.085 Sum_probs=115.7
Q ss_pred CCCCchhHHHHHhhCC--------C---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhc
Q 045105 4 KCGSLDDAKKVFKMMP--------E---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQN 72 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~--------~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 72 (601)
..|++++|++.|+++. + .+...+..+..++.+.|++++|+..|++..+ ..+.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHc
Confidence 4577888888887765 2 3445677777778888888888888888777 3455677777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 045105 73 GYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIF 152 (601)
Q Consensus 73 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (601)
|++++|++.|++..+.. +-+...+..+..++...|++++ .+.|+..++.. +.+...+..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877652 2245567777777778888888 88888877764 445567777777888888888888888
Q ss_pred hhcCCC---CchhHHHHHHHHHhcCC
Q 045105 153 SKFSIK---NEVSCNTIIVGYCENGN 175 (601)
Q Consensus 153 ~~~~~~---~~~~~~~li~~~~~~g~ 175 (601)
++...- +...+..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 777633 23345555555544443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-08 Score=77.31 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 045105 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH 513 (601)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 513 (601)
+......+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444444444444444443333221 222334444444444444444444444443 1122 333444444444445
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 514 GNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
|++++|.+.++++++++|+++.++..+.
T Consensus 95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 5555555555555555554444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-08 Score=77.98 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=87.9
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+......|.+.|++++|++.|++. ...| +...|..+...|...|++++|++.++++++++|+++.++..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 46677888999999999999999987 3455 678899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcCC
Q 045105 547 AGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~~ 565 (601)
.|++++|.+.+++..+..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHCc
Confidence 9999999999999887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=83.07 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (601)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++...... +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45556677778888888888888763 5677788888888888888888888886555543 334567777888888
Q ss_pred hcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 480 RAGELGEAYEFIKKI-PMAP-D----------------SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
..|++++|++.+++. ...| + ...+..+...+...|++++|.+.++++.+..|++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888776 2122 1 2567777777888888888888888888888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=88.77 Aligned_cols=185 Identities=12% Similarity=-0.001 Sum_probs=132.8
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCC---CCcc--HH
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIST-----PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILASG---FRPD--HI 434 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~ 434 (601)
.|......|...|++++|...|.+... .+ ...|+.+...|...|++++|+..|++.++.- -.|. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344456678888999999888876651 11 3478888899999999999999999876531 1222 24
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCc-----CchHHHHHHHHhhhcCChHHHHHHHHhCC-C---CCC----HH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKP-----SLKHYTCMVDLLSRAGELGEAYEFIKKIP-M---APD----SV 501 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~ 501 (601)
++..+...|.. |++++|+..++......... ...++..+...|.+.|++++|+..+++.- . .++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67788888888 99999999996544421111 14577888999999999999999998771 1 111 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch-----HHHHHHHHHHcCCHHHHHHH
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN-----YVMLANLFAYAGRWSDLART 556 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 556 (601)
.+..+...+...|++++|...++++. ..|..... ...++.++ ..|+.+.+.++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 55666667778899999999999999 98875433 33455544 67887777664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=97.73 Aligned_cols=146 Identities=12% Similarity=-0.038 Sum_probs=79.7
Q ss_pred CchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHH
Q 045105 346 ATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFR 422 (601)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (601)
|++++|...++...+.. +.+...+..+...+...|++++|...|++.. +.+...+..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666666666665443 2245556666666667777777777776654 2344566666666777777777777777
Q ss_pred HHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc---CChHHHHHHHHhC
Q 045105 423 RILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA---GELGEAYEFIKKI 494 (601)
Q Consensus 423 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 494 (601)
+..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 766642 2234566666666777777777777775544432 22345566666666666 6777777666655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=81.94 Aligned_cols=98 Identities=9% Similarity=0.023 Sum_probs=75.3
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...+..+...+.+.|++++|+..|+++ ...| +...|..+...|...|++++|.+.++++.+++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445566667777888888888887776 2334 66677777778888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHhhcCC
Q 045105 546 YAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~~~ 565 (601)
..|++++|.+.+++..+..+
T Consensus 101 ~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 88888888888887766543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=4.4e-08 Score=90.37 Aligned_cols=192 Identities=10% Similarity=-0.037 Sum_probs=126.2
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+.+.|++++|...|++.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455566677777788888888877665 3466777888888888888999988888888752 33456777888888
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
...|++++|...++...+... -+...+...+....+..+...... ........+......+ ..+ ..|++++|.+.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEEC 158 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHH
Confidence 889999999988865544321 111112222222222221111111 2222223344433333 333 368999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHc-CCHHHHHHHHHHHhhc
Q 045105 524 DRLIELEPNNTGNYVMLANLFAYA-GRWSDLARTRQKMKDR 563 (601)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~ 563 (601)
+++.+.+|++......+...+.+. +++++|.++|++..+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998877777787777776 7899999999988654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.8e-07 Score=82.67 Aligned_cols=159 Identities=9% Similarity=0.009 Sum_probs=119.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCC-CCccHH----hHHHHHHHHhccCchHHHHHHHHHHHhcCCC-cC----chHHH
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASG-FRPDHI----SFLSALSACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYT 472 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 472 (601)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++........ ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988743 123321 2334666677788999999999666653222 22 22688
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchH
Q 045105 473 CMVDLLSRAGELGEAYEFIKKIP-------MA-P-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNY 537 (601)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 537 (601)
.+..+|...|++++|+..++++- .. + ...++..+...|...|++++|.+.++++.+..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999887761 11 2 13477888889999999999999999999875432 5688
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHh
Q 045105 538 VMLANLFAYAGR-WSDLARTRQKMK 561 (601)
Q Consensus 538 ~~l~~~~~~~g~-~~~A~~~l~~~~ 561 (601)
..++.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999988775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-07 Score=85.02 Aligned_cols=140 Identities=10% Similarity=-0.021 Sum_probs=73.9
Q ss_pred HHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 045105 12 KKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLE 91 (601)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 91 (601)
.+.+......+...+..+...+.+.|++++|...|+...+ ..|.+...+..+...+...|++++|...+++.... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h
Confidence 3334443333444455555666666666666666666665 33445566666666666666666666666666543 3
Q ss_pred CCHhhHHHHH-HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 92 PNARTLSSVL-PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 92 p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
|+........ ..+...++.+.|...++...+.. +.+...+..+..++...|++++|...|.++.
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333222222 12344455555666565555543 3344455555555555555555555554443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-07 Score=77.75 Aligned_cols=156 Identities=13% Similarity=-0.028 Sum_probs=94.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA- 103 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~- 103 (601)
.+..+...+.+.|++++|+..|+...+ ..|.+...+..+..++...|++++|+..+++..+. .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH
Confidence 455667788889999999999999877 45667788899999999999999999999988765 3344333222111
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC---chhHHHHHHHHHhcCCHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KN---EVSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~ 178 (601)
+...+....+...++...+.. +.+...+..+..++...|++++|...|++... |+ ...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112223334566666666543 23455555566666666666666655555432 11 2234444444444444444
Q ss_pred HHHHHHH
Q 045105 179 ARELFDQ 185 (601)
Q Consensus 179 a~~~~~~ 185 (601)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-06 Score=77.11 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=163.8
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC--ChHHHHHHHhcCC---CCChhhHHHHHHHH----HHc---C
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG--SLKHARLAYKRIS---TPDLVSQNAMLTAY----AMH---G 412 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~---~~~~~~~~~ll~~~----~~~---~ 412 (601)
....++|....+.++..+.. +...++.--..+...| +++++..+++.+. +.+...|+.-...+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 34446899999988887633 4455565566667777 9999999999887 34556676655555 455 7
Q ss_pred ChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH--HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCC------h
Q 045105 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK--TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE------L 484 (601)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 484 (601)
++++++.+++++.+.. +-|..+|..-.-.+.+.|.++ +++..++.+.+.. +-|...|+.-...+.+.|+ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8999999999999863 446667777777777788888 9999997777655 3455677766666666666 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcC---CCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGN-LEFGQIAADRLIELE---PNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
+++++.++++ ...| |...|+.+...+.+.|+ .+......+++.+++ |.++.++..++.+|.+.|+.++|.+.++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888776 3455 78889888888888887 444667888888776 7788999999999999999999999999
Q ss_pred HHhh
Q 045105 559 KMKD 562 (601)
Q Consensus 559 ~~~~ 562 (601)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-07 Score=83.11 Aligned_cols=162 Identities=8% Similarity=-0.063 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-H----HhHHHHHHHHhccCchHHHHHHHHHHHhcCC---CcC--ch
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-H----ISFLSALSACVHAGSIKTGSEFFDLMAYYDV---KPS--LK 469 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 469 (601)
.+...+..+...|++++|...+++..+...... . ..+..+...+...|++++|...++....... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778888999999998888877532211 1 1233455667788899999999865544221 111 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------CC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKIP----MAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN------NT 534 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 534 (601)
+++.+...|...|++++|+..++++- ..|+ ..++..+...|...|++++|.+.++++.+..++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888899999999999999887751 1222 257888888999999999999999999887432 14
Q ss_pred chHHHHHHHHHHcCCHHHH-HHHHHHHh
Q 045105 535 GNYVMLANLFAYAGRWSDL-ARTRQKMK 561 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A-~~~l~~~~ 561 (601)
.++..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77677654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-05 Score=79.38 Aligned_cols=201 Identities=9% Similarity=0.009 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-CChh-hHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-PDLV-SQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
.+.+..+++.+.... +.++.+|...+..+.+.|+++.|..++++... |... .|. .|....+.++. ++.+.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHH
Confidence 345677888888754 45678888888888999999999999986652 3222 222 23332222222 33333
Q ss_pred HCC---------CCc---cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh-cCChHHHHHHHH
Q 045105 426 ASG---------FRP---DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR-AGELGEAYEFIK 492 (601)
Q Consensus 426 ~~~---------~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 492 (601)
+.- ..+ ....|...+....+.+..+.|..+|... .. ...+...|......-.. .++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 211 011 1235666677777788899999999765 21 12233444332222222 336999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 493 KI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 493 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.. ..-| ++..|...+......|+.+.|..+++++ +.....+..++..-...|+.+.+..+++++.+
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 76 1123 3445666777778889999999999997 33556777777777788999999998888763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.2e-07 Score=79.62 Aligned_cols=185 Identities=10% Similarity=-0.012 Sum_probs=126.4
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC--chhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChh----hHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDS--DVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLV----SQN 402 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~----~~~ 402 (601)
+...+-.+...+...|++++|...++.+.+..... ....+..+..+|.+.|++++|...|+++. .|+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566778889999999999999999865322 23567778899999999999999999876 23322 344
Q ss_pred HHHHHHHH------------------cCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcC
Q 045105 403 AMLTAYAM------------------HGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYD 463 (601)
Q Consensus 403 ~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (601)
.+..++.. .|++++|+..|+++++. .|+.. ....... . ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHH---
Confidence 55555554 45677777777777764 34432 2211110 0 00000000
Q ss_pred CCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 464 VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS----VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 464 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|++++|.+.++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01134567888999999999999887 233432 46778889999999999999999999999887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.8e-07 Score=77.85 Aligned_cols=129 Identities=10% Similarity=-0.008 Sum_probs=77.6
Q ss_pred hHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 371 TALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556666677777777766666666666666666666777777777776666642 334456666666666667777
Q ss_pred HHHHHHHHHHhcCCC--------------c-CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH
Q 045105 451 TGSEFFDLMAYYDVK--------------P-SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS 500 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 500 (601)
+|...++...+.... | ....+..+..+|.+.|++++|.+.+++. ...|+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 777666544442211 0 1145556666666667777776666665 334543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=77.08 Aligned_cols=95 Identities=12% Similarity=-0.027 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.+..+...+.+.|++++|+..|+++ ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4444556666777777777777665 2234 5666677777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhhcC
Q 045105 548 GRWSDLARTRQKMKDRR 564 (601)
Q Consensus 548 g~~~~A~~~l~~~~~~~ 564 (601)
|++++|.+.+++..+..
T Consensus 100 g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 100 GDLDGAESGFYSARALA 116 (142)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 77777777777766554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-07 Score=87.98 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=82.0
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|.+.++++.+++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357788889999999999999999887 3344 67888899999999999999999999999999999999999999999
Q ss_pred HcCCHHHH-HHHHHHHh
Q 045105 546 YAGRWSDL-ARTRQKMK 561 (601)
Q Consensus 546 ~~g~~~~A-~~~l~~~~ 561 (601)
..|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44566663
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-07 Score=75.15 Aligned_cols=127 Identities=6% Similarity=0.043 Sum_probs=95.3
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVS 512 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 512 (601)
.+..+...+...|++++|...++...... +.+...+..+..++...|++++|++.+++. ...| +...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45555666667777777777775544432 234566777777788888888888887766 2234 56778888888999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHH--HHHHcCCHHHHHHHHHHHhh
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLAN--LFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~l~~~~~ 562 (601)
.|++++|.+.++++.+..|.++..+..+.. .+...|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988887755444 48889999999999887643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=71.29 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=87.1
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHHH
Q 045105 467 SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN--NTGNYVMLAN 542 (601)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 542 (601)
+...+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|.+.++++.+..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556778888888999999999998876 2233 6778888888999999999999999999999999 8999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHhhcCCcc
Q 045105 543 LFAYA-GRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 543 ~~~~~-g~~~~A~~~l~~~~~~~~~~ 567 (601)
++... |++++|.+.+++..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999998877544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=79.53 Aligned_cols=122 Identities=6% Similarity=0.064 Sum_probs=52.8
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH-hhhcCCh--HH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL-LSRAGEL--GE 486 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 486 (601)
..|++++|+..+++..+.. +.+...+..+...+...|++++|...++...... +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555555432 2233445555555555555555555553333321 1123334444444 3444444 44
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
|+..++++ ...| +...+..+...+...|++++|...++++.+..|++
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 54444443 1122 23344444444444455555555555555544443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=6.6e-07 Score=70.59 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=79.4
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM-APDSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 511 (601)
..+..+...+...|++++|...++.+.... +.+...+..+...+.+.|++++|...++++ .. ..+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 455556666666777777777765544432 234456666677777777777777777665 22 235667777888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
..|++++|...++++.+..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888887776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=74.50 Aligned_cols=96 Identities=13% Similarity=0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.+..+...+.+.|++++|+..++++ ...| +...|..+...+...|++++|+..++++.+++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677888999999999999887 3355 6778888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 045105 548 GRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 548 g~~~~A~~~l~~~~~~~~ 565 (601)
|++++|...+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.7e-07 Score=71.58 Aligned_cols=115 Identities=7% Similarity=0.007 Sum_probs=78.7
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 511 (601)
..+..+...+...|++++|...++...... +.+...+..+..+|...|++++|++.++++ ...| +...+..+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455556666666666666666665544332 224456666666677777777777777665 2223 5667777777788
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
..|++++|.+.++++.+..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888877664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.5e-07 Score=73.21 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=87.4
Q ss_pred CCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 045105 429 FRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGA 505 (601)
Q Consensus 429 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 505 (601)
+.|+. ..+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|+++ ...| ++..|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45654 367778888999999999999997766653 445778889999999999999999999887 3455 5778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+..+|...|++++|.+.++++.++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-07 Score=73.85 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=75.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+..+...+.+.|++++|+..|++. ...| +...|..+...+...|++++|+..++++.+.+|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556667777888888888887766 2334 567777788888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 888888888888776554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.8e-07 Score=80.69 Aligned_cols=184 Identities=7% Similarity=-0.104 Sum_probs=124.8
Q ss_pred hcCChHHHHHHHhcCC---CCChhhHHHH-------HHHHHHcCChhhHHHHHHHHHHCCCCccH---------------
Q 045105 379 KCGSLKHARLAYKRIS---TPDLVSQNAM-------LTAYAMHGHGKEGIAHFRRILASGFRPDH--------------- 433 (601)
Q Consensus 379 ~~g~~~~a~~~~~~~~---~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------- 433 (601)
..++...|.+.|.++. +.....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4567777777777665 2334566666 4555555556666665555544 22221
Q ss_pred -------HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HH
Q 045105 434 -------ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS----VM 502 (601)
Q Consensus 434 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 502 (601)
.....+...+...|++++|.+.|..+...+ |+......+...+.+.|++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 122335567778889999999886644433 33325555666788899999999999876433332 35
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC--CC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELE--PN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
+..+..++...|++++|++.|+++.+-. |. .+......+.++.+.|+.++|...|+++.+..+.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6777788888999999999999887543 43 3457788888999999999999999999887754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=71.92 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=88.5
Q ss_pred HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 045105 433 HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGC 510 (601)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 510 (601)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|++.+++. ...| +...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456666677777777777777775544432 334566777777788888888888887766 2233 566778888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCH
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRW 550 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (601)
...|++++|.+.++++.+..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999999998888999999998888875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.7e-07 Score=84.77 Aligned_cols=195 Identities=6% Similarity=-0.020 Sum_probs=143.8
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
.|++++|..+++...+.... + .+...+++++|...|+. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 46677777777776654211 1 11115788888777654 466788999999999999987
Q ss_pred HHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc----CCCc-CchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 425 LAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY----DVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 425 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
.+. +-.+. ..+|..+...|...|++++|...++..... |-.. ...++..+..+|.. |++++|+..+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 21111 247888889999999999999999554432 2111 13567788888988 9999999999876
Q ss_pred -CCC-----C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------chHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 495 -PMA-----P--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT------GNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 495 -~~~-----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
.+. + ...++..+...|...|++++|++.++++.++.|.+. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 1 145778888999999999999999999999866543 26677888888999999999999998
Q ss_pred h
Q 045105 561 K 561 (601)
Q Consensus 561 ~ 561 (601)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 8
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-06 Score=74.59 Aligned_cols=175 Identities=9% Similarity=-0.060 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCChhhHHHHHHHHHHcC----ChhhHHHHHHHH
Q 045105 350 RGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVSQNAMLTAYAMHG----HGKEGIAHFRRI 424 (601)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m 424 (601)
+|...|....+.| ++..+..+...|...+++++|...|++.. ..+...+..|...|.. + ++++|+.+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3555666666654 56667777888888899999999998776 4566777777777777 6 899999999999
Q ss_pred HHCCCCccHHhHHHHHHHHhc----cCchHHHHHHHHHHHhcCCC-cCchHHHHHHHHhhh----cCChHHHHHHHHhC-
Q 045105 425 LASGFRPDHISFLSALSACVH----AGSIKTGSEFFDLMAYYDVK-PSLKHYTCMVDLLSR----AGELGEAYEFIKKI- 494 (601)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 494 (601)
.+.| +...+..|...|.. .+++++|..+|+...+.+.. .++..+..|...|.. .+++++|+..|++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8865 45566777777776 78999999999776665532 125677788888887 78999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 045105 495 PMAPDSVMWGALLGGCVSH-G-----NLEFGQIAADRLIELEP 531 (601)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 531 (601)
....+...+..|...|... | |+++|...++++.+...
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3224566677777777653 3 89999999999998854
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-07 Score=76.22 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=90.8
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGG 509 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 509 (601)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44578888889999999999999996666543 335678888999999999999999999887 3345 57788889999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 510 CVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
|...|++++|.+.++++.++.|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999988886655543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=74.14 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=86.6
Q ss_pred HHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 045105 421 FRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP 498 (601)
Q Consensus 421 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 498 (601)
|+++.. +.|+. ..+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|+..++++ ...|
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 34543 466667778888899999999886655543 345667788888888999999999998877 3344
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 499 -DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 499 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
+...+..+...|...|++++|.+.++++.++.|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 567788888889999999999999999999999776553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-07 Score=81.93 Aligned_cols=170 Identities=10% Similarity=-0.028 Sum_probs=100.4
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHH
Q 045105 376 MYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 452 (601)
.....|+++++...|+.... .....+..+...+...|++++|+..|++..+. .|+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 34445556665555543331 12334555666666777777777777776663 2221100000 00000
Q ss_pred HHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045105 453 SEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530 (601)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 530 (601)
. .. .....+..+..+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|.+.++++.+..
T Consensus 83 ~---~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 83 K---KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp H---HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred H---HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0 00 01246677788888899999999888876 2334 67788888899999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCHHHHH-HHHHHHhhcCC
Q 045105 531 PNNTGNYVMLANLFAYAGRWSDLA-RTRQKMKDRRM 565 (601)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~-~~l~~~~~~~~ 565 (601)
|+++.++..++.++...|+.+++. ..+..|...+.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999988888 55666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=70.43 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=89.0
Q ss_pred cCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 466 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
.+...+..+...+...|++++|++.+++. ...| +...+..+...+...|++++|.+.++++.+..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34557788888999999999999999987 4455 678888899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCC
Q 045105 544 FAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 544 ~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+...|++++|.+.+++..+..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999877653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.4e-07 Score=72.08 Aligned_cols=94 Identities=7% Similarity=0.026 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-------hHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG-------NYVML 540 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 540 (601)
.+..+...+.+.|++++|++.|++. .+.| +...|..+...|...|++++|++.+++++++.|++.. ++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777777777777777765 3344 4666777777788888888888888888887776543 55667
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc
Q 045105 541 ANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 541 ~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.++...|++++|.+.+++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777788888888888776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.2e-05 Score=69.24 Aligned_cols=222 Identities=9% Similarity=-0.044 Sum_probs=162.0
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hh
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG--YDEEAIGMLFRMQAEGLEPNARTLSSVLPAC----AR 106 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~ 106 (601)
..+....++|+.+++.+.. ..|-+...|+.--.++...| ++++++++++.+.... +-+..+|+.--..+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3444456789999999998 55667788898888888888 9999999999998763 22333454433333 33
Q ss_pred c---CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH--HHHHHHhhcCC---CCchhHHHHHHHHHhcCC---
Q 045105 107 L---QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML--SALKIFSKFSI---KNEVSCNTIIVGYCENGN--- 175 (601)
Q Consensus 107 ~---~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~g~--- 175 (601)
. ++++++..+++.+.+.. +-+..+|+...-++.+.|.++ ++++.++++.. .|-.+|+.-...+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 4 67889999999998875 557778888888888888887 88888888763 356667766666666666
Q ss_pred ---HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhH-HHHHHHHHHHcC-CCCCChhhHHHHHHHhcccCCHHHH
Q 045105 176 ---VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE-AFSMFRDLLMRD-GIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 176 ---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
++++++.++.+.... +-|...|+-+-..+.+.|+... +..+..+..... .-..+...+..+...+.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888999998888775 4577888888888888887555 445665554311 1134566777777788888888888
Q ss_pred HHHHHHHHH
Q 045105 251 KEIHALAIA 259 (601)
Q Consensus 251 ~~~~~~~~~ 259 (601)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=70.35 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=71.4
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 467 SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
+...+..+...+...|++++|+..|++. ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3456666667777777777777777665 2233 4566777777777788888888888888888887777888888888
Q ss_pred HHcCCHHHHHHHHHHHhhcC
Q 045105 545 AYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 545 ~~~g~~~~A~~~l~~~~~~~ 564 (601)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 88888888888877776554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=73.43 Aligned_cols=124 Identities=8% Similarity=0.082 Sum_probs=97.1
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--h
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGG-CVSHGNL--E 517 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~g~~--~ 517 (601)
+...|++++|...++...... +.+...+..+...|...|++++|+..++++ ...| +...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 356788888988886555543 345678888899999999999999999887 2234 56677777777 7788988 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
+|...++++.+..|+++..+..++.+|...|++++|...++++.+..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999988776543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=67.66 Aligned_cols=95 Identities=13% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444555555666666666665554 1122 4555555566666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHhhcC
Q 045105 548 GRWSDLARTRQKMKDRR 564 (601)
Q Consensus 548 g~~~~A~~~l~~~~~~~ 564 (601)
|++++|.+.+++..+..
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 66666666666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=2e-06 Score=70.27 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=58.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
...+..+...+...|++++|++.+++. ...|+ ...|..+...|...|++++|.+.++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334455555556666666666666554 33444 4455555566666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhcC
Q 045105 543 LFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 543 ~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++...|++++|.+.+++..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666666666666665443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.4e-07 Score=72.13 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=82.0
Q ss_pred CccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 045105 430 RPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGAL 506 (601)
Q Consensus 430 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 506 (601)
.|+. ..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..+++. ...| +...+..+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4433 355566677778888888888886655543 345667777888888888888888888876 2344 56677788
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
...+...|++++|.+.++++.+..|+++.......
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88889999999999999999999887776554433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=7.2e-06 Score=76.09 Aligned_cols=160 Identities=6% Similarity=-0.020 Sum_probs=109.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcC-CCCCHh----hHHHHHHHHHhcCCcchHHHHHHHHHHhcCC-Cc----hHHHH
Q 045105 64 AVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNAR----TLSSVLPACARLQKLSLGKEFHGYITRNGFM-SN----PFVVN 133 (601)
Q Consensus 64 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~ 133 (601)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...++++.|...++...+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667778888888888888877642 122321 2334555566667888888888888774322 22 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC------C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-eeeh
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFSI------K----NEVSCNTIIVGYCENGNVAEARELFDQMEHL----GVQRG-IISW 198 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~ 198 (601)
.+..+|...|++++|...|++... . ...++..+...|.+.|++++|...+++.... +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888888888888888888877651 1 1235778888888999999998888877542 21121 4578
Q ss_pred HHHHHHHHhCCC-hhHHHHHHHHHHH
Q 045105 199 NSMISGYVDNSL-YDEAFSMFRDLLM 223 (601)
Q Consensus 199 ~~li~~~~~~~~-~~~a~~~~~~~~~ 223 (601)
..+..++.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888889999995 5899888887764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=74.95 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=35.0
Q ss_pred cCChHHHHH---HHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHH
Q 045105 380 CGSLKHARL---AYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKT 451 (601)
Q Consensus 380 ~g~~~~a~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~ 451 (601)
.|++++|.+ .+..........+..+...|...|++++|...+++..+. +..|. ..++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 344555544 332222223344555555555556666665555554431 11111 1244444455555555555
Q ss_pred HHHHH
Q 045105 452 GSEFF 456 (601)
Q Consensus 452 a~~~~ 456 (601)
|...+
T Consensus 85 A~~~~ 89 (203)
T 3gw4_A 85 ARRCF 89 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=75.18 Aligned_cols=120 Identities=10% Similarity=-0.050 Sum_probs=68.8
Q ss_pred CCCCCchhHHH---HHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcC----CCCCChhhHHHHHHHHhhcCCh
Q 045105 3 GKCGSLDDAKK---VFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLD----NETPNLVSWSAVIGGFTQNGYD 75 (601)
Q Consensus 3 ~~~g~~~~A~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~ 75 (601)
...|++++|++ .+..-+.....++..+...+...|++++|+..+++..+.. ..+....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777777 5544333345567777777777777777777777655411 1112234566667777777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHhhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 045105 76 EEAIGMLFRMQAE----GLEP--NARTLSSVLPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 76 ~~a~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (601)
++|.+.+++..+. +-.| ....+..+...+...|++++|...++...+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777665442 1111 123355555556666666666666666553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=69.15 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAPDS----VMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLANLFA 545 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 545 (601)
+...+...|++++|++.|+++ ...|+. ..+..+...+...|++++|...++++.+..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445556666666666666655 112322 355556666667777777777777777777766 555667777777
Q ss_pred HcCCHHHHHHHHHHHhhcC
Q 045105 546 YAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~~ 564 (601)
..|++++|...++++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 7777777777777666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=80.96 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=80.4
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...+..+...+.+.|++++|+..|+...+ ..+.+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44667778888889999999999999887 345578888889999999999999999999888752 335567778888
Q ss_pred HHHhcCCcchHHHHHHHHHHhc
Q 045105 103 ACARLQKLSLGKEFHGYITRNG 124 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g 124 (601)
++...|++++|...++...+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888899999999988887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-05 Score=75.01 Aligned_cols=162 Identities=10% Similarity=-0.073 Sum_probs=118.1
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHhcCC---CCCh------hhHHHHHHHHHHcCChhhHHHHHHHHHHCCC---Ccc--H
Q 045105 368 HIGTALVDMYAKCGSLKHARLAYKRIS---TPDL------VSQNAMLTAYAMHGHGKEGIAHFRRILASGF---RPD--H 433 (601)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~ 433 (601)
..+...+..+...|++++|...++... +... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344456777889999999999887543 1111 2234455667788999999999999876421 222 3
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhc-CCCcC-----chHHHHHHHHhhhcCChHHHHHHHHhC-CC------CC-C
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYY-DVKPS-----LKHYTCMVDLLSRAGELGEAYEFIKKI-PM------AP-D 499 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~~-~ 499 (601)
.+++.+...|...|++++|...++...+. ...|+ ..++..+..+|.+.|++++|++.+++. .. .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999554421 11122 257888999999999999999999876 11 11 1
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 045105 500 SVMWGALLGGCVSHGNLEFG-QIAADRLIEL 529 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 529 (601)
..++..+...|...|++++| ...++++.+.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888899999999999 7778888765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.36 E-value=9.9e-06 Score=63.62 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=83.7
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...|..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 456777778888888888888888888773 44567778888888888888888888888887753 345667777778
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR 140 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 140 (601)
.+...|+++.|...++.+.+.. +.+...+..+..++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 8888888888888888887764 334444544444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-06 Score=67.19 Aligned_cols=110 Identities=7% Similarity=-0.078 Sum_probs=77.4
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVS 512 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 512 (601)
.+......+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555666667777777777775544432 334566777777777788888887777766 3344 56677788888888
Q ss_pred cCChhHHHHHHHHHHhcC------CCCCchHHHHHHHHH
Q 045105 513 HGNLEFGQIAADRLIELE------PNNTGNYVMLANLFA 545 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 545 (601)
.|++++|.+.++++.+.+ |+++.+...+..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 899999999999999888 766666666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=7e-06 Score=63.76 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=74.7
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 511 (601)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++. ...| +...+..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555556666666666666664444432 224556666667777777777777777665 2233 5667777888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
..|++++|.+.++++.+..|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999888877777766553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=77.37 Aligned_cols=192 Identities=8% Similarity=-0.092 Sum_probs=134.9
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHH-------HHHHHhcCChHHHHHHHhcCCC--C-------C----------
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTAL-------VDMYAKCGSLKHARLAYKRIST--P-------D---------- 397 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~--~-------~---------- 397 (601)
..++...|.+.|..+.+.... ....|..+ ...+.+.++..++...+..... | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 579999999999999987532 34455555 3444444444454444443331 1 1
Q ss_pred -----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC--chH
Q 045105 398 -----LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS--LKH 470 (601)
Q Consensus 398 -----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 470 (601)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 112334567788999999999999999875 4655455555667889999999999996433321 111 236
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKIPMA---PD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
+..+..++...|++++|+..|++.... |. ...+.....++.+.|+.++|...|+++.+.+|+ +.+...|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777889999999999999999988212 43 335666777888999999999999999999996 5544444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.3e-06 Score=69.85 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=59.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+..+...+.+.|++++|++.|++. ...| +...|..+...|...|++++|+..++++++++|+++..+..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555556666666666666666655 2233 455566666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|++++|.+.+++..+..
T Consensus 92 ~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 666666666666655443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=67.20 Aligned_cols=127 Identities=6% Similarity=-0.091 Sum_probs=85.3
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
..+..+...+...|++++|...|+...+ ..+.+...|..+..++...|++++|.+.+++..+.. +.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3566677777788888888888888777 345567778888888888888888888888877653 3345667777777
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHH--HHHHHHHhcCCHHHHHHHHhh
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVN--GLVDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~ 154 (601)
+...|++++|...++...+.. +.+...+. .+...+...|++++|.+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 777788888888887777654 22333332 223334455666666555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=9.9e-06 Score=64.25 Aligned_cols=119 Identities=9% Similarity=-0.046 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...+..+...+...|++++|+..|+...+ ..+.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44667777888888899999998888877 345567788888888888889999888888887752 334667777778
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDM 145 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 145 (601)
.+...|+++.|...++...+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888887764 33556666666666666553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.2e-07 Score=69.67 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=58.4
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PM---AP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
.|++++|+..|++. .. .| +...+..+...|...|++++|.+.++++.+..|+++.++..++.++...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777665 33 23 345666777777777888888888888888888777788888888888888888888
Q ss_pred HHHHHhhcC
Q 045105 556 TRQKMKDRR 564 (601)
Q Consensus 556 ~l~~~~~~~ 564 (601)
.+++..+..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 877776554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=68.74 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIEL-------EPNNTGNY----VMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
..|..+..++.+.|++++|+..+++++++ +|++...| +..+.++...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 89888888 88999999999999999988887644
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=82.08 Aligned_cols=138 Identities=17% Similarity=0.037 Sum_probs=96.1
Q ss_pred CchhHHHHHhhCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC---------------hhhHHHHHHH
Q 045105 7 SLDDAKKVFKMMPE--R-DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN---------------LVSWSAVIGG 68 (601)
Q Consensus 7 ~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---------------~~~~~~li~~ 68 (601)
++++|++.|+...+ | +...|..+...+.+.|++++|+..|++..+. .+.+ ...|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555543 2 3456777888888889999999988888774 2223 4677778888
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHH
Q 045105 69 FTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSA 148 (601)
Q Consensus 69 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 148 (601)
|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|+..++.. +.+...+..+..++.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877653 3355667777777777778888877777777764 33455666666667666666666
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-06 Score=82.46 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=77.6
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|...++++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357778888999999999999999887 3344 67788899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHH-HHHHhhc
Q 045105 546 YAGRWSDLART-RQKMKDR 563 (601)
Q Consensus 546 ~~g~~~~A~~~-l~~~~~~ 563 (601)
..|++++|.+. +++|.++
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 99999988754 6666444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-06 Score=71.24 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3455555555556666666666666666666556666666666666666666666655555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=7.4e-06 Score=65.86 Aligned_cols=100 Identities=6% Similarity=-0.097 Sum_probs=71.6
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGG 509 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 509 (601)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|+..+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44566666677777777777777775544433 234556777777777888888887777766 2234 56677888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC
Q 045105 510 CVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+...|+++.|...++++.+..|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888999999999988888776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00013 Score=67.77 Aligned_cols=218 Identities=12% Similarity=0.035 Sum_probs=151.4
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHHc-C-Chhh
Q 045105 343 SSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG-SLKHARLAYKRIS---TPDLVSQNAMLTAYAMH-G-HGKE 416 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~-~-~~~~ 416 (601)
.+.+..++|..+.+.+...+.. +..+++.--..+...| .++++..+++.+. ..+...|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445557899999999887643 4455555555566677 5999999999887 45666788777777776 7 8899
Q ss_pred HHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH--------HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCC-----
Q 045105 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIK--------TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE----- 483 (601)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 483 (601)
++.+++++.+.. +-|...|+.-.-.+.+.|.++ ++++.++.+.+.. +-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 999999999863 345567766555555555666 8888887666654 3456678777777777776
Q ss_pred --hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhcC------CCC
Q 045105 484 --LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNL--------------------EFGQIAADRLIELE------PNN 533 (601)
Q Consensus 484 --~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~ 533 (601)
++++++.++++ ...| |...|+-+-..+.+.|.. ....+....+.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888766 4455 677887777777766653 22223332332222 346
Q ss_pred CchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 534 TGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.++..++.+|...|+.++|.+.++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 678888999999999999999999998643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.5e-06 Score=66.35 Aligned_cols=109 Identities=7% Similarity=0.026 Sum_probs=63.2
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC----CC----HHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA----PD----SVMWG 504 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----~~----~~~~~ 504 (601)
..+..+...+...|++++|...++...... +.+...+..+...|...|++++|...++++ ... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777775444432 234455566666666666666666666655 111 11 44555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
.+...+...|++++|.+.++++.+..| ++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 566666666666666666666666666 454444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=4.9e-06 Score=72.04 Aligned_cols=143 Identities=11% Similarity=-0.040 Sum_probs=90.7
Q ss_pred CCCchhHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC--------------hhhHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN--------------LVSWSAVIG 67 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~--------------~~~~~~li~ 67 (601)
.|++++|.+.|+...+. ....+..+...+.+.|++++|+..|++..+.....|+ ...|..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 46666666666654432 3345667777888888999999888888773211121 166777777
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHH
Q 045105 68 GFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLS 147 (601)
Q Consensus 68 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 147 (601)
+|...|++++|+..+++..+.. +.+...+..+..++...|+++.|...|+...+.. +.+...+..+..++...++.++
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777652 3355667777777777788888888777777653 3345566666666655555554
Q ss_pred HH
Q 045105 148 AL 149 (601)
Q Consensus 148 a~ 149 (601)
+.
T Consensus 175 ~~ 176 (198)
T 2fbn_A 175 KD 176 (198)
T ss_dssp --
T ss_pred HH
Confidence 44
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.8e-06 Score=83.60 Aligned_cols=119 Identities=7% Similarity=0.039 Sum_probs=92.2
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 517 (601)
...+.+.|++++|...++...+.. +.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344567788888888886555542 334667888888888889999998888877 3445 5678888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCHHHHHHHHHH
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANL--FAYAGRWSDLARTRQK 559 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~l~~ 559 (601)
+|.+.++++.+..|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999998888 8889999999999883
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-05 Score=63.76 Aligned_cols=108 Identities=12% Similarity=0.001 Sum_probs=68.7
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLG 508 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 508 (601)
.+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|+..+++. ...| +...+..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 4444444555555555555555443332 232 345555666666667777776666655 2233 4566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
.+...|++++|...++++.+..|+++..+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888899999999999988888777776666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=77.28 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=78.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|.+.++++.++.|++..++..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457788888999999999999999887 4556 57788889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHH
Q 045105 546 YAGRWSDLART 556 (601)
Q Consensus 546 ~~g~~~~A~~~ 556 (601)
..|+.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.6e-06 Score=68.23 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------CCc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKIP----MAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN------NTG 535 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 535 (601)
++..+...+...|++++|.+.+++.- ..+ ....+..+...+...|++++|.+.++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555556666666666555430 011 1345666777778888888888888888765321 235
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 536 NYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.+..++.++...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677889999999999999999887754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.7e-05 Score=58.86 Aligned_cols=100 Identities=11% Similarity=-0.041 Sum_probs=80.6
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC--CHhhHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEP--NARTLSS 99 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ 99 (601)
+...+..+...+...|++++|...|+...+ ..+.+...|..+...+...|++++|.+.+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 456777788888889999999999998887 345567788888888999999999999999888753 22 4667778
Q ss_pred HHHHHHhc-CCcchHHHHHHHHHHhc
Q 045105 100 VLPACARL-QKLSLGKEFHGYITRNG 124 (601)
Q Consensus 100 ll~~~~~~-~~~~~a~~~~~~~~~~g 124 (601)
+...+... |++++|.+.++...+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888887765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00019 Score=66.38 Aligned_cols=218 Identities=11% Similarity=-0.009 Sum_probs=140.8
Q ss_pred CCch-hhHHHHHHHHHHhCCCCchhHHhH---HHHHHHhcC-------ChHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 045105 345 LATM-ERGKQVHAYAIRCGYDSDVHIGTA---LVDMYAKCG-------SLKHARLAYKRIS---TPDLVSQNAMLTAYAM 410 (601)
Q Consensus 345 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g-------~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~ 410 (601)
.|.+ ++|......+...+.. +..+++. ++....+.. .++++..+++.+. +.+..+|+.-...+..
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 3443 3667777777654422 2222322 222222211 1566777777665 4566778777777777
Q ss_pred cCC--hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCc-hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc------
Q 045105 411 HGH--GKEGIAHFRRILASGFRPDHISFLSALSACVHAGS-IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA------ 481 (601)
Q Consensus 411 ~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 481 (601)
.++ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.+..+.+.. +-|...|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC--
T ss_pred cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccc
Confidence 774 789999999998864 4455677666666667777 588888886666654 34555666665555444
Q ss_pred --------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCCchHHHH
Q 045105 482 --------GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH-----------GNLEFGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 482 --------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
+.++++++.+++. ...| |...|+-+-..+.+. +.++++++.++++.++.|++...+..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 4577888888776 3355 667777666665554 357899999999999999876555555
Q ss_pred HHHHH---HcCCHHHHHHHHHHHhhcCC
Q 045105 541 ANLFA---YAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 541 ~~~~~---~~g~~~~A~~~l~~~~~~~~ 565 (601)
+.+.. ..|..++....+.++.+-++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 43322 35778888888888876653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00057 Score=63.55 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=120.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG-YDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
++.+.....+.+..++|+++++.+.. ..+-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34344444556677889999999988 45667788888777777777 5899999999998763 33455666655555
Q ss_pred Hhc-C-CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH--------HHHHHHhhcC---CCCchhHHHHHHHHH
Q 045105 105 ARL-Q-KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML--------SALKIFSKFS---IKNEVSCNTIIVGYC 171 (601)
Q Consensus 105 ~~~-~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~---~~~~~~~~~li~~~~ 171 (601)
... + ++++++++++.+.+.. +-+..+|+...-++.+.|.++ ++++.++++. ..|..+|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 555 5 7788888888887654 445667766555555555554 6777766655 235566776666666
Q ss_pred hcCC-------HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCC
Q 045105 172 ENGN-------VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSL 210 (601)
Q Consensus 172 ~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 210 (601)
+.+. ++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6665 577777777776654 3466666665555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-06 Score=66.69 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=57.4
Q ss_pred cCchHHHHHHHHHHHhcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 045105 446 AGSIKTGSEFFDLMAYYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
.|++++|+..|+...+.+ -+.+...+..+..+|...|++++|+..+++. ...| +...+..+...+...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666665444432 1223445666666677777777777777665 2234 45667777777788888888888
Q ss_pred HHHHHHhcCCCCCchHH
Q 045105 522 AADRLIELEPNNTGNYV 538 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~ 538 (601)
.++++.+..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 88888888887665443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.3e-05 Score=60.50 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=67.8
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCc---hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSL---KHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGC 510 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~ 510 (601)
+...+...|++++|...++...+... .+. ..+..+..++.+.|++++|+..++++ ...|+ ...+..+...+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34455566677777777655444321 122 35566667777777777777777665 22332 45566777788
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
...|++++|...++++.+..|+++........+
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 888999999999999999888766555544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=63.09 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=62.4
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 045105 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH 513 (601)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 513 (601)
+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|+..+++. ...| +...+..+...+...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3344556666777777777775544432 234556666777777777777777777766 3344 456677777778888
Q ss_pred CChhHHHHHHHHHHhcCCCCC
Q 045105 514 GNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~ 534 (601)
|++++|...++++.+.+|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888877543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.2e-06 Score=78.62 Aligned_cols=151 Identities=7% Similarity=-0.038 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
...+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666777777888899999988888774 455432 223344444433321 1367778888
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCHHHHH
Q 045105 478 LSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF-AYAGRWSDLA 554 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 554 (601)
|.+.|++++|+..+++. ...| +...|..+..+|...|++++|.+.++++.+++|+++.++..+..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 3345 6778888999999999999999999999999999998888888874 4567788888
Q ss_pred HHHHHHhhcCCcc
Q 045105 555 RTRQKMKDRRMHK 567 (601)
Q Consensus 555 ~~l~~~~~~~~~~ 567 (601)
..+++|.+..+..
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 8888887666443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=63.59 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=47.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------CchHHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN-------TGNYVMLA 541 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~ 541 (601)
+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+..|++ +.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 444445555555555555555544 112 234444555555555555555555555555554433 44555555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc
Q 045105 542 NLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.++...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.1e-05 Score=59.95 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCC----HhhHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG--LEPN----ARTLS 98 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~ 98 (601)
++..+...+.+.|++++|++.|++..+ ..|.+...|+.+..+|...|++++|++.+++..+.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 566788889999999999999999888 456678889999999999999999999999887641 1111 13566
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHH
Q 045105 99 SVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVN 133 (601)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 133 (601)
.+..++...|+++.|.+.|+..++. .|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6667777888888888888887764 35554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.5e-05 Score=56.49 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCC
Q 045105 498 PDSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 570 (601)
+++..+..+..++...++ .++|...++++.+.+|+++.+...++..+.+.|++++|...|+++.+..+. +|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 467778888888765554 799999999999999999999999999999999999999999999998876 555
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=61.02 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=55.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 486 EAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 486 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+|++.+++. ...| +...+..+...|...|++++|...++++.+.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555544 3334 55667777777777778888888888888777777777777788888888888888777776554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.8e-05 Score=75.03 Aligned_cols=163 Identities=7% Similarity=-0.165 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHH----hHHHHHHHHhccCchHHHHHHHHHHHh----cCCCcC-ch
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHI----SFLSALSACVHAGSIKTGSEFFDLMAY----YDVKPS-LK 469 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~ 469 (601)
.+..+...|...|++++|.+++.++.... -.++.. ..+.+-..+...|++++|..++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35677888899999999999888876521 112221 233333445567888999888854432 222222 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---C----C
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-----P--MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN---N----T 534 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 534 (601)
++..+...|...|++++|..+++++ . ..+ ...++..++..|...|++++|...++++....|. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778889999999999999998776 1 122 2456778888899999999999999998876332 2 1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677777889999999998777653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=66.70 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=62.4
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT-GNYVMLANLF 544 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 544 (601)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|...++++.+++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 356777888888999999999988877 3345 577888899999999999999999999999999877 4455555444
Q ss_pred H
Q 045105 545 A 545 (601)
Q Consensus 545 ~ 545 (601)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.1e-05 Score=58.16 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+...|..+...|...|++++|++.++++.+.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888999999999999999999999999999999999999999999999999887654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=72.34 Aligned_cols=193 Identities=9% Similarity=-0.093 Sum_probs=112.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCh---------------hhHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNL---------------VSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPN 93 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 93 (601)
...+.+.|++++|++.|..+.+......+. ..+..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455778899999999999988753222221 13677888999999999999998887653 11122
Q ss_pred Hhh----HHHHHHHHHhcCCcchHHHHHHHHHHh----cCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcC----CC--
Q 045105 94 ART----LSSVLPACARLQKLSLGKEFHGYITRN----GFMS-NPFVVNGLVDVYRRCGDMLSALKIFSKFS----IK-- 158 (601)
Q Consensus 94 ~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-- 158 (601)
..+ .+.+-..+...|+++.+..+++..... +..+ -..++..+...|...|++++|..++++.. ..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 211 222222333457778888877766542 2222 23466667777777777777777776543 00
Q ss_pred ---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC-C-C--eeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 159 ---NEVSCNTIIVGYCENGNVAEARELFDQMEHL--GVQ-R-G--IISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 159 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-~-~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
...++..++..|...|++++|..+++..... .+. | . ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1234555666666666666666666555421 111 1 0 1223334444455556666655555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-06 Score=65.15 Aligned_cols=92 Identities=10% Similarity=0.019 Sum_probs=71.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNYVM 539 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 539 (601)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|.+.++++.+..|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445667778888888888888888776 2344 67778888888999999999999999999999987 667777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 045105 540 LANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 540 l~~~~~~~g~~~~A~~~l~~ 559 (601)
++.++...|++++|.+.+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888877766655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-05 Score=63.05 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI--------PMAPD-SVMW----GALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
.|..+..++.+.|++++|+..+++. ++.|+ ...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666665544 23774 4567 888889999999999999999999999998887
Q ss_pred HHHHHHH
Q 045105 537 YVMLANL 543 (601)
Q Consensus 537 ~~~l~~~ 543 (601)
...+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 7666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.8e-05 Score=72.65 Aligned_cols=150 Identities=10% Similarity=0.031 Sum_probs=79.2
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST--PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
...+..+...+.+.|++++|...|++... |+... +...|+..++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44566778889999999999999988663 33221 122233333332221 136777888889
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHHH
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGG-CVSHGNLEFGQI 521 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~a~~ 521 (601)
+.|++++|+..++...... +.+...|..+..+|...|++++|+..|+++ ...|+ ...+..+... ....+..+.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996666543 345678888999999999999999999988 45564 3444444444 234567788889
Q ss_pred HHHHHHhcCCCCC
Q 045105 522 AADRLIELEPNNT 534 (601)
Q Consensus 522 ~~~~~~~~~p~~~ 534 (601)
.+.++.+..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999988654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.90 E-value=5.2e-05 Score=75.43 Aligned_cols=118 Identities=8% Similarity=0.028 Sum_probs=78.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch
Q 045105 373 LVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (601)
+...+.+.|++++|...|++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445667788888888887665 3456677778888888888888888888888752 33455777777788888888
Q ss_pred HHHHHHHHHHHhcCCCcCchHHHHHHHH--hhhcCChHHHHHHHH
Q 045105 450 KTGSEFFDLMAYYDVKPSLKHYTCMVDL--LSRAGELGEAYEFIK 492 (601)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 492 (601)
++|.+.++...+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888885555542 2233445555555 677788888888777
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00035 Score=70.83 Aligned_cols=169 Identities=9% Similarity=-0.060 Sum_probs=130.9
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC----------hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccC-
Q 045105 382 SLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGH----------GKEGIAHFRRILASGFRPDHISFLSALSACVHAG- 447 (601)
Q Consensus 382 ~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 447 (601)
..++|...++.+. +.+...|+.--..+...|+ +++++..++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777766 3444567766666666666 899999999999853 334567877777788888
Q ss_pred -chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 045105 448 -SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG-ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH---------- 513 (601)
Q Consensus 448 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---------- 513 (601)
++++++..++.+.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6699999997777765 346677887777788888 899999999888 4456 677787777776653
Q ss_pred ----CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 514 ----GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 514 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
+.++++.+.+++++..+|++..+|..+.+++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888555
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.7e-05 Score=55.31 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=56.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|...++++.+.+|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45555666667777777777777665 2233 456677777777788888888888888888888777777777777765
Q ss_pred cC
Q 045105 547 AG 548 (601)
Q Consensus 547 ~g 548 (601)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=77.90 Aligned_cols=139 Identities=11% Similarity=0.010 Sum_probs=84.2
Q ss_pred CchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC---------------hhhHHHHHHH
Q 045105 7 SLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN---------------LVSWSAVIGG 68 (601)
Q Consensus 7 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---------------~~~~~~li~~ 68 (601)
++++|++.|+...+ .....|..+...+.+.|++++|+..|++..+. .+.+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555443 23346777778888888888888888887763 2222 4566667777
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHH
Q 045105 69 FTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSA 148 (601)
Q Consensus 69 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 148 (601)
|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|+..++.. +.+...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766642 2345556666666666666666666666666543 22334555555555555555544
Q ss_pred H
Q 045105 149 L 149 (601)
Q Consensus 149 ~ 149 (601)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.80 E-value=4.7e-05 Score=72.83 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+...|..+...|.+.|++++|++.++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=60.70 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCC-cc----HHhHHHHHHHHhccCchHHHHHHHHHHHhcC----CCc-Cch
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFR-PD----HISFLSALSACVHAGSIKTGSEFFDLMAYYD----VKP-SLK 469 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~ 469 (601)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...... .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665542100 11 1255556666677777777777774433211 111 133
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-------PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 530 (601)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|.+.++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777778888777777655 1111 13456667777888899999999988887763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.012 Score=54.43 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=126.5
Q ss_pred hcCCh-HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC----------hHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 35 ANGLV-LEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY----------DEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 35 ~~~~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
+.|.+ ++|+.+++.+.. ..|-+...|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44544 468888888877 445556666654444433332 467777777776642 3345556555555
Q ss_pred HHhcCC--cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC-HHHHHHHHhhcC---CCCchhHHHHHHHHHhc----
Q 045105 104 CARLQK--LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD-MLSALKIFSKFS---IKNEVSCNTIIVGYCEN---- 173 (601)
Q Consensus 104 ~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~li~~~~~~---- 173 (601)
+...++ ++.+..+++.+.+.. +-+..+|+...-++...|. ++++++.++.+. ..|..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 555553 667777777777764 4466677766666666676 477777776665 23555565554444433
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhC-----------CChhHHHHHHHHHHHcCCCCCChh
Q 045105 174 ----------GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDN-----------SLYDEAFSMFRDLLMRDGIEPTSF 232 (601)
Q Consensus 174 ----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~ 232 (601)
+.++++++.++...... +-|..+|+-+--.+.+. +.++++++.++++.+ ..|+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle---~~pd~- 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE---LEPEN- 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH---HCTTC-
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh---hCccc-
Confidence 34677777777777654 44566665443333333 346677777777776 45654
Q ss_pred hHHH-----HHHHhcccCCHHHHHHHHHHHHHc
Q 045105 233 TFGS-----VLIACADMNSLRKGKEIHALAIAL 260 (601)
Q Consensus 233 ~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~ 260 (601)
.+.. ++......+..+++...+..+.+.
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 2221 112222345556666666666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=8.2e-05 Score=73.48 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=90.8
Q ss_pred HHhccCchHHHHHHHHHHHh---cCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCCC-HHHHH
Q 045105 442 ACVHAGSIKTGSEFFDLMAY---YDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAPD-SVMWG 504 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~ 504 (601)
.+...|++++|+.+++...+ .-+.|+ ..+++.|..+|...|++++|+.++++. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567788888777743332 222222 346777888888888888888877665 2 2343 35688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIEL-----EPNNTG---NYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.|...|...|++++|+.+++++.+. +|++|. +...+..++...|++++|+..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999874 677654 45678888899999999999999998755
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.9e-05 Score=63.61 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=59.0
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 480 RAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGN----------LEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
+.+.+++|++.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444555555555544 2233 44455545555554443 55888888888888888888888888888876
Q ss_pred C-----------CHHHHHHHHHHHhhcCC
Q 045105 548 G-----------RWSDLARTRQKMKDRRM 565 (601)
Q Consensus 548 g-----------~~~~A~~~l~~~~~~~~ 565 (601)
| ++++|.+.+++..+..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 4 78888888888877664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=56.20 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+...|..+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|.+.+++..+..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567788888999999999999999999999999999999999999999999999999999987664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00046 Score=55.21 Aligned_cols=112 Identities=8% Similarity=-0.032 Sum_probs=74.4
Q ss_pred CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 045105 447 GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIA 522 (601)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 522 (601)
+++++|..+|+...+.| .|+ .. |...|...+..++|++.|++.-..-+...+..|...|.. .+|+++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34566666665555554 222 22 555566666666677777665323455666666666666 6778888888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHH----cCCHHHHHHHHHHHhhcCC
Q 045105 523 ADRLIELEPNNTGNYVMLANLFAY----AGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~~ 565 (601)
++++.+. .++.....|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888776 367778888888887 7888888888888777764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.59 E-value=1.7e-05 Score=74.79 Aligned_cols=242 Identities=16% Similarity=0.162 Sum_probs=165.2
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
.+.+|..|..+....+++.+|++.|-+ ..|+..|..+|.+..+.|.+++-+..+.-.++..-.| ..=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHH
Confidence 456889999999999999888876633 3567788899999999999999999888777653333 4445788
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC------------------------C
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS------------------------I 157 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~ 157 (601)
-+|++.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+. .
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999988877555432 4666666677777888888888888887664 2
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 045105 158 KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237 (601)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 237 (601)
.++.||..+-.+|+..+.+.-|.-.--.+.- ...-...++..|-..|.+++-+.+++.-.. --......|+-+
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 2677899999999999998887665444432 122234467778889999999999986542 112333445555
Q ss_pred HHHhcccCCHHHHHHHHHHHHHc-CCC------CchhHHHHHHHHHHhcCCHHHHHH
Q 045105 238 LIACADMNSLRKGKEIHALAIAL-GLQ------SDTFVGGALVEMYCRYQDLVAAQM 287 (601)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~~ 287 (601)
.-.|++- +.++..+-++....+ +++ -....|.-++-.|++..+++.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4444443 333333333322111 111 134577888888888888887754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=51.74 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+...+..+...+...|++++|...++++.+..|+++.++..++.++...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355777788889999999999999999999999999999999999999999999999999988765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0022 Score=65.04 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=121.0
Q ss_pred HHcCC-hhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCc----------hHHHHHHHHHHHhcCCCcCchHHHHHHH
Q 045105 409 AMHGH-GKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGS----------IKTGSEFFDLMAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 409 ~~~~~-~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (601)
.+.|. .++|+..++++... .|+. ..|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-..
T Consensus 39 ~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w 115 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 115 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444 56889999999985 6655 456655555666666 899999997776654 345668888888
Q ss_pred HhhhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc----
Q 045105 477 LLSRAG--ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHG-NLEFGQIAADRLIELEPNNTGNYVMLANLFAYA---- 547 (601)
Q Consensus 477 ~~~~~g--~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 547 (601)
++.+.| +++++++.++++ ...| +...|+.-...+.+.| .++++.+.++++++.+|.|..+|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888889 679999999988 3344 7888888888888888 899999999999999999999999999998874
Q ss_pred ----------CCHHHHHHHHHHHhhcC
Q 045105 548 ----------GRWSDLARTRQKMKDRR 564 (601)
Q Consensus 548 ----------g~~~~A~~~l~~~~~~~ 564 (601)
++++++.+.+++.....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC
Confidence 66789999888876654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00063 Score=50.59 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=57.0
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAP-DSV-MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRW 550 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (601)
....+.+.|++++|++.++++ ...| +.. .|..+...|...|++++|.+.++++.+.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888876 3344 455 77777788888888888888888888888877766532 455
Q ss_pred HHHHHHHHHH
Q 045105 551 SDLARTRQKM 560 (601)
Q Consensus 551 ~~A~~~l~~~ 560 (601)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00032 Score=56.47 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=36.4
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCC
Q 045105 484 LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH-----------GNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 484 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+++|+..|++. .+.| +...|..+..+|... |++++|++.|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666655 3444 445666666666655 589999999999999999653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0044 Score=49.42 Aligned_cols=111 Identities=10% Similarity=-0.080 Sum_probs=87.0
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCChHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGELGEA 487 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 487 (601)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|+...+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998887 44444 6666777778888999997766654 45667778888877 7899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 045105 488 YEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELE 530 (601)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 530 (601)
++.|++.-..-++..+..|...|.. .+|.++|.+.++++.+..
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999887434567777788888887 789999999999998875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0021 Score=49.34 Aligned_cols=61 Identities=13% Similarity=-0.008 Sum_probs=31.2
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQ 86 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 86 (601)
..+..+...+...|++++|+..|+...+ ..+.+...|..+..+|...|++++|...|++..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555554 223344455555555555555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00053 Score=51.01 Aligned_cols=59 Identities=17% Similarity=0.370 Sum_probs=42.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCc-hHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTG-NYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...+...|++++|.+.++++.+..|+++. .+..++.+|...|++++|.+.+++..+..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34556667777777777777777777777 777777777777777777777777766553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0015 Score=64.55 Aligned_cols=131 Identities=9% Similarity=-0.017 Sum_probs=63.9
Q ss_pred HhhcCChHHHHHHHHHHHHc---CC---CC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHh-----cC-CC-chHHHHH
Q 045105 69 FTQNGYDEEAIGMLFRMQAE---GL---EP-NARTLSSVLPACARLQKLSLGKEFHGYITRN-----GF-MS-NPFVVNG 134 (601)
Q Consensus 69 ~~~~~~~~~a~~~~~~m~~~---~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ 134 (601)
+..+|++++|+.++++..+. -+ .| ...+++.|...|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777766665432 01 11 1235566666666666666666666555432 11 11 1234444
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
|...|...|++++|+.++++ |+++++......-+....+.+.+-.++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~------------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICK------------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554442 222222222111111223344555566666677777
Q ss_pred HHHHHHHHH
Q 045105 215 FSMFRDLLM 223 (601)
Q Consensus 215 ~~~~~~~~~ 223 (601)
..+|..+..
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00072 Score=65.60 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=75.7
Q ss_pred hcCChHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCC---chHHHHH
Q 045105 480 RAGELGEAYEFIKKI--------P-MAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIEL-----EPNNT---GNYVMLA 541 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 541 (601)
..|++++|+.++++. + ..|+ ..+++.|..+|...|++++|+.+++++++. .|++| .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777654 1 1232 357888899999999999999999998874 45544 5788899
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCCceeeeecCCCCCCchhhhhhhc
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTII 600 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (601)
.+|..+|++++|..++++..+.... +....||...+++..|
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHH
Confidence 9999999999999999988654321 1244577777777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0023 Score=56.79 Aligned_cols=88 Identities=11% Similarity=0.192 Sum_probs=70.8
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCC-CchHHHHHHHHHHc-CCHHH
Q 045105 484 LGEAYEFIKKI-PMAPD---SVMWGALLGGCVS-----HGNLEFGQIAADRLIELEPNN-TGNYVMLANLFAYA-GRWSD 552 (601)
Q Consensus 484 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 552 (601)
..+|...+++. .+.|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..++...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 44565 5678888888887 499999999999999999974 89999999999885 99999
Q ss_pred HHHHHHHHhhcCCccCCCc
Q 045105 553 LARTRQKMKDRRMHKSPGC 571 (601)
Q Consensus 553 A~~~l~~~~~~~~~~~~~~ 571 (601)
|.+.+++.....++.+|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999999888876774
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0025 Score=47.44 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=50.9
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
+...+..+..+|.+.|++++|+..|+...+. .+.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777888888888888888888888873 455667888888888888888888888887764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=63.78 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHhhhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCC---chH
Q 045105 476 DLLSRAGELGEAYEFIKKI-P-----MAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIEL-----EPNNT---GNY 537 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~-----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 537 (601)
..+.+.|++++|+.++++. . +.|+ ..+++.+..+|...|++++|+..++++++. .|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344667777777776554 0 1222 346777777888888888888888887764 34444 467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
..|+.+|..+|++++|..++++..+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 77888888888888888888877643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.087 Score=40.18 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=100.3
Q ss_pred HHHHHH--HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh
Q 045105 402 NAMLTA--YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479 (601)
Q Consensus 402 ~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (601)
..|+.+ +.-.|..++..++..+..+. .+..-|+.+|--....-+-+-..++++.+-+ -.|. .
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s 72 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------D 72 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------G
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------H
Confidence 334443 44568888888988888774 2445566666655566565666666654322 1221 2
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
.+|+......-+-.++ .+..-++..+......|..|.-.+++..+....|.+|..+..++.+|.+.|+..+|.+++++
T Consensus 73 ~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3445555554444443 23334556677888899999999999987666666899999999999999999999999999
Q ss_pred HhhcCCc
Q 045105 560 MKDRRMH 566 (601)
Q Consensus 560 ~~~~~~~ 566 (601)
.=++|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 9999975
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.034 Score=51.68 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=29.0
Q ss_pred CCChhhHHHHHHHHH--HcC---ChhhHHHHHHHHHHCCCCccH-HhHHHHHHHH
Q 045105 395 TPDLVSQNAMLTAYA--MHG---HGKEGIAHFRRILASGFRPDH-ISFLSALSAC 443 (601)
Q Consensus 395 ~~~~~~~~~ll~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~ 443 (601)
..+...|...+.+.. ..+ ...+|..+|++.++. .|+. ..|..+.-++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 456677777776643 333 357889999999885 6653 4454444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.014 Score=54.26 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=91.3
Q ss_pred CCccHHhHHHHHHHHh--cc---CchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhh---hcC-C-------hHHHHHHH
Q 045105 429 FRPDHISFLSALSACV--HA---GSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLS---RAG-E-------LGEAYEFI 491 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---~~g-~-------~~~A~~~~ 491 (601)
.+.+...|...+++.. .. ....+|..+|+...+. .|+ ...|..+..+|. ..+ . ...+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3556667777776543 33 3457899999766654 454 234444444432 111 1 11222222
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 492 KKIPM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 492 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..+.. ..++.++.++...+...|++++|...++++.+++| +...|..++.++.-.|++++|.+.+++.....+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23322 34778888888778778999999999999999997 677888999999999999999999998877664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.57 E-value=7.9e-05 Score=70.40 Aligned_cols=204 Identities=12% Similarity=0.154 Sum_probs=141.2
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHH
Q 045105 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVD 137 (601)
Q Consensus 58 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 137 (601)
....|..|..+....+...+|++.|-+. -|...|..++.++.+.|.++.....+....+..- ++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3467889999999999998888766332 2566789999999999999999999887776643 3445568999
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCCeee
Q 045105 138 VYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLG--------------------VQRGIIS 197 (601)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------~~~~~~~ 197 (601)
+|++.++..+.++++. .||..-...+..-|...|.++.|.-+|..+.... -..++.|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999998766554433 4666667777777888888877776665543211 0246778
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 045105 198 WNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYC 277 (601)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (601)
|-.+-.+|...+.+.-|.-+--.+.- .......++..|-..|.+++...+++.-.... +....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 88888888888888777655544442 11222334555777788887777776655221 345567777777777
Q ss_pred hc
Q 045105 278 RY 279 (601)
Q Consensus 278 ~~ 279 (601)
+.
T Consensus 275 KY 276 (624)
T 3lvg_A 275 KF 276 (624)
T ss_dssp SS
T ss_pred hc
Confidence 65
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.013 Score=56.80 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=63.6
Q ss_pred ccCchHHHHHHHHHHHh---cCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCCC-HHHHHHHH
Q 045105 445 HAGSIKTGSEFFDLMAY---YDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAPD-SVMWGALL 507 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~ 507 (601)
..|++++|..+++.... .-+.|+ ..+++.|..+|...|++++|+.++++. | ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777743332 222333 346777888888888888888877665 2 2343 34678888
Q ss_pred HHHHhcCChhHHHHHHHHHHhc-----CCCCCchH
Q 045105 508 GGCVSHGNLEFGQIAADRLIEL-----EPNNTGNY 537 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 537 (601)
..|...|++++|+.+++++.+. +|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 8899999999999999988874 66666443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.019 Score=55.75 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=67.7
Q ss_pred HHHHhccCchHHHHHHHHHHHhc---CCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCCC-HHH
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYY---DVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAPD-SVM 502 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~ 502 (601)
+..+.+.|++++|..+++...+. -+.|+ ..+++.|..+|...|++++|+.++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667778887777554432 12232 346777778888888888888877665 2 2343 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCCchHH
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIEL-----EPNNTGNYV 538 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 538 (601)
++.|...|...|++++|+..++++.+. +|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 778888899999999999999998874 677665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.25 Score=52.71 Aligned_cols=131 Identities=14% Similarity=0.007 Sum_probs=79.1
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChh
Q 045105 336 GIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 336 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 415 (601)
..++..+.+.|.++.|.++.+. +. .-.......|++++|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4455556666777777665421 11 11334566788888888877664 4578888888888888888
Q ss_pred hHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC
Q 045105 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (601)
.|.+.|.++.. |..+...+...|+.+...++-+.....| -++.-..+|.+.|++++|++++.+++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 88888887643 3334444444566555555444333332 12333444555666666666665553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.026 Score=40.96 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=51.3
Q ss_pred CcCchHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 465 KPSLKHYTCMVDLLSRAGE---LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..|+++.+.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456677777777754444 68888888877 3455 5666777777888899999999999999999886
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.025 Score=42.26 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=49.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-----P----MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
...|...+.+.|++..|...++.+ + -.+...++..+..++.+.|+++.|...++++.+..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 334555555666666665555443 0 1234567888888999999999999999999999998877655554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.011 Score=46.89 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG---ELGEAYEFIKKI-PMA-P--DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 518 (601)
......+.+-|......+ +++..+...+..++++.+ +.++++.+|++. ... | +...+-.+.-+|.+.|++++
T Consensus 11 ~~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 344566777775444544 367778888888999888 566888888877 223 5 34566667777899999999
Q ss_pred HHHHHHHHHhcCCCCCchHH
Q 045105 519 GQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~ 538 (601)
|.+.++.+.+.+|++..+..
T Consensus 90 A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHH
Confidence 99999999999997665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.02 Score=45.54 Aligned_cols=67 Identities=7% Similarity=-0.052 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 498 PDSVMWGALLGGCVSHG---NLEFGQIAADRLIELE-P-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++..+...+.+++++++ +.++++.+++.+.+.+ | ++...++.|+-++.+.|++++|++.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56666666666666666 4557777777777666 5 345666667777777777777777776665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.024 Score=42.31 Aligned_cols=67 Identities=6% Similarity=-0.072 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELE-------PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+......+...+...|+++.|..+++++.+.. +..+.++..|+.++.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44455678888999999999999999999863 22456889999999999999999999999876653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.063 Score=57.46 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=12.7
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
..|..+.+.+.+.|+++.|++.|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34444444444555555555444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.29 Score=39.95 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=23.6
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 378 AKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555554443 23445555555555555555555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.2 Score=38.17 Aligned_cols=93 Identities=12% Similarity=-0.042 Sum_probs=63.3
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGE---AYEFIKKIP-MA-P--DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~ 518 (601)
......+.+-|......|. |+..+-..+..++.+.....+ ++.+++..- .. | .....-.|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555633334343 666777778888888877666 788887762 22 3 23345556677899999999
Q ss_pred HHHHHHHHHhcCCCCCchHHH
Q 045105 519 GQIAADRLIELEPNNTGNYVM 539 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~ 539 (601)
|.+.++.+.+.+|+|..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999987765443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.21 E-value=1 Score=36.74 Aligned_cols=105 Identities=9% Similarity=0.034 Sum_probs=70.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
.......|+++.|.++.+.+ .+...|..|......+|+++-|.++|..... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 44566778888888887764 3567888888888888888888888888753 3444444555666
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
.+...++-+.....| -++.....+...|+++++.++|.+..
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 666555555444443 23444555666777777777776554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.068 Score=41.81 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=15.8
Q ss_pred cHHhHHHHHHHHhccCch------HHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSI------KTGSEFFDL 458 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~ 458 (601)
|..+|...+.-..+.|++ ++...+|+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~Yer 44 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQ 44 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHH
Confidence 344666666666666666 566666643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.13 Score=53.08 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=50.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
...|...|+++.|+++.+++....|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344667899999999999999999999999999999999999999999999988
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.43 Score=37.42 Aligned_cols=106 Identities=9% Similarity=-0.033 Sum_probs=66.6
Q ss_pred CCCccchHHHHHHHHhcCCh------HHHHHHHHHhhhcCCCCCCh-hhHHHHHHHH------hhcCChHHHHHHHHHHH
Q 045105 20 ERDCVSWNSVVTACAANGLV------LEALECLERMSSLDNETPNL-VSWSAVIGGF------TQNGYDEEAIGMLFRMQ 86 (601)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~------~~~~~~~~a~~~~~~m~ 86 (601)
..|..+|-..+...-+.|+. ++.+++|++... ..||+. ..|..-|..+ ...+++++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34667777777777777888 788888888777 455543 1222222211 22367778888888776
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCc
Q 045105 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSN 128 (601)
Q Consensus 87 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 128 (601)
...-.. ...|......-.+.|++..|.+++...+..+..|.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 653233 45555555555677788888888887777665543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=5.3 Score=40.46 Aligned_cols=114 Identities=7% Similarity=-0.026 Sum_probs=70.1
Q ss_pred CChhhHHHHHHHHHHCCCCccHH----hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHI----SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
.+.+.|...|....... ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 47789999998887543 22332 2333333444455355666666443332 23333344455555678999999
Q ss_pred HHHHHhCCCCC-CHHH-HHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 488 YEFIKKIPMAP-DSVM-WGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 488 ~~~~~~~~~~~-~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
...|+.|+..+ +..- .--+..++...|+.++|...++.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999996433 2222 22244466678999999999999875
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=1.8 Score=33.23 Aligned_cols=117 Identities=9% Similarity=-0.021 Sum_probs=58.8
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---------------------CChhhHH
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---------------------PDLVSQN 402 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~ 402 (601)
-.|..+++.++..+..+.. +..-||.+|.-....-+-+-...+++.+.+ .+....+
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd 95 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 95 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence 3577778888877777643 344455555444444444444444444331 1122233
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV 464 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (601)
..+..+..+|+-++-..++.++... .+|++.....+..||.+.|+..+|.+++...-+.|+
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4444555555555555555554332 244555555555555555555555555544444444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.14 Score=38.99 Aligned_cols=69 Identities=7% Similarity=-0.097 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 497 APDSVMWGALLGGCVSHGNLEF---GQIAADRLIELE-P-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++..+-..+.+++.++.+... ++.+++.+...+ | .....++.|+-.+.+.|++++|++.++.+.+..+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4778888888899998887655 888888888776 5 3556888899999999999999999999987663
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.75 Score=41.00 Aligned_cols=94 Identities=13% Similarity=-0.045 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh-----cCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhc-CCc
Q 045105 39 VLEALECLERMSSLDNETPNLVSWSAVIGGFTQ-----NGYDEEAIGMLFRMQAEGLEP--NARTLSSVLPACARL-QKL 110 (601)
Q Consensus 39 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~-~~~ 110 (601)
...|...+++..+....-.+-..|..+...|.+ -|+.++|.+.|++..+. .| +..++......+++. ++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 456666666666632111135567777777777 37777777777777764 44 245555566666663 777
Q ss_pred chHHHHHHHHHHhcCC--CchHHHHH
Q 045105 111 SLGKEFHGYITRNGFM--SNPFVVNG 134 (601)
Q Consensus 111 ~~a~~~~~~~~~~g~~--~~~~~~~~ 134 (601)
+.+.+.++..+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 7777777777776554 55444433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.28 Score=46.75 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh-----hcCCccCCC
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK-----DRRMHKSPG 570 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-----~~~~~~~~~ 570 (601)
..++.++...|+++++...+..+...+|-+...+..++.+|.++|+..+|++.++++. +-|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3445556666777777777777777777666677777777777777777777766653 335555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.38 E-value=6.2 Score=35.77 Aligned_cols=168 Identities=11% Similarity=0.056 Sum_probs=100.9
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHH----HHHHHHHCCCCccHHhHHHHHHHHh
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA----HFRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|.. +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666678888888888876532 2334556677665554 3555666788888887777777665
Q ss_pred ccCchHH-HHHHHHHHH----hcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 045105 445 HAGSIKT-GSEFFDLMA----YYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSH---G 514 (601)
Q Consensus 445 ~~g~~~~-a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g 514 (601)
.-..-+. =.++.+.+. +.| ..-++..+..+...|.+.|++.+|...|- .+..-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 5322111 111222222 222 22356778888899999999999998886 33122455555555555444 4
Q ss_pred ChhHHHHHHHHHHhcCCCCCchH-HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 515 NLEFGQIAADRLIELEPNNTGNY-VMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
...+ ...| ...+--|.-.|+...|..+++...++
T Consensus 183 ~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred Ccch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3222 1122 12233456789999999998877543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.09 E-value=1.2 Score=32.05 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=53.6
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...|..-.-+..+-...+.|++......+++|.+.+++..|.++++-++..-- ....+|..+++
T Consensus 21 ~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 77778888777778888888999999999999999999999999999988775432 22456666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.04 E-value=1.2 Score=34.58 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCcCchHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 464 VKPSLKHYTCMVDLLSRAGELG---EAYEFIKKI-PMAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 464 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
-.|+..+--.+..++.+....+ +++.+++.+ ...| .....-.|.-++.+.|+++.|.+..+.+.+.+|+|..+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3566666666777777776544 456666655 1123 23344456667788888888888888888888866544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=1.8 Score=41.16 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=51.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCCHhhH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA-----EGLEPNARTL 97 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 97 (601)
++..+...|++++|+..++.+.. ..|-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44556678888888888888776 4667788888888888888888888888887654 3788877654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.49 E-value=0.54 Score=36.00 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=45.2
Q ss_pred CCCcCchHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 463 DVKPSLKHYTCMVDLLSRAGEL---GEAYEFIKKI-PMAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
+-.|+..+--.+..++.+.... .+++.+++.+ ...| ....+-.|.-++.+.|+++.|.+..+.+.+.+|+|..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3455555555666677666554 3455565554 1123 23445556666777777777777777777777766544
Q ss_pred H
Q 045105 537 Y 537 (601)
Q Consensus 537 ~ 537 (601)
.
T Consensus 115 ~ 115 (134)
T 3o48_A 115 G 115 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.35 E-value=3.8 Score=39.72 Aligned_cols=250 Identities=10% Similarity=0.062 Sum_probs=141.2
Q ss_pred CChHHHHHHHHHhhhcC----CCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHH----hc
Q 045105 37 GLVLEALECLERMSSLD----NETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACA----RL 107 (601)
Q Consensus 37 ~~~~~A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~----~~ 107 (601)
|++++|++-+-.+.+.. ...........++..|...|+|+...+.+.-+.+. |..+. ....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 67788877765554421 12233455777888899999999888877766544 32222 2233333332 22
Q ss_pred CCcchHHHHHHHHHH------hc-CCC---chHHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-----CchhHHHHHH
Q 045105 108 QKLSLGKEFHGYITR------NG-FMS---NPFVVNGLVDVYRRCGDMLSALKIFSKFSI----K-----NEVSCNTIIV 168 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~------~g-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-----~~~~~~~li~ 168 (601)
...+. +....... .| +-. .......|...+...|++.+|..++..+.. . -...+...++
T Consensus 108 ~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22221 11111111 11 111 123445788889999999999999988751 1 1335777888
Q ss_pred HHHhcCCHHHHHHHHHHHHh----cCCCCC--eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH---
Q 045105 169 GYCENGNVAEARELFDQMEH----LGVQRG--IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI--- 239 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~--- 239 (601)
.|...+++..|..++..+.. ....|+ ..-|...+..+...++|.+|...|.+.........+...+..++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 89999999999999988742 111222 234556677778889999999888887653323233322222211
Q ss_pred -HhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHhh
Q 045105 240 -ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY--QDLVAAQMAFD 290 (601)
Q Consensus 240 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~ 290 (601)
+..-.+....-..+.........-++...+..++.+|... .++......|.
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 1111111122222333333333335566778888888664 35566655555
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.51 E-value=3.2 Score=42.94 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=71.9
Q ss_pred HHHHHHhcCC-hHHHHHHHHHhhhcCCCCCChhhH-HHHHHHHhhcCC-hHHHHHHHHHHHHc------CCCCCHh----
Q 045105 29 VVTACAANGL-VLEALECLERMSSLDNETPNLVSW-SAVIGGFTQNGY-DEEAIGMLFRMQAE------GLEPNAR---- 95 (601)
Q Consensus 29 ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~p~~~---- 95 (601)
++..+.-.++ .+.|+++|+.+.+. .+.....| ..++..+.+.++ --+|.+++.+..+. ...+...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 4444444555 57789999988873 22222222 233333333332 22455555444321 1111110
Q ss_pred -------hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 96 -------TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 96 -------~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
....-.+.|...|+++.|+++-+...... +.+-.+|..|..+|...|+++.|+-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112233556788888888888877763 4456688888888888888888888888876
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.41 E-value=10 Score=34.60 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=102.1
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHH----HHHHHHCCCCccHHhHHHHHHHHh
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH----FRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
+|.++..=|.+.+++++|.+++.. -...+.+.|+...|..+ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566668888999988886532 22345556665554444 455666778888877777777665
Q ss_pred ccCchHHHHHHH-HHH----HhcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 045105 445 HAGSIKTGSEFF-DLM----AYYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 445 ~~g~~~~a~~~~-~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 517 (601)
....-+-...-| +.+ .+.| ..-|+.....+...|.+.+++.+|...|- .+..++...+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 544322111111 222 2223 23456677888899999999999999884 3534455666666665555443
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 518 FGQIAADRLIELEPNNTGNYV-MLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
|.....|. ..+--|.-.|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 234456778999999998777654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.45 E-value=2.1 Score=30.77 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 494 IPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
+.+-|++.+..+.+.+|++.+|+..|.++++-+.....+...+|-.++.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3567999999999999999999999999999999886655556666553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.32 E-value=12 Score=41.37 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
.|..+.+++...|++++|...+-.+..... -...+..|+..++..|..+
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 466677777777888877777766665432 2334555666555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.78 E-value=2.8 Score=31.98 Aligned_cols=67 Identities=15% Similarity=0.327 Sum_probs=54.5
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...|..-.-+..+....+.|++......+++|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 64 ~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 64 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 7888888887788888888999999999999999999999999999999877543 233556766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.67 E-value=28 Score=37.05 Aligned_cols=257 Identities=12% Similarity=0.069 Sum_probs=134.2
Q ss_pred HHHhcCCHHHHHHHHhhcCCC----Cchh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCeeehHHHHHH
Q 045105 138 VYRRCGDMLSALKIFSKFSIK----NEVS--CNTIIVGYCENGNVAEARELFDQMEHLGV-------QRGIISWNSMISG 204 (601)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~ 204 (601)
+....|+.++++.+++..... +..+ =..+.-+.+..|..+++.+++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 355677888888888877652 2222 22344455666766677777766554210 0111112223333
Q ss_pred HHhCCC-hhHHHHHHHHHHHcCCCCCChhhHHH--HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH--HHhc
Q 045105 205 YVDNSL-YDEAFSMFRDLLMRDGIEPTSFTFGS--VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEM--YCRY 279 (601)
Q Consensus 205 ~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~ 279 (601)
++-.|. -+++.+.+..++.... +....... +-..+...|+.+....++..+.+.. +..+...+..+ +...
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 333343 2456666666665221 11111121 2223456777777777777766532 23333333333 4456
Q ss_pred CCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHh--HHHHHHHHhcCCCchhhHHHHHHH
Q 045105 280 QDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIY--TVGIILSACSSLATMERGKQVHAY 357 (601)
Q Consensus 280 g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~ 357 (601)
|+.+.+..+++ .+... . .|... ....+.-+|+..|+......++..
T Consensus 538 g~~e~~~~li~----------~L~~~---~-------------------dp~vRygaa~alglAyaGTGn~~aIq~LL~~ 585 (963)
T 4ady_A 538 GRQELADDLIT----------KMLAS---D-------------------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585 (963)
T ss_dssp TCGGGGHHHHH----------HHHHC---S-------------------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred CChHHHHHHHH----------HHHhC---C-------------------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77766666655 22210 0 11111 112344578889998888888888
Q ss_pred HHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCChhh--HHHHHHHHHHcCCh-hhHHHHHHHHHHCCCCccH
Q 045105 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVS--QNAMLTAYAMHGHG-KEGIAHFRRILASGFRPDH 433 (601)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~--~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~p~~ 433 (601)
+.+.. ..++.-...+.-++...|+.+.+.++++.+. ..|... -..+.-+....|.. .+++.++..+.. .+|.
T Consensus 586 ~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~ 661 (963)
T 4ady_A 586 AVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVD 661 (963)
T ss_dssp HHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSH
T ss_pred hccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCH
Confidence 87642 2233333333334445677777888887554 233333 33344445555554 578888888865 4454
Q ss_pred Hh
Q 045105 434 IS 435 (601)
Q Consensus 434 ~~ 435 (601)
.+
T Consensus 662 ~V 663 (963)
T 4ady_A 662 FV 663 (963)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.57 E-value=5.4 Score=31.00 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 497 APDSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.|+..+--.+.+++.++.+ ..+++.+++.+....|. ....++.|+-.+.+.|++++|++..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5677777777778877764 45677788888877774 44577778888888999999988888887665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.56 E-value=3 Score=31.91 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 497 APDSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.|+..+--.+.+++.++.+ ..+++.+++.+...+|. ....+..|+-.+.+.|++++|++..+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4555555556666666543 34566666666666663 34556666667777777777777777666544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.50 E-value=15 Score=40.62 Aligned_cols=146 Identities=6% Similarity=-0.048 Sum_probs=95.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCC---------------
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL--------------- 90 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------------- 90 (601)
...++..+.+.+..+-+.++..... .+...--.+..++...|++++|.++|++.-. |+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 3446666777777777777665532 2333334566677788888888888866421 11
Q ss_pred --------CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch----HHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 045105 91 --------EPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP----FVVNGLVDVYRRCGDMLSALKIFSKFSIK 158 (601)
Q Consensus 91 --------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (601)
..-..-|..++..+.+.+.++.+.++-...++.....+. ..|..+.+.+...|++++|...+-.++.+
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 001123677888888888888888887777765432222 26778889999999999998888766533
Q ss_pred --CchhHHHHHHHHHhcCCHHH
Q 045105 159 --NEVSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 159 --~~~~~~~li~~~~~~g~~~~ 178 (601)
-......++..++..|..+.
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhh
Confidence 23456667777776666544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.27 E-value=3.5 Score=33.04 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=64.5
Q ss_pred HCCCCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhc-CCCcCc-------hHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 426 ASGFRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYY-DVKPSL-------KHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 426 ~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
..|+.|... ++.--+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345566554 4444567777888888888777553332 123331 24566777788888888888887764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 495 ---PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 495 ---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
..-+ ...+...+ . ....... -.. .+.+.+.-+.++.||...|++++|+.+++.+
T Consensus 91 q~~k~l~k~~s~~~~~-~---~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 91 QQKKALSKTSKVRPST-G---NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHhcCCCccccc-c---ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1111 11111000 0 0000000 001 1224467788999999999999999999864
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.37 E-value=3.1 Score=33.38 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=56.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-----CCCh-------hhHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHH-hHH
Q 045105 372 ALVDMYAKCGSLKHARLAYKRIS-----TPDL-------VSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHI-SFL 437 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~-----~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~~~ 437 (601)
.-+..+...|.++.|+-+.+.+. .++. .++..+..++...|++..|...|++.+... .-|... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34555666677777766665543 2332 134455666667777777777777654321 111111 110
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 045105 438 SALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497 (601)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (601)
.+- . .. ... .......+...---+..+|.+.|++++|+.+++.++.+
T Consensus 105 ~~~-~--~s-s~p---------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STG-N--SA-STP---------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc-c--cC-CCc---------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 000 0 00 000 00011223334445777888888888888888888643
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.99 E-value=0.96 Score=39.61 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=39.5
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.+.+.|++++|++.+..- ...| |...-..|+..++-.|++++|.+-++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 455777888877766544 3355 5555666777778888888888888888888774
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.75 E-value=23 Score=32.31 Aligned_cols=133 Identities=12% Similarity=0.106 Sum_probs=78.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH----HHHHHHcCCCCCHhhHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM----LFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l 100 (601)
.|.++..-|.+++++++|++++-.- ...+.+.|+...+-++ ++-+.+.++++|......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455566677777777777766551 3345556666655444 3556667888888887777
Q ss_pred HHHHHhcCCcc-hHHHHHH----HHHHhc--CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 045105 101 LPACARLQKLS-LGKEFHG----YITRNG--FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCEN 173 (601)
Q Consensus 101 l~~~~~~~~~~-~a~~~~~----~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 173 (601)
+..+.....-+ .-..+.+ +-.+.| ..-|+.....+...|.+.+++.+|..-|-.-..+....|..++..+...
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 77776654322 1122333 333333 2346677777888888888888888776421222224555554444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.70 E-value=9.9 Score=27.18 Aligned_cols=89 Identities=17% Similarity=0.073 Sum_probs=62.2
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
....++|..|-+.+...+. ...+-..=+..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456777777777776654 22222222345778899999999999999999988877643 5678888888888788
Q ss_pred HHCCCCccHHhHHH
Q 045105 425 LASGFRPDHISFLS 438 (601)
Q Consensus 425 ~~~~~~p~~~~~~~ 438 (601)
..+| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8877 665555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.41 E-value=26 Score=31.74 Aligned_cols=132 Identities=8% Similarity=0.052 Sum_probs=79.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHH----HHHHHHHcCCCCCHhhHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIG----MLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l 100 (601)
.|.++..-|.+++++++|++++..- ...+.+.|+...|-+ +++.+.+.+++++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455556666667777777666551 334556677665555 45566667888888888888
Q ss_pred HHHHHhcCCcc-hHHHHHHHHH----HhcC--CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 045105 101 LPACARLQKLS-LGKEFHGYIT----RNGF--MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCE 172 (601)
Q Consensus 101 l~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 172 (601)
+..+.....-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|..-|-.-...+...+..++.-+..
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 87776543222 2233444443 3332 24667788888888888888888876652221234445544444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.95 E-value=11 Score=27.04 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=60.9
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
....++|..|-+.+...+. ...+-..=+..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456777777777776654 22222222345678899999999999999999988877644 4667778887777788
Q ss_pred HHCCCCccHHhHH
Q 045105 425 LASGFRPDHISFL 437 (601)
Q Consensus 425 ~~~~~~p~~~~~~ 437 (601)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 56555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.67 E-value=6.4 Score=30.06 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=42.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 491 IKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
+-.+.+-|++.+..+.+.+|.+.+|+..|.++++-+.....+...+|-.++.
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3344567999999999999999999999999999999886555666766653
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.29 E-value=12 Score=26.90 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
..++|.-|-+.+...|. ...+-..-+..+...|++++|..+.+...-||...|.++-. .+.|--+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776653 22233333455667888888888888888778777766643 356667777777766666
Q ss_pred cCCCCCeeeh
Q 045105 189 LGVQRGIISW 198 (601)
Q Consensus 189 ~g~~~~~~~~ 198 (601)
.| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 3433333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.16 E-value=11 Score=27.00 Aligned_cols=85 Identities=8% Similarity=-0.058 Sum_probs=56.6
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
..++|.-|-+.+...|. ...+-..-+..+...|++++|..+.+...-||...|-++-. .+.|--+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776653 33333333455677899999999888888888877766643 467777777777777776
Q ss_pred cCCCCCeeeh
Q 045105 189 LGVQRGIISW 198 (601)
Q Consensus 189 ~g~~~~~~~~ 198 (601)
.| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 66 4443333
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=81.60 E-value=33 Score=31.74 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCC--hhhHHHHHHHHHHCCCCc
Q 045105 371 TALVDMYAKCGSLKHARLAYKRISTPDL---VSQNAMLTAYAMHGH--GKEGIAHFRRILASGFRP 431 (601)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p 431 (601)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+....++..+...|+-+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 4556666666677777776666665432 122223333333222 234555556665555433
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.25 E-value=30 Score=30.41 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHh
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTF--VGGALVEMYCRYQDLVAAQMAF 289 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~ 289 (601)
.++.....++++.+.+.|..++.. ...+.+...++.|+.+-+..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 344444455666666666554432 1123344445566655544333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 601 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.63 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.09 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.89 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.58 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.47 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.36 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.97 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.91 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.9 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.48 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.31 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.68 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.55 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-20 Score=181.92 Aligned_cols=214 Identities=13% Similarity=0.125 Sum_probs=173.4
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYA 409 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~ 409 (601)
..+..+...+...++.+.|...+....+.. +-+...+..+...+...|++++|...++... ..+...+..+...+.
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence 344555566666777777777777666654 2245667778888888888988888887765 455667788888999
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 489 (601)
+.|++++|+..|++..+.. +-+..++..+..++...|++++|...++..... .+.+...+..+...+.+.|++++|++
T Consensus 249 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 326 (388)
T d1w3ba_ 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHH
Confidence 9999999999999998853 334568888899999999999999999665554 35566788889999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 490 FIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 490 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
.+++. ...| +..++..+...|...|++++|.+.++++++++|+++.++..++.+|.+.||
T Consensus 327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99886 5566 466788899999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.8e-19 Score=171.98 Aligned_cols=225 Identities=12% Similarity=0.056 Sum_probs=186.3
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC
Q 045105 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGH 413 (601)
Q Consensus 337 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 413 (601)
.........+....+...+....... +.+...+..+...+...|++++|...++... +.+...|..+...+...|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 218 (388)
T d1w3ba_ 140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred cccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcccc
Confidence 34444555566666666666665544 2355667778888999999999999998765 3456788889999999999
Q ss_pred hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHh
Q 045105 414 GKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKK 493 (601)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (601)
+++|+..+++..... +.+...+..+...+.+.|++++|...++...+.. +-+..++..+...+...|++++|++.++.
T Consensus 219 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999998864 4556678888899999999999999997766543 33466888999999999999999999988
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 494 I--PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 494 ~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
. ..+.+...+..+...+...|++++|++.++++.+..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred hhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7 2245778888899999999999999999999999999999999999999999999999999999987754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2e-13 Score=127.63 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=181.9
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCh
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHG 414 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 414 (601)
....+.+.|++++|...|+.+++... -++..+..+..+|...|++++|...|++.. +.+...|..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 45567889999999999999998653 367788889999999999999999998876 45567888899999999999
Q ss_pred hhHHHHHHHHHHCCCCccHHh----------------HHHHHHHHhccCchHHHHHHHHHHHhc-CCCcCchHHHHHHHH
Q 045105 415 KEGIAHFRRILASGFRPDHIS----------------FLSALSACVHAGSIKTGSEFFDLMAYY-DVKPSLKHYTCMVDL 477 (601)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 477 (601)
++|.+.+++.... .|+... ....+..+...+.+.+|...+...... .-.++..++..+...
T Consensus 104 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999998874 332211 111222334556678888888554443 233456678888899
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 478 LSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
+...|++++|+..+++. ...| +...|..+...+...|++++|.+.++++++.+|+++.++..++.+|.+.|++++|.+
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999987 3345 577888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC
Q 045105 556 TRQKMKDRR 564 (601)
Q Consensus 556 ~l~~~~~~~ 564 (601)
.+++..+..
T Consensus 262 ~~~~al~l~ 270 (323)
T d1fcha_ 262 HFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999987653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.3e-11 Score=114.98 Aligned_cols=251 Identities=13% Similarity=0.055 Sum_probs=179.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 045105 28 SVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL 107 (601)
Q Consensus 28 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 107 (601)
.....+.+.|++++|+..|+.+.+ ..|.+..+|..+..++...|++++|...+.+..+.. +-+...+..+...+...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 356677888999999999999888 456678888889999999999999999999887753 33456777778888888
Q ss_pred CCcchHHHHHHHHHHhcCCCc--------------hHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC---CchhHHHHHH
Q 045105 108 QKLSLGKEFHGYITRNGFMSN--------------PFVVNGLVDVYRRCGDMLSALKIFSKFS--IK---NEVSCNTIIV 168 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~~~li~ 168 (601)
|+++.|.+.++.......... .......+..+...+...+|.+.|.+.. .| +...+..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999998888876432110 0011112223344456677777776543 22 4556778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-ChhhHHHHHHHhcccCCH
Q 045105 169 GYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP-TSFTFGSVLIACADMNSL 247 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~ 247 (601)
.+...|++++|...|++..... +-+..+|..+..++...|++++|.+.|++..+ ..| +...+..+..++...|++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHH---HhhccHHHHHHHHHHHHHCCCH
Confidence 8999999999999999987664 33566788888999999999999999998876 334 355677788889999999
Q ss_pred HHHHHHHHHHHHcC----------CCCchhHHHHHHHHHHhcCCHHHH
Q 045105 248 RKGKEIHALAIALG----------LQSDTFVGGALVEMYCRYQDLVAA 285 (601)
Q Consensus 248 ~~a~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~a 285 (601)
++|...|+...+.. ......+|..+-.++...|+.+.+
T Consensus 257 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 257 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998887631 111223445555555555555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=4.3e-08 Score=91.83 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCC----CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc-C-CCcC----chH
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASG----FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY-D-VKPS----LKH 470 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~----~~~ 470 (601)
+..+...+...|+++.+...+....... ......++......+...+....+...+...... . .... ...
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 3344455666666777766666655432 1112234444455566666666666666332221 1 1111 123
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCCchHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKIP-MAP-----DSVMWGALLGGCVSHGNLEFGQIAADRLIEL------EPNNTGNYV 538 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~ 538 (601)
+..+...+...|++++|...+++.. ..| ....+..+...+...|++++|...++++... .|....++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 4445556667777888877777661 111 1234455666777778888888887777643 233455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 539 MLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.++.+|.+.|++++|.+.+++..+
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888888888888887776643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=6.4e-08 Score=88.53 Aligned_cols=212 Identities=10% Similarity=0.010 Sum_probs=163.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG-YDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
+|+.+...+.+.+.+++|+.+++.+.+ ..|-+...|+....++...| ++++|++.++...+.. +-+..+|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 567777788889999999999999999 56778889999999988876 5899999999998763 3456788888889
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCC-----
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI---KNEVSCNTIIVGYCENGN----- 175 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~----- 175 (601)
+.+.|++++|...++.+++.. +.+...|..+..++.+.|++++|++.++.... .+..+|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 999999999999999999875 55688999999999999999999999998873 366678777776666555
Q ss_pred -HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhc
Q 045105 176 -VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACA 242 (601)
Q Consensus 176 -~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 242 (601)
+++|++.+....... +.+...|+-+...+. ....+++.+.++..........+...+..+...+.
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 578888888887765 346666776655544 44467788888777652222233445555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=8e-08 Score=89.96 Aligned_cols=264 Identities=10% Similarity=-0.018 Sum_probs=138.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC----eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh----hhHHHHHH
Q 045105 168 VGYCENGNVAEARELFDQMEHLGVQRG----IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS----FTFGSVLI 239 (601)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~ 239 (601)
..+...|++++|++++++........+ ..++..+..++...|++++|+..|++......-.++. ..+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334555666666666665544321111 1234455566666666666666666654321111121 22333444
Q ss_pred HhcccCCHHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChh
Q 045105 240 ACADMNSLRKGKEIHALAIAL----GLQS---DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVY 312 (601)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (601)
.+...|++..+...+...... +... ....+..+...+...|+++.+...+. ........
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~----------~~~~~~~~---- 165 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR----------SGIEVLSS---- 165 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH----------HHHHHTTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHH----------HHHHHhhh----
Confidence 555666666666666555431 1111 12344556677888899998888877 22211100
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCC--C--C--chhHHhHHHHHHHhcCChHHH
Q 045105 313 TWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY--D--S--DVHIGTALVDMYAKCGSLKHA 386 (601)
Q Consensus 313 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~--~--~~~~~~~l~~~~~~~g~~~~a 386 (601)
.+.......+......+...++...+...+........ . + ....+..+...+...|++++|
T Consensus 166 -------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 166 -------------YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp -------------SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH
Confidence 01112223344455556666777777766665543211 1 1 122334445556667777777
Q ss_pred HHHHhcCCCC-------ChhhHHHHHHHHHHcCChhhHHHHHHHHHH----CCCCccH-HhHHHHHHHHhccCchHHHHH
Q 045105 387 RLAYKRISTP-------DLVSQNAMLTAYAMHGHGKEGIAHFRRILA----SGFRPDH-ISFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 387 ~~~~~~~~~~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 454 (601)
...++..... ....+..+...+...|++++|...+++... .+..|+. .++..+..++...|++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 233 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777665421 112344456667777777777777766543 2333433 355556666667777777776
Q ss_pred HHHH
Q 045105 455 FFDL 458 (601)
Q Consensus 455 ~~~~ 458 (601)
.++.
T Consensus 313 ~l~~ 316 (366)
T d1hz4a_ 313 VLLD 316 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.9e-08 Score=92.06 Aligned_cols=210 Identities=10% Similarity=0.058 Sum_probs=161.9
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG-SLKHARLAYKRIS---TPDLVSQNAMLTAY 408 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~---~~~~~~~~~ll~~~ 408 (601)
..++.+-..+.+.+..++|...++.+++.+. -+...|+....++...| ++++|...++... +.+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 3556666677888999999999999999753 35667777777777776 5899999999876 46678999999999
Q ss_pred HHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCC-----
Q 045105 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE----- 483 (601)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 483 (601)
...|++++|+..++++++.. +-+...|..+...+...|++++|+..++...+.. +-+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 99999999999999999853 4456799999999999999999999997766654 3345577777666666555
Q ss_pred -hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--chHHHHHHHHHH
Q 045105 484 -LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT--GNYVMLANLFAY 546 (601)
Q Consensus 484 -~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~ 546 (601)
+++|++.+.++ ...| +...|..+...+.. ...+++.+.++.+.++.|+.. ..+..++.+|..
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 56788877765 4456 56677766665554 446889999999999988643 455667777754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2.1e-09 Score=96.04 Aligned_cols=93 Identities=11% Similarity=-0.053 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAM 410 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~ 410 (601)
++..+..++.+.|+++.|...|+..++... -++.++..+..+|.+.|++++|...|+++. +.+..++..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 344444455555555555555555554431 234445555555555555555555555544 2233345555555555
Q ss_pred cCChhhHHHHHHHHHHC
Q 045105 411 HGHGKEGIAHFRRILAS 427 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~ 427 (601)
.|++++|...|++..+.
T Consensus 118 ~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh
Confidence 55555555555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=7.1e-08 Score=88.17 Aligned_cols=213 Identities=12% Similarity=0.006 Sum_probs=131.3
Q ss_pred hhHHHHHhhCCC---CCccchHHHHHHHHh--------------cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh
Q 045105 9 DDAKKVFKMMPE---RDCVSWNSVVTACAA--------------NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ 71 (601)
Q Consensus 9 ~~A~~~~~~~~~---~~~~~~~~ll~~~~~--------------~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 71 (601)
+.+..+|+++.. .++..|...+..+.. .+..++|..+|+...+. ..+.+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHh
Confidence 345556666653 234445444443322 22346777788777653 344455667777777778
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHH-HHhcCCHHHHHH
Q 045105 72 NGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV-YRRCGDMLSALK 150 (601)
Q Consensus 72 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~a~~ 150 (601)
.|+++.|..+|+++.+.........|...+..+.+.++.+.|.++|+.+.+.+ +.+...+...... +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 88888888888887764322223467777777777788888888888777654 2333344333332 233567777777
Q ss_pred HHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC--eeehHHHHHHHHhCCChhHHHHHHHHHHH
Q 045105 151 IFSKFSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLG-VQRG--IISWNSMISGYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 151 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 223 (601)
+|+.... .+...|...+..+.+.|+++.|..+|++..... ..|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7776652 245567777777777777777777777765542 2332 23566666666666777777777766654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.3e-08 Score=94.55 Aligned_cols=208 Identities=8% Similarity=-0.121 Sum_probs=152.3
Q ss_pred hHHHHHHHHhcC--CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHH
Q 045105 333 YTVGIILSACSS--LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTA 407 (601)
Q Consensus 333 ~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~ 407 (601)
..+..+..++.. .++++.+...+..+.+.........+......+...|.+++|...++.+.+ .+...|+.+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~ 187 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 334444444444 456889999999998876443333334555677788999999999998874 456788888999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
+.+.|++++|...+....+. .|+.. .+...+...+..+++...+....... +++...+..+...+...|+..+|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHH
Confidence 99999999887766655542 33322 22334556677778888875544433 44455667778888889999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 488 YEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 488 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
...+.+. ...| +...|..+...+...|++++|.+.++++.+++|.+...|..|...+.-
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 9998877 4455 456778888889999999999999999999999888888888877763
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=9.3e-08 Score=87.37 Aligned_cols=183 Identities=9% Similarity=0.018 Sum_probs=133.7
Q ss_pred ChHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHH
Q 045105 382 SLKHARLAYKRIS----TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFD 457 (601)
Q Consensus 382 ~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (601)
..++|..+|++.. +.+...|...+..+...|+++.|..+|+++++.........|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3467777777653 334456777788888889999999999998875322234467888888888999999999997
Q ss_pred HHHhcCCCcCchHHHHHHHH-hhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 458 LMAYYDVKPSLKHYTCMVDL-LSRAGELGEAYEFIKKI-PM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 458 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
...+.. +.+...|...... +...|+.+.|..+|+.+ .. ..+...|...+..+...|+++.|..+++++++..|.++
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 655543 2333444443333 33457888899998877 22 23577888889888999999999999999999877554
Q ss_pred c----hHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 535 G----NYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 535 ~----~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
. .+...+..-...|+.+.+.++.+++.+.-.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3 567777777778999999999888865543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=2.1e-08 Score=89.35 Aligned_cols=195 Identities=11% Similarity=0.009 Sum_probs=137.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-HHhHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-HISFLSALSA 442 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 442 (601)
..++..+...|.+.|++++|...|++.. +.++.+|+.+..+|.+.|++++|+..|++..+. .|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 3456667888999999999999999876 466788999999999999999999999999985 454 4578888899
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHh----cCChh
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MAPDSVMWGALLGGCVS----HGNLE 517 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~----~g~~~ 517 (601)
+...|++++|...++...+.. +.+......+..++.+.+..+.+..+..... ..++...+. ++..+.. .+..+
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 999999999999997666543 2333343344445555565555544443331 122222222 2222221 22234
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.+...+.......|....++..++.+|...|++++|.+.+++..+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 444444444555666677889999999999999999999999887664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=4.5e-08 Score=83.28 Aligned_cols=116 Identities=7% Similarity=-0.105 Sum_probs=61.8
Q ss_pred ccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 045105 431 PDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLG 508 (601)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 508 (601)
|+...+.-....+.+.|++++|+..|+...... +.+...|..+..+|.+.|++++|+..|+++ .+.| +...|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 444445555555666666666666664433332 233445555555666666666666665554 3344 3445555555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
+|...|++++|...++++.++.|++...+...+..+...
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 566666666666666666665554444444444444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=7.9e-08 Score=73.07 Aligned_cols=91 Identities=13% Similarity=0.252 Sum_probs=68.3
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWS 551 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (601)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|++.++++++++|+++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 345566777888887777776 3344 56667777777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhcC
Q 045105 552 DLARTRQKMKDRR 564 (601)
Q Consensus 552 ~A~~~l~~~~~~~ 564 (601)
+|...+++..+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 8888887776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=6e-08 Score=89.96 Aligned_cols=230 Identities=8% Similarity=-0.096 Sum_probs=126.2
Q ss_pred ChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC--ChHHHHHHHHHHHHcCCCCCHhhHHH-HHHHHHhcCCcchHH
Q 045105 38 LVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG--YDEEAIGMLFRMQAEGLEPNARTLSS-VLPACARLQKLSLGK 114 (601)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~ 114 (601)
++++|+.+++...+ ..|.+...|..+..++...+ ++++|...+.+..+.. +++...+.. ....+...+.++.|.
T Consensus 88 ~~~~al~~~~~~l~--~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 88 LVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 35566666666655 34445555555555544443 3556666666665542 223333322 223444456666666
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 045105 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRG 194 (601)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 194 (601)
..++.+++.. +-+...|+.+..++.+.|++++|...+.....-... .......+...+..+++...+....... +++
T Consensus 165 ~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~ 241 (334)
T d1dcea1 165 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK-ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEP 241 (334)
T ss_dssp HHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH-HHHHHHHHHHhcchhHHHHHHHHHHHhC-cch
Confidence 6666655543 334555666666666666665554443332211111 1122233444555556666666655443 344
Q ss_pred eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045105 195 IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP-TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALV 273 (601)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 273 (601)
...+..+...+...+++.+|...+.+... ..| +...+..+..++...|+.++|.+.++.+.+.. +.+...|..|.
T Consensus 242 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~ 317 (334)
T d1dcea1 242 LFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLR 317 (334)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHH
Confidence 55566666777777888888888876543 233 33456666777888888888888888887753 12334455554
Q ss_pred HHHH
Q 045105 274 EMYC 277 (601)
Q Consensus 274 ~~~~ 277 (601)
..+.
T Consensus 318 ~~~~ 321 (334)
T d1dcea1 318 SKFL 321 (334)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.59 E-value=6.3e-08 Score=72.93 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=81.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
-.+...+.+.|++++|+..|++. ...| +...|..+...+.+.|++++|+..++++++.+|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788999999999999987 3456 678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 045105 550 WSDLARTRQKMK 561 (601)
Q Consensus 550 ~~~A~~~l~~~~ 561 (601)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4e-07 Score=69.05 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=83.3
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 517 (601)
...+.+.|++++|+..|+...+.. +-+...|..+..+|.+.|++++|+..+++. ...| +...|..+...+...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456677888888888886655543 445667888888888889999998888877 3334 6778888899999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
+|+..++++++.+|+++..+..+..+-.
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999998888887776643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.2e-06 Score=73.01 Aligned_cols=119 Identities=13% Similarity=-0.020 Sum_probs=84.4
Q ss_pred CCCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 4 KCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
..|+++.|++.|+++.++++.+|..+..+|...|++++|++.|++..+ ..+.+...|..+..++.+.|++++|++.|+
T Consensus 17 ~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (192)
T d1hh8a_ 17 DKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 94 (192)
T ss_dssp HTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 467888888888888778877888888888888888888888888887 456677788888888888888888888888
Q ss_pred HHHHcCCCCC----------------HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcC
Q 045105 84 RMQAEGLEPN----------------ARTLSSVLPACARLQKLSLGKEFHGYITRNGF 125 (601)
Q Consensus 84 ~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 125 (601)
+..... +.+ ..++..+..++...|++++|.+.++...+...
T Consensus 95 kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 95 EALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 765431 111 12334445556666666666666666555433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.1e-06 Score=71.51 Aligned_cols=141 Identities=7% Similarity=-0.072 Sum_probs=101.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHH
Q 045105 374 VDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGS 453 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (601)
...+...|+++.|.+.|..+.+++...|..+..+|...|++++|+..|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3346678999999999999888888888889999999999999999999998853 334568888888899999999999
Q ss_pred HHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 454 EFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
..|+...... +.+... .+...|. ...++ ..++..+...+...|++++|.+.++++.++.|.
T Consensus 91 ~~~~kAl~~~-~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQL-RGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTT-TTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhC-ccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 8886544321 111110 0000000 00111 234455667788899999999999999999885
Q ss_pred C
Q 045105 533 N 533 (601)
Q Consensus 533 ~ 533 (601)
.
T Consensus 153 ~ 153 (192)
T d1hh8a_ 153 P 153 (192)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=8e-07 Score=71.79 Aligned_cols=117 Identities=7% Similarity=0.021 Sum_probs=93.1
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNL 516 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 516 (601)
....|.+.|++++|...|+...+.. +-+...|..+..+|...|++++|+..|+++ ...| +...|..+..++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456778899999999996666654 345678888888999999999999999887 4455 567888999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHH--HHcCCHHHHHHH
Q 045105 517 EFGQIAADRLIELEPNNTGNYVMLANLF--AYAGRWSDLART 556 (601)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 556 (601)
++|.+.++++.++.|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988888777664 344556666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=4.4e-07 Score=76.85 Aligned_cols=96 Identities=7% Similarity=-0.027 Sum_probs=66.0
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHH
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCM 474 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 474 (601)
|+...+......|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..++...+ +.|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 455556666777777777777777777777653 33455677777777777777777777765444 3343 4566777
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 045105 475 VDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~ 494 (601)
..+|.+.|++++|+..|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 77777777777777777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3.9e-07 Score=73.68 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=83.1
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWS 551 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (601)
....|.+.|++++|+..|+++ ...| +...|..+...|...|++++|.+.++++++++|+++.++..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 456788999999999999987 3455 67788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 045105 552 DLARTRQKMKDRRM 565 (601)
Q Consensus 552 ~A~~~l~~~~~~~~ 565 (601)
+|.+.+++.....+
T Consensus 96 eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 96 AALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999887653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=8e-07 Score=67.48 Aligned_cols=107 Identities=13% Similarity=-0.016 Sum_probs=81.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL---GEAYEFIKKI-PMAPDS---VMWGALLGG 509 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~~~---~~~~~l~~~ 509 (601)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+++++++ ...|++ .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356777888889999999996666644 44567788888888775544 5688888886 334433 367778888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 510 CVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
|.+.|++++|++.++++++++|++..+......+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 99999999999999999999998887776665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=1.8e-06 Score=77.71 Aligned_cols=189 Identities=8% Similarity=-0.005 Sum_probs=118.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC---Ccc--HHhHHH
Q 045105 373 LVDMYAKCGSLKHARLAYKRIST-----PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILASGF---RPD--HISFLS 438 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ 438 (601)
....|...|++++|...|.++.. .+ ..+|+.+..+|.+.|++++|+..+++..+... .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45567777777777777766541 12 24677888888888999999888887654210 111 235556
Q ss_pred HHHHHh-ccCchHHHHHHHHHHHhc----CCCcC-chHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH--------HHH
Q 045105 439 ALSACV-HAGSIKTGSEFFDLMAYY----DVKPS-LKHYTCMVDLLSRAGELGEAYEFIKKIP-MAPDS--------VMW 503 (601)
Q Consensus 439 l~~~~~-~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~--------~~~ 503 (601)
+...|. ..|++++|...+....+. +.++. ..++..+...|...|++++|++.++++. ..|+. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 468999999888544331 21221 3457778888999999999999998761 11111 122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHH--cCCHHHHHHHHHHHh
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTG-----NYVMLANLFAY--AGRWSDLARTRQKMK 561 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~l~~~~ 561 (601)
...+..+...|+++.|.+.++++.+.+|..+. .+..++.++.. .+++++|...++++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 33444566789999999999999998875332 23445555443 345778877775443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=4.4e-06 Score=75.10 Aligned_cols=165 Identities=10% Similarity=-0.012 Sum_probs=122.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHC----CCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCC-----cCchH
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILAS----GFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVK-----PSLKH 470 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~ 470 (601)
|......|...|++++|...|.+..+. +-+++. .+|..+..+|.+.|++++|...++........ ....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 445677899999999999999988663 222322 47888899999999999999999554432111 11345
Q ss_pred HHHHHHHhhh-cCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------
Q 045105 471 YTCMVDLLSR-AGELGEAYEFIKKI-------PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG------ 535 (601)
Q Consensus 471 ~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------ 535 (601)
+..+...|.. .|++++|++.+++. +..+ -..++..+...+...|++++|.+.++++....|.++.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 5666666754 69999999999876 1111 1345777888899999999999999999999876543
Q ss_pred -hHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 536 -NYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 536 -~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.+...+.++...|+++.|.+.+++..+..+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 345667778889999999999998877653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=6.2e-06 Score=67.07 Aligned_cols=134 Identities=13% Similarity=0.070 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (601)
.+......+.+.|++++|+..|.+.+..- |... +..+.-......+. ..+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~~-------~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQALR-------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchhH-------HHHHHHHHHHHH
Confidence 44555667788888888888888877631 1100 00001111111111 125667888899
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 480 RAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
+.|++++|+..+++. ...| +...|..+..+|...|+++.|...++++.+++|+++.+...+..+..+.+...+..
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877 4456 78888999999999999999999999999999999999999988887766655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.8e-06 Score=67.74 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.+|..+...|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 35666778889999999999999999999999999999999999999999999999999988663
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0021 Score=57.37 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=87.9
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
+|..--..+...|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 5555555577778889999999999987643 7788888889999999888876552 55678888
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNVA 177 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 177 (601)
...|.+......+ .+...+...++.....++..|-..|.++....+|+... ..+...++.++..|++.+. +
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-H
Confidence 8888765544322 22333344566666788888889999999999888654 3355568888888887643 3
Q ss_pred HHHHHH
Q 045105 178 EARELF 183 (601)
Q Consensus 178 ~a~~~~ 183 (601)
+..+.+
T Consensus 150 kl~e~l 155 (336)
T d1b89a_ 150 KMREHL 155 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.2e-06 Score=66.44 Aligned_cols=94 Identities=7% Similarity=-0.027 Sum_probs=78.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCC--CchHHHHHHHH
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHG---NLEFGQIAADRLIELEPNN--TGNYVMLANLF 544 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 544 (601)
..+++.+...+++++|++.|++. ...| ++.++..+..++.+++ ++++|+.+++++.+.+|.+ +.++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788889999999999999987 3344 6788888888888755 4567999999999988754 34889999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCC
Q 045105 545 AYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 545 ~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.+.|++++|.+.++++.+..+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 999999999999999988763
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.4e-06 Score=64.92 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=62.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch-------HHHHHH
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN-------YVMLAN 542 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~ 542 (601)
..+...|.+.|++++|++.|++. ...| +...+..+..+|...|+++.|++.++++++++|+++.. |..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34556677777777777777665 2334 56667777777777888888888888888777765543 444555
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 045105 543 LFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 543 ~~~~~g~~~~A~~~l~~~~~ 562 (601)
++...|++++|.+.+++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 56666777777777776554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=1.3e-05 Score=65.09 Aligned_cols=133 Identities=9% Similarity=0.039 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCC-cCchHHHHHHHHh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVK-PSLKHYTCMVDLL 478 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 478 (601)
.+......+...|++.+|+..|.+.++. .+.. ......... ..+. .....+..+..+|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~----------~~~~~~~~~---------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG---------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH---------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh----------hhhhhhHHH---------HHhChhhHHHHHHHHHHH
Confidence 3445566677778888888887776541 0100 000000000 0011 1234566677888
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH
Q 045105 479 SRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (601)
.+.|++++|+..++++ ...| +...|..+..++...|+++.|++.++++.+++|+++.+...+..+........++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999888877 4555 5678888888888999999999999999999998888888887776555444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.08 E-value=2.8e-05 Score=62.94 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH-HHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK-TGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
..+......+.+.|++.+|+..|++.+.. .|. .-... ........+ ...+|+.+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~-------------~~~~~~~~~~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM-------------EYGLSEKESKASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT-------------CCSCCHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH-------------hhccchhhhhhcchh-------HHHHHHhHHHH
Confidence 34555666777788888888887765542 000 00000 000011110 12245667788
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH-HH
Q 045105 478 LSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD-LA 554 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~ 554 (601)
|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++.+++|+++.+...+..+....+...+ ..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999887 3344 778888899999999999999999999999999999999999888877766543 44
Q ss_pred HHHHHHhh
Q 045105 555 RTRQKMKD 562 (601)
Q Consensus 555 ~~l~~~~~ 562 (601)
+++..|.+
T Consensus 154 k~~~~~f~ 161 (168)
T d1kt1a1 154 RTYANMFK 161 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.02 E-value=2.3e-05 Score=62.29 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++..+...|.+.|++++|++.++++++++|.++.+|..++.++...|++++|...|++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3555667777788888888888888888888888888888888888888888888888776655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=2.1e-05 Score=64.15 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=82.9
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 518 (601)
........|++++|.+.|...... .+.... ..+ ..+.+-. ..-..+. ......+..+...+...|++++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~~~-~~~~w~~--~~r~~l~-~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----DDL-RDFQFVE--PFATALV-EDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----GGG-TTSTTHH--HHHHHHH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----ccC-cchHHHH--HHHHHHH-HHHHHHHHHHHHHHHHCCCchH
Confidence 334667788888888888554442 111100 000 0011111 0001110 1123467778889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh-----hcCCccCCC
Q 045105 519 GQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK-----DRRMHKSPG 570 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-----~~~~~~~~~ 570 (601)
|...++++.+.+|.+...+..++.+|.+.|++.+|++.|+++. +.|+.|.|.
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999999999999999999999999999999999884 458776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=2.4e-05 Score=62.13 Aligned_cols=128 Identities=10% Similarity=-0.031 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHh
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 478 (601)
..+..-...+.+.|++.+|+..|.+.+..- |... ............. ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence 345566677888899999999988887631 1100 0000000000011 1123667788899
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 479 SRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
.+.|++++|++.++++ ...| +..+|..+..++...|+++.|...++++.+++|+++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999887 4455 778999999999999999999999999999999998888877766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.95 E-value=0.00078 Score=58.90 Aligned_cols=226 Identities=13% Similarity=-0.001 Sum_probs=152.3
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHH
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAK----CGSLKHARLAYKRIST-PDLVSQNAMLT 406 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~ll~ 406 (601)
+..+..+-..+...++.++|...|+...+.| +...+..|...|.. ..+...|...++.... .+......+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence 3445556666777899999999999998877 44455556666665 5578888888887663 34444555555
Q ss_pred HHHH----cCChhhHHHHHHHHHHCCCCccHHhHHHHHHH--HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 407 AYAM----HGHGKEGIAHFRRILASGFRPDHISFLSALSA--CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 407 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
.+.. .++.+.|...++...+.|..+... ....... .........+...+...... .+...+..|...|..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~-~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCA-SLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhHHH-hhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhcc
Confidence 4443 356788999999988876322222 1111222 12334556666666554442 345566677777764
Q ss_pred ----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cC
Q 045105 481 ----AGELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY----AG 548 (601)
Q Consensus 481 ----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 548 (601)
..+...+...++......+......+...|.. ..|++.|...++++.+.+ ++..+..|+.+|.. ..
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSC
T ss_pred CCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCcc
Confidence 45667777777766323456666566555554 568999999999998885 67888999999886 44
Q ss_pred CHHHHHHHHHHHhhcCCc
Q 045105 549 RWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 549 ~~~~A~~~l~~~~~~~~~ 566 (601)
+.++|.+.+++.-+.|..
T Consensus 233 n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CSTTHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHCcCH
Confidence 899999999999888753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=1.5e-05 Score=64.75 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
....|..+...+.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445677778889999999999999999999999999999999999999999999999999998765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.89 E-value=5.5e-05 Score=61.14 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+|..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++++.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455567778899999999999999999999999999999999999999999999999988765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.88 E-value=4.7e-05 Score=56.58 Aligned_cols=89 Identities=11% Similarity=-0.028 Sum_probs=54.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
+...+.+.|++++|+..|++..+ ..|-+...|..+..++.+.|++++|+..|++..+.. +-+...+..+...+...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 45556666777777777776666 334456666666666777777777777776666542 233455555556666666
Q ss_pred CcchHHHHHHHH
Q 045105 109 KLSLGKEFHGYI 120 (601)
Q Consensus 109 ~~~~a~~~~~~~ 120 (601)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=3.1e-06 Score=82.45 Aligned_cols=149 Identities=11% Similarity=-0.033 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHHCCCCccHHhHHHHHHHH--hccCchHHHHHHHHHHHhcCCC-cCchHHHHHHHHhhhcCChHHHHHH
Q 045105 414 GKEGIAHFRRILASGFRPDHISFLSALSAC--VHAGSIKTGSEFFDLMAYYDVK-PSLKHYTCMVDLLSRAGELGEAYEF 490 (601)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 490 (601)
+..+.+.++...+..-.++..-....+..+ ...+.++.++..+.... ++. ++...+..+...+.+.|+.++|...
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 445666666666544344433222222222 23345555555553221 223 3345667777788888888888776
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 491 IKKIPMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 491 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+++.- .+ ...++..+...+...|++++|...++++.++.|++...|..|+.++...|+..+|...+.+......
T Consensus 143 ~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~ 217 (497)
T d1ya0a1 143 QSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 65542 22 1346777888888999999999999999999999999999999999999999999999888876654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.02 Score=50.92 Aligned_cols=292 Identities=10% Similarity=0.011 Sum_probs=147.1
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 135 (601)
.||..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.++.... -+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 4555555566777778888888888887664 3566777777777777766655422 245577777
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 136 VDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
...+.+.....-|.- .......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .++.+
T Consensus 76 ~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 76 CFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHH
Confidence 777776665554422 121122244445567777777777777777777654322 345556667777776653 34444
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHH
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENI 295 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 295 (601)
+.++.. . +......++..|...+- |..++..|.+.|+++.|..+.-.
T Consensus 153 e~l~~~---s----~~y~~~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~---- 199 (336)
T d1b89a_ 153 EHLELF---W----SRVNIPKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMN---- 199 (336)
T ss_dssp HHHHHH---S----TTSCHHHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHhc---c----ccCCHHHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHH----
Confidence 444321 1 11222223333333322 34456667788888877654441
Q ss_pred HHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 296 ENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
. .++..-....+..+.+..+++...++.....+. ++...+.++.
T Consensus 200 ------------~--------------------~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~ 243 (336)
T d1b89a_ 200 ------------H--------------------PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLM 243 (336)
T ss_dssp ------------S--------------------TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred ------------c--------------------chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHH
Confidence 1 111212223344455555555554444444432 2233344444
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHH
Q 045105 376 MYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEF 455 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 455 (601)
.....-+..+..+ .+-+.++..-....++...+.+ +....+++...|...++++.-.+.
T Consensus 244 ~v~~~~d~~r~V~------------------~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 244 VLSPRLDHTRAVN------------------YFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp HHGGGCCHHHHHH------------------HHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccCCCHHHHHH------------------HHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHH
Confidence 4444444444333 3445555666666666655443 335666777777777775543333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.60 E-value=0.00013 Score=58.01 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------CCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPN-----------NTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.+|+.+..+|...|++++|.+.+++++++.|. ...++..++.+|...|++++|.+.+++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888889999999999999998876432 1225788999999999999999999987654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00015 Score=51.78 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=56.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI----P----MAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
+-.+...+.+.|++++|+..|++. + ..++ ..++..+..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345667777778888877777665 1 1122 457888899999999999999999999999999998888876
Q ss_pred HH
Q 045105 542 NL 543 (601)
Q Consensus 542 ~~ 543 (601)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=4.5e-05 Score=59.75 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=69.4
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
|-+.+.+++|+..|+...+.. +.+...+..+..++...+++..+.+ ..+.+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~A 60 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHH
Confidence 445566777777777777642 3334455555555554333222111 11222344
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 488 YEFIKKI-PMAP-DSVMWGALLGGCVSH-----------GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 488 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
+..|+++ .+.| +..+|..+..+|... ++++.|.+.++++++++|++...+..|..+. .|.
T Consensus 61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~ 133 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP 133 (145)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence 4444443 2233 334444444444332 2468899999999999998877776666553 555
Q ss_pred HHHHHHhhcCC
Q 045105 555 RTRQKMKDRRM 565 (601)
Q Consensus 555 ~~l~~~~~~~~ 565 (601)
++..+..++|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 66666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00047 Score=52.39 Aligned_cols=96 Identities=8% Similarity=0.019 Sum_probs=72.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CCC-----HhhHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL-EPN-----ARTLSS 99 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-----~~~~~~ 99 (601)
+..+...+.+.|++++|+..|++..+ ..|.+...|..+..+|.+.|++++|++.++++.+... .+. ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44567788889999999999999888 4566788899999999999999999999998775310 111 135555
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHh
Q 045105 100 VLPACARLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~ 123 (601)
+...+...++++.|...|+.....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666667777888888888877664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.47 E-value=3.7e-05 Score=60.25 Aligned_cols=86 Identities=9% Similarity=0.043 Sum_probs=59.5
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 479 SRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVS----------HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
.+.+.+++|++.+++. ...| +...+..+..+|.. .+.+++|++.++++++++|+++.++..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444555666555554 2234 33444444444432 2456789999999999999999999999999988
Q ss_pred cCC-----------HHHHHHHHHHHhhcC
Q 045105 547 AGR-----------WSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~-----------~~~A~~~l~~~~~~~ 564 (601)
.|+ +++|.+.+++..+..
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 764 678888888777655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.40 E-value=0.032 Score=47.99 Aligned_cols=224 Identities=11% Similarity=0.011 Sum_probs=133.3
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCCCHhhH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ----NGYDEEAIGMLFRMQAEGLEPNARTL 97 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 97 (601)
|+..+..|...+-+.+++++|++.|++..+. -+...+..|...|.. ..+...|...+......+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence 3456666777788889999999999998764 255566667777765 568888888888887765 22233
Q ss_pred HHHHHHHHh----cCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh----cCCHHHHHHHHhhcC-CCCchhHHHHHH
Q 045105 98 SSVLPACAR----LQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR----CGDMLSALKIFSKFS-IKNEVSCNTIIV 168 (601)
Q Consensus 98 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~li~ 168 (601)
..+...+.. ..+.+.|...++...+.|.. .....+...+.. ......+...+.... ..+...+..+..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~ 150 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS 150 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhh
Confidence 333333322 34567777888877776532 222223233332 344566666665544 335566666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 045105 169 GYCE----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD----NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240 (601)
Q Consensus 169 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 240 (601)
.+.. ..+...+...++...+.| +..+...+...|.. ..++++|..+|+...+ .| ++..+..+-..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~-~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc-cc---CHHHHHHHHHH
Confidence 6665 445566666666665544 33344444444443 4567778888877665 43 23333333333
Q ss_pred hcc----cCCHHHHHHHHHHHHHcCC
Q 045105 241 CAD----MNSLRKGKEIHALAIALGL 262 (601)
Q Consensus 241 ~~~----~~~~~~a~~~~~~~~~~~~ 262 (601)
+.. ..+.+.|.+.|+.....|.
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 322 3366777777777776663
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=0.0029 Score=50.93 Aligned_cols=102 Identities=14% Similarity=0.013 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCC--C------------------hhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETP--N------------------LVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~--~------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
........|++++|.+.|..........+ + ...+..+...+.+.|++++|+..++++.+.
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 96 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 96 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 34566777888888888887766421111 1 134566777777788888888888777765
Q ss_pred CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH-----hcCCCchHH
Q 045105 89 GLEPNARTLSSVLPACARLQKLSLGKEFHGYITR-----NGFMSNPFV 131 (601)
Q Consensus 89 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 131 (601)
. +-+...|..++.++...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 97 ~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 97 H-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp S-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred C-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3 44666777777888888888888877777643 577776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.34 E-value=0.00027 Score=61.34 Aligned_cols=126 Identities=10% Similarity=-0.048 Sum_probs=70.0
Q ss_pred HHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHH
Q 045105 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 487 (601)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 35677777777777777752 334567777777777777777777777655543 233 22333333444333333333
Q ss_pred HHHHHhCC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 488 YEFIKKIP--MAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 488 ~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
..-..... ..|+ ...+......+...|+.++|.+.++++.+..|..+..+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 22221111 1222 22223334445666777777777777777777655443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.0006 Score=48.42 Aligned_cols=63 Identities=6% Similarity=-0.068 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------CchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELEPNN-------TGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+-.+...+.+.|++++|...++++.+..|.+ ..++..++.++.+.|++++|...++++.+..+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 4467778899999999999999999886543 34688999999999999999999999988764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00013 Score=70.72 Aligned_cols=221 Identities=8% Similarity=-0.082 Sum_probs=115.9
Q ss_pred hHHHHHhhCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHhhcCChHHHHHHHHHH
Q 045105 10 DAKKVFKMMPE--RD-CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNL-VSWSAVIGGFTQNGYDEEAIGMLFRM 85 (601)
Q Consensus 10 ~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m 85 (601)
+|.+.|+++.+ |+ ..++..+..++...+++++| ++++... .|+. ..++.. ..+. ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e-~~Lw-~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVE-QDLW-NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHH-HHHH-HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHH-HHHH-HHHHHHHHHHHHHh
Confidence 57788888763 43 45666677777777877776 5665542 1221 122211 1111 12245566777766
Q ss_pred HHcCCCCCHhhHHHHHHHHH--hcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-chh
Q 045105 86 QAEGLEPNARTLSSVLPACA--RLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN-EVS 162 (601)
Q Consensus 86 ~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 162 (601)
.+....++..-....+..+. ..+.++.+...+....+.. +++...+..+...+.+.|+.+.|...+.....++ ..+
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 154 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC 154 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHH
Confidence 65544444433322222221 1233444443333322221 3344566677777788888888887766554332 245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhc
Q 045105 163 CNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACA 242 (601)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 242 (601)
+..+...+...|++++|...|++..... +-+..+|+.+...+...|+..+|+..|.+.+. -.+|-..++..+...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHH
Confidence 7778888899999999999999988774 44667899999999999999999999988874 24566666766665543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.97 E-value=0.00034 Score=60.66 Aligned_cols=54 Identities=20% Similarity=0.104 Sum_probs=39.6
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
..+.|++++|+..+++..+ ..|.|...+..+...|+..|++++|.+.++...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3456777777777777777 45667777777777777777777777777777664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.91 E-value=0.0035 Score=49.30 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI--------PMAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
.|+.+..+|.+.|++++|++.+++. ...++ ...+..+..+|...|++++|.+.++++.++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4555666677777777766665543 11222 1245667788889999999999999999886543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.90 E-value=0.17 Score=36.17 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=94.9
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc-CCCcCchHHHHHHHHhhhcCChHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY-DVKPSLKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 486 (601)
+...|..++..+++.+...+ .+..-|+.+|--....-+-+...++++.+-+. .+.|- .....++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcc---
Confidence 45568888888888888764 24455666666666666666666666554321 12221 122334444444332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 487 AYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 487 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
+..-++-.+.....+|+-+.-.+++..+.+.+..+|..+..++.+|.+-|...++-+++++.=++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 23334555677888899888888988877766558999999999999999999999999999888874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.48 E-value=0.063 Score=40.25 Aligned_cols=82 Identities=9% Similarity=-0.067 Sum_probs=51.2
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCHHHH
Q 045105 482 GELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY----AGRWSDL 553 (601)
Q Consensus 482 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 553 (601)
.+.++|++++++....-++.....|...|.. ..|.++|.+.++++.+.. ++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4555666666554212233333334333432 346778888888887764 56677778877776 4578888
Q ss_pred HHHHHHHhhcCC
Q 045105 554 ARTRQKMKDRRM 565 (601)
Q Consensus 554 ~~~l~~~~~~~~ 565 (601)
.+.+++.-+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 888888777774
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=1 Score=41.64 Aligned_cols=115 Identities=9% Similarity=0.022 Sum_probs=64.4
Q ss_pred CChhhHHHHHHHHHHCC-CCccHH-h-HHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHH
Q 045105 412 GHGKEGIAHFRRILASG-FRPDHI-S-FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAY 488 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~-~~p~~~-~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 488 (601)
.+.+.|..++....... +.++.. . ...+.......+..+.+...+......+ .+......++....+.+++..+.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence 46777777777766543 222221 1 1122233344556666776665443332 23333344455556677888888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 489 EFIKKIPMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 489 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
..++.++..|. ..-.-=+..++...|+.+.|...+..+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 88888753332 11112345666777888888888887764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.031 Score=40.66 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=39.5
Q ss_pred cCchHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 466 PSLKHYTCMVDLLSRAG---ELGEAYEFIKKI-PMAP-DS-VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 466 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
|+..+--....++.+.. +.++++.+|+++ ...| +. ..+-.|.-+|.+.|++++|.+.++++.+.+|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44444445555555543 344566666555 1123 22 344555666666677777777777777777655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.33 E-value=0.57 Score=33.46 Aligned_cols=117 Identities=9% Similarity=-0.011 Sum_probs=66.5
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---------------------CChhhHH
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---------------------PDLVSQN 402 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~ 402 (601)
-.|..+++.+++.+...+. +..-||.+|.-....-+-+-....++.+.+ .+...++
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd 90 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 90 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence 4577788888887777643 344455555554444455555555544331 1222334
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV 464 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (601)
..+..+.++|+-++-..+++++.+.+ +|++.....+..+|.+.|...++..++...-+.|+
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 44555666666666666666655543 56666666666666666666666666655555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.87 E-value=0.64 Score=34.31 Aligned_cols=111 Identities=11% Similarity=-0.048 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCChHHHH
Q 045105 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGELGEAY 488 (601)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 488 (601)
++++|+.+|++..+.| .|.. ...|. .....+.++|.++++...+.|. +.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g-~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMFG--CLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--HHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chhh--hhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHHHH
Confidence 5677888888877776 2222 22222 2344567788888866666553 3344445555543 45678888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 045105 489 EFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 531 (601)
++|++.-..-++.....|...|.. ..|.++|.+.++++.+...
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888877323344444555555554 3578889999988887753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.46 Score=34.24 Aligned_cols=69 Identities=9% Similarity=-0.028 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCC-chHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 497 APDSVMWGALLGGCVSHG---NLEFGQIAADRLIELEPNNT-GNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.|...+--...+++.++. +.++|+.+++.+...+|.+. ..++.|+.+|.+.|++++|++.++.+.+..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 355566666777777664 45688888888888888654 5778888899999999999999988877663
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.68 E-value=1.3 Score=29.85 Aligned_cols=67 Identities=15% Similarity=0.327 Sum_probs=52.2
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...|..-.-+..+....+.|++....+.+++|.+.+++..|.++++.++... .++..+|.-+++
T Consensus 17 ~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 17 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 6777777777777777788899999999999999999999999999998877543 223556665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.55 E-value=1.6 Score=29.41 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 495 PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
.+-|++.+..+.+.+|++.+|+..|.++++......-.+...|-.++
T Consensus 36 DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 36 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 46799999999999999999999999999999877643555666554
|