Citrus Sinensis ID: 045244

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEcccHHEEHHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHccEEccc
Coil and Loop (DISEMBL)
aevsvlsprvafldHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLkkmengaspaptqAAEVRVSVEKEQLLNV
Flexible Loop (DISEMBL)
aevsvlsprvafldhQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLkkmengaspaptqaaevrvsVEKEQLLNV
Low Complexity Region (SEG)
AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV
Disordered region (IsUnstruct)
********RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEAL***I**L**************************************
Disordered Region (DISOPRED)
****VLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQ**********************************EQLLN*
Disordered Region (DISEMBL)
AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKK******************VEKEQLLNV
Disordered Region (DISPRO)
**VSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKK***************R***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHxxxxxxxxxxxxxxxxxxxxxKMENGASPAPTQAAEVRVSVEKEQLLNV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
15230964	329	basic leucine zipper transcription facto	0.978	0.276	0.827	6e-35
297820612	329	bZIP transcription factor family protein	0.978	0.276	0.827	7e-35
449453539	326	PREDICTED: uncharacterized protein LOC10	1.0	0.285	0.808	5e-34
358343352	344	Transcription factor bZIP48 [Medicago tr	0.989	0.267	0.778	2e-33
255568343	325	Transcription factor RF2a, putative [Ric	0.978	0.28	0.821	4e-33
359806839	320	transcription factor bZIP58 [Glycine max	0.989	0.287	0.819	6e-33
356549868	311	PREDICTED: transcription factor RF2a-lik	0.978	0.292	0.815	7e-33
297827913	321	bZIP transcription factor family protein	1.0	0.289	0.755	7e-33
145652335	170	transcription factor bZIP48, partial [Gl	1.0	0.547	0.75	1e-31
18491297	311	At2g42380/MHK10.10 [Arabidopsis thaliana	0.978	0.292	0.74	1e-31

>gi|15230964|ref|NP_191371.1| basic leucine zipper transcription factor-like protein [Arabidopsis thaliana] gi|15100055|gb|AAK84223.1|AF401300_1 transcription factor bZIP61 [Arabidopsis thaliana] gi|6735324|emb|CAB68150.1| putative protein [Arabidopsis thaliana] gi|20260308|gb|AAM13052.1| pelota-like protein [Arabidopsis thaliana] gi|21592956|gb|AAM64906.1| unknown [Arabidopsis thaliana] gi|30984556|gb|AAP42741.1| At3g58120 [Arabidopsis thaliana] gi|332646223|gb|AEE79744.1| basic leucine zipper transcription factor-like protein [Arabidopsis thaliana]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 83/93 (89%), Gaps = 2/93 (2%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
            EVSVLSPRVAFLDHQRLLLNVDNSA+KQRIAALAQDKIFKDAHQEALKREI+RLRQVYH
Sbjct: 239 TEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYH 298

Query: 61  QQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV 93
           QQ+LKKMEN  S      A+++ SVEKEQLLNV
Sbjct: 299 QQSLKKMENNVSDQ--SPADIKPSVEKEQLLNV 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820612|ref|XP_002878189.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297324027|gb|EFH54448.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 83/93 (89%), Gaps = 2/93 (2%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
            EVSVLSPRVAFLDHQRLLLNVDNSA+KQRIAALAQDKIFKDAHQEALKREI+RLRQVYH
Sbjct: 239 TEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYH 298

Query: 61  QQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV 93
           QQ+LKKMEN  S      A+++ SVEKEQLLNV
Sbjct: 299 QQSLKKMENNVSDQ--SPADIKPSVEKEQLLNV 329

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453539|ref|XP_004144514.1| PREDICTED: uncharacterized protein LOC101205276 [Cucumis sativus] gi|449517287|ref|XP_004165677.1| PREDICTED: uncharacterized protein LOC101231108 [Cucumis sativus]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 82/94 (87%), Gaps = 1/94 (1%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
           AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREI+RLRQVYH
Sbjct: 222 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYH 281

Query: 61  QQNLKKMENGA-SPAPTQAAEVRVSVEKEQLLNV 93
           QQN+KKMEN + SPA T +  V  +V   +L NV
Sbjct: 282 QQNIKKMENASPSPAITPSQPVATTVPDAKLPNV 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343352|ref|XP_003635768.1| Transcription factor bZIP48 [Medicago truncatula] gi|355501703|gb|AES82906.1| Transcription factor bZIP48 [Medicago truncatula]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 78/95 (82%), Gaps = 3/95 (3%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
            EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDK+FKDAHQEALKREI+RLRQVYH
Sbjct: 228 TEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKLFKDAHQEALKREIERLRQVYH 287

