Citrus Sinensis ID: 045218

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MDSTPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRYLPKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTDKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSILNQMRLEEDSLKALPEGNEVDICSTTHDSDISPVVEATSDVNGNST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEccHHHccccccHHHHHcccccHHHHHcccccHHHHHHHccccccEEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccHHHHccccccccccccccccccHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHcccccccccccccccccHHHcccccccccEEEEEEEcHHHHccccHHHHHHHHccccHHHHHHHccHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHccccHHcccccccEEEcccccccccccccccccccHHHHHHHHHccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccEccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mdstpnssscwsnivktqppqsaatqtktvpAAEILAQSCNSTEGIAVAVVDANAIIqgahnltnfadkfvtvpevlaeirdpvsrnrlnfipfsidsmepspdsLNKVIKFARatgdlqtlsDVDLKLIALTCTLEtqmhgtkhlrdappplhtvnvkrlpekdlpgwgsnvanleewealdndnadklntnsrilplrdlnlnviagdyhsengsvesqgggnsenqedgehglrrprrylpkkiEVNIEGKKMVAAGidasqgqveddaadwmpavsrsthrRYVRRKARREYYDsltdkdsqqekemgddsnnvdesgnleqqlhlgseeardtngtseeseitekSGSEELSSILNQMRLEEdslkalpegnevdicstthdsdispvveatsdvngnst
Flexible Loop (DISEMBL)
mdstpnssscwsnivktqppqsAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLaeirdpvsrnRLNFIpfsidsmepspDSLNKVIKFARAtgdlqtlsdVDLKLIALTCTLETQMhgtkhlrdappplhTVNVKRLPEKDLPGWGSNVANLEEWEALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSEngsvesqgggnsenqedgehglrrprrylpKKIEVNIEGKKMVAAGIDAsqgqveddaadwmpavsrsthrryvrrkarreyydsltdkdsqqekemgddsnnvdESGNLEQQlhlgseeardtngtseeseiteksgseELSSILNQMRLEEDSLKALPEGNEVDICstthdsdispvveatsdvngnst
Low Complexity Region (SEG)
MDSTPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGiavavvdanaiiQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRYLPKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHrryvrrkarreyyDSLTDKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSILNQMRLEEDSLKALPEGNEVDICSTTHDSDISPVVEATSDVNGNST
Disordered region (IsUnstruct)
********************************AEILAQSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSI*********LNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTK**********TVNV******DLPGWGSNVANLEEWEALDND**DKLNTNSRILPLRDLNLNVIAGDY**************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
************************************************AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP****************************************************************************************************************************WMPAVSR****************************************************************************************************************************
Disordered Region (DISEMBL)
***********SNIVK************TVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSEN********************LRRPRRYLPKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYY*********************DESGNLEQQLHLGS**********************ELSSILNQMRLEEDSLKALPEGNEVDICSTTHDSDISPVVEA*********
Disordered Region (DISPRO)
******************************************TEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDNDN********RILP************************************************IEVNIEGKKMVAAGIDASQGQV*DDAADWMPAVSRSTHRRYVRRKARREYYDSLTD**************************************************************LEEDSLKALP**NEVDICSTTHDSDISP*VEA*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSTPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRYLPKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTDKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSILNQMRLEEDSLKALPEGNEVDICSTTHDSDISPVVEATSDVNGNST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q9UTK0	388	20S-pre-rRNA D-site endon	yes	no	0.269	0.280	0.344	1e-12
Q9ULX3	412	RNA-binding protein NOB1	yes	no	0.249	0.245	0.362	2e-12
Q5RBB3	411	RNA-binding protein NOB1	yes	no	0.249	0.245	0.362	3e-12
Q8BW10	403	RNA-binding protein NOB1	yes	no	0.249	0.250	0.362	3e-12
Q6VEU1	410	RNA-binding protein NOB1	yes	no	0.249	0.246	0.362	4e-12
Q4R537	412	RNA-binding protein NOB1	N/A	no	0.249	0.245	0.362	4e-12
Q3T042	413	RNA-binding protein NOB1	yes	no	0.249	0.244	0.352	1e-11
Q08444	459	20S-pre-rRNA D-site endon	yes	no	0.271	0.239	0.350	2e-09
O29862	166	Putative ribonuclease Vap	yes	no	0.197	0.481	0.406	8e-07

>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 43  TEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPS 102
           ++ I   V+D   II  +  L N A+ F T+P V+AEIRD  SR         +    P 
Sbjct: 2   SKSITHLVLDTGGIICSSTLLRNSAESFYTIPRVIAEIRDETSRKNFELWGDQVIQRVPK 61

Query: 103 PDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMH----------GTKHLRDAPP 151
           P+ + KV +FA+ TGD  +LS  D++++ALT  LE + +          G KH+   PP
Sbjct: 62  PEFIKKVSEFAKQTGDYSSLSVTDIQILALTYELEVEFNGGDWRLRKYPGQKHINGKPP 120

Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 49  AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
            V DA A ++ A  L +      T+ EV+ EIRD  +R RL  +P+ +   EP P+ +  
Sbjct: 7   VVADAGAFLRHA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRL 65

Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
           V +F++ TGD  +LS  D++++ALT  LE +  G  HL+  P
Sbjct: 66  VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107

May play a role in mRNA degradation.

Homo sapiens (taxid: 9606)

>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 49  AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
            V DA A ++ A  L +      T+ EV+ EIRD  +R RL  +P+ +   EP P+ +  
Sbjct: 7   VVADAGAFLRDA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRL 65

Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
           V +F++ TGD  +LS  D++++ALT  LE +  G  HL+  P
Sbjct: 66  VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107

May play a role in mRNA degradation.

Pongo abelii (taxid: 9601)

>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 49  AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
            V DA A ++ A  L +      T+ EV+ EIRD  +R RL  +P+ +   EP P+ +  
Sbjct: 7   VVADAGAFLRDA-PLQDIGKNIYTIREVVREIRDKATRRRLAVLPYQLRFKEPLPEYVRL 65

Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
           V +F++ TGD  +LS  D++++ALT  LE +  G  HL+  P
Sbjct: 66  VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKKEP 107

May play a role in mRNA degradation.

Mus musculus (taxid: 10090)

>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 49  AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
            V DA A ++ A  L +      T+ EV+ EIRD  +R RL  +P+ +   EP P+ +  
Sbjct: 7   VVADAGAFLRDA-PLQDIGKNIYTIREVVREIRDKATRRRLAVLPYELRFKEPFPEYVRL 65

Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
           V +F++ TGD  +LS  D++++ALT  LE +  G  HL+  P
Sbjct: 66  VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKKEP 107

May play a role in mRNA degradation.

Rattus norvegicus (taxid: 10116)

>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 49  AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
            V DA A ++ A  L +      T+ EV+ EIRD  +R RL  +P+ +   EP P  +  
Sbjct: 7   VVADAGAFLRDA-ALQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPQYVRL 65

Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
           V +F++ TGD  +LS  D++++ALT  LE +  G  HL+  P
Sbjct: 66  VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107

May play a role in mRNA degradation.

Macaca fascicularis (taxid: 9541)

>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 49  AVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNK 108
            V DA A +  A  L +      T+  V++EIRD  +R RL  +P+ +   EP P+ +  
Sbjct: 7   VVADAGAFLLDA-ALQDIGKNIYTIRNVISEIRDKATRRRLAVLPYELRFKEPFPEYVRL 65

Query: 109 VIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAP 150
           V +F++ TGD  +LS  D++++ALT  LE +  G  HL+  P
Sbjct: 66  VTEFSKKTGDYPSLSATDIQVLALTYQLEAEFVGVSHLKQEP 107

May play a role in mRNA degradation.

Bos taurus (taxid: 9913)

>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 41  NSTEGIAVAVVDANAII-QGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPF--SID 97
           N T  +   ++DA  +I Q   +  N+A  F T P V  EI+D  +R  L       ++ 
Sbjct: 4   NQTAHVRALILDATPLITQSYTHYQNYAQSFYTTPTVFQEIKDAQARKNLEIWQSLGTLK 63

Query: 98  SMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQM-HGTKHLRDAP 150
            + PS +S+ KV  FA+ TGD   LS  DL ++ALT  LE ++ +G   LR  P
Sbjct: 64  LVHPSENSIAKVSTFAKLTGDYSVLSANDLHILALTYELEIKLNNGDWRLRKKP 117

Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. In association with NIN1, may promote the recruitment of the proteasome to the ribosomal subunits stalled in maturation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|O29862|VAPC8_ARCFU Putative ribonuclease VapC8 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=vapC8 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%)

Query: 46  IAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDS 105
           + V V+D++AI Q      N     VTVPEV+AEI D  S    +   F ++  E SP+S
Sbjct: 4   VEVHVIDSSAIFQRKAVYRNM----VTVPEVVAEILDEASALYFSVKNFRVE--EASPES 57

Query: 106 LNKVIKFARATGDLQTLSDVDLKLIA 131
           + +V + AR TGD+  LSD D+K++A
Sbjct: 58  VEEVKEAARKTGDIHKLSDTDIKVLA 83

Toxic component of a toxin-antitoxin (TA) module. A putative RNase.

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
255537423	628	RNA-binding protein nob1, putative [Rici	0.950	0.613	0.611	1e-120
359474015	633	PREDICTED: RNA-binding protein NOB1-like	0.995	0.636	0.581	1e-120
224071796	588	predicted protein [Populus trichocarpa]	0.824	0.568	0.652	1e-116
297801448	599	hypothetical protein ARALYDRAFT_493857 [	0.859	0.580	0.574	1e-112
147800398	621	hypothetical protein VITISV_020978 [Viti	0.965	0.629	0.556	1e-111
449452344	617	PREDICTED: RNA-binding protein NOB1-like	0.898	0.589	0.627	1e-110
449495836	617	PREDICTED: LOW QUALITY PROTEIN: RNA-bind	0.898	0.589	0.627	1e-110
15237579	602	RNA-binding protein NOB1 [Arabidopsis th	0.846	0.569	0.575	1e-110
51969178	602	unknown protein [Arabidopsis thaliana]	0.846	0.569	0.575	1e-110
356513405	632	PREDICTED: uncharacterized protein LOC10	0.977	0.626	0.538	1e-108

>gi|255537423|ref|XP_002509778.1| RNA-binding protein nob1, putative [Ricinus communis] gi|223549677|gb|EEF51165.1| RNA-binding protein nob1, putative [Ricinus communis]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/391 (61%), Positives = 294/391 (75%), Gaps = 6/391 (1%)

Query: 13  NIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVT 72
           NIVK  P Q         P  +I  +SC S++GI++AV+DANA+I+G   L N ADKFVT
Sbjct: 18  NIVKNPPQQPNNQNPSPNPTNQIFVESCKSSKGISMAVIDANAVIEGGEKLHNLADKFVT 77

Query: 73  VPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIAL 132
           VPEVLAEIRDPVSR+RL+F+PF+IDS+EPS D+LNKVIKFARATGDLQTLSDVDLKL+AL
Sbjct: 78  VPEVLAEIRDPVSRHRLSFVPFTIDSLEPSTDALNKVIKFARATGDLQTLSDVDLKLLAL 137

Query: 133 TCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDNDNADKLNT 192
           T TLE Q+HGTKH+RDAPPP+HTVNVKRLPEKD+PGWGSNV NLEEWEAL+ +  D LN 
Sbjct: 138 TYTLEAQIHGTKHIRDAPPPIHTVNVKRLPEKDMPGWGSNVPNLEEWEALEQEAGDGLNA 197

