Citrus Sinensis ID: 045151

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFGGLS
cEEEEEccEEEEEEEcccccccccEEEEEEccEEEEEEEccccccccccEEEEEEcccccEEEEHHHHHHHccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHccccEEEEEcccEEEEccccccEEEEEEccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccEEEEccccc
ccEEEEcccEEEEEccEEEEccccEEEEEEEEEEEEEEEcccccccccEEEEEccccccEEEccHHHcHHHccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEcccEEEEEccccccccccccccEEEEcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccEEcccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEcccccEEEEEcccc
mevkarapgkiilAGEHAVVHGSTAVAACIDLYTYvslrfpsdsddddTLKLVLKDMELNFSWSVTRIKATLshlgspfpstpttcsmEVIKSIAVLVdeqnipeakiglssgATAFLWLYTSiigfkpatvvvtsdlplgaglgssAAFCVSLTAALLGSlnsvhldknhqgwltygesDLDLLNKWAFegekiihgkpsgldntvstYGNIIKFrsgnmtciksnmplkmlITNTKVGRNTRALVAGvsersmrhpdamsSVFNAVDSISKELSTiiesptpddlsiTEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLAskltgaggggcaltLLPTLLSATVVEKVTTELETCgfqcliagiggtGVEVCFGGLS
mevkarapGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIihgkpsgldntvSTYGNIIKFRSGNMTCIKSNMPLKMLitntkvgrnTRALVAgvsersmrhpdamSSVFNAVDSISKELstiiesptpddlsITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFGGLS
MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPsdsddddTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITekeerleelmemNQGLLQCMGVSHSSIETVLRTTLKFklaskltgaggggcaltllptllsatvvekvtteletCGFQCLIAGIGGTGVEVCFGGLS
*********KIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVA*******************************************************QGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFG***
*EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFG***
MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFGGLS
MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFGG**
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MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFGGLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
P46086378 Mevalonate kinase OS=Arab yes no 0.971 0.994 0.680 1e-147
Q03426396 Mevalonate kinase OS=Homo yes no 0.930 0.909 0.407 2e-63
P17256395 Mevalonate kinase OS=Ratt yes no 0.912 0.893 0.389 4e-56
Q5E9T8396 Mevalonate kinase OS=Bos yes no 0.930 0.909 0.387 9e-56
Q9R008395 Mevalonate kinase OS=Mus yes no 0.922 0.903 0.393 2e-55
Q86AG7390 Mevalonate kinase OS=Dict yes no 0.917 0.910 0.363 2e-51
Q09780404 Putative mevalonate kinas yes no 0.821 0.787 0.352 1e-42
P07277443 Mevalonate kinase OS=Sacc yes no 0.935 0.817 0.312 4e-40
Q8U0F3334 Mevalonate kinase OS=Pyro yes no 0.754 0.874 0.294 5e-26
C6A3T5333 Mevalonate kinase OS=Ther yes no 0.837 0.972 0.277 5e-26
>sp|P46086|KIME_ARATH Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1 Back     alignment and function desciption
 Score =  521 bits (1343), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/385 (68%), Positives = 312/385 (81%), Gaps = 9/385 (2%)

Query: 1   MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFP-SDSDDDDTLKLVLKDMEL 59
           MEVKARAPGKIILAGEHAVVHGSTAVAA IDLYTYV+LRFP   ++++D L L LKD+ L
Sbjct: 1   MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSAENNDRLTLQLKDISL 60

Query: 60  NFSWSVTRIKATLSHLGSPF-PSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFL 118
            FSWS+ RIK  + +  S    STP +CS E +KSIAVLV+EQN+P+ K+ LSSG + FL
Sbjct: 61  EFSWSLARIKEAIPYDSSTLCRSTPASCSEETLKSIAVLVEEQNLPKEKMWLSSGISTFL 120

Query: 119 WLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYG 178
           WLYT IIGF PATVV+ S+LP G+GLGSSAA CV+LTAALL S  S+       GW +  
Sbjct: 121 WLYTRIIGFNPATVVINSELPYGSGLGSSAALCVALTAALLAS--SISEKTRGNGWSSLD 178

Query: 179 ESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTK 238
           E++L+LLNKWAFEGEKIIHGKPSG+DNTVS YGN+IKF SG +T ++SNMPL+MLITNT+
Sbjct: 179 ETNLELLNKWAFEGEKIIHGKPSGIDNTVSAYGNMIKFCSGEITRLQSNMPLRMLITNTR 238

Query: 239 VGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEE 298
           VGRNT+ALV+GVS+R++RHPDAM SVFNAVDSISKEL+ II+S   D+ S+TEKEER++E
Sbjct: 239 VGRNTKALVSGVSQRAVRHPDAMKSVFNAVDSISKELAAIIQS--KDETSVTEKEERIKE 296