Query: 61  QQNLKKMENGAS---PAPTQAAEVRVSVEKEQLLN 92
            QNLKKMEN      P+P+Q        E EQLLN
Sbjct: 288 HQNLKKMENANGSPLPSPSQKPICDSQTENEQLLN 322

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568343|ref|XP_002525146.1| Transcription factor RF2a, putative [Ricinus communis] gi|223535605|gb|EEF37273.1| Transcription factor RF2a, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 82/95 (86%), Gaps = 4/95 (4%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
           AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREI+RLRQVYH
Sbjct: 233 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYH 292

Query: 61  QQNLKKMENG-ASPAPTQAAEVRVSVEK-EQLLNV 93
           QQNLK MEN  ASP+P  A +     EK +QLL V
Sbjct: 293 QQNLKNMENATASPSP--ATDSTAPTEKGQQLLQV 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806839|ref|NP_001241568.1| transcription factor bZIP58 [Glycine max] gi|255641640|gb|ACU21092.1| unknown [Glycine max]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/94 (81%), Positives = 81/94 (86%), Gaps = 2/94 (2%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
           AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREI+RLRQVY+
Sbjct: 226 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYY 285

Query: 61  QQNLKKMENGA-SPAPTQAAEVRVSVEKE-QLLN 92
           QQ+LKKMEN A SP P+         EKE QLLN
Sbjct: 286 QQSLKKMENAAGSPLPSPKPICDAQTEKEAQLLN 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549868|ref|XP_003543312.1| PREDICTED: transcription factor RF2a-like [Glycine max]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 78/92 (84%), Gaps = 1/92 (1%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
           AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREI+RLRQVYH
Sbjct: 217 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYH 276

Query: 61  QQNLKKMENGA-SPAPTQAAEVRVSVEKEQLL 91
           QQ+LKKMEN A SP P+         EKE  L
Sbjct: 277 QQSLKKMENAAGSPLPSPKPICDAQTEKEATL 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827913|ref|XP_002881839.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297327678|gb|EFH58098.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 83/98 (84%), Gaps = 5/98 (5%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
           AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL+QDKIFKDAHQEALKREI+RLRQVY+
Sbjct: 223 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALSQDKIFKDAHQEALKREIERLRQVYN 282

Query: 61  QQNLKKMEN-----GASPAPTQAAEVRVSVEKEQLLNV 93
           QQ+LK MEN           T A +++ S+E+EQLLNV
Sbjct: 283 QQSLKTMENANHLPATGAGATSAVDIKPSIEQEQLLNV 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145652335|gb|ABP88222.1| transcription factor bZIP48, partial [Glycine max]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 82/100 (82%), Gaps = 7/100 (7%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
           AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREI+RLRQVYH
Sbjct: 71  AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYH 130

Query: 61  QQNLKKMENGASPAPTQAA-------EVRVSVEKEQLLNV 93
           QQN+KKM+N A+ +P   +             EKEQL+NV
Sbjct: 131 QQNIKKMDNNAAASPPSQSPSPSPKPRCETHTEKEQLINV 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18491297|gb|AAL69473.1| At2g42380/MHK10.10 [Arabidopsis thaliana]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 83/100 (83%), Gaps = 9/100 (9%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
           AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL+QDK+FKDAHQEALKREI+RLRQVY+
Sbjct: 213 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALSQDKLFKDAHQEALKREIERLRQVYN 272

Query: 61  QQNLKKMEN-------GASPAPTQAAEVRVSVEKEQLLNV 93
           QQ+L  +EN       GA   P  A +++ SVE EQLLNV
Sbjct: 273 QQSLTNVENANHLSATGAGATP--AVDIKSSVETEQLLNV 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2085425	329	BZIP61 [Arabidopsis thaliana (	0.967	0.273	0.836	4.6e-34
TAIR|locus:2053761	321	BZIP34 "AT2G42380" [Arabidopsi	1.0	0.289	0.755	8.8e-31
TAIR|locus:2196225	374	AT1G58110 "AT1G58110" [Arabido	0.666	0.165	0.451	2.8e-09
TAIR|locus:2175473	307	AT5G04840 "AT5G04840" [Arabido	0.548	0.166	0.470	6e-06
TAIR|locus:2008673	300	AT1G35490 "AT1G35490" [Arabido	0.612	0.19	0.421	7.3e-06
TAIR|locus:2031123	341	VIP1 "VIRE2-interacting protei	0.612	0.167	0.403	0.0004

TAIR|locus:2085425 BZIP61 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 77/92 (83%), Positives = 83/92 (90%)

Query:     2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ 61
             EVSVLSPRVAFLDHQRLLLNVDNSA+KQRIAALAQDKIFKDAHQEALKREI+RLRQVYHQ
Sbjct:   240 EVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQ 299

Query:    62 QNLKKMENGASPAPTQAAEVRVSVEKEQLLNV 93
             Q+LKKMEN  S      A+++ SVEKEQLLNV
Sbjct:   300 QSLKKMENNVSDQ--SPADIKPSVEKEQLLNV 329

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2053761 BZIP34 "AT2G42380" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 74/98 (75%), Positives = 84/98 (85%)

Query:     1 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
             AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL+QDK+FKDAHQEALKREI+RLRQVY+
Sbjct:   223 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALSQDKLFKDAHQEALKREIERLRQVYN 282

Query:    61 QQNLKKMENG----ASPA-PTQAAEVRVSVEKEQLLNV 93
             QQ+L  +EN     A+ A  T A +++ SVE EQLLNV
Sbjct:   283 QQSLTNVENANHLSATGAGATPAVDIKSSVETEQLLNV 320

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2196225 AT1G58110 "AT1G58110" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 28/62 (45%), Positives = 45/62 (72%)

Query:     1 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
             AE S +S  + FL+ + L+L+++N ALK+R+ ++AQ+K+ K   QE L++EI RLR +Y 
Sbjct:   266 AEGSKVSAELDFLNQRNLILSMENKALKKRLESIAQEKLIKQLEQEVLEKEIGRLRALYQ 325

Query:    61 QQ 62
             QQ
Sbjct:   326 QQ 327

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2175473 AT5G04840 "AT5G04840" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query:     6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 56
             LS RVA L   R  L+++NS LKQ++A L QDK+ ++   + LK+E QRL+
Sbjct:   210 LSVRVASLLQTRATLSLENSQLKQQMAILKQDKLIREGEYQLLKKEAQRLK 260

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2008673 AT1G35490 "AT1G35490" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query:     6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQ 62
             +S  + +LD Q L+L+++N ALKQR+ +LA+ +  K   Q+ L+REI  L+   HQQ
Sbjct:   208 MSSAIHYLDQQLLMLSMENRALKQRMDSLAEIQKLKHVEQQLLEREIGNLQFRRHQQ 264

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2031123 VIP1 "VIRE2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00040, P = 0.00040
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query:     2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQV 58
             E + LS +V  L      LN +N  LK R+ AL Q    +DA  EAL+ E+ RL+ V
Sbjct:   232 EATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVV 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.128   0.332    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  10 22  0.48    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  511 (54 KB)
  Total size of DFA:  112 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.40u 0.07s 19.47t   Elapsed:  00:00:02
  Total cpu time:  19.40u 0.07s 19.47t   Elapsed:  00:00:02
  Start:  Sat May 11 07:44:05 2013   End:  Sat May 11 07:44:07 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045596 "negative regulation of cell differentiation" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IDA

GO:0051170 "nuclear import" evidence=IDA

GO:0051019 "mitogen-activated protein kinase binding" evidence=IPI

GO:0008272 "sulfate transport" evidence=IMP

GO:0009970 "cellular response to sulfate starvation" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	BZIP61	BZIP61; DNA binding / transcription activator/ transcription factor; Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. (329 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AtbZIP75	AtbZIP75 (Arabidopsis thaliana basic leucine-zipper 75); DNA binding / transcription factor; Ar [...] (137 aa)							•		0.877
	AtbZIP43	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43); DNA binding / transcription factor; Ar [...] (165 aa)					•				0.847
	VIP1	VIP1 (VIRE2-INTERACTING PROTEIN 1); protein binding / transcription factor; Encodes a VirE2-int [...] (341 aa)					•			•	0.847
	AT1G22330	RNA binding / nucleic acid binding / nucleotide binding; RNA binding / nucleic acid binding / n [...] (291 aa)				•					0.833
	AT3G07010	pectate lyase family protein; pectate lyase family protein; FUNCTIONS IN- lyase activity, pecta [...] (416 aa)				•					0.831
	AT1G76510	ARID/BRIGHT DNA-binding domain-containing protein; ARID/BRIGHT DNA-binding domain-containing pr [...] (434 aa)							•		0.821
	AT1G75710	zinc finger (C2H2 type) family protein; zinc finger (C2H2 type) family protein; FUNCTIONS IN- t [...] (462 aa)							•		0.821
	RHC1A	RHC1A; protein binding / zinc ion binding; Encodes a putative RING-H2 finger protein RHC1a. (328 aa)							•		0.790
	AT4G12080	DNA-binding family protein; DNA-binding family protein; FUNCTIONS IN- DNA binding; LOCATED IN- [...] (356 aa)							•		0.784
	AT3G17100	transcription factor; transcription factor; FUNCTIONS IN- transcription factor activity; INVOLV [...] (230 aa)				•			•		0.685

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.34
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.63
PF11629	49	Mst1_SARAH: C terminal SARAH domain of Mst1; Inter	89.43
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	88.68
PRK00888	105	ftsB cell division protein FtsB; Reviewed	88.5
PRK13169	110	DNA replication intiation control protein YabA; Re	88.0
KOG4370	514	consensus Ral-GTPase effector RLIP76 [Signal trans	86.85
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	86.61
PRK10884	206	SH3 domain-containing protein; Provisional	85.41
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	83.26
COG4467	114	Regulator of replication initiation timing [Replic	83.06
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	82.24
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	81.71

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.34  E-value=0.15  Score=33.19  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             CcccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244            1 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQV   58 (93)
Q Consensus         1 tE~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~l   58 (93)
                      +|+++|-.++..+.++...--.+|+.|..-=.+.......+...+..|+.|++.|+.-
T Consensus         5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888899999999999999999999988888888889999999999999999864

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.63  E-value=0.67  Score=30.39  Aligned_cols=51  Identities=25%  Similarity=0.325  Sum_probs=39.6

Q ss_pred             hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244            6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN   63 (93)
Q Consensus         6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq   63 (93)
                      |-.+|.-+--.-..|-+||..||.+-.++.       -.++.|+.|.++||.-+...+
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~   59 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQ   59 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            445555555666788999999999988888       678999999999997665543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name

Probab=89.43  E-value=1.3  Score=28.01  Aligned_cols=31  Identities=35%  Similarity=0.590  Sum_probs=25.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           24 NSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNL   64 (93)
Q Consensus        24 N~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~   64 (93)
                      -.+|.+||++|-          -.+++||+.||..|++..+
T Consensus        10 ~~eL~~rl~~LD----------~~ME~Eieelr~RY~~KRq   40 (49)
T PF11629_consen   10 YEELQQRLASLD----------PEMEQEIEELRQRYQAKRQ   40 (49)
T ss_dssp             HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhhc
Confidence            357888888875          4689999999999998765

In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=88.68  E-value=0.85  Score=35.80  Aligned_cols=41  Identities=27%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           19 LLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQ   62 (93)
Q Consensus        19 ~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQ   62 (93)
                      -|--||..||.+++.+.++...   ..+.+++|-+|||.+.+=.
T Consensus        70 ~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        70 NLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Confidence            4678999999999988444332   2345999999999987654

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=88.50  E-value=1.5  Score=30.18  Aligned_cols=42  Identities=21%  Similarity=0.222  Sum_probs=34.9

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 045244           22 VDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ--VYHQQN   63 (93)
Q Consensus        22 ~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~--ly~QQq   63 (93)
                      .....++++++.+.++---..+.|+.|++||.+|+.  -|-...
T Consensus        27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~   70 (105)
T PRK00888         27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER   70 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence            356789999999999988889999999999999987  344433

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=88.00  E-value=0.36  Score=34.12  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=17.3

Q ss_pred             ccchhhHHHHHhhhhhhhccccHHHHHHHHHH
Q 045244            3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL   34 (93)
Q Consensus         3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL   34 (93)
                      ...|...|..+--.|..|.+||..||.||..+
T Consensus        24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169         24 LGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555555555555544

>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]