Query: 193 NSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRYLPKKIEVNIE 252
            SRILPL++++LN I  D  SE+ +V +    +SEN ED +HGLR+ RRY PKK E++IE
Sbjct: 198 GSRILPLKEMSLNTITVDDQSEDCAVVTGSEEHSENHEDVDHGLRKHRRYPPKKKEISIE 257

Query: 253 GKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTDKDSQQEKEMG 312
           GKKMVA GIDASQGQ +DDA DWMPAVSRSTHRR++RRKARREY ++L +KDS++  E  
Sbjct: 258 GKKMVADGIDASQGQFDDDAGDWMPAVSRSTHRRFLRRKARREYNEALIEKDSRENME-- 315

Query: 313 DDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSILNQMRLEEDSLKA 372
             SN++ E    +  LH  SE     NG  EESE+  K+  E+LSSIL +MRLEE+S KA
Sbjct: 316 --SNDIKEITIPDPSLHQSSESVNAGNGIYEESEM--KNNDEDLSSILTKMRLEEESAKA 371

Query: 373 LPEGNEVDICSTTHDSDISPVVEATSDVNGN 403
           L EG E +  S       +  +EA++D N N
Sbjct: 372 LQEGKEENSTSVGLKFTDNMHLEASADSNAN 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474015|ref|XP_002269627.2| PREDICTED: RNA-binding protein NOB1-like [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/404 (58%), Positives = 287/404 (71%), Gaps = 1/404 (0%)

Query: 1   MDSTPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGA 60
           M+  P+ + CWSNIVK QPP       + +    +   SC S++GI++AVVDA AIIQG 
Sbjct: 1   MEEPPSQAPCWSNIVKAQPPPKPHHHQQALIPPNLPVGSCKSSKGISIAVVDATAIIQGG 60

Query: 61  HNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQ 120
             LT  ADKFV+V EV+ E+RDPVSR++L F+PF+ID+MEPSP+SL KVI FARATGDLQ
Sbjct: 61  EQLTRCADKFVSVSEVIDEVRDPVSRHKLAFVPFTIDTMEPSPESLKKVINFARATGDLQ 120

Query: 121 TLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWE 180
           TLSDVDLKLIALT  LE Q+HGTKHLRD+PPP+H VNVKRLPEKD+PGWGSNV NLEEWE
Sbjct: 121 TLSDVDLKLIALTYMLEAQIHGTKHLRDSPPPIHAVNVKRLPEKDMPGWGSNVPNLEEWE 180

Query: 181 ALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPR 240
           AL+++  D  N NSRILPL DLNLNVI  D HSENG   + G   SE+QED +   RRP 
Sbjct: 181 ALEHEVEDGSNPNSRILPLTDLNLNVIPADDHSENGLTGNGGEARSEDQEDTDPTSRRPM 240

Query: 241 RYLPKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSL 300
           RYLPKK E+ IEGKKMVA G+DASQGQ  D+A DW+PAVSRSTHRRY+RRKAR E +++ 
Sbjct: 241 RYLPKKKEIKIEGKKMVADGVDASQGQYGDNAGDWLPAVSRSTHRRYLRRKARHELHEAS 300

Query: 301 TDKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEIT-EKSGSEELSSI 359
                Q + E   ++N ++++   ++ +H   E     NG +EES  T  K G   LSSI
Sbjct: 301 LGNGHQHDAEENMENNIIEDTECADELMHESPEGKLVGNGITEESGTTGGKEGDGNLSSI 360

Query: 360 LNQMRLEEDSLKALPEGNEVDICSTTHDSDISPVVEATSDVNGN 403
           L QMRLEE SLK L EG E D      +S+   V E+TSD N +
Sbjct: 361 LQQMRLEEGSLKDLQEGKEGDFLCGGSESNNCTVAESTSDNNAH 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071796|ref|XP_002303575.1| predicted protein [Populus trichocarpa] gi|222841007|gb|EEE78554.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/337 (65%), Positives = 265/337 (78%), Gaps = 3/337 (0%)

Query: 5   PNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLT 64
           P+++ CWSNIVK   P      ++     ++  +SC ST GI+VAV+DANAIIQG   L 
Sbjct: 9   PSTTQCWSNIVKNHQPSPPPAPSQQQ-QDQLYVESCKSTHGISVAVIDANAIIQGGEKLN 67

Query: 65  NFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSD 124
           NFADKF TVPEVLAEIRDPVSR+RL FIPFSID  EPSPDSLNKVIKFARATGDLQTLSD
Sbjct: 68  NFADKFFTVPEVLAEIRDPVSRHRLAFIPFSIDCREPSPDSLNKVIKFARATGDLQTLSD 127

Query: 125 VDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDN 184
           VDLKLIALT TLETQ+HGTKH+RDAPPP+HTVNVKRLPEKD+PGWGSNV NLEEWEAL+ 
Sbjct: 128 VDLKLIALTYTLETQLHGTKHIRDAPPPVHTVNVKRLPEKDMPGWGSNVPNLEEWEALEQ 187

Query: 185 DNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRYLP 244
           +  D ++ +S+ILPL+D++LNV+  D  SE+GS    G  NSEN ED EHG R+PRR+ P
Sbjct: 188 ETGDGIDPSSKILPLKDISLNVMPADDQSEDGSTGIGGEANSENFEDVEHGSRKPRRFPP 247

Query: 245 KKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTDKD 304
           KK ++N+EGKKMVA GIDASQGQ +D+A DWMPAVSRSTHRRY+RRK RRE+ ++L +KD
Sbjct: 248 KKKDINLEGKKMVAGGIDASQGQFDDNAGDWMPAVSRSTHRRYLRRKGRREFNEALLEKD 307

Query: 305 SQQEKEMGDDSNNVDESGNLEQQLH--LGSEEARDTN 339
           SQQ+ E   D + ++ +   +Q LH  L SEE  + N
Sbjct: 308 SQQDLEKSMDDSTIEVASVPDQVLHQSLISEEKTEIN 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801448|ref|XP_002868608.1| hypothetical protein ARALYDRAFT_493857 [Arabidopsis lyrata subsp. lyrata] gi|297314444|gb|EFH44867.1| hypothetical protein ARALYDRAFT_493857 [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/378 (57%), Positives = 275/378 (72%), Gaps = 30/378 (7%)

Query: 5   PNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLT 64
           P  +S WS+IVK  PP           A   +  +C ST+GI++AVVDANA+I+G  +LT
Sbjct: 3   PKPTSMWSSIVKKDPPSKPPVNDGAPAAILGMVGNCKSTKGISMAVVDANAVIEGGQSLT 62

Query: 65  NFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSD 124
           NFAD+FVTVPEVL+EIRDP SR RL+FIPF+ID+MEPSP+SL+KVIKFARATGDLQTLSD
Sbjct: 63  NFADRFVTVPEVLSEIRDPASRRRLSFIPFTIDTMEPSPESLSKVIKFARATGDLQTLSD 122

Query: 125 VDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDN 184
           VDLKLIAL+ TLE Q+HGTK+LRD PPP+ TV VKRLPEKDLPGWGSNV+NL+EWEAL+N
Sbjct: 123 VDLKLIALSYTLEAQVHGTKNLRDVPPPIQTVRVKRLPEKDLPGWGSNVSNLDEWEALEN 182

Query: 185 DNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQE-DGEHGLRRPRRYL 243
           +  ++ N NS+ILPL+DLN+N+IA D  SE GSV S    ++EN E D + G ++ RRY 
Sbjct: 183 ETEEQSNANSKILPLKDLNMNIIASDNVSEIGSVVS----HTENHEVDEQEGEKKHRRYP 238

Query: 244 PKKIEVNIEGKKMVAAGIDASQGQV---EDDAADWMPAVSRSTHRRYVRRKARREYYDSL 300
           PKK E+ +EG KMV  GIDASQGQ    +DDA+DW PAVSRSTHRR++RRKA  E++++L
Sbjct: 239 PKKTEIKLEG-KMVVKGIDASQGQYDDDDDDASDWRPAVSRSTHRRFLRRKATWEHHNAL 297

Query: 301 TDKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSIL 360
            +++ QQ++E                     +++AR +   +E        G E+LSSIL
Sbjct: 298 AEQEIQQDQE---------------------ADKARHSKDPNENHAKDSGKGGEDLSSIL 336

Query: 361 NQMRLEEDSLKALPEGNE 378
             MRLEEDSL+AL EG E
Sbjct: 337 KDMRLEEDSLRALHEGTE 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800398|emb|CAN66411.1| hypothetical protein VITISV_020978 [Vitis vinifera]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/404 (55%), Positives = 277/404 (68%), Gaps = 13/404 (3%)

Query: 1   MDSTPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGA 60
           M+  P+ + CWSNIVK QPP       + +    +   SC S++GI++AVVDA AIIQG 
Sbjct: 1   MEEPPSQAPCWSNIVKAQPPPKPHXHQQALIPPNLPVGSCKSSKGISIAVVDATAIIQGG 60

Query: 61  HNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQ 120
             LT  ADKFV+V EV+ E+RDPVS ++L F+PF+ID+MEPSP+SL KVI FARATGDLQ
Sbjct: 61  EQLTRCADKFVSVSEVIDEVRDPVSXHKLAFVPFTIDTMEPSPESLKKVINFARATGDLQ 120

Query: 121 TLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWE 180
           TLSDVDLKLIALT  LE+Q+HGTKHLRD+PPP+H VNVKRLPEKD+PGWGSNV NLEEWE
Sbjct: 121 TLSDVDLKLIALTYMLESQIHGTKHLRDSPPPIHAVNVKRLPEKDMPGWGSNVPNLEEWE 180

Query: 181 ALDNDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPR 240
           AL+++  D  N NSRILPL DLNLNVI  D HSENG   + G   SE+QED +   RRP 
Sbjct: 181 ALEHEVEDGSNPNSRILPLTDLNLNVIPADDHSENGLTGNGGEARSEDQEDTDPTXRRPM 240

Query: 241 RYLPKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSL 300
           RYLPKK E+ IEGKKM             D+A DW+PAVSRSTHRRY+RRKAR E +++ 
Sbjct: 241 RYLPKKKEIKIEGKKM------------GDNAGDWLPAVSRSTHRRYLRRKARHELHEAS 288

Query: 301 TDKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEIT-EKSGSEELSSI 359
                Q + E   ++N ++++   ++ +H   E     NG +EES  T  K G   LSSI
Sbjct: 289 LGNGHQHDAEENMENNIIEDTECXDELMHESPEGKLVGNGITEESGXTGGKEGDGNLSSI 348

Query: 360 LNQMRLEEDSLKALPEGNEVDICSTTHDSDISPVVEATSDVNGN 403
           L QMRLEE SLK L EG E D      +S+   V E+TSD N +
Sbjct: 349 LQQMRLEEGSLKDLQEGKEGDFLCXGSESNNCTVAESTSDNNAH 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452344|ref|XP_004143919.1| PREDICTED: RNA-binding protein NOB1-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/373 (62%), Positives = 282/373 (75%), Gaps = 9/373 (2%)

Query: 4   TPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNL 63
           TP+ +SCWSN+VKTQP      QT +  + ++ A SC S++G+AVAVVDANAIIQG   L
Sbjct: 3   TPSPASCWSNVVKTQPAPKPQHQTPSS-SVQVFADSCKSSKGVAVAVVDANAIIQGGDKL 61

Query: 64  TNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLS 123
           ++ ADKFV+VPEVL EIRDPVSR+RL F+PF+++SM+PSPD+LNKVIKFARATGDLQTLS
Sbjct: 62  SSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLS 121

Query: 124 DVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALD 183
           DVD+KLIALT TLETQ+HGTKHLR+ PPP+H VN KRLPEKD+PGWGSNV NLEEWEAL+
Sbjct: 122 DVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALE 181

Query: 184 NDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRYL 243
            D  D     S+ILPL+DLNLN+I  D  SE+ S+E +   N E+ ++ E   RR RRY 
Sbjct: 182 QDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRYP 241

Query: 244 PKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTDK 303
           PKK E+NIEGKKMVA GIDASQGQ +D+  DW PAVSRST RRY RRKARREYY+SL +K
Sbjct: 242 PKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAEK 301

Query: 304 DSQQEKEM--GDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKS-GSEELSSIL 360
           DSQQ+ E   GD     + SG  E ++   SE     NG   ES+I E +  +E +S IL
Sbjct: 302 DSQQDVETTNGDIHVEFNGSGQSEDKI---SELPNTGNGN--ESQIGEGTNNNENISEIL 356

Query: 361 NQMRLEEDSLKAL 373
            QMRLEEDSL AL
Sbjct: 357 KQMRLEEDSLNAL 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495836|ref|XP_004159959.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein NOB1-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/373 (62%), Positives = 282/373 (75%), Gaps = 9/373 (2%)

Query: 4   TPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNL 63
           TP+ +SCWSN+VKTQP      QT +  + ++ A SC S++G+AVAVVDANAIIQG   L
Sbjct: 3   TPSPASCWSNVVKTQPAPKPQHQTPSS-SVQVFADSCKSSKGVAVAVVDANAIIQGGDKL 61

Query: 64  TNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLS 123
           ++ ADKFV+VPEVL EIRDPVSR+RL F+PF+++SM+PSPD+LNKVIKFARATGDLQTLS
Sbjct: 62  SSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLS 121

Query: 124 DVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALD 183
           DVD+KLIALT TLETQ+HGTKHLR+ PPP+H VN KRLPEKD+PGWGSNV NLEEWEAL+
Sbjct: 122 DVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALE 181

Query: 184 NDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRYL 243
            D  D     S+ILPL+DLNLN+I  D  SE+ S+E +   N E+ ++ E   RR RRY 
Sbjct: 182 QDADDPSRLTSKILPLQDLNLNIIPSDGQSEDLSLEHKDDDNLEHLDETESDSRRSRRYP 241

Query: 244 PKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTDK 303
           PKK E+NIEGKKMVA GIDASQGQ +D+  DW PAVSRST RRY RRKARREYY+SL +K
Sbjct: 242 PKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYHRRKARREYYESLAEK 301

Query: 304 DSQQEKEM--GDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKS-GSEELSSIL 360
           DSQQ+ E   GD     + SG  E ++   SE     NG   ES+I E +  +E +S IL
Sbjct: 302 DSQQDVETTNGDIHVEFNGSGQSEDKI---SELPNTGNGN--ESQIGEGTNNNENISEIL 356

Query: 361 NQMRLEEDSLKAL 373
            QMRLEEDSL AL
Sbjct: 357 KQMRLEEDSLNAL 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237579|ref|NP_198935.1| RNA-binding protein NOB1 [Arabidopsis thaliana] gi|9759165|dbj|BAB09721.1| unnamed protein product [Arabidopsis thaliana] gi|332007269|gb|AED94652.1| RNA-binding protein NOB1 [Arabidopsis thaliana]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/372 (57%), Positives = 271/372 (72%), Gaps = 29/372 (7%)

Query: 5   PNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLT 64
           P  +S WS+IVK  PP           A   +  +C ST+GI++AVVDANAII+G  +LT
Sbjct: 3   PKPTSMWSSIVKKDPPSKPPVNDGAPAAILGMVGNCKSTKGISIAVVDANAIIEGRQSLT 62

Query: 65  NFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSD 124
           NFADKFVTVPEVL+EIRDP SR RL FIPF+ID+MEPSP+SL+KVIKFARATGDLQ+LSD
Sbjct: 63  NFADKFVTVPEVLSEIRDPASRRRLAFIPFTIDTMEPSPESLSKVIKFARATGDLQSLSD 122

Query: 125 VDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDN 184
           VDLKLIAL+ TLE Q++GTK+LRD PPP+ TV VKRLPEKDLPGWGSNVANLEEWEAL+N
Sbjct: 123 VDLKLIALSYTLEAQVYGTKNLRDVPPPIQTVRVKRLPEKDLPGWGSNVANLEEWEALEN 182

Query: 185 DNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSEN-QEDGEHGLRRPRRYL 243
           +  +K N NS+ILPL+DLN+N+IA D  SE GSV S    ++EN +ED + G ++ RRY 
Sbjct: 183 ETEEKSNANSKILPLKDLNMNIIASDNVSEVGSVVS----HTENHEEDVQEGGKKHRRYP 238

Query: 244 PKKIEVNIEGKKMVAAGIDASQGQV--EDDAADWMPAVSRSTHRRYVRRKARREYYDSLT 301
           PKK E+ +EG KMV  G+DASQGQ   +DDA+DW PAVSRSTH +Y+RRKAR E+Y++L 
Sbjct: 239 PKKTEIKLEG-KMVVEGVDASQGQYDDDDDASDWRPAVSRSTHSKYLRRKARWEHYNALA 297

Query: 302 DKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSILN 361
           +++ Q+++E                     +++AR T   +E          E++SSIL 
Sbjct: 298 EQEIQKDQE---------------------ADKARHTKEANETHAKDSGKNGEDISSILK 336

Query: 362 QMRLEEDSLKAL 373
            MRLEE+SL+AL
Sbjct: 337 DMRLEEESLRAL 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969178|dbj|BAD43281.1| unknown protein [Arabidopsis thaliana]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/372 (57%), Positives = 271/372 (72%), Gaps = 29/372 (7%)

Query: 5   PNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHNLT 64
           P  +S WS+IVK  PP           A   +  +C ST+GI++AVVDANAII+G  +LT
Sbjct: 3   PKPTSMWSSIVKKDPPSKPPVNDGAPAAILGMVGNCKSTKGISIAVVDANAIIEGRQSLT 62

Query: 65  NFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSD 124
           NFADKFVTVPEVL+EIRDP SR RL FIPF+ID+MEPSP+SL+KVIKFARATGDLQ+LSD
Sbjct: 63  NFADKFVTVPEVLSEIRDPASRRRLAFIPFTIDTMEPSPESLSKVIKFARATGDLQSLSD 122

Query: 125 VDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALDN 184
           VDLKLIAL+ TLE Q++GTK+LRD PPP+ TV VKRLPEKDLPGWGSNVANLEEWEAL+N
Sbjct: 123 VDLKLIALSYTLEAQVYGTKNLRDVPPPIQTVRVKRLPEKDLPGWGSNVANLEEWEALEN 182

Query: 185 DNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSEN-QEDGEHGLRRPRRYL 243
           +  +K N NS+ILPL+DLN+N+IA D  SE GSV S    ++EN +ED + G ++ RRY 
Sbjct: 183 ETEEKSNANSKILPLKDLNMNIIASDNVSEVGSVVS----HTENHEEDVQEGGKKHRRYP 238

Query: 244 PKKIEVNIEGKKMVAAGIDASQGQV--EDDAADWMPAVSRSTHRRYVRRKARREYYDSLT 301
           PKK E+ +EG KMV  G+DASQGQ   +DDA+DW PAVSRSTH +Y+RRKAR E+Y++L 
Sbjct: 239 PKKTEIKLEG-KMVVEGVDASQGQYDDDDDASDWRPAVSRSTHSKYLRRKARWEHYNALA 297

Query: 302 DKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSILN 361
           +++ Q+++E                     +++AR T   +E          E++SSIL 
Sbjct: 298 EQEIQKDQE---------------------ADKARHTKEANETHAKDSGKNGEDISSILK 336

Query: 362 QMRLEEDSLKAL 373
            MRLEE+SL+AL
Sbjct: 337 DMRLEEESLRAL 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513405|ref|XP_003525404.1| PREDICTED: uncharacterized protein LOC100800291 [Glycine max]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/403 (53%), Positives = 284/403 (70%), Gaps = 7/403 (1%)

Query: 3   STPNSSSCWSNIVKTQPPQSAATQTKTVPAAEILAQSCNSTEGIAVAVVDANAIIQGAHN 62
           S P ++SCWSN+VK    +             +L ++  S   I+VAVVDANA+IQ    
Sbjct: 7   SVPATASCWSNVVK----KQPPPPPPQQHTERVLVETSESPNAISVAVVDANAVIQSGEK 62

Query: 63  LTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122
           L   ADKF+++PEV+ EIRDPVSR++L+F+PF+I +MEPSP+S+NKV+KFARATGDLQTL
Sbjct: 63  LHGLADKFISIPEVMEEIRDPVSRHKLSFLPFTIQTMEPSPESINKVVKFARATGDLQTL 122

Query: 123 SDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEAL 182
           SDVD+KLIALT TLE Q+HGTKHLR+APPP+  VNVKRLPEKDLPGWGSNV NL+EWEAL
Sbjct: 123 SDVDIKLIALTYTLEAQIHGTKHLREAPPPVQMVNVKRLPEKDLPGWGSNVPNLDEWEAL 182

Query: 183 DNDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRPRRY 242
           +    D  N+NSRILPL+DL+LN+++ D H  +GSVE     +S  QE  ++G  +PRRY
Sbjct: 183 EQ-TEDVSNSNSRILPLQDLSLNIVSHDEHFVDGSVERASEADSGIQEGDQNGSMKPRRY 241

Query: 243 LPKKIEVNIEGKKMVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDSLTD 302
           LPKK E+NIEGK MVA GIDASQG+V+D A DWMPAVSRSTHRRY+RRKARREY++ L+ 
Sbjct: 242 LPKKKEINIEGKMMVADGIDASQGEVDDSAGDWMPAVSRSTHRRYLRRKARREYHELLSS 301

Query: 303 KDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEESEITEKSGSEELSSILNQ 362
              QQ+ E   D +  +++  L Q  H   E+  +   T +++ + E   +E +  I+ Q
Sbjct: 302 NQDQQQLEGNVDGSVGEDASALNQPAHHNEEQHIENAVTEDDNVVKENKDNESIYEIMQQ 361

Query: 363 MRLEEDSLKALPEGNEVDICSTTHDSDISPVVEATSDVNGNST 405
           MRL+E SL+ L E ++         SD + +VE  SD  GN+T
Sbjct: 362 MRLQEGSLEVLDEESKPSSSPEELQSDNAGLVETASD--GNAT 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2163071	602	NOB1 [Arabidopsis thaliana (ta	0.906	0.609	0.514	3.1e-90
FB|FBgn0030177	472	CG2972 [Drosophila melanogaste	0.306	0.262	0.383	7.1e-17
POMBASE|SPAC1486.09	388	SPAC1486.09 "ribosome biogenes	0.456	0.476	0.29	3.7e-11
UNIPROTKB|G4MQ79	467	MGG_09254 "20S-pre-rRNA D-site	0.204	0.177	0.448	1.9e-10
RGD|735222	410	Nob1 "NIN1/RPN12 binding prote	0.427	0.421	0.271	9.6e-10
UNIPROTKB|Q9ULX3	412	NOB1 "RNA-binding protein NOB1	0.256	0.252	0.336	9.7e-10
MGI|MGI:1914869	403	Nob1 "NIN1/RPN12 binding prote	0.308	0.310	0.314	1.5e-09
WB|WBGene00021843	364	Y54E10BR.4 [Caenorhabditis ele	0.313	0.348	0.312	1.6e-09
UNIPROTKB|Q3T042	413	NOB1 "RNA-binding protein NOB1	0.256	0.251	0.326	2.1e-09
ASPGD|ASPL0000014547	431	AN8253 [Emericella nidulans (t	0.214	0.201	0.395	5e-08