Query: 299 LMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKV 358
           LMEMNQGLL  MGVSHSSIE V+ TT+K KL SKLTGAGGGGC LTLLPT    TVV+KV
Sbjct: 297 LMEMNQGLLLSMGVSHSSIEAVILTTVKHKLVSKLTGAGGGGCVLTLLPT---GTVVDKV 353

Query: 359 TTELETCGFQCLIAGIGGTGVEVCF 383
             ELE+ GFQC  A IGG G ++C+
Sbjct: 354 VEELESSGFQCFTALIGGNGAQICY 378

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 6
>sp|Q03426|KIME_HUMAN Mevalonate kinase OS=Homo sapiens GN=MVK PE=1 SV=1 Back     alignment and function description
>sp|P17256|KIME_RAT Mevalonate kinase OS=Rattus norvegicus GN=Mvk PE=1 SV=1 Back     alignment and function description
>sp|Q5E9T8|KIME_BOVIN Mevalonate kinase OS=Bos taurus GN=MVK PE=2 SV=1 Back     alignment and function description
>sp|Q9R008|KIME_MOUSE Mevalonate kinase OS=Mus musculus GN=Mvk PE=2 SV=1 Back     alignment and function description
>sp|Q86AG7|KIME_DICDI Mevalonate kinase OS=Dictyostelium discoideum GN=mvk PE=1 SV=1 Back     alignment and function description
>sp|Q09780|KIME_SCHPO Putative mevalonate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg12 PE=2 SV=1 Back     alignment and function description
>sp|P07277|KIME_YEAST Mevalonate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG12 PE=1 SV=1 Back     alignment and function description
>sp|Q8U0F3|KIME_PYRFU Mevalonate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=mvk PE=3 SV=1 Back     alignment and function description
>sp|C6A3T5|KIME_THESM Mevalonate kinase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=mvk PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
16417946386 mevalonate kinase [Hevea brasiliensis] g 0.997 1.0 0.772 1e-167
225450989388 PREDICTED: mevalonate kinase [Vitis vini 1.0 0.997 0.759 1e-165
118488329387 unknown [Populus trichocarpa] 0.989 0.989 0.762 1e-164
356505870387 PREDICTED: mevalonate kinase-like [Glyci 0.992 0.992 0.731 1e-163
393008681387 mevalonate kinase [Panax notoginseng] 0.992 0.992 0.744 1e-163
255636264387 unknown [Glycine max] 0.992 0.992 0.726 1e-162
255577554386 mevalonate kinase, putative [Ricinus com 0.997 1.0 0.770 1e-162
388507406389 unknown [Lotus japonicus] 0.997 0.992 0.733 1e-161
387604151386 mevalonate kinase [Bacopa monnieri] 0.989 0.992 0.738 1e-160
255542604386 mevalonate kinase, putative [Ricinus com 0.987 0.989 0.778 1e-160
>gi|16417946|gb|AAL18925.1|AF429384_1 mevalonate kinase [Hevea brasiliensis] gi|164604974|dbj|BAF98283.1| mevalonate kinase [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/387 (77%), Positives = 345/387 (89%), Gaps = 1/387 (0%)

Query: 1   MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELN 60
           MEVKARAPGKIIL+GEHAVVHGSTAVAA I+LYTYV+L F + +++DD+LKL LKD+ L 
Sbjct: 1   MEVKARAPGKIILSGEHAVVHGSTAVAASINLYTYVTLSFAT-AENDDSLKLQLKDLALE 59

Query: 61  FSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWL 120
           FSW + RI+  LS+LG+P  ST T+CSME IK+I+ LV+E+NIPEAKI L+SG +AFLWL
Sbjct: 60  FSWPIGRIREALSNLGAPSSSTRTSCSMESIKTISALVEEENIPEAKIALTSGVSAFLWL 119

Query: 121 YTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGES 180
           YTSI GFKPATVVVTSDLPLG+GLGSSAAFCV+L+AALL   +SV++D  H GW  +GES
Sbjct: 120 YTSIQGFKPATVVVTSDLPLGSGLGSSAAFCVALSAALLAFSDSVNVDTKHLGWSIFGES 179

Query: 181 DLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVG 240
           DL+LLNKWA EGEKIIHGKPSG+DNTVS YGN+IKF+SGN+T IKSNMPLKML+TNT+VG
Sbjct: 180 DLELLNKWALEGEKIIHGKPSGIDNTVSAYGNMIKFKSGNLTRIKSNMPLKMLVTNTRVG 239

Query: 241 RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELM 300
           RNT+ALVAGVSER++RHP+AMS VFNAVDSIS EL+ II+SP PDD+SITEKEE+LEELM
Sbjct: 240 RNTKALVAGVSERTLRHPNAMSFVFNAVDSISNELANIIQSPAPDDVSITEKEEKLEELM 299

Query: 301 EMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTT 360
           EMNQGLLQCMGVSH+SIETVLRTTLK+KLASKLTGAGGGGC LTLLPTLLS TVV+K   
Sbjct: 300 EMNQGLLQCMGVSHASIETVLRTTLKYKLASKLTGAGGGGCVLTLLPTLLSGTVVDKAIA 359