Probab=86.85  E-value=1.1  Score=39.16  Aligned_cols=44  Identities=23%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             HHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244            9 RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKK   66 (93)
Q Consensus         9 qv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~~~   66 (93)
                      -+.+|++++-.|--.|++|+||++.              ++.+|-+||++|.++|..+
T Consensus       414 ~le~Lq~Q~eeL~e~~n~l~qrI~e--------------er~~v~~lkql~~~~q~e~  457 (514)
T KOG4370|consen  414 ILELLQRQNEELEEKVNHLNQRIAE--------------ERERVIELKQLVNLLQEEN  457 (514)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhcc
Confidence            4678999999999999999999975              4678999999999987543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=86.61  E-value=0.41  Score=33.39  Aligned_cols=51  Identities=24%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244            6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN   63 (93)
Q Consensus         6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq   63 (93)
                      |-.+|.-+..+-..|.-+=.+||..+..|-.       +|..|+-|-+.||..-.+-.
T Consensus         6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E-------EN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    6 LFDRLDQLEQQLGQLLEELEELKKQLQELLE-------ENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence            3445555555555555555666666665543       35666666666666655543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.41  E-value=2.6  Score=32.15  Aligned_cols=41  Identities=17%  Similarity=0.110  Sum_probs=20.3

Q ss_pred             HhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           13 LDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQ   53 (93)
Q Consensus        13 L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEie   53 (93)
                      .+..-.-|.-||..|+..++.+..+...-.++++.+++.+.
T Consensus       130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333345555555555555555554444445555544443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=83.26  E-value=5.6  Score=32.67  Aligned_cols=61  Identities=28%  Similarity=0.480  Sum_probs=49.1

Q ss_pred             cccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhC
Q 045244            2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVY---------HQQNLKKMEN   69 (93)
Q Consensus         2 E~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly---------~QQq~~~~~~   69 (93)
                      |++.|-++|.-+++.--.+++||-.|.+.|.+.      |++++. |..|+.-|+..|         -|.+.|+..+
T Consensus       235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s------ke~Q~~-L~aEL~elqdkY~E~~~mL~EaQEElk~lR~  304 (306)
T PF04849_consen  235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQAS------KESQRQ-LQAELQELQDKYAECMAMLHEAQEELKTLRK  304 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            678899999999999999999999999999875      455544 788888888888         4566665443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=83.06  E-value=0.66  Score=33.67  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=24.3

Q ss_pred             cccchhhHHHHHhhhhhhhccccHHHHHHHHH
Q 045244            2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAA   33 (93)
Q Consensus         2 E~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~a   33 (93)
                      |.+.|-..+.++--.|..|.+||..||-||.-
T Consensus        23 el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467          23 ELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45566667777777888888888888888876

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=82.24  E-value=5.9  Score=27.19  Aligned_cols=48  Identities=23%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             HHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244            9 RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR   56 (93)
Q Consensus         9 qv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk   56 (93)
                      -|.||.+-.-.|.-.+..|+.+++++.++.---......++.|+..||
T Consensus        67 ~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk  114 (118)
T PF13815_consen   67 SIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK  114 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888888888888888888888877665544445555555665554

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=81.71  E-value=6.5  Score=34.12  Aligned_cols=55  Identities=31%  Similarity=0.369  Sum_probs=35.0

Q ss_pred             chhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 045244            5 VLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDA----------HQEALKREIQRLRQVYHQ   61 (93)
Q Consensus         5 ~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda----------~~EaLkkEieRLk~ly~Q   61 (93)
                      .+-.++.-+..+|-.|--||..||+|..++.+.  |..+          +.+.|+.|+.+++.+..+
T Consensus        70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~--i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~  134 (472)
T TIGR03752        70 ELRKRLAKLISENEALKAENERLQKREQSIDQQ--IQQAVQSETQELTKEIEQLKSERQQLQGLIDQ  134 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777778888888888888877776553  3332          345566666666555544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 6e-05
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 7/31 (22%)

Query: 61 QQNLKKMENGA---SP--APTQAAEVRVSVE 86
          +Q LKK++      +   AP  A  ++ ++E
Sbjct: 19 KQALKKLQASLKLYADDSAPALA--IKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.77
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	88.53
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	88.18
2j5u_A	255	MREC protein; bacterial cell shape determining pro	86.27
2jo8_A	51	Serine/threonine-protein kinase 4; C-terminal doma	85.06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	84.65
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	84.21
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	81.65
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	81.52
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.7