TAIR|locus:2163071 NOB1 [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 201/391 (51%), Positives = 258/391 (65%)

Query:     5 PNSSSCWSNIVKTQPPQSAATQTKTVPAAEI-LAQSCNSTEGXXXXXXXXXXXXQGAHNL 63
             P  +S WS+IVK  PP S        PAA + +  +C ST+G            +G  +L
Sbjct:     3 PKPTSMWSSIVKKDPP-SKPPVNDGAPAAILGMVGNCKSTKGISIAVVDANAIIEGRQSL 61

Query:    64 TNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLS 123
             TNFADKFVTVPEVL+EIRDP SR RL FIPF+ID+MEPSP+SL+KVIKFARATGDLQ+LS
Sbjct:    62 TNFADKFVTVPEVLSEIRDPASRRRLAFIPFTIDTMEPSPESLSKVIKFARATGDLQSLS 121

Query:   124 DVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEALD 183
             DVDLKLIAL+ TLE Q++GTK+LRD PPP+ TV VKRLPEKDLPGWGSNVANLEEWEAL+
Sbjct:   122 DVDLKLIALSYTLEAQVYGTKNLRDVPPPIQTVRVKRLPEKDLPGWGSNVANLEEWEALE 181

Query:   184 NDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSEN-QEDGEHGLRRPRRY 242
             N+  +K N NS+ILPL+DLN+N+IA D  SE GSV S    ++EN +ED + G ++ RRY
Sbjct:   182 NETEEKSNANSKILPLKDLNMNIIASDNVSEVGSVVS----HTENHEEDVQEGGKKHRRY 237

Query:   243 LPKKIEVNIEGKKMVAAGIDASQGQVEDD--AADWMPAVSRSTHXXXXXXXXXXXXXDSL 300
              PKK E+ +EGK MV  G+DASQGQ +DD  A+DW PAVSRSTH             ++L
Sbjct:   238 PPKKTEIKLEGK-MVVEGVDASQGQYDDDDDASDWRPAVSRSTHSKYLRRKARWEHYNAL 296

Query:   301 TDKDSQQEKEMGDDSNNVDESGNLEQQLHLGSEEARDTNGTSEE-SEITEKSGSEELSSI 359
              +++ Q+++E  D + +  E+     + H     A+D+    E+ S I +    EE S  
Sbjct:   297 AEQEIQKDQE-ADKARHTKEAN----ETH-----AKDSGKNGEDISSILKDMRLEEESLR 346

Query:   360 LNQMRLEEDSLKALPEGNEVDICSTTHDSDI 390
               Q   EE + +A     E DI    HD ++
Sbjct:   347 ALQEETEETNAEATLINGEDDI---DHDIEV 374

GO:0005634 "nucleus" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0000469 "cleavage involved in rRNA processing" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006364 "rRNA processing" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

FB|FBgn0030177 CG2972 [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
 Identities = 51/133 (38%), Positives = 74/133 (55%)

Query:    63 LTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122
             L  +A++ +TVP+V+AE+R+     RL  +PF +   EP P+S+   ++FA+ TGD  +L
Sbjct:    24 LNEYAEQVLTVPDVVAEVRNKRQIRRLCVLPFDLQVREPRPESIKHCVEFAKKTGDYASL 83

Query:   123 SDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPE-------KDLPGWGSNVAN 175
             S +DLK+I+LT  LE    GT HLR  P    T+  K  PE       K L GW   +  
Sbjct:    84 SGIDLKVISLTYELEADNVGTDHLRQEPVMAQTIASKDKPEEMQDANNKRLVGW--YMPE 141

Query:   176 LEEWEALDNDNAD 188
              EE E  D++  D
Sbjct:   142 GEEEEEEDSEEED 154

GO:0022008 "neurogenesis" evidence=IMP

POMBASE|SPAC1486.09 SPAC1486.09 "ribosome biogenesis protein Nob1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 180 (68.4 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 58/200 (29%), Positives = 87/200 (43%)

Query:    63 LTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122
             L N A+ F T+P V+AEIRD  SR         +    P P+ + KV +FA+ TGD  +L
Sbjct:    22 LRNSAESFYTIPRVIAEIRDETSRKNFELWGDQVIQRVPKPEFIKKVSEFAKQTGDYSSL 81

Query:   123 SDVDLKLIALTCTLETQMHGTK-HLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWEA 181
             S  D++++ALT  LE + +G    LR  P   H +N K     +     S   + +    
Sbjct:    82 SVTDIQILALTYELEVEFNGGDWRLRKYPGQKH-INGKPPSNSNSTEDASKPTSSDTASV 140

Query:   182 LDNDNADKLNTNSRILPLRDLNLNVIAGDYHSENGSVESQGGGNSE---NQEDGEH-GLR 237
              + +N+D  +  + +L              HS N         N E   N+ED E  G  
Sbjct:   141 KETENSDPKSAENEVLEGETTQ--------HSNNKEAHPNTEENKEQEDNEEDDEDDGWI 192

Query:   238 RPRRYLPKKIEVNIEGKKMV 257
              P     KK E  + G+ +V
Sbjct:   193 TPSNIRKKKAEDGV-GESLV 211

GO:0003723 "RNA binding" evidence=ISO

GO:0004521 "endoribonuclease activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0030688 "preribosome, small subunit precursor" evidence=ISO

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISO

GO:0043248 "proteasome assembly" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G4MQ79 MGG_09254 "20S-pre-rRNA D-site endonuclease NOB1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 164 (62.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 39/87 (44%), Positives = 53/87 (60%)

Query:    67 ADKFVTVPEVLAEIRDPVSRNRLN--FIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSD 124
             A++  T+P VL EIRD  +R R+N   +PF +    P P+S+  V  FAR TGDL+ LS 
Sbjct:    69 AEELYTIPAVLEEIRDEATRTRINNTLLPF-LKLRSPKPESIKFVSDFARRTGDLEVLSR 127

Query:   125 VDLKLIALTCTLETQMH-GTKHLRDAP 150
              D+ LIALT  LE + + G   LR+ P
Sbjct:   128 PDIALIALTYELEIERNNGDWRLRNTP 154

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|735222 Nob1 "NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 9.6e-10, P = 9.6e-10
 Identities = 50/184 (27%), Positives = 87/184 (47%)

Query:    63 LTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122
             L +      T+ EV+ EIRD  +R RL  +P+ +   EP P+ +  V +F++ TGD  +L
Sbjct:    20 LQDIGKNIYTIREVVREIRDKATRRRLAVLPYELRFKEPFPEYVRLVTEFSKKTGDYPSL 79

Query:   123 SDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEE--WE 180
             S  D++++ALT  LE +  G  HL+  P  +   +  + PE  L   G ++ +  +   E
Sbjct:    80 SATDIQVLALTYQLEAEFVGVSHLKKEPEKVKVSSSIQHPETPLHISGFHLPSKSKALQE 139

Query:   181 ALDN----DNADKLNTNSRI-----LPLRDLNLNVIAGDYHSENGSVESQGGGNSENQED 231
              +D+    D ++ L  +S +     LP  D  L  +  D   E    E +     E ++ 
Sbjct:   140 TVDHGPPADGSENLEFSSFMFWRNPLPNIDHELQQLLIDGREEEEEEEEEEEEEDELEDS 199

Query:   232 GEHG 235
              + G
Sbjct:   200 DDDG 203

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9ULX3 NOB1 "RNA-binding protein NOB1" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 35/104 (33%), Positives = 57/104 (54%)

Query:    63 LTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122
             L +      T+ EV+ EIRD  +R RL  +P+ +   EP P+ +  V +F++ TGD  +L
Sbjct:    20 LQDIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSL 79

Query:   123 SDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDL 166
             S  D++++ALT  LE +  G  HL+  P  +   +  + PE  L
Sbjct:    80 SATDIQVLALTYQLEAEFVGVSHLKQEPQKVKVSSSIQHPETPL 123

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1914869 Nob1 "NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 40/127 (31%), Positives = 67/127 (52%)

Query:    63 LTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122
             L +      T+ EV+ EIRD  +R RL  +P+ +   EP P+ +  V +F++ TGD  +L
Sbjct:    20 LQDIGKNIYTIREVVREIRDKATRRRLAVLPYQLRFKEPLPEYVRLVTEFSKKTGDYPSL 79

Query:   123 SDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEE--WE 180
             S  D++++ALT  LE +  G  HL+  P      +  + PE  L   G ++ +  +   E
Sbjct:    80 SATDIQVLALTYQLEAEFVGVSHLKKEPEKAKVSSSIQHPETALHISGFHLPSKSKPLQE 139

Query:   181 ALDNDNA 187
             A+D  +A
Sbjct:   140 AVDRGHA 146

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISA

GO:0005730 "nucleolus" evidence=ISA

GO:0005737 "cytoplasm" evidence=ISA

GO:0030490 "maturation of SSU-rRNA" evidence=ISA

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00021843 Y54E10BR.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 165 (63.1 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 40/128 (31%), Positives = 65/128 (50%)

Query:    62 NLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQT 121
             NL   AD +   P++L E+R   +R   N +PF +   EP+  +L  VI  ++ TGD Q+
Sbjct:    23 NLHALADHYYAPPQILDELRSSAARKLWNTLPFEVTLREPTQTALRAVIDASKTTGDFQS 82

Query:   122 LSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEK-DLPGWGSNVANLEEWE 180
             LS VD+K+IALT  L  Q      + +        N++ L  K +    G N  + +E E
Sbjct:    83 LSMVDIKMIALTYDLHRQYVAENDVAETTEDDEKKNIEDLSAKVEQVTVGENTEDTKEEE 142

Query:   181 ALDNDNAD 188
               +N+ ++
Sbjct:   143 IEENEESE 150

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q3T042 NOB1 "RNA-binding protein NOB1" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 34/104 (32%), Positives = 57/104 (54%)

Query:    63 LTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTL 122
             L +      T+  V++EIRD  +R RL  +P+ +   EP P+ +  V +F++ TGD  +L
Sbjct:    20 LQDIGKNIYTIRNVISEIRDKATRRRLAVLPYELRFKEPFPEYVRLVTEFSKKTGDYPSL 79

Query:   123 SDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDL 166
             S  D++++ALT  LE +  G  HL+  P  +   +  + PE  L
Sbjct:    80 SATDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSIQHPETPL 123

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000014547 AN8253 [Emericella nidulans (taxid:162425)]

 Score = 150 (57.9 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
 Identities = 36/91 (39%), Positives = 53/91 (58%)

Query:    63 LTNFADKFVTVPEVLAEIRDPVSRNRLN--FIPFSIDSMEPSPDSLNKVIKFARATGDLQ 120
             L +  ++ VT P V+AEIRDP +R RL   ++PF +    PSP S   + +FA+ TGD  
Sbjct:    30 LLSRCEELVTTPSVVAEIRDPDARQRLETMYLPF-LKQRTPSPKSFAVLSEFAKKTGDRA 88

Query:   121 TLSDVDLKLIALTCTLETQMHGTK-HLRDAP 150
              LS  D++++AL   LE + +G    LR  P
Sbjct:    89 VLSRTDIEVLALAYELECERNGGDWRLRSVP 119

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0392 hypothetical protein (588 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
cd09876	109	cd09876, PIN_Nob1, PIN domain of eukaryotic riboso	2e-42
PRK12496	164	PRK12496, PRK12496, hypothetical protein; Provisio	6e-14
COG1439	177	COG1439, COG1439, Predicted nucleic acid-binding p	2e-11

>gnl|CDD|189046 cd09876, PIN_Nob1, PIN domain of eukaryotic ribosome assembly factor Nob1 and archaeal UPF0129 protein Ta0041-like homologs

 Score =  144 bits (365), Expect = 2e-42
 Identities = 50/110 (45%), Positives = 71/110 (64%), Gaps = 2/110 (1%)

Query: 50  VVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKV 109
           V+DA A I+GA  L+  A++  T PEV+AEIRD  +R RL  +PF +   EPSP+S+  V
Sbjct: 2   VLDAGAFIKGAP-LSTLAEELYTTPEVVAEIRDKQARRRLATLPFELKVREPSPESIKAV 60

Query: 110 IKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVK 159
            +FA+ TGD  +LS  D+K+IALT  LE ++ G  HLR+ P     ++ K
Sbjct: 61  SEFAKKTGDYASLSATDIKVIALTYELEAELVGDDHLRNEPGRK-KISSK 109

PIN (PilT N terminus) domain of the Saccharomyces cerevisiae ribosome assembly factor, Nob1 (Nin one binding) protein, the Thermoplasma acidophilum DSM 1728, UPF0129 protein Ta0041, and similar eukaryotic and archaeal homologs are included in this family. The Nob1 PIN domain binds the single-stranded cleavage site D at the 3#end of 18S rRNA. Recombinant Nob1 binds as a tetramer to pre-18S rRNA fragments containing cleavage site D and believed to cleave at this site. These PIN domains are homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. PIN domains within this subgroup contain three highly conserved acidic residues (putative metal-binding, active site residues). Length = 109

>gnl|CDD|237118 PRK12496, PRK12496, hypothetical protein; Provisional

 Score = 68.9 bits (169), Expect = 6e-14
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 50  VVDANAIIQGAHNLTNFADKF-VTVPEVLAEIRDPVSRNRLN-FIPFS-IDSMEPSPDSL 106
           V+DA+A I G     N  D    T P V+ E++D  SR  L   I    +  +EPSP+S+
Sbjct: 5   VLDASAFIHG----YNPEDGEHYTTPSVVEEVKDKESRLILESAISAGKLKILEPSPESI 60

Query: 107 NKVIKFARATGDLQTLSDVDLKLIALTCTLE 137
            KV + A  TGDL  LS+ D++++AL   L 
Sbjct: 61  EKVEEAAIKTGDLMRLSNTDIEVLALALELN 91

Length = 164

>gnl|CDD|224356 COG1439, COG1439, Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 48  VAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLN--FIPFSIDSMEPSPDS 105
           + V+D +A I G   L     +  T P V+ EI+D  SR+ L        +   EPS + 
Sbjct: 8   LYVLDTSAFINGKIPL-LLDGRLYTTPSVVEEIKDRESRSLLELLLESGKVKVAEPSTEY 66

Query: 106 LNKVIKFARATGDLQTLSDVDLKLIALT 133
           + +V + A+ TGDL  LS  D++++AL 
Sbjct: 67  VKEVREAAKKTGDLGNLSPTDIEVLALA 94

Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
KOG2463	376	consensus Predicted RNA-binding protein Nob1p invo	99.97
PRK12496	164	hypothetical protein; Provisional	99.79
COG1439	177	Predicted nucleic acid-binding protein, consists o	99.79
smart00670	111	PINc Large family of predicted nucleotide-binding	97.64
PRK04358	217	hypothetical protein; Provisional	97.49
TIGR03875	206	RNA_lig_partner RNA ligase partner, MJ_0950 family	97.28
PF08745	205	UPF0278: UPF0278 family; InterPro: IPR022785 This	97.09
PF14367	162	DUF4411: Domain of unknown function (DUF4411)	95.4
PF01850	121	PIN: PIN domain; InterPro: IPR002716 The PilT prot	91.03
TIGR00028	142	Mtu_PIN_fam Mycobacterium tuberculosis PIN domain	88.3
PF10130	133	PIN_2: PIN domain; InterPro: IPR019298 This entry	86.47

>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.4e-32  Score=264.58  Aligned_cols=113  Identities=49%  Similarity=0.726  Sum_probs=109.0

Q ss_pred             CCceEEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCCCCcEEeCCChhHHHHHHHHHHHhCCCCCCC
Q 045218           44 EGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLS  123 (405)
Q Consensus        44 ~~ik~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp~~LkIrEPs~EsIkkV~eFAKKTGD~~sLS  123 (405)
                      ++|+++|+||+|||.+ ..++.+|+.|||+|+|+.||||..+|++|+.|||+|++|+|++++|++|++|||+||||++||
T Consensus         3 ~~i~hlViDt~aiI~~-~~l~n~a~~fYt~p~V~~EIrd~asRk~le~~pf~i~~rePspe~v~kV~~fak~TGDyssLS   81 (376)
T KOG2463|consen    3 PKIMHLVIDTGAIIEK-RILTNKADSFYTTPEVVNEIRDAASRKRLEFLPFTIKLREPSPEYVRKVIKFAKLTGDYSSLS   81 (376)
T ss_pred             CceeEEEEeccccccc-cchhhhhhcccccHHHHHHhhCHHhhcchhhcccEEEEecCCHHHHHHHHHHHHhcCCccccc
Confidence            4589999999999999 778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhcceeecccccccCCCCCccccc
Q 045218          124 DVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVN  157 (405)
Q Consensus       124 ~TDIkVIALAyeLe~E~~Gt~hLR~eP~~~~~v~  157 (405)
                      .|||+||||||+|+.+.+|.++||+.|.+.++..
T Consensus        82 ~tDi~vlALTYeLe~e~~g~~~Lr~~p~~~~~~~  115 (376)
T KOG2463|consen   82 DTDIKVLALTYELEAEVVGGDRLRKKPGDALDAS  115 (376)
T ss_pred             cccceeeeeeeeeehhhcccccccccCcchhhcc
Confidence            9999999999999999999999999999887766

>PRK12496 hypothetical protein; Provisional

Probab=99.79  E-value=1.4e-19  Score=162.39  Aligned_cols=93  Identities=35%  Similarity=0.493  Sum_probs=83.6

Q ss_pred             eEEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCCC--CcEEeCCChhHHHHHHHHHHHhCCCCCCCh
Q 045218           47 AVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIPF--SIDSMEPSPDSLNKVIKFARATGDLQTLSD  124 (405)
Q Consensus        47 k~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp~--~LkIrEPs~EsIkkV~eFAKKTGD~~sLS~  124 (405)
                      .++|+||||||++ ..+.  .+++||||+|++||+|.+++.+|+.+..  .|+|++|+++++..|.+||++||||..||.
T Consensus         2 m~~VlDtS~~I~~-~~~~--~~~i~tp~~V~~Ev~d~~~~~~~~~l~~~~~i~v~~p~~~~i~~v~~~a~~tgd~~~Ls~   78 (164)
T PRK12496          2 MIKVLDASAFIHG-YNPE--DGEHYTTPSVVEEVKDKESRLILESAISAGKLKILEPSPESIEKVEEAAIKTGDLMRLSN   78 (164)
T ss_pred             CEEEEEChHHHcc-chhh--CCCEEecHHHHHHHhCHHHHHHHHHhcccCCeEEECCCHHHHHHHHHHHHhcCCccccch
Confidence            4799999999998 5443  4789999999999999999999987743  499999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcceeecc
Q 045218          125 VDLKLIALTCTLETQMHG  142 (405)
Q Consensus       125 TDIkVIALAyeLe~E~~G  142 (405)
                      +|++|||||++|......
T Consensus        79 ~D~~~iaLA~el~~~lvt   96 (164)
T PRK12496         79 TDIEVLALALELNGTLYT   96 (164)
T ss_pred             hhHHHHHHHHHhCCcEEC
Confidence            999999999999876544

>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]

Probab=99.79  E-value=1.4e-19  Score=165.95  Aligned_cols=91  Identities=33%  Similarity=0.502  Sum_probs=81.5

Q ss_pred             EEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCC--CCcEEeCCChhHHHHHHHHHHHhCCCCCCChH
Q 045218           48 VAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIP--FSIDSMEPSPDSLNKVIKFARATGDLQTLSDV  125 (405)
Q Consensus        48 ~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp--~~LkIrEPs~EsIkkV~eFAKKTGD~~sLS~T  125 (405)
                      .+|+||+|||+|..++. +....||||+|++||||.++|-.++.+.  +.++|++|++|+++.|++.|++|||+..||.|
T Consensus         8 ~~vlDtsa~I~g~~~~~-~~g~~yttp~Vv~Eikd~~s~~~~e~~~~~~~~kv~~P~~e~vk~V~e~a~~tgd~~~LS~t   86 (177)
T COG1439           8 LYVLDTSAFINGKIPLL-LDGRLYTTPSVVEEIKDRESRSLLELLLESGKVKVAEPSTEYVKEVREAAKKTGDLGNLSPT   86 (177)
T ss_pred             eEEecchhhccCCCCcc-cCCcccccHHHHHHHhchhhhHHHHHHhhhcCeeEecCCHHHHHHHHHHHHhhCcccccChh
Confidence            59999999999965532 1234899999999999999998887753  58999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccee
Q 045218          126 DLKLIALTCTLETQ  139 (405)
Q Consensus       126 DIkVIALAyeLe~E  139 (405)
                      ||+|||||++|..+
T Consensus        87 Di~VlalAlel~~~  100 (177)
T COG1439          87 DIEVLALALELGEE  100 (177)
T ss_pred             hHHHHHHHHhhccc
Confidence            99999999999996

>smart00670 PINc Large family of predicted nucleotide-binding domains

Probab=97.64  E-value=2.8e-06  Score=67.84  Aligned_cols=87  Identities=20%  Similarity=0.155  Sum_probs=63.2

Q ss_pred             EEEechhhhcCCCC---ccccc---CcceehhhHhhhcCCHH---HHhhhhcCC--CCcEEeCCChhHHHHHHHHHHHhC
Q 045218           49 AVVDANAIIQGAHN---LTNFA---DKFVTVPEVLAEIRDPV---SRNRLNFIP--FSIDSMEPSPDSLNKVIKFARATG  117 (405)
Q Consensus        49 lVLDTsAFIkg~~~---L~~~a---~kiYTtPeVI~EIRDk~---SR~rLe~Lp--~~LkIrEPs~EsIkkV~eFAKKTG  117 (405)
                      +|+||++||.. ..   +..+.   .++|+++.|+.|++...   ++.+|..+.  ..+.+..|.... ..+..++..+|
T Consensus         1 ~vlDTnvli~~-~~~~~~~~~~~~~~~~~i~~~v~~El~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~   78 (111)
T smart00670        1 VVLDTNVLIDG-LIGKALEKLLEKKGEVYIPPTVLEELEYLAKLRSLKKLEELALEGKIKLKVLKEER-KLEEEILERLS   78 (111)
T ss_pred             CEeeHHHHHHH-HHHHHHHHHHcCCCcEEECHHHHHHHHHHHHHHHHhhHHHHHHhcccccceeecCC-CeEEEecccCC
Confidence            58999999977 32   33221   57899999999999976   566666543  245565565553 24456777777


Q ss_pred             CCCCCChHHHHHHHhhhhcc
Q 045218          118 DLQTLSDVDLKLIALTCTLE  137 (405)
Q Consensus       118 D~~sLS~TDIkVIALAyeLe  137 (405)
                      +...++.+|..+||+|+.+.
T Consensus        79 ~~~~~~~~D~~il~~a~~~~   98 (111)
T smart00670       79 LKLELLPNDALILATAKELG   98 (111)
T ss_pred             hhhcCCCChHHHHHHHHHCC
Confidence            77779999999999999984

From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.

>PRK04358 hypothetical protein; Provisional

Probab=97.49  E-value=8.1e-05  Score=71.25  Aligned_cols=28  Identities=25%  Similarity=0.246  Sum_probs=23.7

Q ss_pred             HHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218          113 ARATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       113 AKKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      |-++|  ..+|.+||+|||||++|.+....
T Consensus       153 Alr~G--~ldS~~DidvlaLA~ELda~lvT  180 (217)
T PRK04358        153 ALRKG--ILDSAEDLDVLLLAKELDAAVVS  180 (217)
T ss_pred             HHHcC--cccchhhHHHHHHHHHhCCEEEe
Confidence            45678  48999999999999999887654

>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family

Probab=97.28  E-value=0.00016  Score=68.84  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             CCChHHHHHHHhhhhcceeecc
Q 045218          121 TLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       121 sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      -+|.+||+|||||++|.+..+.
T Consensus       155 LdS~~DidvlaLA~ELda~lvT  176 (206)
T TIGR03875       155 LDSAEDLDVLLLAKELDAAVVS  176 (206)
T ss_pred             cCchhhHHHHHHHHHcCcEEEe
Confidence            5899999999999999887654

This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.

>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains

Probab=97.09  E-value=0.00023  Score=67.77  Aligned_cols=27  Identities=19%  Similarity=0.183  Sum_probs=15.1

Q ss_pred             HHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218          114 RATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       114 KKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      -++|.  -+|.+|++||+|||+|.+..+.
T Consensus       147 lr~G~--ldS~~D~dvl~LA~El~a~lvt  173 (205)
T PF08745_consen  147 LRKGI--LDSREDIDVLLLALELDAVLVT  173 (205)
T ss_dssp             ----------HHHHHHHHHHHHHT--EE-
T ss_pred             ccccc--CCChHhHHHHHHHHHcCCEEEe
Confidence            34454  3499999999999999997654

Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.

>PF14367 DUF4411: Domain of unknown function (DUF4411)

Probab=95.40  E-value=0.042  Score=49.40  Aligned_cols=129  Identities=15%  Similarity=0.042  Sum_probs=74.6

Q ss_pred             EEEechhhhcC---CCCcc------------cccCcceehhhHhhhcC--CHHHHhhhhcCCC-CcEEeCCChhHHHH--
Q 045218           49 AVVDANAIIQG---AHNLT------------NFADKFVTVPEVLAEIR--DPVSRNRLNFIPF-SIDSMEPSPDSLNK--  108 (405)
Q Consensus        49 lVLDTsAFIkg---~~~L~------------~~a~kiYTtPeVI~EIR--Dk~SR~rLe~Lp~-~LkIrEPs~EsIkk--  108 (405)
                      |+||||+||..   +.+.+            ...+.++++.+|.+||.  +..-...+..+.. ...+..++...+..  
T Consensus         1 YllDtN~~I~a~~~yY~~d~~p~fW~~L~~~~~~g~i~~~~~V~~El~~~~d~l~~W~k~~~~~~~~~~~~d~~~~~~~~   80 (162)
T PF14367_consen    1 YLLDTNVFIQAWNRYYPFDIFPSFWDWLEQLIESGRIISPDEVYDELERGDDELAKWAKNNEPKFFFFSTDDEAIQAEYA   80 (162)
T ss_pred             CccchHHHHHHHHhcCCchHHHHHHHHHHHHHhCCeEeehHHHHHHHhhCChhHHHHHHhCCccccccCCChHHHHHHHH
Confidence            68999999943   23322            11458999999999999  3344455555543 24455555445444  


Q ss_pred             -HHHHH-HHhCCC------CCCChHHHHHHHhhhhcceeecccccccCCCCCcccccccCCCCCCCCCCCCcCCChHHHH
Q 045218          109 -VIKFA-RATGDL------QTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEKDLPGWGSNVANLEEWE  180 (405)
Q Consensus       109 -V~eFA-KKTGD~------~sLS~TDIkVIALAyeLe~E~~Gt~hLR~eP~~~~~v~~k~~~ek~lpG~gfn~P~~~eWe  180 (405)
                       |..++ ...+-|      .-|+..|--|||.|+......+..+..  .|...+     .+..=+-.+-.|+||-.+-.+
T Consensus        81 ~v~~~~~~~~~~~~~~a~~~f~~~ADp~LIA~A~~~~~~VVT~E~~--~~~~~~-----~~~KIPdvC~~~gV~ci~~~~  153 (162)
T PF14367_consen   81 EVLNWVIINSQQYKKGAKDEFLSVADPWLIAYAKAYGATVVTHEVS--NPNKKK-----KKIKIPDVCEHFGVPCINLFE  153 (162)
T ss_pred             HHHHHHhhcchhhchhHHhhhcccCCHHHHHHHHhcCCEEEccCCC--CCCCCc-----cCCCCChhHHhCCCcCCCHHH
Confidence             44443 222222      225999999999999988766654433  111111     011113334456688777766


Q ss_pred             Hhhh
Q 045218          181 ALDN  184 (405)
Q Consensus       181 ~ld~  184 (405)
                      -|.+
T Consensus       154 ~lr~  157 (162)
T PF14367_consen  154 FLRE  157 (162)
T ss_pred             HHHH
Confidence            6644

>PF01850 PIN: PIN domain; InterPro: IPR002716 The PilT protein, N-terminal domain (PIN) is a compact domain of about 100 amino acids

Probab=91.03  E-value=0.3  Score=38.79  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=64.0

Q ss_pred             EEEechhhhcCC--CCcc-------cccCcceehhhHhhhcCCHHHH--------hh--hhcCCCCcEEeCCChhHHHHH
Q 045218           49 AVVDANAIIQGA--HNLT-------NFADKFVTVPEVLAEIRDPVSR--------NR--LNFIPFSIDSMEPSPDSLNKV  109 (405)
Q Consensus        49 lVLDTsAFIkg~--~~L~-------~~a~kiYTtPeVI~EIRDk~SR--------~r--Le~Lp~~LkIrEPs~EsIkkV  109 (405)
                      ++||||++|.-.  .+..       .....+|+++-|+.|+--.-.+        ..  +..+...+.+...+.+....+
T Consensus         1 i~lDTsili~~~~~~~~~~~~~~~~~~~~~~~is~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   80 (121)
T PF01850_consen    1 ILLDTSILIALLRDEENHEKARELLERAIEIVISSLVLAELLYVLRRRSKQQKAIALLELLILLSNFNILPITSEVFERA   80 (121)
T ss_dssp             EEE-HHHHHHHHSHSCHHHHHHHHHHTHSEEEEEHHHHHHHHHHHHHSHCHHHHHHHHHHHHHHCTSEEEEBCHHHHHHH
T ss_pred             EEEcChhhccccCCChhHHHHHHHHhcCCCEEEcHHHHHHHHHHhhhccccchhhhHHHHHHHHhhhccccchhHHHHHH
Confidence            689999999521  1110       1116889999999999765544        11  111234588888999999999


Q ss_pred             HHHHHHhCCCCCCChHHHHHHHhhhhcceeec
Q 045218          110 IKFARATGDLQTLSDVDLKLIALTCTLETQMH  141 (405)
Q Consensus       110 ~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~  141 (405)
                      .++..+.|    ++..|.-++|+|........
T Consensus        81 ~~~~~~~~----~~~~Da~~~a~A~~~~~~~v  108 (121)
T PF01850_consen   81 AELMRKYG----LDFADALIAATAKENGAPLV  108 (121)
T ss_dssp             HHHHHHHH----SSHHHHHHHHHHHHHT-EEE
T ss_pred             HHHHHhcc----CChhHHHHHHHHHHcCCEEE
Confidence            99999988    99999999999999887654

The domain has two nearly invariant aspartates and forms a coiled-coil with other monomer units to polymerise a pilus fibre []. The function of the PIN domain is unknown but a role in signalling appears likely given the presence of this domain in some bacterial plasmid stability proteins and Dis3 from yeast that is implicated in mitotic control [].; PDB: 3TND_G 2H1O_B 2BSQ_B 2H1C_A 2FE1_A 3ZVK_C 1V8P_F 1V8O_C 3H87_A 1O4W_A ....

>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family

Probab=88.30  E-value=1  Score=37.26  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=57.7

Q ss_pred             EEEechhhhcCC---CC--------cccc--cCcceehhhHhhhcCC--------------HHHHhhhhcCC--CCcEEe
Q 045218           49 AVVDANAIIQGA---HN--------LTNF--ADKFVTVPEVLAEIRD--------------PVSRNRLNFIP--FSIDSM   99 (405)
Q Consensus        49 lVLDTsAFIkg~---~~--------L~~~--a~kiYTtPeVI~EIRD--------------k~SR~rLe~Lp--~~LkIr   99 (405)
                      ++||||.||...   .+        +...  ...+++++.|+.|+.-              ...+..|..+.  ..+.+.
T Consensus         2 i~lDTnvli~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vl~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (142)
T TIGR00028         2 LLLDVNVLLAAVNRDHPHHDAARAWLDRFAAGGDWATCPLTLAGFVRLLTNPRVLPAPLSPAEAIAVVAAFLATPRHRLL   81 (142)
T ss_pred             ccchhhHHHHhcCCCCcchHHHHHHHHHHhcCCCceechhhhhhheeeeccCCcCCCCCCHHHHHHHHHHHHhCCCeeec
Confidence            789999999641   11        1111  1357888899999732              22233344332  235555


Q ss_pred             CCChhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc-ccccc
Q 045218          100 EPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG-TKHLR  147 (405)
Q Consensus       100 EPs~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G-t~hLR  147 (405)
                      .|.+........+++.-|+ ...+..|.-++|+|.+....... ..+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~~~~D~~i~a~A~~~~~~lvT~D~~f~  129 (142)
T TIGR00028        82 WPGPRHLAVLRGLADPVIA-GGRLVTDAHLAALAREHGAELVTFDRGFA  129 (142)
T ss_pred             CCCcchHHHHHHHHHHhcc-CCCCchHHHHHHHHHHcCCEEEecCCCcc
Confidence            5655444444445555443 34678999999999999865543 23444

Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.

>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases)

Probab=86.47  E-value=0.49  Score=42.02  Aligned_cols=87  Identities=21%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             EEechhhhcCC-----CC---cccccCcceehhhHhhhcCCHHHHhh-------------hhcCCCCcEEeCCChhHHHH
Q 045218           50 VVDANAIIQGA-----HN---LTNFADKFVTVPEVLAEIRDPVSRNR-------------LNFIPFSIDSMEPSPDSLNK  108 (405)
Q Consensus        50 VLDTsAFIkg~-----~~---L~~~a~kiYTtPeVI~EIRDk~SR~r-------------Le~Lp~~LkIrEPs~EsIkk  108 (405)
                      |||||.||+.-     ..   +..-...+||+..++.||+....+..             |..|...|+|.. ...+-..
T Consensus         1 VvDaNIl~Sall~~~~~~~~~~~~~~~~f~~p~~~~~Ei~kh~~~I~~k~~l~~~~~~~~l~~l~~~I~iv~-~~~~~~~   79 (133)
T PF10130_consen    1 VVDANILFSALLGKRSRTRILLVEPRIEFFAPDYALEEIEKHLPKIAKKSKLSEEELEEVLNILFSRIKIVP-EEIYSEN   79 (133)
T ss_pred             CccHHHHHHHHHccCcceeeeecccchheeccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhheEEec-HHHhHHH
Confidence            68888777531     00   11112488999999999986443221             222333456654 4444477


Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHhhhhcceee
Q 045218          109 VIKFARATGDLQTLSDVDLKLIALTCTLETQM  140 (405)
Q Consensus       109 V~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~  140 (405)
                      ..++.+..+|.   -.-|+-.+|||+.|.+..
T Consensus        80 ~~~A~~~~~~~---D~~D~p~vALaL~l~~~I  108 (133)
T PF10130_consen   80 IEEAREIIRDR---DPDDWPFVALALQLNAPI  108 (133)
T ss_pred             HHHHHHHhcCC---CcchHHHHHHHHHcCCCe
Confidence            77777777764   678999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	2e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Length = 165

 Score =  114 bits (286), Expect = 2e-30
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 50  VVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFI--PFSIDSMEPSPDSLN 107
           V+D++  IQG         +  T P V+ EI+D  S+  L  +     +   EPS +S++
Sbjct: 14  VLDSSVFIQG------IDIEGYTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESID 67

Query: 108 KVIKFARATGDLQTLSDVDLKLIALTCTLETQMHGTKHLRDAPPPLHTVNVKRLPEK 164
           ++I+ A+ TG++  LS  D++++AL   L+ ++    +       L  +  + L   
Sbjct: 68  RIIQVAKETGEVNELSKADIEVLALAYELKGEIFSDDYNVQNIASLLGLRFRTLKRG 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 39/400 (9%), Positives = 102/400 (25%), Gaps = 108/400 (27%)

Query: 33  AEILAQSCNSTEGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLN-F 91
              +         +    ++    +   + +  FA   V+  +   ++R  +   R    
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 92  IPFSIDSM------------------EPSPDSLNKV--IKFARATGDLQTLSDVDLKLIA 131
           +   ID +                  +   D   K+  +             +  L+++ 
Sbjct: 153 V--LIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNCNSP-----ETVLEMLQ 203

Query: 132 LTCTLETQMHGTKHLRDAPPPLHTVNVKR-----LPEKDLPGWGS-----NVANLEEWEA 181
                      ++    +   L   +++      L  K            NV N + W A
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNVQNAKAWNA 261

Query: 182 LDNDNADKLNTNSRILPL-RDLNL-NVIAGDYHSENGSVESQGGGNSENQEDGEHGLRRP 239
            +         + +IL   R   + + ++    +             +  +         
Sbjct: 262 FNL--------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-------- 305

Query: 240 RRYLPKKIEVNI-----EGKK---MVAAGIDASQGQVEDDAADWMPAVSRSTHRRYVR-R 290
              L K ++        E         + I  S   + D  A W        H    +  
Sbjct: 306 --LLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATW----DNWKHVNCDKLT 356

Query: 291 KARREYYDSLTDKDSQQE-KEMG---DDSN-------------NVDESGNLEQQLHLGSE 333
                  + L   + ++    +      ++                +   +  +LH  S 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 334 EARDTNGTSEESEITEKSGSEELSSILNQMRLEEDSLKAL 373
             +             K  +  + SI  +++++ ++  AL
Sbjct: 417 VEKQP-----------KESTISIPSIYLELKVKLENEYAL 445

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 50/342 (14%), Positives = 99/342 (28%), Gaps = 113/342 (33%)

Query: 28  KTVPAAEILAQ-----------------SCNSTEGIAVAVVDANAIIQGAHNLTNFADKF 70
           KT  A ++                    +CNS E +   +     + Q   N T+ +D  
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHS 220

Query: 71  VTVPEVLAEIRDPVSRNRLNFIPFSIDSMEPSPDSLNKVIKFARATGDLQTLSDV-DLKL 129
             +   +  I+  + R     +       +P  + L  ++           L +V + K 
Sbjct: 221 SNIKLRIHSIQAELRR----LL-----KSKPYENCL--LV-----------LLNVQNAKA 258

Query: 130 IA---LTC-TLET----------QMHGTKHLR--DAPPPLHTVNVKRL-------PEKDL 166
                L+C  L T              T H+        L    VK L         +DL
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 167 PGWGSNV---------ANLEE----WEALDNDNADKLNTNSRILPLRDLNLNVIAGD--- 210
           P                ++ +    W+   + N DKL T      + + +LNV+      
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT------IIESSLNVLEPAEYR 372

Query: 211 --YHS-----ENGSVESQ------GGGNSENQEDGEHGLRRPRRYLPKKIEVNIEGKKMV 257
             +        +  + +             +     + L +    + K+     E    +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQ---PKESTISI 428

Query: 258 AAGIDASQGQVEDDAADWMPAVSRSTHRRYVRRKARREYYDS 299
            +     + ++E++ A          HR  V      + +DS
Sbjct: 429 PSIYLELKVKLENEYA---------LHRSIVDHYNIPKTFDS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	99.61
3ix7_A	134	Uncharacterized protein TTHA0540; unknown function	95.38
3i8o_A	142	KH domain-containing protein MJ1533; APC89320.5, m	95.23
2fe1_A	156	Conserved hypothetical protein PAE0151; PIN domain	92.75
1w8i_A	156	Putative VAPC ribonuclease AF_1683; structural gen	92.36
1v8p_A	158	Hypothetical protein PAE2754; PIN-domain, tetramer	91.23

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}

Probab=99.61  E-value=6.3e-16  Score=134.54  Aligned_cols=92  Identities=29%  Similarity=0.482  Sum_probs=82.1

Q ss_pred             CCceEEEEechhhhcCCCCcccccCcceehhhHhhhcCCHHHHhhhhcCC-C-CcEEeCCChhHHHHHHHHHHHhCCCCC
Q 045218           44 EGIAVAVVDANAIIQGAHNLTNFADKFVTVPEVLAEIRDPVSRNRLNFIP-F-SIDSMEPSPDSLNKVIKFARATGDLQT  121 (405)
Q Consensus        44 ~~ik~lVLDTsAFIkg~~~L~~~a~kiYTtPeVI~EIRDk~SR~rLe~Lp-~-~LkIrEPs~EsIkkV~eFAKKTGD~~s  121 (405)
                      ++++++|+|||+||.+ ..+     .+|||+.|++||++.++|..|..+. . .|++++|.++++..|.++++++|||..
T Consensus         8 ~~~~~~VlDTs~lI~~-~~~-----~l~~p~~V~~El~~~~~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~~~~gd~~~   81 (165)
T 2lcq_A            8 NLKKTLVLDSSVFIQG-IDI-----EGYTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNE   81 (165)
T ss_dssp             CCCSSCEECHHHHHHT-CCC-----CEEECHHHHTTCCSSHHHHHHHHHHHTTSEEECCCCHHHHHHHHHHHHHHSCSSC
T ss_pred             CCCcEEEEcChHHHcC-CCC-----CEEEChhhHHhhcCHHHHHHHHHhhccCCEEEecCCHHHHHHHHHHHHHcCCccc
Confidence            4556789999999998 433     8999999999999999998888763 3 599999999999999999999999999


Q ss_pred             CChHHHHHHHhhhhcceeec
Q 045218          122 LSDVDLKLIALTCTLETQMH  141 (405)
Q Consensus       122 LS~TDIkVIALAyeLe~E~~  141 (405)
                      ||.+|++|||||+++.....
T Consensus        82 Ls~~D~~lIaLA~~l~~~lv  101 (165)
T 2lcq_A           82 LSKADIEVLALAYELKGEIF  101 (165)
T ss_dssp             SCHHHHHHHHHHHHHTCCEE
T ss_pred             CCHHHHHHHHhHHHhCCeEE
Confidence            99999999999999997543

>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}

Probab=95.38  E-value=0.011  Score=51.24  Aligned_cols=79  Identities=20%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             eEEEEechhhhcCCC----CcccccCcceehhhHhhhcCCHH----------HHhhhhcCC-----CCcEEeCCChhHHH
Q 045218           47 AVAVVDANAIIQGAH----NLTNFADKFVTVPEVLAEIRDPV----------SRNRLNFIP-----FSIDSMEPSPDSLN  107 (405)
Q Consensus        47 k~lVLDTsAFIkg~~----~L~~~a~kiYTtPeVI~EIRDk~----------SR~rLe~Lp-----~~LkIrEPs~EsIk  107 (405)
                      ..+|+|||++|.|-.    .-..+...+|.+.-|++|+....          .|+.|+.|-     +.++|.+       
T Consensus         6 ~~~vlDTSviIdGri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~-------   78 (134)
T 3ix7_A            6 GGKVLDTSVLVDGRVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE-------   78 (134)
T ss_dssp             SCEEECHHHHHHCHHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC-------
T ss_pred             CCeEcccceEEecHHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC-------
Confidence            468999999998721    11112358999999999998644          455555431     1234443       


Q ss_pred             HHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218          108 KVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       108 kV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                                |+...+.+|-+|++||.++.+....
T Consensus        79 ----------~~~~~~~vD~~ll~lA~~~~~~lvT  103 (134)
T 3ix7_A           79 ----------TTPKGESVDEKLLFLARDLEAALVT  103 (134)
T ss_dssp             ----------CCCSCSSHHHHHHHHHHHTTCEEEE
T ss_pred             ----------CCCCcccHHHHHHHHHHHhCCEEEe
Confidence                      4667899999999999999876554

>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}

Probab=95.23  E-value=0.022  Score=50.17  Aligned_cols=85  Identities=13%  Similarity=0.239  Sum_probs=51.4

Q ss_pred             eEEEEechhhhcCCCC-c--ccc-cC-cceehhhHhhhcCCH------HHHhhhhcC----------CCCcEEeC--CCh
Q 045218           47 AVAVVDANAIIQGAHN-L--TNF-AD-KFVTVPEVLAEIRDP------VSRNRLNFI----------PFSIDSME--PSP  103 (405)
Q Consensus        47 k~lVLDTsAFIkg~~~-L--~~~-a~-kiYTtPeVI~EIRDk------~SR~rLe~L----------p~~LkIrE--Ps~  103 (405)
                      ++||+|||++|.|-.. +  .++ .+ +++.+..|++|+.-.      +.|+-|+.|          ...|++..  |+.
T Consensus         4 ~~~vlDTSviIdGrI~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~   83 (142)
T 3i8o_A            4 KKVCVDTCVVIDGRITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTR   83 (142)
T ss_dssp             CEEEECHHHHHTTHHHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCH
T ss_pred             CEEEeecceEEEcHHHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEEEecccCch
Confidence            5899999999988201 0  123 23 588889999998632      333334332          11233332  222


Q ss_pred             hHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218          104 DSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       104 EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      +.++           +..-..+|.+|++||.++.+....
T Consensus        84 ~~i~-----------~~~~~~vD~~l~~lA~~~~a~lvT  111 (142)
T 3i8o_A           84 EEIF-----------LAKSGEIDAMIRKVAKETNSILLT  111 (142)
T ss_dssp             HHHH-----------SCCSSSHHHHHHHHHHHTTCEEEE
T ss_pred             hhhc-----------cccCCcHHHHHHHHHHHhCCEEEc
Confidence            2221           234468999999999999886654

>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1

Probab=92.75  E-value=0.26  Score=41.43  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=56.9

Q ss_pred             CCceEEEEechhhhcCCCC--cc----c---ccCcceehhhHhhhcCCH-------------HHHhhhhc----CCCCcE
Q 045218           44 EGIAVAVVDANAIIQGAHN--LT----N---FADKFVTVPEVLAEIRDP-------------VSRNRLNF----IPFSID   97 (405)
Q Consensus        44 ~~ik~lVLDTsAFIkg~~~--L~----~---~a~kiYTtPeVI~EIRDk-------------~SR~rLe~----Lp~~Lk   97 (405)
                      .++..+|||||+||.-...  ..    .   -...+++++-++.|+..-             ..+..+..    +. .+.
T Consensus        23 ~~~M~ivlDTsvli~~l~~~~~~~~a~~~l~~~~~~~is~~~~~Ev~~vl~r~~~~~~l~~~~~~~~l~~~~~~l~-~l~  101 (156)
T 2fe1_A           23 QGAMELVVDASAIAALYVPEERSEQAERAVSQAQELHTLDLAAYEVANDLWKHARRGLLREDEASNMLEELWEFFK-ALK  101 (156)
T ss_dssp             ---CEEEECHHHHHTTSSSCCCCHHHHHHHHHCSEEEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-TSE
T ss_pred             hccCeEEEEHHHHHHHHhCCCCcHHHHHHHhhccCeehHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-hcc
Confidence            3444689999999976211  10    0   013688999999998531             12222222    21 133


Q ss_pred             EeCCChhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218           98 SMEPSPDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus        98 IrEPs~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      +. ..++.+..+.+.+++.|    |+..|--++|+|..+......
T Consensus       102 i~-~~~~~~~~A~~l~~~~~----l~~~Dal~lA~A~~~~~~LvT  141 (156)
T 2fe1_A          102 VH-SYAEVLKDAFALALKHG----VTVYDAAYVALAEKIGGKLLT  141 (156)
T ss_dssp             EE-CGGGTHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCEEEC
T ss_pred             cc-cchHHHHHHHHHHHHhC----cCHHHHHHHHHHHHcCCCEEe
Confidence            33 22266677777888766    899999999999998876533

>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1

Probab=92.36  E-value=0.21  Score=41.72  Aligned_cols=100  Identities=9%  Similarity=0.049  Sum_probs=69.0

Q ss_pred             EEEEechhhhcCC---CC--------cc-cc---cCcceehhhHhhhcCCH------HHHhhhhcC--CCCcEEeCCChh
Q 045218           48 VAVVDANAIIQGA---HN--------LT-NF---ADKFVTVPEVLAEIRDP------VSRNRLNFI--PFSIDSMEPSPD  104 (405)
Q Consensus        48 ~lVLDTsAFIkg~---~~--------L~-~~---a~kiYTtPeVI~EIRDk------~SR~rLe~L--p~~LkIrEPs~E  104 (405)
                      +++||||++|.-.   .+        +. .+   ...+|+++-|+.|+---      ..+..+..+  ...+.|..++++
T Consensus         2 mi~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~~~~~v~~~~~~   81 (156)
T 1w8i_A            2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDE   81 (156)
T ss_dssp             EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSEEECCCHH
T ss_pred             eEEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCeEEEeCCHH
Confidence            5899999998621   11        11 22   35789999999998432      233444544  345889888988


Q ss_pred             HHHHHHHHHH-HhCCCCCCChHHHHHHHhhhhcceeecc-cccccC
Q 045218          105 SLNKVIKFAR-ATGDLQTLSDVDLKLIALTCTLETQMHG-TKHLRD  148 (405)
Q Consensus       105 sIkkV~eFAK-KTGD~~sLS~TDIkVIALAyeLe~E~~G-t~hLR~  148 (405)
                      .+....+..+ +-++ ..|+-.|.-++|+|......... ..|++.
T Consensus        82 ~~~~A~~l~~~~~~~-~~l~~~Dali~A~A~~~g~~l~T~D~dF~~  126 (156)
T 1w8i_A           82 VERKALEVFKARVYE-KGFSYTDAISEVVAEELKLKLISYDSRFSL  126 (156)
T ss_dssp             HHHHHHHHHHHTTTS-TTCCHHHHHHHHHHHHHTCEEECSCTTCSS
T ss_pred             HHHHHHHHHHHHhcc-CCCCHhHHHHHHHHHHcCCEEEEeCcccCc
Confidence            8888888877 6665 45999999999999988875443 245543

>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A

Probab=91.23  E-value=0.15  Score=44.13  Aligned_cols=93  Identities=19%  Similarity=0.236  Sum_probs=61.3

Q ss_pred             CCCceE-EEEechhhhcCCCC----cccccCcceehhhHhhhcCCHHHHh-------------hhhcCCCCcEEeCCChh
Q 045218           43 TEGIAV-AVVDANAIIQGAHN----LTNFADKFVTVPEVLAEIRDPVSRN-------------RLNFIPFSIDSMEPSPD  104 (405)
Q Consensus        43 ~~~ik~-lVLDTsAFIkg~~~----L~~~a~kiYTtPeVI~EIRDk~SR~-------------rLe~Lp~~LkIrEPs~E  104 (405)
                      ..+|.. +|||||++++-...    +.. ...++++.-|+.|+..--.|.             .|..+...+.+...+  
T Consensus        23 ~~~M~~~ivvDTSvlv~~l~~~~~~l~~-~~~~~ip~l~~~Ev~~vL~r~~r~~~l~~~~a~~~l~~ll~~l~v~~~~--   99 (158)
T 1v8p_A           23 QGAMAVEYLVDASALYALAAHYDKWIKH-REKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDP--   99 (158)
T ss_dssp             ----CCCEEECHHHHHHHTTCHHHHGGG-GGGEEECHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHTSEECCCC--
T ss_pred             cCCCcceEEeeHHHHHHHHHhhHHHHhh-cCCEEeHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCeEEeCc--
Confidence            356765 99999999976211    111 246788888999987543332             222111125666665  


Q ss_pred             HHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218          105 SLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       105 sIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      .+..+.+.+.+.|    ||--|--.||+|..+......
T Consensus       100 ~~~~A~~la~~~~----Ls~yDA~~lAlA~~~g~~L~T  133 (158)
T 1v8p_A          100 PLDEVLRVAVERG----LTFYDASYAYVAESSGLVLVT  133 (158)
T ss_dssp             CHHHHHHHHHHHT----CCHHHHHHHHHHHHTTCEEEC
T ss_pred             HHHHHHHHHHHHC----cCHHHHHHHHHHHHhCCeEEe
Confidence            3788888898877    899999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1w8ia_	155	Hypothetical protein AF1683 {Archaeoglobus fulgidu	94.53
d2fe1a1	130	Conserved hypothetical protein PAE0151 {Pyrobaculu	88.22

>d1w8ia_ c.120.1.1 (A:) Hypothetical protein AF1683 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Hypothetical protein AF1683
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.53  E-value=0.076  Score=43.38  Aligned_cols=95  Identities=11%  Similarity=0.020  Sum_probs=66.8

Q ss_pred             EEEEechhhhcCC---CCcc------------cccCcceehhhHhhhcCCHHHH------hhhhcC--CCCcEEeCCChh
Q 045218           48 VAVVDANAIIQGA---HNLT------------NFADKFVTVPEVLAEIRDPVSR------NRLNFI--PFSIDSMEPSPD  104 (405)
Q Consensus        48 ~lVLDTsAFIkg~---~~L~------------~~a~kiYTtPeVI~EIRDk~SR------~rLe~L--p~~LkIrEPs~E  104 (405)
                      .++||||+||.-.   -+..            .-...+||++-|+.|+--.-.+      ..+..+  ...++|..++++
T Consensus         2 ~~lvDT~~liA~~~~~D~~H~~a~~~~~~~~~~~~~~lvtt~~VL~E~~~ll~~~~~~a~~~l~~ll~~~~v~Vi~~~~e   81 (155)
T d1w8ia_           2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDE   81 (155)
T ss_dssp             EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSEEECCCHH
T ss_pred             eEEEEhHHHHHHHcCCchhHHHHHHHHHHHHhccCCceeecchhHHHHHHHHHhhhHHHHHHHHHHHhCCCeEEEecchH
Confidence            5799999999631   1111            1112589999999998432222      223222  345999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218          105 SLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       105 sIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      ...++.+..++...=..||-+|--++|+|-+|......
T Consensus        82 ~~~rA~eL~~~~~~d~~lsftDa~~~alA~~l~i~i~T  119 (155)
T d1w8ia_          82 VERKALEVFKARVYEKGFSYTDAISEVVAEELKLKLIS  119 (155)
T ss_dssp             HHHHHHHHHHHTTTSTTCCHHHHHHHHHHHHHTCEEEC
T ss_pred             HHHHHHHHHHhhccccCCCHHHHHHHHHHHHcCCCEEE
Confidence            99998887655433378999999999999999887654

>d2fe1a1 c.120.1.1 (A:1-130) Conserved hypothetical protein PAE0151 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: PIN domain
domain: Conserved hypothetical protein PAE0151
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.22  E-value=0.38  Score=36.02  Aligned_cols=90  Identities=18%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             EEEEechhhhcCC--CCc-------ccccCcceehhhHhhhcCCHHHHh-------------hhhc---CCCCcEEeCCC
Q 045218           48 VAVVDANAIIQGA--HNL-------TNFADKFVTVPEVLAEIRDPVSRN-------------RLNF---IPFSIDSMEPS  102 (405)
Q Consensus        48 ~lVLDTsAFIkg~--~~L-------~~~a~kiYTtPeVI~EIRDk~SR~-------------rLe~---Lp~~LkIrEPs  102 (405)
                      .+|||||++|.-.  .+.       -.....+++++-|+.|+.-.-.|.             .+..   ++..+.+ ...
T Consensus         2 ~ivlDTnvli~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   80 (130)
T d2fe1a1           2 ELVVDASAIAALYVPEERSEQAERAVSQAQELHTLDLAAYEVANDLWKHARRGLLREDEASNMLEELWEFFKALKV-HSY   80 (130)
T ss_dssp             EEEECHHHHHTTSSSCCCCHHHHHHHHHCSEEEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSEE-ECG
T ss_pred             EEEEehHHHHHHHhCCccHHHHHHHHhhcCCEEecHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhcccceee-cCc
Confidence            6799999999531  111       112357888899999994322211             1111   2233444 445


Q ss_pred             hhHHHHHHHHHHHhCCCCCCChHHHHHHHhhhhcceeecc
Q 045218          103 PDSLNKVIKFARATGDLQTLSDVDLKLIALTCTLETQMHG  142 (405)
Q Consensus       103 ~EsIkkV~eFAKKTGD~~sLS~TDIkVIALAyeLe~E~~G  142 (405)
                      ...+..+.+.+++.|    |+..|.-++|+|.........
T Consensus        81 ~~~~~~a~~l~~~~~----l~~~Da~i~A~A~~~~~~l~T  116 (130)
T d2fe1a1          81 AEVLKDAFALALKHG----VTVYDAAYVALAEKIGGKLLT  116 (130)
T ss_dssp             GGTHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCEEEC
T ss_pred             HHHHHHHHHHHHHcC----CCccHHHHHHHHHHcCCEEEE
Confidence            566777778777755    889999999999999887655