Query: 361 ELETCGFQCLIAGIGGTGVEVCFGGLS 387
           ELE+CGFQCLIAGIGG GVE CFGG S
Sbjct: 360 ELESCGFQCLIAGIGGNGVEFCFGGSS 386

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225450989|ref|XP_002284813.1| PREDICTED: mevalonate kinase [Vitis vinifera] gi|296088313|emb|CBI36758.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118488329|gb|ABK95983.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356505870|ref|XP_003521712.1| PREDICTED: mevalonate kinase-like [Glycine max] Back     alignment and taxonomy information
>gi|393008681|gb|AFN02124.1| mevalonate kinase [Panax notoginseng] Back     alignment and taxonomy information
>gi|255636264|gb|ACU18472.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255577554|ref|XP_002529655.1| mevalonate kinase, putative [Ricinus communis] gi|223530881|gb|EEF32742.1| mevalonate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388507406|gb|AFK41769.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|387604151|gb|AFJ93086.1| mevalonate kinase [Bacopa monnieri] Back     alignment and taxonomy information
>gi|255542604|ref|XP_002512365.1| mevalonate kinase, putative [Ricinus communis] gi|223548326|gb|EEF49817.1| mevalonate kinase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2146375378 MK "mevalonate kinase" [Arabid 0.832 0.851 0.652 1.3e-109
UNIPROTKB|Q03426396 MVK "Mevalonate kinase" [Homo 0.782 0.765 0.378 6.1e-52
UNIPROTKB|F1PJQ9445 MVK "Uncharacterized protein" 0.785 0.683 0.357 4.7e-48
UNIPROTKB|J9P1Z7400 MVK "Uncharacterized protein" 0.785 0.76 0.357 4.7e-48
RGD|621295395 Mvk "mevalonate kinase" [Rattu 0.777 0.762 0.357 2e-47
MGI|MGI:107624395 Mvk "mevalonate kinase" [Mus m 0.922 0.903 0.341 2.3e-46
UNIPROTKB|F1MMC8440 MVK "Mevalonate kinase" [Bos t 0.782 0.688 0.356 2.9e-46
UNIPROTKB|Q5E9T8396 MVK "Mevalonate kinase" [Bos t 0.782 0.765 0.356 2.9e-46
UNIPROTKB|F5H8H2344 MVK "Mevalonate kinase" [Homo 0.361 0.406 0.386 9.5e-46
ZFIN|ZDB-GENE-041114-37396 mvk "mevalonate kinase" [Danio 0.940 0.919 0.321 1e-45
TAIR|locus:2146375 MK "mevalonate kinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1039 (370.8 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
 Identities = 214/328 (65%), Positives = 253/328 (77%)

Query:     1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPX-XXXXXXTLKLVLKDMEL 59
             MEVKARAPGKIILAGEHAVVHGSTAVAA IDLYTYV+LRFP         L L LKD+ L
Sbjct:     1 MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSAENNDRLTLQLKDISL 60

Query:    60 NFSWSVTRIKATLSHLGSPF-PSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFL 118
              FSWS+ RIK  + +  S    STP +CS E +KSIAVLV+EQN+P+ K+ LSSG + FL
Sbjct:    61 EFSWSLARIKEAIPYDSSTLCRSTPASCSEETLKSIAVLVEEQNLPKEKMWLSSGISTFL 120

Query:   119 WLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYG 178
             WLYT IIGF PATVV+ S+LP G+GLGSSAA CV+LTAALL S  S+       GW +  
Sbjct:   121 WLYTRIIGFNPATVVINSELPYGSGLGSSAALCVALTAALLAS--SISEKTRGNGWSSLD 178

Query:   179 ESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTK 238
             E++L+LLNKWAFEGEKIIHGKPSG+DNTVS YGN+IKF SG +T ++SNMPL+MLITNT+
Sbjct:   179 ETNLELLNKWAFEGEKIIHGKPSGIDNTVSAYGNMIKFCSGEITRLQSNMPLRMLITNTR 238

Query:   239 VGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITXXXXXXXX 298
             VGRNT+ALV+GVS+R++RHPDAM SVFNAVDSISKEL+ II+S   D+ S+T        
Sbjct:   239 VGRNTKALVSGVSQRAVRHPDAMKSVFNAVDSISKELAAIIQSK--DETSVTEKEERIKE 296