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.77  E-value=0.87  Score=30.08  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=41.1

Q ss_pred             hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244            6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH   60 (93)
Q Consensus         6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~   60 (93)
                      |-++|.-.-.--..|-||..+||.+-.+|+++.---....+.|.+|+++||.-..
T Consensus        11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~   65 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344444444556788999999999999999988877777778888887776544

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=88.53  E-value=0.7  Score=30.27  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=38.3

Q ss_pred             HHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           11 AFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH   60 (93)
Q Consensus        11 ~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~   60 (93)
                      ..+.+.-=.+-++|..|+.|+..++++--=....++.++.|+.++-....
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld   58 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD   58 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444567889999999999999877677779999999999866544

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=88.18  E-value=0.87  Score=28.02  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           29 QRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ   61 (93)
Q Consensus        29 qRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q   61 (93)
                      .++..|+...---...|..|+.||.+||..++|
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~   62 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVGE   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456666666655567889999999999987764

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=86.27  E-value=0.94  Score=33.75  Aligned_cols=38  Identities=29%  Similarity=0.372  Sum_probs=29.7

Q ss_pred             hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           19 LLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH   60 (93)
Q Consensus        19 ~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~   60 (93)
                      -|.-||..||.+++.|+++.    ...+.|+.|-+|||.+..
T Consensus        23 ~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~   60 (255)
T 2j5u_A           23 NTYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLD   60 (255)
T ss_dssp             ---CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence            45689999999999988754    467788999999998865

>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}

Probab=85.06  E-value=2.1  Score=26.19  Aligned_cols=32  Identities=28%  Similarity=0.524  Sum_probs=25.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           23 DNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNL   64 (93)
Q Consensus        23 EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~   64 (93)
                      .-.+|.+|+++|          .-++++||+-||..|+.+.+
T Consensus        11 s~eEL~~rl~~L----------d~~Me~Ei~elr~RY~~KRq   42 (51)
T 2jo8_A           11 TVEDLQKRLLAL----------DPMMEQEIEEIRQKYQSKRQ   42 (51)
T ss_dssp             CHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHc----------cHHHHHHHHHHHHHHHHhHh
Confidence            345788888554          56799999999999999866

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=84.65  E-value=2.2  Score=28.03  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           25 SALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ   61 (93)
Q Consensus        25 ~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q   61 (93)
                      .++.++...|+++-.-=.+.-+.|++|+..||.++-|
T Consensus        39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555566788888888888775

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=84.21  E-value=2.2  Score=27.52  Aligned_cols=43  Identities=14%  Similarity=0.298  Sum_probs=34.5

Q ss_pred             hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           18 LLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH   60 (93)
Q Consensus        18 ~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~   60 (93)
                      =.+-++|..|+.|+..++++--=-...++.++.|+.++-....
T Consensus        10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld   52 (72)
T 3cve_A           10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3466789999999999998866666669999999998866543

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=81.65  E-value=5.2  Score=24.08  Aligned_cols=30  Identities=20%  Similarity=0.164  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           30 RIAALAQDKIFKDAHQEALKREIQRLRQVY   59 (93)
Q Consensus        30 RL~aL~Qe~~lKda~~EaLkkEieRLk~ly   59 (93)
                      ++..|+++.--=...|+.|+.||..|+.-+
T Consensus        24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~   53 (63)
T 2wt7_A           24 LTDTLQAETDQLEDEKSALQTEIANLLKEK   53 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555544555555555555554433

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=81.52  E-value=6.1  Score=25.59  Aligned_cols=55  Identities=11%  Similarity=0.050  Sum_probs=42.4

Q ss_pred             cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244            4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQV   58 (93)
Q Consensus         4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~l   58 (93)
                      +++..+|+-+.+.....+--+-.|-.+|+.|.++..-=.+..|.+..+++.|+..
T Consensus         2 ~s~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r   56 (83)
T 2xdj_A            2 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER   56 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4567788888775444444556788899999999888889999999999888653

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.70  E-value=6.1  Score=23.46  Aligned_cols=33  Identities=18%  Similarity=0.156  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244           28 KQRIAALAQDKIFKDAHQEALKREIQRLRQVYH   60 (93)
Q Consensus        28 KqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~   60 (93)
                      |+++..|++..-.=...|..|+.||..|+.-..
T Consensus        21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~   53 (61)
T 1t2k_D           21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777766667777777777777765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00