Citrus Sinensis ID: 045143


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MAEPVFLASSPIVLSLQLQYDSVEPNSVSNTDSITVHSTPKFERSKRSLKKALSHPADPVDENPQSELEKVKRSLRKVNNHLVENSAFVQSEFEIEKKNHSLDKLPTSSVCHEGLERSLRNSGEKMKKKTTLKQSKLPKVEATPDLVEMNEMSDVPPSDLAVDESKPWMKSGAKDETIPMTNGNFEPKEDSTNNENNKSSRKVVVLTKKKCAENELQSSPSLPSYIAATESAKGKLRLQGSSRSSEDGVEKNSGTGCHSRFFSPSYL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccc
ccccEEEcccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccc
maepvflasspivlslqlqydsvepnsvsntdsitvhstpkferSKRSLKKAlshpadpvdenpqsELEKVKRSLRKVNNHLVENSAFVQSEFEIEkknhsldklptssvcheglerslrnsgekmkkkttlkqsklpkveatpdlvemnemsdvppsdlavdeskpwmksgakdetipmtngnfepkedstnnennkssRKVVVLTKKkcaenelqsspslpsyIAATESAKgklrlqgssrssedgveknsgtgchsrffspsyl
maepvflaSSPIVLSLQLQYDSVepnsvsntdsitvhstpkferskRSLKKAlshpadpvdenpqseLEKVKRSLRKVNNHLVENSAFVQSEFEIEKknhsldklptssvcheglerslrnsgekmkkkttlkqsklpkveatpdlvemnemsdvppsdlAVDESKpwmksgakdetipmtngnfepkedstnnennkssrkVVVLTKKKCaenelqsspslpsyIAATESAKGklrlqgssrssedgveknsgtgchsrffspsyl
MAEPVFLASSPIVLSLQLQYDSVEPNSVSNTDSITVHSTPKFERSKRSLKKALSHPADPVDENPQSELEKVKRSLRKVNNHLVENSAFVQSEFEIEKKNHSLDKLPTSSVCHEGLERSLRNSGEkmkkkttlkqsklpkVEATPDLVEMNEMSDVPPSDLAVDESKPWMKSGAKDETIPMTNGNFEPKEDSTNNENNKSSRKVVVLTKKKCAENELQSSPSLPSYIAATESAKGKLRLQGSSRSSEDGVEKNSGTGCHSRFFSPSYL
**********PIVLSLQL*********************************************************************************************************************************************************************************************************************************************************
***************************************************************************************************************************************************************************************************************************************************************************
MAEPVFLASSPIVLSLQLQYDSVEPNSVSNTDSITV*********************************KVKRSLRKVNNHLVENSAFVQSEFEIEKKNHSLDKLPTSSVCHEGLERSL****************KLPKVEATPDLVEMNEMSDVPPSDLAVDESKPWMKSGAKDETIPMTNGNFEP*************RKVVVLTKKKCAENELQSSPSLPSYIAATE***********************GTGCHSRFFSPSYL
****VFLASSPIVLSLQL*********************************************************************************************************************************************************************************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAEPVFLASSPIVLSLQLQYDSVEPNSVSNTDSITVHSTPKFERSKRSLKKALSHPADPVDENPQSELEKVKRSLRKVNNHLVENSAFVQSEFEIEKKNHSLDKLPTSSVCHEGLERSLRNSGEKMKKKTTLKQSKLPKVEATPDLVEMNEMSDVPPSDLAVDESKPWMKSGAKDETIPMTNGNFEPKEDSTNNENNKSSRKVVVLTKKKCAENELQSSPSLPSYIAATESAKGKLRLQGSSRSSEDGVEKNSGTGCHSRFFSPSYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
Q8L4D8587 Protein IQ-DOMAIN 31 OS=A yes no 0.861 0.391 0.384 2e-22
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1 Back     alignment and function desciption
 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/260 (38%), Positives = 140/260 (53%), Gaps = 30/260 (11%)

Query: 22  SVEPNSVSNTDSITVHSTPKFERSKRSLKKALSHPADP-VDENPQSELEKVKRSLRKVNN 80
           SV     SN +S +V ++ +FE+ KRS +K  S   +P   E+PQ ELEKVKRSLRKV+N
Sbjct: 285 SVRKVPASNFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSLRKVHN 344

Query: 81  HLVENSAFVQS--EFEIEKKNHSLDKLPTSS--VCHEGLERSLRNSGEKMKKKTTLKQSK 136
            +VE+S   Q     E+EK    ++K   SS  + HE  E  +    EK K++     S+
Sbjct: 345 PVVESSIQPQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEKKKQEI----SE 400

Query: 137 LPKVEA--------TPDLVEMNEMSD------VPPSDLAVDESKPWMKSGAKDETIPMTN 182
            P+ E         TP  +E NE  D      +  ++ A+ E KP M+   K+E  P  N
Sbjct: 401 QPEEEVHALEMEVHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTPKPN 460

Query: 183 GNFEPKEDSTNNENNKSSRKVVVLTKKKCAE--NELQSSPSLPSYIAATESAKGKLRLQG 240
                KE+S   EN KS +K    +K +  E     ++SPS+PSY+ AT+SAK KLRLQG
Sbjct: 461 N----KENSAGKENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQG 516

Query: 241 SSRSSE-DGVEKNSGTGCHS 259
           S +S+E DG EK +    HS
Sbjct: 517 SPKSAEQDGTEKATVPRRHS 536





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
224124046 582 predicted protein [Populus trichocarpa] 0.940 0.431 0.429 3e-47
118481218 592 unknown [Populus trichocarpa] 0.940 0.423 0.429 4e-47
255540951 590 calmodulin binding protein, putative [Ri 0.853 0.386 0.491 1e-46
225456707 573 PREDICTED: protein IQ-DOMAIN 31-like [Vi 0.936 0.436 0.432 6e-45
224121528359 predicted protein [Populus trichocarpa] 0.850 0.632 0.475 5e-38
356512359 586 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.842 0.383 0.424 1e-37
356562818 587 PREDICTED: protein IQ-DOMAIN 31-like [Gl 0.842 0.383 0.428 7e-37
449520463 599 PREDICTED: protein IQ-DOMAIN 31-like [Cu 0.808 0.360 0.439 1e-35
449469462 599 PREDICTED: protein IQ-DOMAIN 31-like [Cu 0.808 0.360 0.435 4e-35
7208782314 hypothetical protein [Cicer arietinum] 0.857 0.729 0.367 2e-31
>gi|224124046|ref|XP_002330091.1| predicted protein [Populus trichocarpa] gi|222871225|gb|EEF08356.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/321 (42%), Positives = 172/321 (53%), Gaps = 70/321 (21%)

Query: 6   FLASSPIVLSLQLQYDSVEPNSVS------------------------------------ 29
            LASSP V+ LQL YDSVEPNSV+                                    
Sbjct: 214 LLASSPTVMPLQLPYDSVEPNSVANWLECWTASRFWKPVPQAKKIPYSKTQRKHSNGQIV 273

Query: 30  -----------------NTDSITVHSTPKFERSKRSLKKALSHPADPVDENPQSELEKVK 72
                            N DS +V +T +FE+ KR+ +K  SHPAD V E+PQ ELEKVK
Sbjct: 274 EAETGRPKRSVRRVPAANLDSTSVQATSEFEKPKRNQRKVSSHPADSVQESPQIELEKVK 333

Query: 73  RSLRKVNNHLVENSAFVQSEFEIEKKNHSLDKLPTSSVCHEGLERSLRNSGEKMKKKTTL 132
           R+LRKVNN +VENSA   SE EIEK   +L+K+  +S     L  S  NS EKMKK+TT+
Sbjct: 334 RNLRKVNNLVVENSA--HSEVEIEKPKQTLEKVSGTS-GDNVLGWSSSNSAEKMKKETTM 390

Query: 133 K--------------QSKLPKVEATPDLVEMNEMSDVPPSDLAVDESKPWMKSGAKDETI 178
                           S LP  E   + +E  +  +    D AV ESK  + +G K E  
Sbjct: 391 TTPNVLDVAKNEPNLMSTLPDAETAEEPLETIKALESSHEDQAVVESKASVDTGGKGENT 450

Query: 179 PMTNGNFEPKEDSTNNENNKSSRKVVVLTKKKCAENELQSSPSLPSYIAATESAKGKLRL 238
           P  NG  + K+D T NEN+K+++K  V  K + AEN +QSSPSLPSY+AATESAK KLR 
Sbjct: 451 PQLNGQSKHKDDPTINENHKTAKKASVAVKPERAENGIQSSPSLPSYMAATESAKAKLRA 510

Query: 239 QGSSRSSEDGVEKNSGTGCHS 259
           QGS R S+DGVEKN+ T  HS
Sbjct: 511 QGSPRFSQDGVEKNNVTRRHS 531




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481218|gb|ABK92559.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540951|ref|XP_002511540.1| calmodulin binding protein, putative [Ricinus communis] gi|223550655|gb|EEF52142.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225456707|ref|XP_002274035.1| PREDICTED: protein IQ-DOMAIN 31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121528|ref|XP_002318607.1| predicted protein [Populus trichocarpa] gi|222859280|gb|EEE96827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512359|ref|XP_003524887.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|356562818|ref|XP_003549665.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max] Back     alignment and taxonomy information
>gi|449520463|ref|XP_004167253.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449469462|ref|XP_004152439.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|7208782|emb|CAB76913.1| hypothetical protein [Cicer arietinum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2019205587 IQD31 "AT1G74690" [Arabidopsis 0.876 0.398 0.375 4e-27
TAIR|locus:2034929572 IQD30 "AT1G18840" [Arabidopsis 0.872 0.407 0.337 2.6e-19
TAIR|locus:2058862636 IQD29 "AT2G02790" [Arabidopsis 0.423 0.177 0.314 8e-07
TAIR|locus:2019205 IQD31 "AT1G74690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 311 (114.5 bits), Expect = 4.0e-27, P = 4.0e-27
 Identities = 96/256 (37%), Positives = 134/256 (52%)

Query:    22 SVEPNSVSNTDSITVHSTPKFERSKRSLKKALSHPADP-VDENPQSELEKVKRSLRKVNN 80
             SV     SN +S +V ++ +FE+ KRS +K  S   +P   E+PQ ELEKVKRSLRKV+N
Sbjct:   285 SVRKVPASNFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSLRKVHN 344

Query:    81 HLVENSAFVQSE--FEIEKKNHSLDKLPTSS--VCHEGLERSLRNSGEXXXXXXXXX--- 133
              +VE+S   Q     E+EK    ++K   SS  + HE  E  +    E            
Sbjct:   345 PVVESSIQPQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEKKKQEISEQPEE 404

Query:   134 XXXXXXVEA-TPDLVEMNEMSD------VPPSDLAVDESKPWMKSGAKDETIPMTNGNFE 186
                   +E  TP  +E NE  D      +  ++ A+ E KP M+   K+E  P  N    
Sbjct:   405 EVHALEMEVHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTPKPNN--- 461

Query:   187 PKEDSTNNENNKSSRKVVVLTKKKCAENE--LQSSPSLPSYIAATESAKGKLRLQGSSRS 244
              KE+S   EN KS +K    +K +  E+    ++SPS+PSY+ AT+SAK KLRLQGS +S
Sbjct:   462 -KENSAGKENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQGSPKS 520

Query:   245 SE-DGVEKNSGTGCHS 259
             +E DG EK +    HS
Sbjct:   521 AEQDGTEKATVPRRHS 536




GO:0005516 "calmodulin binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0007020 "microtubule nucleation" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2034929 IQD30 "AT1G18840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058862 IQD29 "AT2G02790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
pfam13178105 pfam13178, DUF4005, Protein of unknown function (D 1e-05
>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005) Back     alignment and domain information
 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 194 NENNKSSRKVVVLTKKKCAENELQSSPSLPSYIAATESAKGKLRLQGSSRS 244
           + +  S       TK +  +N   SSPSLP+Y+AATESAK K+R Q + R 
Sbjct: 9   SSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQ 59


This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
PF13178102 DUF4005: Protein of unknown function (DUF4005) 99.5
>PF13178 DUF4005: Protein of unknown function (DUF4005) Back     alignment and domain information
Probab=99.50  E-value=2.2e-14  Score=115.16  Aligned_cols=43  Identities=47%  Similarity=0.408  Sum_probs=38.3

Q ss_pred             CchhhhhcccccchhcccCCCCCCCCcc---CCCCCCccccCCCCC
Q 045143          222 LPSYIAATESAKGKLRLQGSSRSSEDGV---EKNSGTGCHSRFFSP  264 (267)
Q Consensus       222 ~PsyMa~T~Sakak~r~~~spr~~~~~~---e~~~~~rR~Slp~~~  264 (267)
                      +|+|||+|||||||+|+|++||+++++.   ++....+|+|||...
T Consensus        34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~   79 (102)
T PF13178_consen   34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSS   79 (102)
T ss_pred             CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCC
Confidence            9999999999999999999999999874   456678999999654




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00