Query:   299 XXXXNQGLLQCMGVSHSSIETVLRTTLK 326
                 NQGLL  MGVSHSSIE V+ TT+K
Sbjct:   297 LMEMNQGLLLSMGVSHSSIEAVILTTVK 324
GO:0004335 "galactokinase activity" evidence=IEA
GO:0004496 "mevalonate kinase activity" evidence=IEA;IGI;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006012 "galactose metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0046835 "carbohydrate phosphorylation" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0000280 "nuclear division" evidence=RCA
GO:0007000 "nucleolus organization" evidence=RCA
UNIPROTKB|Q03426 MVK "Mevalonate kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJQ9 MVK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1Z7 MVK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|621295 Mvk "mevalonate kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107624 Mvk "mevalonate kinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMC8 MVK "Mevalonate kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9T8 MVK "Mevalonate kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F5H8H2 MVK "Mevalonate kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-37 mvk "mevalonate kinase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q03426KIME_HUMAN2, ., 7, ., 1, ., 3, 60.40770.93020.9090yesno
Q86AG7KIME_DICDI2, ., 7, ., 1, ., 3, 60.36340.91730.9102yesno
C5A7L8KIME_THEGJ2, ., 7, ., 1, ., 3, 60.30120.83970.9730yesno
P07277KIME_YEAST2, ., 7, ., 1, ., 3, 60.31230.93540.8171yesno
P17256KIME_RAT2, ., 7, ., 1, ., 3, 60.38910.91210.8936yesno
P46086KIME_ARATH2, ., 7, ., 1, ., 3, 60.68050.97150.9947yesno
Q9R008KIME_MOUSE2, ., 7, ., 1, ., 3, 60.39320.92240.9037yesno
Q5E9T8KIME_BOVIN2, ., 7, ., 1, ., 3, 60.38700.93020.9090yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1.39LOW CONFIDENCE prediction!
3rd Layer2.7.10.976
3rd Layer2.7.1.360.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
PLN02677387 PLN02677, PLN02677, mevalonate kinase 0.0
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 4e-74
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 8e-60
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 5e-24
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 2e-17
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 3e-17
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 3e-10
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 2e-09
TIGR00131386 TIGR00131, gal_kin, galactokinase 8e-08
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 3e-05
TIGR01219454 TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase 4e-04
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 0.001
TIGR01220358 TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kina 0.001
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 0.001
COG2605333 COG2605, COG2605, Predicted kinase related to gala 0.002
PLN02521497 PLN02521, PLN02521, galactokinase 0.002
COG1685278 COG1685, COG1685, Archaeal shikimate kinase [Amino 0.002
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 0.003
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase Back     alignment and domain information 
 Score =  676 bits (1746), Expect = 0.0
 Identities = 297/387 (76%), Positives = 342/387 (88%)

Query: 1   MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELN 60
           MEVKARAPGKIILAGEHAVVHGSTAVAA IDLYTYVSLRFP  +++DDTLKL LKD+ L 
Sbjct: 1   MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLE 60

Query: 61  FSWSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWL 120
           FSW + RIK  L  LG+P PSTPT+CS E +KSIA LV+EQNIPEAKI LSSG +AFLWL
Sbjct: 61  FSWPLARIKEALPDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWL 120

Query: 121 YTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWLTYGES 180
           YTSI+GF PATVVVTS+LPLG+GLGSSAAFCV+L+AALL + +S+ +     GW +  E+
Sbjct: 121 YTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDET 180

Query: 181 DLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVG 240
           DL+L+NKWAFEGEKIIHGKPSG+DNTVSTYGN+IKF+SG +T ++SNMPLKMLITNT+VG
Sbjct: 181 DLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGELTRLQSNMPLKMLITNTRVG 240

Query: 241 RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELM 300
           RNT+ALVAGVSER++RHPDAM SVFNAVDSIS+EL+TII+SP  D+LSITEKEE+L+ELM
Sbjct: 241 RNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELM 300

Query: 301 EMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTT 360
           EMNQGLLQCMGVSHSSIETVLRTTLK+KL SKLTGAGGGGC LTLLPTLLS TVV+KV  
Sbjct: 301 EMNQGLLQCMGVSHSSIETVLRTTLKYKLVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIA 360

Query: 361 ELETCGFQCLIAGIGGTGVEVCFGGLS 387
           ELE+ GFQC  AGIGG GV++C+GG S
Sbjct: 361 ELESSGFQCFTAGIGGNGVQICYGGCS 387

