Citrus Sinensis ID: 045155

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
MTVVQTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVNVHAMALENSDVPYDLSVDRIRICSGCTSPVNFLQQFGYSSSSKNVKRHRNDMFFEGSRDDSTHQNGIQEMDNASNMNMQFMEPNMGNKELQQGNYDDLNKDLIKPDQNNNNNNNGRSDSISDCSDQIDDLEDDVKYRPRRNGKEPQSKNLVAERKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELKEELEENSDDDGAAKNDDMGISVNNHNAVKSESLTQNGTNFGPKTEPKQCHMGNGRKQDQDSGNTIDKGQQMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIENVAKASDSTVNNGINYHHHEQHLHSHHMSTHHHHLHHN
cccHHHHHHHHHHHHcccccEEEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHcccccEEEcccccccHHHHHHHccEEEEEEEcccEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccc
ccHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEcccccccccccccccccEEEcccccccccccHHccccccHHHHHHHcccccccccccccHHEEEccccEEEEccccccHHHHHHHcEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccEEEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHccccccccHHccccccccHcccccHHHcccccccccccccccccccc
MTVVQTLMDRLrplvglkgwdyCVLWKLSDDQRFIAWIDCCCagiegtqnddgdelhfpvspflpcrdvifphprtkscellsqlpssmpldsgiyAQSLisnqprwlnfsnsadLEVMEETLWTRVLIPIMGGLIELFatkevsedphVIDFIIAQCNismeqdpmnmntscyldnasssvNVHAMAlensdvpydlsvdriricsgctspvnflqqfgyssssknvkrhrndmffegsrddsthqngiqemdnasnmnmqfmepnmgnkelqqgnyddlnkdlikpdqnnnnnnngrsdsisdcsdqiddleddvkyrprrngkepqsknLVAERKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELKEELeensdddgaaknddmgisvnnhnavksesltqngtnfgpktepkqchmgngrkqdqdsgntidkgQQMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGlevtnanvtsrtglVSNVFnvkkrdnemvqADHVRDSLLELTRNPAREWIENVAKAsdstvnnginyhhheqhlhshhmsthhhhlhhn
mtvvqtlmdrlrplvglkgWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVNVHAMALENSDVPYDLSVDRIRICSGCTSPVNFLQQfgyssssknvkRHRNDMFFegsrddsthqNGIQEMDNASNMNMQFMEPNMGNKELQQGNYDDLNKDLIKpdqnnnnnnngrsdsisdcsdqIDDLEDdvkyrprrngkepqsknlvaerkrrkklndrlyalralvpiitkldrATILVDAIEYVKQLQKQEKELKEELeensdddgaaknDDMGISVNNhnavksesltqngtnfgpktepkqchmgnGRKQDQDSGNTIDKGQQMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEvtnanvtsrtglvsnvfnvkkrdnemvqaDHVRDSLLELTRNPAREWIENVAKASDSTVNNGINYHHHEQHLHSHHMSTHHHHLHHN
MTVVQTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVNVHAMALENSDVPYDLSVDRIRICSGCTSPVNFLQQFGYSSSSKNVKRHRNDMFFEGSRDDSTHQNGIQEMDNASNMNMQFMEPNMGNKELQQGNYDDLNKDLIKPDQnnnnnnnGRsdsisdcsdqiddLEDDVKYRPRRNGKEPQSKNLVAERKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVkqlqkqekelkeeleeNSDDDGAAKNDDMGISVNNHNAVKSESLTQNGTNFGPKTEPKQCHMGNGRKQDQDSGNTIDKGQQMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIENVAKASDSTVNNGINYhhheqhlhshhmsthhhhlhhN
****QTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLS*******LDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVNVHAMALENSDVPYDLSVDRIRICSGCTSPVNFLQQFGY**************************************************************************************************************************NDRLYALRALVPIITKLDRATILVDAIEYVKQ*********************************************************************************VQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIENVA***********************************
*****TL*DRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCA*******************************RTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIA**NISM******MNTSCYLDNASSSVNVHAMALENSDVPY************************************************************************************************************************************************KKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQK**********************************************************************************VAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRD*****ADHVRDSLLELT***************************HEQHLHSH************
MTVVQTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVNVHAMALENSDVPYDLSVDRIRICSGCTSPVNFLQQFGYSSSSKNVKRHRNDMFFEGSRDDSTHQNGIQEMDNASNMNMQFMEPNMGNKELQQGNYDDLNKDLIKPDQNNNNNNNGRSDSISDCSDQIDDLEDDVKYRPRRNGKEPQSKNLVAERKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKE************GAAKNDDMGISVNNHNAVKSESLTQNGTNFGPKTEP****************NTIDKGQQMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIENVAKASDSTVNNGINYHHHE******************
MTVVQTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIE*******DELHFPVSPFLPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDP****************************PYDL*VDRIRICSGCTSPV*********************************************************************************************************************K*LVAERKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELKEELEE****************************************************************QMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIENVAKASDST*NNGINYHHHEQHLHSHHMSTHHHHLHHN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTVVQTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPFLPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVNVHAMALENSDVPYDLSVDRIRICSGCTSPVNFLQQFGYSSSSKNVKRHRNDMFFEGSRDDSTHQNGIQEMDNASNMNMQFMEPNMGNKELQQGNYDDLNKDLIKPDQNNNNNNNGRSDSISDCSDQIDDLEDDVKYRPRRNGKEPQSKNLVAERKRRKKLNDRLYALRALVPIITKLDRATIxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGAAKNDDMGISVNNHNAVKSESLTQNGTNFGPKTEPKQCHMGNGRKQDQDSGNTIDKGQQMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIENVAKASDSTVNNGINYHHHEQHLHSHHMSTHHHHLHHN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query582 2.2.26 [Sep-21-2011]
Q9ZVX2571 Transcription factor ABOR yes no 0.876 0.893 0.463 1e-125
Q0WNR2441 Transcription factor bHLH no no 0.256 0.337 0.384 6e-23
Q9LSE2494 Transcription factor ICE1 no no 0.309 0.364 0.336 8e-23
Q9LPW3450 Transcription factor SCRE no no 0.281 0.364 0.345 5e-21
Q2HIV9248 Transcription factor bHLH no no 0.278 0.653 0.312 4e-18
Q9FIP9592 Transcription factor ATR2 no no 0.257 0.253 0.302 1e-14
Q0V7X4318 Transcription factor FER- no no 0.256 0.468 0.302 2e-14
O81900207 Transcription factor DYSF no no 0.298 0.840 0.280 4e-14
Q700E3263 Transcription factor bHLH no no 0.292 0.646 0.284 2e-13
O49687589 Transcription factor MYC4 no no 0.300 0.297 0.299 5e-13
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2 Back     alignment and function desciption
 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 270/583 (46%), Positives = 361/583 (61%), Gaps = 73/583 (12%)

Query: 4   VQTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVSPF 63
           +Q L+++LRPLVG + WDYCVLW+L++DQRF+ W+ CCC G E    +  +E  +     
Sbjct: 5   MQNLLEKLRPLVGARAWDYCVLWRLNEDQRFVKWMGCCCGGTELIAENGTEEFSYG---- 60

Query: 64  LPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETL 123
             CRDV+F HPRTKSCE LS LP+S+PLDSGIYA++L++NQ  WL  S S++   M+ET+
Sbjct: 61  -GCRDVMFHHPRTKSCEFLSHLPASIPLDSGIYAETLLTNQTGWL--SESSEPSFMQETI 117

Query: 124 WTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQDPMNMNTSCYLDNASSSVN 183
            TRVLIPI GGL+ELFAT+ V+ED +V+DF++  CN+ M+ D + +N     +  S    
Sbjct: 118 CTRVLIPIPGGLVELFATRHVAEDQNVVDFVMGHCNMLMD-DSVTINMMVADEVESKPYG 176

Query: 184 VHAMALE----------NSDVPYDLSVDRIRICSGCTSPVNFLQQFG-YSSSSKNVKR-- 230
           + +  ++          N    YD+S D+IR+        NFL Q   Y +    +K   
Sbjct: 177 MLSGDIQQKGSKEEDMMNLPSSYDISADQIRL--------NFLPQMSDYETQHLKMKSDY 228

Query: 231 HRNDMFFEGSRDDSTHQNGIQEMDNASNMNMQ-------FMEPNMGNKELQQGNYDDLNK 283
           H   + +         +NG +EM   +  N           EP++   E Q  N  D+N+
Sbjct: 229 HHQALGY-------LPENGNKEMMGMNPFNTVEEDGIPVIGEPSLLVNEQQVVNDKDMNE 281

Query: 284 DLIKPDQNNNNNNNGRSDSISDCSDQIDDLEDDVKYRPRRNGKEPQSKNLVAERKRRKKL 343
                        NGR DS SDCSDQIDD EDD     +++GK  Q+KNL+AER+RRKKL
Sbjct: 282 -------------NGRVDSGSDCSDQIDD-EDD-PKYKKKSGKGSQAKNLMAERRRRKKL 326

Query: 344 NDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELKEELEENSDDDGAAKNDDMG 403
           NDRLYALR+LVP ITKLDRA+IL DAI YVK+LQ + KEL++ELEENS+ +  +     G
Sbjct: 327 NDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETEDGSNRPQGG 386

Query: 404 ISVNNHNAVKSESLTQNGTNFGPKTEPKQCHMG-NGRKQDQDSGNTIDKGQQMEVQVEVA 462
           +S+N              T F P      C+      KQD D  N+ DKGQ+ME QV+VA
Sbjct: 387 MSLNGTVV----------TGFHPGL---SCNSNVPSVKQDVDLENSNDKGQEMEPQVDVA 433

Query: 463 QLNGNEFFIKVFCEHKPGGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMV 522
           QL+G EFF+KV CE+KPGGF RLMEAL+SLGLEVTNAN T    LVSNVF V+K DNEMV
Sbjct: 434 QLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEKNDNEMV 493

Query: 523 QADHVRDSLLELTRNPAREWIEN-VAKASDSTVNNGINYHHHE 564
           QA+HVR+SLLE+TRN +R W ++ +A  S     N ++Y H++
Sbjct: 494 QAEHVRNSLLEITRNTSRGWQDDQMATGSMQNEKNEVDYQHYD 536
Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WNR2|BH090_ARATH Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1 Back     alignment and function description
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1 Back     alignment and function description
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1 Back     alignment and function description
>sp|O81900|DYT1_ARATH Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1 Back     alignment and function description
>sp|Q700E3|BH027_ARATH Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
225425507612 PREDICTED: transcription factor ABORTED 0.914 0.869 0.541 1e-160
255560535576 transcription factor, putative [Ricinus 0.915 0.925 0.53 1e-158
255560537593 hypothetical protein RCOM_0978110 [Ricin 0.874 0.858 0.551 1e-157
359474845624 PREDICTED: transcription factor ABORTED 0.914 0.852 0.536 1e-154
297739024545 unnamed protein product [Vitis vinifera] 0.836 0.893 0.555 1e-153
449450159623 PREDICTED: transcription factor ABORTED 0.865 0.808 0.517 1e-145
356534418571 PREDICTED: transcription factor ABORTED 0.912 0.929 0.464 1e-133
297744597573 unnamed protein product [Vitis vinifera] 0.841 0.855 0.502 1e-132
356574149529 PREDICTED: transcription factor ABORTED 0.879 0.967 0.473 1e-130
22325727571 transcription factor ABORTED MICROSPORES 0.876 0.893 0.463 1e-123
>gi|225425507|ref|XP_002263966.1| PREDICTED: transcription factor ABORTED MICROSPORES-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 321/593 (54%), Positives = 413/593 (69%), Gaps = 61/593 (10%)

Query: 1   MTVVQTLMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPV 60
           + +VQ+L +RLRPLVGLK WDYCVLWKLS+DQRF+ W+DCCCAG E +  +  +E+ FPV
Sbjct: 2   VNMVQSLKERLRPLVGLKSWDYCVLWKLSEDQRFLDWMDCCCAGSENSTQNGEEEILFPV 61

Query: 61  SPFLPCRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVME 120
           S  LPCRD +  HPRTKSC+LL+QLPSS+ LDSGI+ Q+LISNQPRWLNF NS+D  V+E
Sbjct: 62  SSVLPCRDAMLQHPRTKSCDLLAQLPSSISLDSGIHGQTLISNQPRWLNFCNSSDSSVLE 121

Query: 121 ETLWTRVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNIS-MEQDPMNMNTSCYLDNAS 179
           ET+ TR+LIP++GGLIELF   +V+ED HV++F+  QCNI  MEQ+ M MN+S    +  
Sbjct: 122 ETVGTRLLIPVLGGLIELFVANQVAEDQHVVNFVTTQCNIILMEQEAM-MNSSNI--DTI 178

Query: 180 SSVNVHA--------------------MALEN-SDVPYDLSVDRIRICSGCTSPVNFLQQ 218
            SVN +A                     ALEN +D+P+D+SV+RIR+CS   SP+NFLQQ
Sbjct: 179 FSVNANAGNADEEKDPNNHFQATISPVTALENLNDLPFDISVERIRLCS---SPMNFLQQ 235

Query: 219 FGYSSSSKNVKRHRNDMFFEGSRDDSTHQNGIQEMDNASNMNMQFMEPNMGNKELQQGNY 278
           F Y+S S      +ND+FFEGS D S     +     +S+   Q ME    +  +   N 
Sbjct: 236 FSYTSESS----VKNDIFFEGS-DGSFLSEKVINPFMSSDCGFQEMEAMQKSMMVCTNNS 290

Query: 279 DDLNKDLIKPDQNNNNNNNGRSDSISDCSDQIDDLE---------DDVKYRPRRNGKEPQ 329
            ++++++++P  N     + +  S    ++Q D +          DD+KYR RR GK  Q
Sbjct: 291 KNMHREMMEPLANKEQLGDDKDSSTKQMANQADSVSDCSDQIDDDDDLKYR-RRTGKGTQ 349

Query: 330 SKNLVAERKRRKKLNDRLYALRALVPIITKLDRATILVDAIEYVKQLQKQEKELKEELEE 389
           SKNLVAER+RRKKLNDRLYALRALVP I+KLDRA+IL DAIE+VK+LQKQ K+L++ELEE
Sbjct: 350 SKNLVAERRRRKKLNDRLYALRALVPKISKLDRASILGDAIEFVKELQKQAKDLQDELEE 409

Query: 390 NSDDDGAAKNDDMGISVNNHNAVKSESLTQNGT--NFGPKTEPKQC----HM---GNGR- 439
           +SDD+G   N   GI+ +NHN V+SE L  +G+  N G KTE ++     HM   GNG  
Sbjct: 410 HSDDEGGKIN--AGIN-SNHNNVQSEILNNDGSGVNIGSKTENEEAQNGIHMGEAGNGSA 466

Query: 440 ----KQDQDSGNT-IDKGQQMEVQVEVAQLNGNEFFIKVFCEHKPGGFVRLMEALNSLGL 494
               KQ+ ++     DK QQME QVEVAQ+ GNEFF+KVFCEHK GGF RLMEAL+SLGL
Sbjct: 467 CRLPKQNHETDQINNDKAQQMEPQVEVAQIEGNEFFVKVFCEHKAGGFARLMEALSSLGL 526

Query: 495 EVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPAREWIENVA 547
           EVTNANVTS  GLVSNVF V+KRD+EMVQADHVRDSLLELT++P+ +W + +A
Sbjct: 527 EVTNANVTSCKGLVSNVFKVEKRDSEMVQADHVRDSLLELTKSPSEKWSDQMA 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255560535|ref|XP_002521282.1| transcription factor, putative [Ricinus communis] gi|223539550|gb|EEF41138.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255560537|ref|XP_002521283.1| hypothetical protein RCOM_0978110 [Ricinus communis] gi|223539551|gb|EEF41139.1| hypothetical protein RCOM_0978110 [Ricinus communis] Back     alignment and taxonomy information
>gi|359474845|ref|XP_002277897.2| PREDICTED: transcription factor ABORTED MICROSPORES-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739024|emb|CBI28513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450159|ref|XP_004142831.1| PREDICTED: transcription factor ABORTED MICROSPORES-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356534418|ref|XP_003535752.1| PREDICTED: transcription factor ABORTED MICROSPORES-like [Glycine max] Back     alignment and taxonomy information
>gi|297744597|emb|CBI37859.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574149|ref|XP_003555214.1| PREDICTED: transcription factor ABORTED MICROSPORES-like [Glycine max] Back     alignment and taxonomy information
>gi|22325727|ref|NP_179283.2| transcription factor ABORTED MICROSPORES [Arabidopsis thaliana] gi|218563495|sp|Q9ZVX2.2|AMS_ARATH RecName: Full=Transcription factor ABORTED MICROSPORES; AltName: Full=Basic helix-loop-helix protein 21; Short=AtbHLH21; Short=bHLH 21; AltName: Full=Transcription factor EN 48; AltName: Full=bHLH transcription factor bHLH021 gi|330251459|gb|AEC06553.1| transcription factor ABORTED MICROSPORES [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
TAIR|locus:2039445571 AMS "AT2G16910" [Arabidopsis t 0.797 0.812 0.424 2.6e-86
UNIPROTKB|Q6YUS3552 OSJNBb0088N06.15 "BHLH protein 0.378 0.398 0.459 8.1e-66
TAIR|locus:2020003441 AT1G10610 "AT1G10610" [Arabido 0.256 0.337 0.384 1.2e-38
TAIR|locus:2090847494 ICE1 "AT3G26744" [Arabidopsis 0.075 0.089 0.704 1.7e-16
UNIPROTKB|Q2R3F6524 Os11g0523700 "Helix-loop-helix 0.075 0.083 0.727 3e-14
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.099 0.111 0.459 1.3e-13
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.099 0.082 0.453 5e-13
TAIR|locus:2141206207 DYT1 "AT4G21330" [Arabidopsis 0.077 0.217 0.555 6.7e-13
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.092 0.091 0.5 1.2e-12
UNIPROTKB|Q58GE3234 UDT1 "Undeveloped tapetum 1" [ 0.084 0.209 0.571 1.9e-12
TAIR|locus:2039445 AMS "AT2G16910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 213/502 (42%), Positives = 292/502 (58%)

Query:    66 CRDVIFPHPRTKSCELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSADLEVMEETLWT 125
             CRDV+F HPRTKSCE LS LP+S+PLDSGIYA++L++NQ  WL  S S++   M+ET+ T
Sbjct:    62 CRDVMFHHPRTKSCEFLSHLPASIPLDSGIYAETLLTNQTGWL--SESSEPSFMQETICT 119

Query:   126 RVLIPIMGGLIELFATKEVSEDPHVIDFIIAQCNISMEQD-PMNMNTSCYLDNASSSVNV 184
             RVLIPI GGL+ELFAT+ V+ED +V+DF++  CN+ M+    +NM  +  +++    +  
Sbjct:   120 RVLIPIPGGLVELFATRHVAEDQNVVDFVMGHCNMLMDDSVTINMMVADEVESKPYGMLS 179

Query:   185 HAMALENSDVPYDLSVDRIRICSGCTSPVNFLQQFG-YSSSSKNVKR--HRNDMFFEGSR 241
               +  + S     +++      S     +NFL Q   Y +    +K   H   + +    
Sbjct:   180 GDIQQKGSKEEDMMNLPSSYDISADQIRLNFLPQMSDYETQHLKMKSDYHHQALGYL-PE 238

Query:   242 DDSTHQNGIQEMDNASNMNMQFM-EPNMGNKELQQGNYDDLNKDLIKPDQXXXXXXXGRX 300
             + +    G+   +      +  + EP++   E Q  N  D+N++             GR 
Sbjct:   239 NGNKEMMGMNPFNTVEEDGIPVIGEPSLLVNEQQVVNDKDMNEN-------------GRV 285

Query:   301 XXXXXXXXXXXXLEDDVKYRPRRNGKEPQSKNLVAERKRRKKLNDRLYALRALVPIITKL 360
                          EDD KY+ +++GK  Q+KNL+AER+RRKKLNDRLYALR+LVP ITKL
Sbjct:   286 DSGSDCSDQIDD-EDDPKYK-KKSGKGSQAKNLMAERRRRKKLNDRLYALRSLVPRITKL 343

Query:   361 DRATILVDAIEYVXXXXXXXXXXXXXXXXNSDDDGAAKNDDMGISVNNHNAVKSESLTQN 420
             DRA+IL DAI YV                NS+ +  +     G+S+N    V        
Sbjct:   344 DRASILGDAINYVKELQNEAKELQDELEENSETEDGSNRPQGGMSLNG-TVV-------- 394

Query:   421 GTNFGPKTEPKQCHMG-NGRKQDQDSGNTIDKGQQMEVQVEVAQLNGNEFFIKVFCEHKP 479
              T F P      C+      KQD D  N+ DKGQ+ME QV+VAQL+G EFF+KV CE+KP
Sbjct:   395 -TGFHPGLS---CNSNVPSVKQDVDLENSNDKGQEMEPQVDVAQLDGREFFVKVICEYKP 450

Query:   480 GGFVRLMEALNSLGLEVTNANVTSRTGLVSNVFNVKKRDNEMVQADHVRDSLLELTRNPA 539
             GGF RLMEAL+SLGLEVTNAN T    LVSNVF V+K DNEMVQA+HVR+SLLE+TRN +
Sbjct:   451 GGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEKNDNEMVQAEHVRNSLLEITRNTS 510

Query:   540 REWIEN-VAKASDSTVNNGINY 560
             R W ++ +A  S     N ++Y
Sbjct:   511 RGWQDDQMATGSMQNEKNEVDY 532
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009555 "pollen development" evidence=IMP
GO:0048658 "tapetal layer development" evidence=IMP
UNIPROTKB|Q6YUS3 OSJNBb0088N06.15 "BHLH protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2020003 AT1G10610 "AT1G10610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090847 ICE1 "AT3G26744" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2R3F6 Os11g0523700 "Helix-loop-helix DNA-binding domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2141206 DYT1 "AT4G21330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q58GE3 UDT1 "Undeveloped tapetum 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZVX2AMS_ARATHNo assigned EC number0.46310.87620.8931yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 4e-18
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 4e-13
smart0035353 smart00353, HLH, helix loop helix domain 1e-12
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 3e-10
cd0490073 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU 0.001
cd0487370 cd04873, ACT_UUR-ACR-like, ACT domains of the bact 0.004
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score = 81.5 bits (202), Expect = 4e-18
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 27/169 (15%)

Query: 7   LMDRLRPLVGLKGWDYCVLWKLSDDQRFI-AWIDCCCAGIEGTQNDDGD----------- 54
           L  RL+ LV  + W Y + W+LS DQ  +  W D    G   T+    +           
Sbjct: 1   LQQRLQALVESEQWSYAIFWQLSPDQSGVLGWGDGYYNGEIKTRKTVAEELGLQRKKVLR 60

Query: 55  ELHFPVSPFLPCRDVIFPHP-RTKSCE--LLSQLPSSMPLDSGIYAQSLISNQPRWLNFS 111
           EL+   S     RD     P      E   L  +  S P   G+  ++  S    WL+ +
Sbjct: 61  ELY---SLLSGSRDAAALSPEDLTDTEWFYLVSMTFSFPPGEGLPGKAFASGSHIWLSGA 117

Query: 112 NSADLEVMEETLW--------TRVLIPIMGGLIELFATKEVSEDPHVID 152
           N  D      + W        T V IP+ GG++EL +T+++ ED +++ 
Sbjct: 118 NELDSSNCSRS-WLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLNLVQ 165

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information
>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 582
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.21
smart0035353 HLH helix loop helix domain. 99.18
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.17
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 99.09
KOG1318411 consensus Helix loop helix transcription factor EB 98.64
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.39
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.37
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 98.23
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.19
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 98.16
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.03
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.98
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.9
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.85
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.72
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.67
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.66
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.52
PLN0321793 transcription factor ATBS1; Provisional 97.47
KOG0561373 consensus bHLH transcription factor [Transcription 97.37
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 97.06
PRK05007884 PII uridylyl-transferase; Provisional 97.04
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 97.03
PRK00275895 glnD PII uridylyl-transferase; Provisional 96.89
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.76
PRK04374869 PII uridylyl-transferase; Provisional 96.74
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.73
KOG4029228 consensus Transcription factor HAND2/Transcription 96.73
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 96.61
PRK01759854 glnD PII uridylyl-transferase; Provisional 96.54
PRK0019490 hypothetical protein; Validated 96.54
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 96.51
PRK03381774 PII uridylyl-transferase; Provisional 96.47
PRK05092931 PII uridylyl-transferase; Provisional 96.46
KOG3960284 consensus Myogenic helix-loop-helix transcription 96.41
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 96.36
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 96.23
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 96.23
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 96.2
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 96.18
PRK03381774 PII uridylyl-transferase; Provisional 96.15
PRK03059856 PII uridylyl-transferase; Provisional 96.14
PRK05007884 PII uridylyl-transferase; Provisional 95.92
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.91
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 95.85
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 95.7
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 95.42
PRK00275895 glnD PII uridylyl-transferase; Provisional 95.37
KOG3910632 consensus Helix loop helix transcription factor [T 95.05
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 95.05
PRK03059856 PII uridylyl-transferase; Provisional 95.02
PRK05092931 PII uridylyl-transferase; Provisional 94.61
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 94.41
PRK04374869 PII uridylyl-transferase; Provisional 94.25
PRK04435147 hypothetical protein; Provisional 93.83
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 93.33
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 93.33
cd0211660 ACT ACT domains are commonly involved in specifica 93.2
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 93.07
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 92.37
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 92.28
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 91.99
PRK08577136 hypothetical protein; Provisional 91.67
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 91.61
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 91.16
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 91.12
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 90.96
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 90.61
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 90.38
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 90.32
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 90.21
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 90.16
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 89.73
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 89.58
PRK07334403 threonine dehydratase; Provisional 89.48
KOG4447173 consensus Transcription factor TWIST [Transcriptio 88.72
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 87.36
PRK11589190 gcvR glycine cleavage system transcriptional repre 86.36
COG383090 ACT domain-containing protein [Signal transduction 86.32
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 85.69
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 85.65
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 84.96
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 84.64
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 84.34
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 83.71
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 82.64
CHL00100174 ilvH acetohydroxyacid synthase small subunit 82.32
PRK1356284 acetolactate synthase 1 regulatory subunit; Provis 82.01
PF05088 1528 Bac_GDH: Bacterial NAD-glutamate dehydrogenase 81.51
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 81.01
TIGR00119157 acolac_sm acetolactate synthase, small subunit. ac 80.73
COG4492150 PheB ACT domain-containing protein [General functi 80.72
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 80.61
PRK11589190 gcvR glycine cleavage system transcriptional repre 80.16
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=5.8e-41  Score=319.74  Aligned_cols=148  Identities=27%  Similarity=0.409  Sum_probs=113.2

Q ss_pred             HHHHHHhccCCCCCcEEEEeeecCCCceEEEcccccCCCCCCCCCCCCCCCCCCC-----CCCCCccC--CC-CCCCchh
Q 045155            7 LMDRLRPLVGLKGWDYCVLWKLSDDQRFIAWIDCCCAGIEGTQNDDGDELHFPVS-----PFLPCRDV--IF-PHPRTKS   78 (582)
Q Consensus         7 Lq~~Lr~Lv~~~~W~YaVFWkl~~~~~~L~W~Dg~c~g~~~~~~~~~~e~~~~~s-----~~~~~~d~--~~-~~~~t~~   78 (582)
                      |||+||+||++++|+||||||+++++++|+|+||||+|+.++.... ++.....+     +...+.+.  .. +..+++ 
T Consensus         1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~~~L~W~DG~~~g~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~v~~~e-   78 (163)
T PF14215_consen    1 LQQRLRSLVENSQWTYAVFWKLSPDNSVLVWGDGYCNGPKETRKNG-EEEQEQRSKVLRELHSSFSSYALSPEEVTDTE-   78 (163)
T ss_pred             ChHHHHHHhCCCCCcEEEEeEEcCCCCeeeEcceeecCCcccccch-hhccchhhhHHHHHhhhccccccccchhHHHH-
Confidence            7999999999999999999999999999999999999987654332 11111111     00011111  11 122444 


Q ss_pred             hhHhhcccccccCCCcceeeeeccCCceeeeccCCc----c-hHHHhh--cCCeEEEEeeCCcEEeecccccccCChHHH
Q 045155           79 CELLSQLPSSMPLDSGIYAQSLISNQPRWLNFSNSA----D-LEVMEE--TLWTRVLIPIMGGLIELFATKEVSEDPHVI  151 (582)
Q Consensus        79 ~~~l~~M~~s~~~g~G~~G~~~~sg~~~Wi~~~~~~----~-~~~~~~--gIqTiv~iPv~~GVvELGS~~~i~Ed~~~v  151 (582)
                      |||+.+|+++|  |+|+|||||++|+|+||+..+..    + ...+++  ||||||||||++|||||||+++|+||+++|
T Consensus        79 ~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~GVvELGSt~~I~Ed~~~v  156 (163)
T PF14215_consen   79 WFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNGVVELGSTEKIPEDSNLV  156 (163)
T ss_pred             HHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCCEEEeeeeeeeccCHHHH
Confidence            99999999888  99999999999999999422211    1 123333  999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 045155          152 DFIIAQC  158 (582)
Q Consensus       152 ~~vk~~f  158 (582)
                      ++||++|
T Consensus       157 ~~vk~~F  163 (163)
T PF14215_consen  157 QRVKSLF  163 (163)
T ss_pred             HHHHhhC
Confidence            9999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>CHL00100 ilvH acetohydroxyacid synthase small subunit Back     alignment and domain information
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional Back     alignment and domain information
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>TIGR00119 acolac_sm acetolactate synthase, small subunit Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-15
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 7e-15
1hlo_A80 Protein (transcription factor MAX); transcriptiona 1e-13
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 6e-13
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 1e-09
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 4e-06
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 3e-04
4f3l_A361 Mclock, circadian locomoter output cycles protein 3e-04
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 334 VAERKRRKKLNDRLYALRALVPII---TKLDRATILVDAIEYVKQLQKQEKELKEELEE 389
           V ER+RR +L    +ALR  +P +    K  +  IL  A  Y+  +Q +E++L  E + 
Sbjct: 12  VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query582
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.53
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.41
4ati_A118 MITF, microphthalmia-associated transcription fact 99.41
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.41
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.37
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.37
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.36
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.35
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.32
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.25
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.23
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.89
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.87
4f3l_A361 Mclock, circadian locomoter output cycles protein 98.66
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.56
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.34
4ath_A83 MITF, microphthalmia-associated transcription fact 98.2
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.68
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 97.22
1u8s_A192 Glycine cleavage system transcriptional repressor, 96.27
1u8s_A192 Glycine cleavage system transcriptional repressor, 96.05
2nyi_A195 Unknown protein; protein structure initiative, PSI 95.85
2nyi_A195 Unknown protein; protein structure initiative, PSI 95.83
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 95.57
1vhm_A195 Protein YEBR; structural genomics, unknown functio 93.76
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 92.58
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 92.45
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 92.32
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 92.23
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 91.66
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 91.58
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 91.03
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 90.88
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 90.62
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 90.58
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 90.2
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 90.18
2jhe_A190 Transcription regulator TYRR; aromatic hydrocarbon 90.11
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 89.7
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 87.43
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 86.3
2qyb_A181 Membrane protein, putative; GAF domain, domain of 85.33
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 84.9
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 84.77
1y7p_A 223 Hypothetical protein AF1403; structural genomics, 84.65
2pc6_A165 Probable acetolactate synthase isozyme III (small; 84.62
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 84.51
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 83.96
3hcy_A151 Putative two-component sensor histidine kinase PR; 83.7
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 83.46
2fgc_A193 Acetolactate synthase, small subunit; regulatory s 81.73
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 81.22
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 80.36
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.53  E-value=5.6e-15  Score=124.86  Aligned_cols=65  Identities=28%  Similarity=0.460  Sum_probs=61.1

Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155          328 PQSKNLVAERKRRKKLNDRLYALRALVPII-TKLDRATILVDAIEYVKQLQKQEKELKEELEENSD  392 (582)
Q Consensus       328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~~  392 (582)
                      ++..|+.+||+||++||++|..|++|||.. .|+||++||.+||+||++|+.+++.|+.+++.|..
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   71 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999987 89999999999999999999999999999888764
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 582
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 5e-14
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 2e-13
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 5e-13
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 6e-13
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 6e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 2e-11
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 3e-11
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 4e-11
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 5e-14
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 340 RKKLNDRLYALRALVPIIT-KLDRATILVDAIEYVKQLQKQEKELKEELEE 389
           R  +ND++  L+ LV     K+ ++ +L  AI+Y+K LQ+   +L++E   
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMV 51
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query582
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.37
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.36
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.34
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.27
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.25
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 97.37
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.88
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 96.07
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 93.96
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 93.83
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 93.01
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 91.97
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 91.43
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 91.01
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 85.76
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.9e-14  Score=114.84  Aligned_cols=65  Identities=28%  Similarity=0.460  Sum_probs=59.7

Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 045155          328 PQSKNLVAERKRRKKLNDRLYALRALVPII-TKLDRATILVDAIEYVKQLQKQEKELKEELEENSD  392 (582)
Q Consensus       328 ~~~~h~~~ER~RR~~in~~~~~LrsLvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~L~~~~~~l~~  392 (582)
                      ++..|+.+||+||++||+.|..|++|||.. .|++|++||.+||+||+.|+.+++.|..+...+..
T Consensus         6 kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~   71 (80)
T d1am9a_           6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999975 69999999999999999999999999998887653
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure