Citrus Sinensis ID: 045191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGGGTAYSHPDKKILHLG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
YYQQESAKLRQQIQMLQNSnrhlmgdslSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALasrnffspaiiegggtayshpdkkilhlg
Flexible Loop (DISEMBL)
yyqqesakLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRlergitrirskkheMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGggtayshpdkkilhlg
Low Complexity Region (SEG)
YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGGGTAYSHPDKKILHLG
Disordered region (IsUnstruct)
*********************************************GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGGGTAY***********
Disordered Region (DISOPRED)
YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRS************************************************KILHL*
Disordered Region (DISEMBL)
**********QQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGGGTAYSHPDKKILHLG
Disordered Region (DISPRO)
YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEG****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGGGTAYSHPDKKILHLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q38836	230	Agamous-like MADS-box pro	yes	no	1.0	0.586	0.690	7e-47
Q8RU31	265	MADS-box transcription fa	no	no	0.837	0.426	0.512	1e-30
P29385	246	Agamous-like MADS-box pro	no	no	0.725	0.398	0.615	8e-29
Q2QW53	270	MADS-box transcription fa	no	no	0.696	0.348	0.635	6e-28
Q40872	242	Floral homeotic protein A	N/A	no	0.985	0.549	0.485	5e-27
P17839	252	Floral homeotic protein A	no	no	0.925	0.496	0.488	5e-27
P29381	248	Agamous-like MADS-box pro	no	no	0.718	0.391	0.574	1e-26
Q01540	252	Floral homeotic protein A	N/A	no	0.925	0.496	0.481	2e-26
Q40704	236	MADS-box transcription fa	no	no	0.874	0.5	0.48	4e-26
Q40885	242	Floral homeotic protein A	N/A	no	0.718	0.400	0.556	6e-26

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 120/142 (84%), Gaps = 7/142 (4%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQ +QNSNR+LMGDSLSSL+VKELKQ+ENRLE+ I+RIRSKKHE+LL 
Sbjct: 89  YYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLV 148

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQAN--MVTGQELNAIHALASRNFFSPAIIE 118
           EIE  QKREIEL+NE++ LR+K+AE+ER+QQ +  MV+G E+NAI ALASRN+F+ +I+ 
Sbjct: 149 EIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALASRNYFAHSIMT 208

Query: 119 G-----GGTAYSHPDKKILHLG 135
                  G +YS PDKKILHLG
Sbjct: 209 AGSGSGNGGSYSDPDKKILHLG 230

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 92/123 (74%), Gaps = 10/123 (8%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           Y+QQE+AK+R QIQ LQN+NRHL+G+S+ ++T KELK LENRLE+GI+RIRSKKHE+L +
Sbjct: 91  YFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFS 150

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGG 120
           EIE++QKRE +L+NE++ LR+K+AE ER +  +    ++          +  +PA   GG
Sbjct: 151 EIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAED----------DEMAPAPAVGG 200

Query: 121 GTA 123
           G++
Sbjct: 201 GSS 203

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 84/104 (80%), Gaps = 6/104 (5%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQE++KLR+QI+ +QN NRH++G+SL SL  KELK LE+RLE+GI+R+RSKKHEML+A
Sbjct: 104 YYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVA 163

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIH 104
           EIE++QKREIEL+N+++ LRSKI E    QQ      QE + IH
Sbjct: 164 EIEYMQKREIELQNDNMYLRSKITERTGLQQ------QESSVIH 201

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QW53|MAD13_ORYSJ MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 85/96 (88%), Gaps = 2/96 (2%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLR QIQMLQN+N+HL+GD++S+L++KELKQLE+RLE+GI++IR++K+E+L +
Sbjct: 92  YYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLAS 151

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVT 96
           EI ++ KREIEL+N+++ LR+KIAE E  QQ   VT
Sbjct: 152 EINYMAKREIELQNDNMDLRTKIAEEE--QQLQQVT 185

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 96/138 (69%), Gaps = 5/138 (3%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           +YQQE++KLRQ+I  +Q +NR++MG+SL SLTV++LK LE +LE+GI+RIRSKK+E+L A
Sbjct: 105 FYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFA 164

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQ-ANMVTGQ---ELNAIHALASRNFFSPAI 116
           EIE++QK+EI+L N +  LR+KIAE ER QQ  N++ G    EL    +   RN+     
Sbjct: 165 EIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMPGSSDYELAPPQSFDGRNYIQLNG 224

Query: 117 IEGGGTAYSHPDKKILHL 134
           ++     YS  D+  L L
Sbjct: 225 LQ-PNNHYSRQDQTALQL 241

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Panax ginseng (taxid: 4054)

>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 89/135 (65%), Gaps = 10/135 (7%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQI  +QNSNR LMG+++ S++ KEL+ LE RLER ITRIRSKK+E+L +
Sbjct: 105 YYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFS 164

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQAN--MVTGQELNAI--------HALASRN 110
           EI+++QKRE++L N++  LR+KIAE ER   +   M  G     +            SRN
Sbjct: 165 EIDYMQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRN 224

Query: 111 FFSPAIIEGGGTAYS 125
           +F  A ++     YS
Sbjct: 225 YFQVAALQPNNHHYS 239

Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms an heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 85/101 (84%), Gaps = 4/101 (3%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQE++KLR+QI+ +QNSNRH++G+SL SL  KELK LE RLE+GI+R+RSKK+E+L+A
Sbjct: 104 YYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVA 163

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERF----QQANMVTG 97
           EIE++QKRE+EL++ ++ LR+KIAE  R     Q+++++ G
Sbjct: 164 EIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQG 204

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 88/135 (65%), Gaps = 10/135 (7%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQI  +QNSNR LMG+++ S++ KEL+ LE RL+R + RIRSKK+E+L A
Sbjct: 105 YYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFA 164

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQAN--MVTGQELNAI--------HALASRN 110
           EI+++QKRE++L N++  LR+KIAE ER   +   M  G     I            SRN
Sbjct: 165 EIDYMQKREVDLHNDNQLLRAKIAENERNNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRN 224

Query: 111 FFSPAIIEGGGTAYS 125
           +F  A ++     YS
Sbjct: 225 YFQVAALQPNNHHYS 239

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 94/125 (75%), Gaps = 7/125 (5%)

Query: 1   YYQQESAKLRQQIQMLQNSN-RHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLL 59
           +YQQES+KLRQQI  LQN+N R ++GDS++++++++LKQ+ENRLE+GI +IR++K+E+L 
Sbjct: 89  HYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLY 148

Query: 60  AEIEFLQKREIELENESVCLRSKIAEMERFQQA-NMVTGQELNAIHALA-----SRNFFS 113
           AE+E++QKRE+EL+N+++ LRSK+ E ER QQ  NM+     +    +      SRNF  
Sbjct: 149 AEVEYMQKREVELQNDNMYLRSKVVENERGQQPLNMMGAASTSEYDHMVNNPYDSRNFLQ 208

Query: 114 PAIIE 118
             I++
Sbjct: 209 VNIMQ 213

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 80/97 (82%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQE++KLR QI  LQN NR+ +G+SL++L +++L+ LE ++E+GI++IR+KK+E+L A
Sbjct: 105 YYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFA 164

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTG 97
           EIE++QKREI+L N +  LR+KIAE ER QQ N++ G
Sbjct: 165 EIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMPG 201

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Petunia hybrida (taxid: 4102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
23194453	223	MADS box protein GHMADS-2 [Gossypium hir	0.992	0.600	0.904	3e-62
27763670	227	mads-box transcription factor [Momordica	1.0	0.594	0.834	4e-61
307000606	227	mads-box transcription factor [Siraitia	1.0	0.594	0.834	6e-61
255539414	287	mads box protein, putative [Ricinus comm	0.992	0.466	0.889	9e-61
122938395	224	MADS-box protein MADS5 [Gossypium hirsut	1.0	0.602	0.860	2e-60
449517951	225	PREDICTED: agamous-like MADS-box protein	1.0	0.6	0.861	3e-60
449447607	224	PREDICTED: LOW QUALITY PROTEIN: agamous-	1.0	0.602	0.861	4e-60
224145114	223	predicted protein [Populus trichocarpa]	0.992	0.600	0.860	1e-59
225460269	223	PREDICTED: MADS-box protein 5 [Vitis vin	1.0	0.605	0.844	2e-59
296089427	233	unnamed protein product [Vitis vinifera]	1.0	0.579	0.844	2e-59

>gi|23194453|gb|AAN15183.1| MADS box protein GHMADS-2 [Gossypium hirsutum] gi|122938397|gb|ABM69044.1| MADS-box protein MADS6 [Gossypium hirsutum] gi|207298817|gb|ACI23560.1| agamous-like protein 1 [Gossypium barbadense]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 128/136 (94%), Gaps = 2/136 (1%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQ+ENRLERGITRIRSKKHEMLLA
Sbjct: 89  YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQVENRLERGITRIRSKKHEMLLA 148

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGG 120
           EIEFLQKREIELENESVCLR+KIAE+ER QQANMVTG ELNAI ALASRNFFSP +IE  
Sbjct: 149 EIEFLQKREIELENESVCLRTKIAEIERLQQANMVTGPELNAIQALASRNFFSPNVIE-H 207

Query: 121 GTAYSHP-DKKILHLG 135
            +AYSHP DKKILHLG
Sbjct: 208 PSAYSHPSDKKILHLG 223

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27763670|gb|AAO20104.1| mads-box transcription factor [Momordica charantia]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 116/139 (83%), Positives = 128/139 (92%), Gaps = 4/139 (2%)

Query: 1   YYQQESAKLRQQIQMLQNSN----RHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHE 56
           YYQQESAKLRQQIQMLQNSN    RHLMGDSLS+LTVKELKQLENRLERGITRIRSKKHE
Sbjct: 89  YYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHE 148

Query: 57  MLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAI 116
           MLLAEIE+LQKREIELENE+VC+R+KIAE+ER QQANMV+GQELNAI ALASRNFF+P +
Sbjct: 149 MLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFTPNM 208

Query: 117 IEGGGTAYSHPDKKILHLG 135
           +EGG   +SH DKK+LHLG
Sbjct: 209 MEGGAVTFSHQDKKMLHLG 227

Source: Momordica charantia

Species: Momordica charantia

Genus: Momordica

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307000606|gb|ADN22973.1| mads-box transcription factor [Siraitia grosvenorii]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 116/139 (83%), Positives = 128/139 (92%), Gaps = 4/139 (2%)

Query: 1   YYQQESAKLRQQIQMLQNSN----RHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHE 56
           YYQQESAKLRQQIQMLQNSN    RHLMGDSLS+LTVKELKQLENRLERGITRIRSKKHE
Sbjct: 89  YYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHE 148

Query: 57  MLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAI 116
           MLLAEIE+LQKREIELENE+VC+R+KIAE+ER QQANMV+GQELNAI ALASRNFF+P +
Sbjct: 149 MLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFNPNM 208

Query: 117 IEGGGTAYSHPDKKILHLG 135
           +EGG   +SH DKK+LHLG
Sbjct: 209 MEGGAVTFSHQDKKMLHLG 227

Source: Siraitia grosvenorii

Species: Siraitia grosvenorii

Genus: Siraitia

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539414|ref|XP_002510772.1| mads box protein, putative [Ricinus communis] gi|223551473|gb|EEF52959.1| mads box protein, putative [Ricinus communis]

 Score =  238 bits (606), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 121/136 (88%), Positives = 126/136 (92%), Gaps = 2/136 (1%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHE+LLA
Sbjct: 134 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHELLLA 193

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGG 120
           EIE+LQKREIELENESVCLR+KIAE+ER QQANMVTG ELNAI AL SRNFF   +IEGG
Sbjct: 194 EIEYLQKREIELENESVCLRTKIAEIERLQQANMVTGAELNAIQALTSRNFFGSHMIEGG 253

Query: 121 GTAYSHP-DKKILHLG 135
             AYSHP DKKILHLG
Sbjct: 254 A-AYSHPSDKKILHLG 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122938395|gb|ABM69043.1| MADS-box protein MADS5 [Gossypium hirsutum]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 126/136 (92%), Gaps = 1/136 (0%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNS+RHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA
Sbjct: 89  YYQQESAKLRQQIQMLQNSSRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 148

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIE-G 119
           EIE+ QKRE+ELENESVCLR+KIAE+ER ++ANMVTG ELNAI ALASRNFF+P +IE G
Sbjct: 149 EIEYFQKREVELENESVCLRAKIAEIERVEEANMVTGAELNAIQALASRNFFTPNVIERG 208

Query: 120 GGTAYSHPDKKILHLG 135
             T YSH DKKILHLG
Sbjct: 209 TPTPYSHHDKKILHLG 224

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517951|ref|XP_004166007.1| PREDICTED: agamous-like MADS-box protein AGL11-like isoform 2 [Cucumis sativus] gi|4103342|gb|AAD01742.1| agamous-like putative transcription factor [Cucumis sativus]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 128/137 (93%), Gaps = 2/137 (1%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNSNRHLMGDSLS+LTVKELKQLENRLERGITRIRSKKHEMLLA
Sbjct: 89  YYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLA 148

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALA-SRNFFSPAIIE- 118
           EIE+LQKREIELENE+VC+R+KIAE+ER QQANMV+GQELNAI ALA SRNFFSP I+E 
Sbjct: 149 EIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQALANSRNFFSPNIMEP 208

Query: 119 GGGTAYSHPDKKILHLG 135
            G  +YSH DKK+LHLG
Sbjct: 209 AGPVSYSHQDKKMLHLG 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447607|ref|XP_004141559.1| PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL11-like [Cucumis sativus]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 128/137 (93%), Gaps = 2/137 (1%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNSNRHLMGDSLS+LTVKELKQLENRLERGITRIRSKKHEMLLA
Sbjct: 88  YYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLA 147

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALA-SRNFFSPAIIE- 118
           EIE+LQKREIELENE+VC+R+KIAE+ER QQANMV+GQELNAI ALA SRNFFSP I+E 
Sbjct: 148 EIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQALANSRNFFSPNIMEP 207

Query: 119 GGGTAYSHPDKKILHLG 135
            G  +YSH DKK+LHLG
Sbjct: 208 AGPVSYSHQDKKMLHLG 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145114|ref|XP_002325531.1| predicted protein [Populus trichocarpa] gi|222862406|gb|EEE99912.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 128/136 (94%), Gaps = 2/136 (1%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNSNRHLMGD++S+L+VKELKQLENRLERGITRIRSKKHE+LLA
Sbjct: 89  YYQQESAKLRQQIQMLQNSNRHLMGDAVSNLSVKELKQLENRLERGITRIRSKKHELLLA 148

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHAL-ASRNFFSPAIIEG 119
           EIE+LQKREIELENESVCLR+KIAE+ER QQANMVTG ELNAI AL ASRNFF+P ++E 
Sbjct: 149 EIEYLQKREIELENESVCLRTKIAEVERLQQANMVTGAELNAIQALAASRNFFAPHLLE- 207

Query: 120 GGTAYSHPDKKILHLG 135
           GGTAY H DKKILHLG
Sbjct: 208 GGTAYPHNDKKILHLG 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460269|ref|XP_002281890.1| PREDICTED: MADS-box protein 5 [Vitis vinifera]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 122/135 (90%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNSNRHLMGDSL+SLTVKELKQLENRLERGITRIRSKKHE+LLA
Sbjct: 89  YYQQESAKLRQQIQMLQNSNRHLMGDSLASLTVKELKQLENRLERGITRIRSKKHELLLA 148

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGG 120
           EIE+LQKREIELENESV LR+KIAE+ER QQANMV+  E NAI AL SRNFF P +IEGG
Sbjct: 149 EIEYLQKREIELENESVYLRTKIAEVERLQQANMVSTHEFNAIQALVSRNFFQPNMIEGG 208

Query: 121 GTAYSHPDKKILHLG 135
            T Y  PDKK+LHLG
Sbjct: 209 STGYPLPDKKVLHLG 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089427|emb|CBI39246.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 122/135 (90%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
           YYQQESAKLRQQIQMLQNSNRHLMGDSL+SLTVKELKQLENRLERGITRIRSKKHE+LLA
Sbjct: 89  YYQQESAKLRQQIQMLQNSNRHLMGDSLASLTVKELKQLENRLERGITRIRSKKHELLLA 148

Query: 61  EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTGQELNAIHALASRNFFSPAIIEGG 120
           EIE+LQKREIELENESV LR+KIAE+ER QQANMV+  E NAI AL SRNFF P +IEGG
Sbjct: 149 EIEYLQKREIELENESVYLRTKIAEVERLQQANMVSTHEFNAIQALVSRNFFQPNMIEGG 208

Query: 121 GTAYSHPDKKILHLG 135
            T Y  PDKK+LHLG
Sbjct: 209 STGYPLPDKKVLHLG 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	1.0	0.527	0.697	1e-45
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.992	0.587	0.640	5.5e-38
UNIPROTKB|Q43616	225	fbp7 "Floral binding protein n	0.985	0.591	0.642	6.3e-37
UNIPROTKB|Q2QW53	270	MADS13 "MADS-box transcription	0.696	0.348	0.635	6.4e-28
UNIPROTKB|Q40885	242	AG1 "Floral homeotic protein A	0.718	0.400	0.556	1.4e-25
UNIPROTKB|Q9ZS29	246	GAGA2 "MADS-box protein, GAGA2	0.985	0.540	0.489	1.2e-24
UNIPROTKB|Q9ZS30	264	gaga1 "MADS-box protein, GAGA1	0.696	0.356	0.591	1.6e-24
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.644	0.353	0.379	1.3e-13
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.696	0.352	0.372	4.4e-13
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.585	0.317	0.437	9.1e-13

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 99/142 (69%), Positives = 121/142 (85%)

Query:     1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
             YYQQESAKLRQQIQ +QNSNR+LMGDSLSSL+VKELKQ+ENRLE+ I+RIRSKKHE+LL 
Sbjct:   115 YYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLV 174

Query:    61 EIEFLQKREIELENESVCLRSKIAEMERFQQAN--MVTGQELNAIHALASRNFFSPAII- 117
             EIE  QKREIEL+NE++ LR+K+AE+ER+QQ +  MV+G E+NAI ALASRN+F+ +I+ 
Sbjct:   175 EIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALASRNYFAHSIMT 234

Query:   118 ----EGGGTAYSHPDKKILHLG 135
                  G G +YS PDKKILHLG
Sbjct:   235 AGSGSGNGGSYSDPDKKILHLG 256

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 89/139 (64%), Positives = 106/139 (76%)

Query:     1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
             +YQQES KLRQQIQ+LQN+NRHL+G+ LS+L V+ELKQLENRLERGITRIRSKKHEM+LA
Sbjct:    89 FYQQESKKLRQQIQLLQNTNRHLVGEGLSALNVRELKQLENRLERGITRIRSKKHEMILA 148

Query:    61 EIEFLQKREIELENESVCLRSKIAEMERFQQANMV--TGQELNAIHALASRNFFSPAIIE 118
             E E LQKREI+LE E+  LRSKIAE ER Q+ +M+  TGQE NA     +RN     ++E
Sbjct:   149 ETENLQKREIQLEQENTFLRSKIAENERLQELSMMPATGQEYNAFQQYFARNMLQLNMME 208

Query:   119 GGGTAYSH-P--DKKILHL 134
             GG  +Y   P  DKK L L
Sbjct:   209 GGVPSYDPLPAHDKKSLQL 227

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q43616 fbp7 "Floral binding protein number 7" [Petunia x hybrida (taxid:4102)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 88/137 (64%), Positives = 104/137 (75%)

Query:     1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
             +YQQES KLRQQIQ++QNSNRHL+G+ LSSL V+ELKQLENRLERGI RIRSKKHEM+LA
Sbjct:    89 FYQQESKKLRQQIQLIQNSNRHLVGEGLSSLNVRELKQLENRLERGIARIRSKKHEMILA 148

Query:    61 EIEFLQKREIELENESVCLRSKIAEMERFQQANMVT--GQELNAIHALASRNFFSPAIIE 118
             E E LQKREI+LE E+  LRSKIAE ER Q+ +M+   GQE NAI    +RN     ++E
Sbjct:   149 ESEDLQKREIQLEQENAFLRSKIAENERLQELSMMPAGGQEYNAIQQYLARNMLQLNMME 208

Query:   119 GGGTAYSHP-DKKILHL 134
             G   +Y  P DKK L L
Sbjct:   209 GV-PSYPLPSDKKSLDL 224

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2QW53 MADS13 "MADS-box transcription factor 13" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 61/96 (63%), Positives = 85/96 (88%)

Query:     1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
             YYQQESAKLR QIQMLQN+N+HL+GD++S+L++KELKQLE+RLE+GI++IR++K+E+L +
Sbjct:    92 YYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLAS 151

Query:    61 EIEFLQKREIELENESVCLRSKIAEMERFQQANMVT 96
             EI ++ KREIEL+N+++ LR+KIAE E  QQ   VT
Sbjct:   152 EINYMAKREIELQNDNMDLRTKIAEEE--QQLQQVT 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048283 "indeterminate inflorescence morphogenesis" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

UNIPROTKB|Q40885 AG1 "Floral homeotic protein AGAMOUS" [Petunia x hybrida (taxid:4102)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 54/97 (55%), Positives = 80/97 (82%)

Query:     1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
             YYQQE++KLR QI  LQN NR+ +G+SL++L +++L+ LE ++E+GI++IR+KK+E+L A
Sbjct:   105 YYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFA 164

Query:    61 EIEFLQKREIELENESVCLRSKIAEMERFQQANMVTG 97
             EIE++QKREI+L N +  LR+KIAE ER QQ N++ G
Sbjct:   165 EIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMPG 201

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS29 GAGA2 "MADS-box protein, GAGA2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 70/143 (48%), Positives = 94/143 (65%)

Query:     1 YYQQESAKLRQQIQMLQNSNR----HLMGDSLSSLTVKELKQLENRLERGITRIRSKKHE 56
             +YQQE+AKLRQQI  LQN NR    ++MG+SL ++  K+LK LE++LE+GI +IRSKK+E
Sbjct:   104 FYQQEAAKLRQQIANLQNQNRQFYRNIMGESLGNMPAKDLKNLESKLEKGIGKIRSKKNE 163

Query:    57 MLLAEIEFLQKREIELENESVCLRSKIAEMERFQQ-ANMVTGQ---ELNAIHA-LASRNF 111
             +L AEIE++QKRE EL N +  LRSKIAE ER QQ  +++ G    EL A H     RN+
Sbjct:   164 ILFAEIEYMQKRENELHNSNQFLRSKIAENERAQQHMSLMPGSSDYELVAPHQPFDGRNY 223

Query:   112 FSPAIIEGGGTAYSHPDKKILHL 134
                  ++     YS  D+  L L
Sbjct:   224 LQVNDLQPNNN-YSCQDQTPLQL 245

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS30 gaga1 "MADS-box protein, GAGA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 58/98 (59%), Positives = 76/98 (77%)

Query:     1 YYQQESAKLRQQIQMLQNSNR----HLMGDSLSSLTVKELKQLENRLERGITRIRSKKHE 56
             YYQQE+AKLRQQI  LQN NR    ++MG+SL  + VK+LK LE +LE+ I+RIR+KK+E
Sbjct:   121 YYQQEAAKLRQQIANLQNQNRQFYRNIMGESLGDMPVKDLKNLEGKLEKAISRIRAKKNE 180

Query:    57 MLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANM 94
             +L AEIE++QKRE+EL N +  LR+KI E ER QQ +M
Sbjct:   181 LLFAEIEYMQKRELELHNSNQFLRAKIVENERAQQHHM 218

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/87 (37%), Positives = 58/87 (66%)

Query:     5 ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEF 64
             E  KL+ +++ +Q   +HLMG+ L SL +KEL+QLE +LE  +  IRS+K +++L  I  
Sbjct:    94 EYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINE 153

Query:    65 LQKREIELENESVCLRSKIAEMERFQQ 91
             LQ++E  L+ E+  L+ ++ E ++ Q+
Sbjct:   154 LQRKEKSLQEENKVLQKELVEKQKVQK 180

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 35/94 (37%), Positives = 58/94 (61%)

Query:     5 ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEF 64
             E  KL+ +I+ +Q  ++HLMG+ L SL +KEL+QLE +LE  +  I S+K  ++L  I  
Sbjct:    94 EYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISE 153

Query:    65 LQKREIELENESVCLRSKIAEMERFQQANMVTGQ 98
             LQK+E  L+ E+  L+ ++ E ++  +     GQ
Sbjct:   154 LQKKERSLQEENKALQKELVERQKNVRGQQQVGQ 187

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 35/80 (43%), Positives = 56/80 (70%)

Query:     9 LRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKR 68
             L+ ++  LQ S R L+G+ L +LT+KEL+QLE++LE  +  IRSKK+++L   I  LQK+
Sbjct:    98 LKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKK 157

Query:    69 EIELENESVCLRSKIAEMER 88
             E  L+N++  L+ K+ E E+
Sbjct:   158 EKSLKNQNNVLQ-KLMETEK 176

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam01486	100	pfam01486, K-box, K-box region	1e-29

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  102 bits (257), Expect = 1e-29
 Identities = 45/85 (52%), Positives = 64/85 (75%)

Query: 1   YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60
             QQE+AKL++Q + LQ   RHL+G+ L SL++KEL+QLE +LE G+  IRS+K+E+LL 
Sbjct: 16  NLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLN 75

Query: 61  EIEFLQKREIELENESVCLRSKIAE 85
           +IE LQK+E EL+ E+  LR K+ E
Sbjct: 76  QIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.9
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.63
KOG0014	195	consensus MADS box transcription factor [Transcrip	95.42
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	92.21
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.64
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.16
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.64
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	84.88
PRK13169	110	DNA replication intiation control protein YabA; Re	84.71
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	84.2
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	84.2
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	83.11
COG2433	652	Uncharacterized conserved protein [Function unknow	82.14
KOG4797	123	consensus Transcriptional regulator [Transcription	81.44
PF13758	99	Prefoldin_3: Prefoldin subunit	81.1

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.90  E-value=2.2e-23  Score=143.90  Aligned_cols=85  Identities=52%  Similarity=0.723  Sum_probs=82.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191            1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLR   80 (135)
Q Consensus         1 ~w~~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~   80 (135)
                      .|..++++|+.+++.|+..+|+++|+||++||++||.+||++|+.|+.+||+||+++|+++|+.+++|++.+.++|..|+
T Consensus        16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~   95 (100)
T PF01486_consen   16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR   95 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 045191           81 SKIAE   85 (135)
Q Consensus        81 ~~~~~   85 (135)
                      .++++
T Consensus        96 ~~~~e  100 (100)
T PF01486_consen   96 QKIEE  100 (100)
T ss_pred             HHhcC
Confidence            98853

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.63  E-value=0.24  Score=32.25  Aligned_cols=50  Identities=26%  Similarity=0.435  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAE   85 (135)
Q Consensus        31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~   85 (135)
                      ||++-|.+||..+..++..|.     ++..+++.|+.+...+.++|..|..+...
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~   50 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQ   50 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            688999999999999999985     46666777877766666666666655543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=95.42  E-value=0.0031  Score=47.24  Aligned_cols=70  Identities=30%  Similarity=0.372  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHHHHHHH---HHhhhhcCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 045191            2 YQQESAKLRQQIQMLQ---NSNRHLMGDSLSSLTV-KELKQLENRLERGITRIRSKKHEMLLAEIE-FLQKREIE   71 (135)
Q Consensus         2 w~~e~~~L~~~~~~L~---~~~R~l~GedL~~Ls~-~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~-~l~kk~~~   71 (135)
                      |......+....+.+.   ...++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.+...
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (195)
T KOG0014|consen  112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKS  186 (195)
T ss_pred             hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchh
Confidence            3445556666666665   4499999999999999 999999999999999999999999888775 44444333

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=92.21  E-value=1.6  Score=30.39  Aligned_cols=51  Identities=25%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191           33 VKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER   88 (135)
Q Consensus        33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~   88 (135)
                      ++.+.+||++|..-+..|..-|.+     +..+-..-..|.-||..|+..+.+...
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456778888887777766654433     344445555566677777777765543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.64  E-value=3.3  Score=26.97  Aligned_cols=53  Identities=25%  Similarity=0.424  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191           31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER   88 (135)
Q Consensus        31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~   88 (135)
                      ||++=+..||..+..|+.-|     .++.-+|+.|+.|...|..+-..++...++..+
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~~   53 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALER   53 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence            68888999999999999887     678888999988887777666665555544433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.16  E-value=4.8  Score=26.67  Aligned_cols=43  Identities=26%  Similarity=0.443  Sum_probs=34.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVC   78 (135)
Q Consensus        31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~   78 (135)
                      ||++=|.+||..+..|+.-|     .++..+|+.|+.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999988     56777888888887776666554

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.64  E-value=18  Score=29.74  Aligned_cols=81  Identities=28%  Similarity=0.394  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191            8 KLRQQIQMLQNSNRHLMG--DSLSSLTVKELKQLENRLERGITRIRSKKHEM--LLAEIEFLQKREIELENESVCLRSKI   83 (135)
Q Consensus         8 ~L~~~~~~L~~~~R~l~G--edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~l--l~~qi~~l~kk~~~l~een~~L~~~~   83 (135)
                      .++...+.|+.+.+++.-  ++++.++..+|..+-..|..-...|..++.++  +..+...+..++....+....+...|
T Consensus       176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666553  67889999999999999999888888777664  46677777777777777777888888


Q ss_pred             HHHhH
Q 045191           84 AEMER   88 (135)
Q Consensus        84 ~~~~~   88 (135)
                      .+.+.
T Consensus       256 ~~ae~  260 (312)
T smart00787      256 AEAEK  260 (312)
T ss_pred             HHHHH
Confidence            77766

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=84.88  E-value=1.7  Score=27.22  Aligned_cols=17  Identities=47%  Similarity=0.788  Sum_probs=15.3

Q ss_pred             hhcCCCCCCCCHHHHHH
Q 045191           22 HLMGDSLSSLTVKELKQ   38 (135)
Q Consensus        22 ~l~GedL~~Ls~~EL~~   38 (135)
                      +..|+||+.||+.||..
T Consensus        12 ~~ig~dLs~lSv~EL~~   28 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEE   28 (59)
T ss_pred             cccCCCchhcCHHHHHH
Confidence            67899999999999975

The function of this family is unknown.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=84.71  E-value=10  Score=26.61  Aligned_cols=49  Identities=22%  Similarity=0.309  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           33 VKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEM   86 (135)
Q Consensus        33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~   86 (135)
                      ++-+.+||+++..-+..|..-|.+     +..+-.....|.-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999998888777665544     3455556666777888888888764

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=84.20  E-value=21  Score=29.12  Aligned_cols=80  Identities=30%  Similarity=0.394  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           10 RQQIQMLQNSNRHLMG--DSLSSLTVKELKQLENRLERGITRIRSKKHEM--LLAEIEFLQKREIELENESVCLRSKIAE   85 (135)
Q Consensus        10 ~~~~~~L~~~~R~l~G--edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~l--l~~qi~~l~kk~~~l~een~~L~~~~~~   85 (135)
                      ......|..+++.+..  .+++.++..+|..+-..|...-..|..+|..+  +..+...++.++..+.++...+...|.+
T Consensus       183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e  262 (325)
T PF08317_consen  183 RERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE  262 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445555444432  45889999999999999999888888877764  4677778888888888888888888877


Q ss_pred             HhHh
Q 045191           86 MERF   89 (135)
Q Consensus        86 ~~~~   89 (135)
                      .+..
T Consensus       263 ~~~~  266 (325)
T PF08317_consen  263 AEKI  266 (325)
T ss_pred             HHHH
Confidence            6653

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=84.20  E-value=3.1  Score=26.02  Aligned_cols=27  Identities=33%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           56 EMLLAEIEFLQKREIELENESVCLRSK   82 (135)
Q Consensus        56 ~ll~~qi~~l~kk~~~l~een~~L~~~   82 (135)
                      +.+.++|.+|..+...|+.+|..|+..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466777777777777777777777643

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=83.11  E-value=2.4  Score=29.71  Aligned_cols=26  Identities=35%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           60 AEIEFLQKREIELENESVCLRSKIAE   85 (135)
Q Consensus        60 ~qi~~l~kk~~~l~een~~L~~~~~~   85 (135)
                      ..+..+++|...|+|||+.|+.+++-
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999999854

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.14  E-value=34  Score=30.87  Aligned_cols=73  Identities=26%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191            6 SAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRS-----KKHEMLLAEIEFLQKREIELENESVCLR   80 (135)
Q Consensus         6 ~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~-----rK~~ll~~qi~~l~kk~~~l~een~~L~   80 (135)
                      +++|..++..|+..+-.+-         +++..||..|+..-.+++.     |+.+.+...|..|+++..+-...-..|.
T Consensus       431 ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~  501 (652)
T COG2433         431 VERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE  501 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554444         7888999999888777763     4566778888888888766666666666


Q ss_pred             HHHHHHh
Q 045191           81 SKIAEME   87 (135)
Q Consensus        81 ~~~~~~~   87 (135)
                      .++....
T Consensus       502 ~~l~~l~  508 (652)
T COG2433         502 RKLAELR  508 (652)
T ss_pred             HHHHHHH
Confidence            6665544

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=81.44  E-value=9  Score=27.04  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           38 QLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI   83 (135)
Q Consensus        38 ~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~   83 (135)
                      .+.+.+|.|+.-|.+.-+=-..++++.|+.+++.|.+.|..|..+-
T Consensus        45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN   90 (123)
T KOG4797|consen   45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN   90 (123)
T ss_pred             eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888877554333336777777777777777777766543

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=81.10  E-value=4.6  Score=27.92  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=14.5

Q ss_pred             CcHHHHHHHHHHHHHH
Q 045191            1 YYQQESAKLRQQIQML   16 (135)
Q Consensus         1 ~w~~e~~~L~~~~~~L   16 (135)
                      .|.+||+.|++++..|
T Consensus         9 ~w~aEYe~LKEEi~~l   24 (99)
T PF13758_consen    9 TWEAEYEGLKEEIEAL   24 (99)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            3999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.27
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	87.17
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	84.31
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	83.5
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	82.58
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	81.55
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	80.88

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.27  E-value=1.5  Score=28.32  Aligned_cols=46  Identities=24%  Similarity=0.415  Sum_probs=36.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRS   81 (135)
Q Consensus        31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~   81 (135)
                      +|++=|.+||..+..++..|     .++..+|+.|+.|...|..++..++.
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999987     56777788888887776666655433

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=87.17  E-value=3.1  Score=25.26  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191           46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME   87 (135)
Q Consensus        46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~   87 (135)
                      |..+.|.||.+.+    ..|..++..|..+|..|..++....
T Consensus        20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888887665    8889999999999999998886654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=84.31  E-value=4.9  Score=24.17  Aligned_cols=39  Identities=26%  Similarity=0.469  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191           46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER   88 (135)
Q Consensus        46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~   88 (135)
                      |..+-|.||.+.+    ..|..++..|..+|..|..++.....
T Consensus        13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~   51 (63)
T 2wt7_A           13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLK   51 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566688887765    88889999999999999998876544

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=83.50  E-value=5  Score=23.63  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191           46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME   87 (135)
Q Consensus        46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~   87 (135)
                      |-.+-|.||-..    ++.|..++..|..+|..|..++....
T Consensus        12 sA~rSR~RKk~~----~~~LE~~v~~L~~eN~~L~~~~~~L~   49 (55)
T 1dh3_A           12 AARESRRKKKEY----VKSLENRVAVLENQNKTLIEELKALK   49 (55)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344557777644    48889999999999999999886654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=82.58  E-value=5.7  Score=23.61  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191           46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER   88 (135)
Q Consensus        46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~   88 (135)
                      |..+-|.||-+.+    +.|..++..|..+|..|..++.....
T Consensus        12 AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D           12 AASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567788887655    78888899999999999888876554

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=81.55  E-value=6.4  Score=23.50  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191           46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER   88 (135)
Q Consensus        46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~   88 (135)
                      |..+-|.||.+.+    ..|..++..|..+|..|..++.....
T Consensus        12 AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~   50 (62)
T 1jnm_A           12 AASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667788887665    88999999999999999999876654

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=80.88  E-value=2.9  Score=26.50  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191           56 EMLLAEIEFLQKREIELENESVCLRS   81 (135)
Q Consensus        56 ~ll~~qi~~l~kk~~~l~een~~L~~   81 (135)
                      +++.++|.+|..|...|+.||..|+.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00