Length = 387
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|233318 TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|130287 TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
PLN02677387 mevalonate kinase 100.0
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 100.0
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 100.0
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 100.0
PRK00555363 galactokinase; Provisional 100.0
PRK05101382 galactokinase; Provisional 100.0
PRK05322387 galactokinase; Provisional 100.0
PTZ00290468 galactokinase; Provisional 100.0
PLN02865423 galactokinase 100.0
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 100.0
TIGR00131386 gal_kin galactokinase. The galactokinases found by 100.0
PRK03926302 mevalonate kinase; Provisional 100.0
PLN02521497 galactokinase 100.0
PRK03817351 galactokinase; Provisional 100.0
PTZ00298328 mevalonate kinase; Provisional 100.0
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 100.0
COG2605333 Predicted kinase related to galactokinase and meva 100.0
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 100.0
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.97
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
KOG0631489 consensus Galactokinase [Carbohydrate transport an 99.97
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.96
PLN02451370 homoserine kinase 99.96
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.94
PRK01123282 shikimate kinase; Provisional 99.93
PRK01212301 homoserine kinase; Provisional 99.93
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.92
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.92
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.91
PTZ00299336 homoserine kinase; Provisional 99.91
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.91
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.91
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.9
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.89
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.89
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.87
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 99.87
KOG4519459 consensus Phosphomevalonate kinase [Lipid transpor 99.87
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.85
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.84
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.83
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.78
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.78
PRK05905258 hypothetical protein; Provisional 99.77
COG1907312 Predicted archaeal sugar kinases [General function 99.75
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.68
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 99.63
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 99.58
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.53
COG4542293 PduX Protein involved in propanediol utilization, 99.48
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.41
PF1050952 GalKase_gal_bdg: Galactokinase galactose-binding s 99.4
PLN02407343 diphosphomevalonate decarboxylase 99.27
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.24
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 99.23
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.18
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 98.65
>PLN02677 mevalonate kinase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-62  Score=473.51  Aligned_cols=387  Identities=77%  Similarity=1.201  Sum_probs=315.0

Q ss_pred             CceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCC
Q 045151            1 MEVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFP   80 (387)
Q Consensus         1 ~~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~   80 (387)
                      |.+.++|||||+|+|||+||+|++||++|||+|+++.++++..+...+.+++.++|++..++|+.+++++..........
T Consensus         1 ~~i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~~~~~~~~~   80 (387)
T PLN02677          1 MEVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEALPDLGTPCP   80 (387)
T ss_pred             CceEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhhcccccccc
Confidence            67899999999999999999999999999999999999875211245678889999999999998887654221111111


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhhCccCeEEEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 045151           81 STPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLG  160 (387)
Q Consensus        81 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~Al~~  160 (387)
                      ..|.....+....+..++.+...++...+...++-+|||++..+.+..++++.|+|+||.|+|||||||++||++.|++.
T Consensus        81 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~  160 (387)
T PLN02677         81 STPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLA  160 (387)
T ss_pred             ccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHH
Confidence            12323445555666677765433432222234678999999988877889999999999999999999999999999999


Q ss_pred             hcCCccccccCCCccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCcccccCCCCceEEEEEeCCC
Q 045151          161 SLNSVHLDKNHQGWLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVG  240 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l~~~~~~~~ll~~t~~~  240 (387)
                      +++..+.+....++..+++.++++|+++|+.+|+.+||++||+|+++++|||++.|++++.++++.+.+++++|+||+++
T Consensus       161 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~I~f~~~~~~~l~~~~~l~llv~dTgv~  240 (387)
T PLN02677        161 ASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGELTRLQSNMPLKMLITNTRVG  240 (387)
T ss_pred             HhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCeEEEcCCCceecCCCCCceEEEEECCCC
Confidence            99831110000011124555677899999999999999999999999999999999988888888777899999999999


Q ss_pred             CChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 045151          241 RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQGLLQCMGVSHSSIETV  320 (387)
Q Consensus       241 ~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~l~~~~~s~p~l~~l  320 (387)
                      ++|+++|+.|++++++.|+.++.++++++++++++.++++....+....++|++.|+++|+.||.+|+.+|+++|.++.+
T Consensus       241 ~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGVS~~~le~i  320 (387)
T PLN02677        241 RNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGVSHSSIETV  320 (387)
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            99999999999999889998889999999999999999986322211123578999999999999999999999999999


Q ss_pred             HHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEeccCC
Q 045151          321 LRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCFGGLS  387 (387)
Q Consensus       321 ~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~~~~~  387 (387)
                      +++++++++++|+||||+|||+++|++++..++.++++.++|+++|+++|.++++.+||+|.-.+.|
T Consensus       321 v~~a~~~~~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~G~~~~~~~~g~~Gv~~~~~~~~  387 (387)
T PLN02677        321 LRTTLKYKLVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESSGFQCFTAGIGGNGVQICYGGCS  387 (387)
T ss_pred             HHHHHHcCCccccccCCCCCEEEEEcccccchhHHHHHHHHHHHCCCeEEEEEeCCCceEEEecccC
Confidence            9999998999999999999999999987555667889999999999999999999999999876654

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism] Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry [] Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
2r3v_A396 The Biochemical And Structural Basis For Feedback I 1e-52
1kvk_A395 The Structure Of Binary Complex Between A Mammalian 3e-45
4hac_A321 Crystal Structure Of The Mevalonate Kinase From An 2e-12
4hac_B321 Crystal Structure Of The Mevalonate Kinase From An 2e-12
1kkh_A317 Crystal Structure Of The Methanococcus Jannaschii M 3e-08
1vis_A324 Crystal Structure Of Mevalonate Kinase Length = 324 3e-08
2hfu_A332 Crystal Structure Of L. Major Mevalonate Kinase In 4e-08
2hfs_A332 Crystal Structure Of L. Major Mevalonate Kinase Len 4e-08
>pdb|2R3V|A Chain A, The Biochemical And Structural Basis For Feedback Inhibition Of Mevalonate Kinase And Isoprenoid Metabolism Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 202/385 (52%), Gaps = 25/385 (6%)
Query: 7   APGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPXXXXXXXTLKLVLKDMELNFSWSVT 66
           APGK+IL GEHAVVHG  A+A  ++L T++ L+          + L L ++ +  +W V 
Sbjct: 10  APGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIKRAWDVA 65
Query: 67  RIKA-TLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII 125
           R+++   S L     +TPT+  +E +K +A L D+  + E    L     AFL+LY SI 
Sbjct: 66  RLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVL-----AFLYLYLSIC 120
Query: 126 GFKPA----TVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSV-HLDKNHQGWLTYGES 180
             + A     +VV S+LP GAGLGSSAA+ V L AALL     + +  K+      + + 
Sbjct: 121 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE 180
Query: 181 DLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITNTKVG 240
           DL+L+NKWAF+GE++IHG PSG+DN VST+G  +++  G ++ +K +  L++L+TNTKV 
Sbjct: 181 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP 240
Query: 241 RNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTII----ESPTPDDLSITXXXXXX 296
           RNTRALVAGV  R ++ P+ ++ +  ++D+IS E   ++    E+P P+   +       
Sbjct: 241 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLV------L 294
Query: 297 XXXXXXNQGLLQCMGVSHSSIETVLRTTLKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 356
                 NQ  L  +GV H+S++ + + T                                
Sbjct: 295 EELIDMNQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVE 354
Query: 357 XXXXXXXXCGFQCLIAGIGGTGVEV 381
                   CGF CL   IG  GV +
Sbjct: 355 ATKQALTSCGFDCLETSIGAPGVSI 379
>pdb|1KVK|A Chain A, The Structure Of Binary Complex Between A Mammalian Mevalonate Kinase And Atp: Insights Into The Reaction Mechanism And Human Inherited Disease Length = 395 Back     alignment and structure
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An Archaeon Methanosarcina Mazei Length = 321 Back     alignment and structure
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An Archaeon Methanosarcina Mazei Length = 321 Back     alignment and structure
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Mevalonate Kinase Length = 317 Back     alignment and structure
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase Length = 324 Back     alignment and structure
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex With R-Mevalonate Length = 332 Back     alignment and structure
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase Length = 332 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 7e-96
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 1e-76
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 3e-73
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 9e-71
3k17_A365 LIN0012 protein; protein structure initiative II(P 1e-64
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 1e-59
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 1e-47
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 3e-28
1pie_A419 Galactokinase; galactose, galactosemia, transferas 3e-16
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 3e-15
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 6e-13
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 6e-09
3v2u_C 520 Protein GAL3; rossmann fold, GHMP superfamily, tra 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
 Score =  290 bits (744), Expect = 7e-96
 Identities = 147/385 (38%), Positives = 216/385 (56%), Gaps = 17/385 (4%)

Query: 3   VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFS 62
           +   APGK+IL GEHAVVHG  A+A  ++L T++ LR       +  + L L ++ +   
Sbjct: 6   LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQ----SNGKVSLNLPNVGIKQV 61

Query: 63  WSVTRIK-ATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLY 121
           W V  ++      L       PT   +E +K +A L  +    E          AFL+LY
Sbjct: 62  WDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEG-----LSLLAFLYLY 116

Query: 122 TSII----GFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQGWL-T 176
            +I           ++V S+LP GAGLGSSAA+ V + AALL +   V      +G + +
Sbjct: 117 LAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGS 176

Query: 177 YGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIKSNMPLKMLITN 236
           + E DL  +NKWA+EGE++IHG PSG+DN+VST+G  ++++ G M+ +K    L++L+TN
Sbjct: 177 WPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTN 236

Query: 237 TKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERL 296
           TKV R+T+ALVAGV  R ++ P+ M+ +  ++D+IS E   ++       +   E+   L
Sbjct: 237 TKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVP--EQYLVL 294

Query: 297 EELMEMNQGLLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVE 356
           EELM+MNQ  L  +GV H+S++ + + T    L SKLTGAGGGGC +TLL   L    VE
Sbjct: 295 EELMDMNQHHLNALGVGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVE 354

Query: 357 KVTTELETCGFQCLIAGIGGTGVEV 381
                L  CGF C    IG  GV +
Sbjct: 355 AAKQALTGCGFDCWETSIGAPGVSM 379
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 100.0
3k17_A365 LIN0012 protein; protein structure initiative II(P 100.0
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 100.0
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 100.0
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 100.0
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 100.0
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 100.0
1pie_A419 Galactokinase; galactose, galactosemia, transferas 100.0
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 100.0
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 100.0
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 100.0
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 100.0
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 100.0
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 100.0
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 100.0
1h72_C296 HK, homoserine kinase; transferase, threonine bios 100.0
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.96
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 99.95
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.95
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.95
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.94
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 99.85
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 99.79
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 99.78
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 99.7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
Probab=100.00  E-value=4.8e-52  Score=407.73  Aligned_cols=361  Identities=38%  Similarity=0.631  Sum_probs=272.4

Q ss_pred             ceEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCC
Q 045151            2 EVKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPS   81 (387)
Q Consensus         2 ~~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   81 (387)
                      +++++|||||+|+|||+||||+++|++|||+|+++.++++    +++.+++.+.+.+...+|+++++.........  ..
T Consensus         5 ~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~   78 (395)
T 1kvk_A            5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQ----SNGKVSLNLPNVGIKQVWDVATLQLLDTGFLE--QG   78 (395)
T ss_dssp             CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEC----SSSEEEEEETTTTEEEEEEHHHHHTSCC--------
T ss_pred             cEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEEC----CCCeEEEEcCCCCceEEEEhHhhhhhhccccc--cc
Confidence            4789999999999999999999999999999999999985    56788998887765567777765321000000  00


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCcccccccchhHHHHHHHHHhhh-C---ccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151           82 TPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYTSII-G---FKPATVVVTSDLPLGAGLGSSAAFCVSLTAA  157 (387)
Q Consensus        82 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~---~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A  157 (387)
                      .+....++....+..+.....  ...+-...++..+++.+.... .   ..|++|.++++||.++|||||||+++|++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~a  156 (395)
T 1kvk_A           79 DVPAPTLEQLEKLKKVAGLPR--DCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAA  156 (395)
T ss_dssp             ----------CHHHHHHTSSC--CCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcccc--ccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHHHH
Confidence            000000000011111110000  000000013344444333221 2   5689999999999999999999999999999


Q ss_pred             HHHhcCC-----ccccccCCCccccC-------cCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCccccc
Q 045151          158 LLGSLNS-----VHLDKNHQGWLTYG-------ESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIK  225 (387)
Q Consensus       158 l~~~~~~-----~~~~~~~~~~~~l~-------~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l~  225 (387)
                      ++.+++.     +           ++       +.++.+|+++|+.+|+.++|.+||+|++++++||++.++++.+++++
T Consensus       157 l~~l~~~~~~~~~-----------l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~~~~~l~  225 (395)
T 1kvk_A          157 LLTACEEVTNPLK-----------DRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLK  225 (395)
T ss_dssp             HHHHTTSSCCGGG-----------GCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCEEECS
T ss_pred             HHHHhCccccccc-----------ccccccccchhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEEcCCCceecc
Confidence            9999997     3           56       56678889999999999999999999999999999888777778887


Q ss_pred             CCCCceEEEEEeCCCCChHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHH
Q 045151          226 SNMPLKMLITNTKVGRNTRALVAGVSERSMRHPDAMSSVFNAVDSISKELSTIIESPTPDDLSITEKEERLEELMEMNQG  305 (387)
Q Consensus       226 ~~~~~~~ll~~t~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~  305 (387)
                      .++++++++++|+.+++|+++++.+++.....|+.++..+++++++..++.+++...  .....++|++.|+++|+++|+
T Consensus       226 ~~~~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~al~~~d~~~lg~lm~~~~~  303 (395)
T 1kvk_A          226 RLPALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEM--AAAPVPEQYLVLEELMDMNQH  303 (395)
T ss_dssp             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCchHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--hccccHHHHHHHHHHHHHHHH
Confidence            777899999999999999998887776554455545556777777777776665320  001235899999999999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHhhcCCcccccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHCCceEEEeeecCCceEEEe
Q 045151          306 LLQCMGVSHSSIETVLRTTLKFKLASKLTGAGGGGCALTLLPTLLSATVVEKVTTELETCGFQCLIAGIGGTGVEVCF  383 (387)
Q Consensus       306 ~l~~~~~s~p~l~~l~~~a~~~g~gaklsGaG~Gg~v~al~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~G~~v~~  383 (387)
                      .++.+++++|+++++++.+++.|.|+||||||||||+++|++++..++.++++.+.|++.|+.+|.++++++|++|..
T Consensus       304 ~l~~~~~~~p~l~~l~~~a~~~Gaga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~v~~  381 (395)
T 1kvk_A          304 HLNALGVGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMHS  381 (395)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHTTCEEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEEC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHcCCceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEEEecCCCcEEEEe
Confidence            999889999999999999999887999999999999999999877778888999999999999999999999999874
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1kvka1225 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus 1e-47
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 2e-37
d1kkha1180 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met 1e-23
d1k47a1194 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) 1e-20
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 5e-17
d1wuua1215 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi 1e-13
d1k47a2135 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM 7e-13
d1s4ea1176 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ 3e-10
d1piea1205 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact 1e-08
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 3e-06
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 8e-05
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 2e-04
d1h72c1163 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met 0.003
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  159 bits (403), Expect = 1e-47
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 3   VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFS 62
           +   APGK+IL GEHAVVHG  A+A  ++L T++ LR       +  + L L ++ +   
Sbjct: 6   LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLR----PQSNGKVSLNLPNVGIKQV 61

Query: 63  WSVTRIKATLSHLGSPFPSTPTTCSMEVIKSIAVLVDEQNIPEAKIGLSSGATAFLWLYT 122
           W V  ++   +           T            +    +    + L +    +L +  
Sbjct: 62  WDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICR 121

Query: 123 SIIGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAALLGSLNSVHLDKNHQG-WLTYGESD 181
                    ++V S+LP GAGLGSSAA+ V + AALL +   V      +G   ++ E D
Sbjct: 122 KQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEED 181

Query: 182 LDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCIK 225
           L  +NKWA+EGE++IHG PSG+DN+VST+G  ++++ G M+ +K
Sbjct: 182 LKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLK 225
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180 Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135 Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176 Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205 Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 100.0
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.98
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.98
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.97
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.96
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.95
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.83
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.81
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.8
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.78
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.74
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.25
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.09
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 98.88
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.59
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.1
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 97.83
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.2e-33  Score=248.50  Aligned_cols=213  Identities=37%  Similarity=0.636  Sum_probs=145.5

Q ss_pred             eEEEcCceEEEEeccceeeCCeeeEeeeccceEEEEEccCCCCCCCcEEEEecCCCceeeeehhhHHhhhccCCCCCCCC
Q 045151            3 VKARAPGKIILAGEHAVVHGSTAVAACIDLYTYVSLRFPSDSDDDDTLKLVLKDMELNFSWSVTRIKATLSHLGSPFPST   82 (387)
Q Consensus         3 ~~~~APgkv~L~GEh~~~~g~~~l~~ai~~~~~~~v~~~~~~~~~~~v~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   82 (387)
                      +.++|||||+|+|||+||+|++||++|||+|+++.++++    ++++++|.+.+++.+..|++.+...... ........
T Consensus         6 ~~vsAPGKv~L~GEh~v~~G~~al~~ai~~~~~v~v~~~----~~~~v~i~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~   80 (225)
T d1kvka1           6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQ----SNGKVSLNLPNVGIKQVWDVATLQLLDT-GFLEQGDV   80 (225)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEC----SSSEEEEEETTTTEEEEEEHHHHHTSCC---------
T ss_pred             EEEEeceEEEEEeCceeecCCCEEEEEecccEEEEEEEC----CCCeEEEEECCCCcceEEeccccccccc-cccccccc
Confidence            679999999999999999999999999999999999986    6789999999998888888766543210 00000000


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCcccccccc-hhHHHHHHHHHhh----hCccCeEEEEEecCCCCCCCChhHHHHHHHHHH
Q 045151           83 PTTCSMEVIKSIAVLVDEQNIPEAKIGLS-SGATAFLWLYTSI----IGFKPATVVVTSDLPLGAGLGSSAAFCVSLTAA  157 (387)
Q Consensus        83 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~----~~~~~~~i~i~s~iP~g~GLGSSaA~~va~~~A  157 (387)
                      +. ...+....+....   ..+....... .++..|+..+...    ....|+++.++|++|.++|||||||++||++.|
T Consensus        81 ~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~lP~g~GLGSSAAl~va~~~a  156 (225)
T d1kvka1          81 PA-PTLEQLEKLKKVA---GLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAA  156 (225)
T ss_dssp             ---------CHHHHHH---TSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHH
T ss_pred             Cc-chhhhhhhHhhhh---ccccccchhhhhHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCCcccccchHHHHHHHHH
Confidence            00 0000011111111   1111111111 1233333322222    245789999999999999999999999999999


Q ss_pred             HHHhcCCccccccCCC-ccccCcCcHHHHHHHHHhhhhhHhcCCCcccceeEeecceEEEeCCCcccc
Q 045151          158 LLGSLNSVHLDKNHQG-WLTYGESDLDLLNKWAFEGEKIIHGKPSGLDNTVSTYGNIIKFRSGNMTCI  224 (387)
Q Consensus       158 l~~~~~~~~~~~~~~~-~~~l~~~~l~~i~~~a~~~E~~~~g~~sG~D~~~~~~Gg~i~~~~~~~~~l  224 (387)
                      ++.+++....+..+.. ....++.++++|+++|+.+|+.+||++||+|+++++|||++.|++++++++
T Consensus       157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG~D~a~~~~Gg~i~f~~g~~~~l  224 (225)
T d1kvka1         157 LLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSL  224 (225)
T ss_dssp             HHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCEEEC
T ss_pred             HHHHhCcccCccccchhccccchhhHHHHHHHHHHHHHHhCCCCcHHHHHHHhcCceEEEeCCCCCcC
Confidence            9999987511110000 111234567899999999999999999999999999999999998876654
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure