Citrus Sinensis ID: 045359

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
LHRTTSSPPPLISFSRASKFPIRATSSSSDHEEIRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAEKEKFEEEEQQKEVVKVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKGIIQTIPRKNPALGLKVSAYY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHEEEccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccEEEEEEEEEEccccEEEEEcccccccccEEccccccHHHHHHHHHHHHcccccccccccEcccccHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccEEEEccccccccccEEEEcc
Coil and Loop (DISEMBL)
lhrttssppplisfsraskfpiratssssdhEEIRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALEnrnlsdgasvsVSDTISNIAGLLQMLKEKNMIAERATVAEKEKFEEEEQQKEVVKVLEGEKKKRKALrvgsegedVKAMQEELLKlgffsseedmeyssfstgTERAVKTWQAAkgvtedgiMTSELLERLYMEHRvedtdtnmnadqkgiiqtiprknpalglkvsayy
Flexible Loop (DISEMBL)
lhrttssppplisfsraskfpiratssssdheeirWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALenrnlsdgasvsvSDTISNIAGLLQMLKEKNMIAERATVAekekfeeeeqqkevvkvlegekkkrkalrvgsegedvkaMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQaakgvtedgimTSELLERLYMEHRvedtdtnmnadqkgiiqtiprknpalglkvsayy
Low Complexity Region (SEG)
LHRTTSSPPPLISFSRASKFPIRATSSSSDHeeirwlreeqrwlreeqrwlreeqrwireresllreiselKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAekekfeeeeqqkevvkvlegekkkrkALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKGIIQTIPRKNPALGLKVSAYY
Disordered region (IsUnstruct)
*********************************IRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALE***********VSDTISNIAGLLQMLK**********************************************************LGF******************AVKTWQAAKGVTEDGIMTSELLERLYMEH***********************************
Disordered Region (DISOPRED)
***********ISFS*********************LREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKA*******************************************************************ALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERL************************************AY*
Disordered Region (DISEMBL)
*********PLISFSRASKFP************IRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAE************VVKVLEG****************VKAMQEELLKLGFFSSEE*************AVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKGIIQTIPRKNPALGLKVSAYY
Disordered Region (DISPRO)
*****SSPPPLISFSRASK***********HEEIRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALEN******ASVSVSDTISNIAGLLQMLKEKNMIAERATVAEKEKFEEEEQQKEVVKVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRV***********KGIIQTIPRKNPALGLKVSAYY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LHRTTSSPPPLISFSRASKFPIRATSSSSDHEEIRWLREEQRWLREEQRWLRExxxxxxxxxxxxxxxxxxxxxxxxxxxxNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAEKEKFEEEEQQKEVVKVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKGIIQTIPRKNPALGLKVSAYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
4455296	432	hypothetical protein [Arabidopsis thalia	0.915	0.527	0.541	3e-58
30682566	387	protein plastid transcriptionally active	0.903	0.581	0.539	3e-58
297804958	394	predicted protein [Arabidopsis lyrata su	0.851	0.538	0.563	1e-56
356574718	380	PREDICTED: uncharacterized protein LOC10	0.915	0.6	0.541	3e-56
255554154	386	conserved hypothetical protein [Ricinus	0.955	0.616	0.509	5e-55
225433438	372	PREDICTED: uncharacterized protein LOC10	0.867	0.580	0.556	3e-53
449432436	392	PREDICTED: uncharacterized protein LOC10	0.811	0.515	0.593	7e-53
449487526	392	PREDICTED: uncharacterized LOC101215886	0.811	0.515	0.593	8e-53
356533836	385	PREDICTED: uncharacterized protein LOC10	0.787	0.509	0.559	8e-52
224053424	395	predicted protein [Populus trichocarpa]	0.915	0.577	0.544	5e-49

>gi|4455296|emb|CAB36831.1| hypothetical protein [Arabidopsis thaliana] gi|7268071|emb|CAB78409.1| hypothetical protein [Arabidopsis thaliana]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/253 (54%), Positives = 175/253 (69%), Gaps = 25/253 (9%)

Query: 1   LHRTTSSPP----PLISFSRASKFPIRATSSSSDHEEIRWLREEQRWLREEQRWLREEQR 56
           L  TT S P    PL  FS  S   +  ++ + D EE+RWLREEQRW+REEQRW+REEQR
Sbjct: 17  LTSTTRSLPFQCSPLF-FSIPSSI-VCFSTQNPDREEVRWLREEQRWIREEQRWIREEQR 74

Query: 57  WIRERESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERAT 116
           WIRERESLL+EIS+L+L+I++LE+RN   G S+   DTISNIA LLQ+LKEKN I+E   
Sbjct: 75  WIRERESLLQEISDLQLRIQSLESRNSQLGNSIP--DTISNIAALLQVLKEKNRISESGL 132

Query: 117 VAEKEKFEEEEQQ---------------KEVVKVLEGEKK-KRKALRVGSEGEDVKAMQE 160
            A     E   +Q               +E V+V E  KK KR+ L+VGSEG+DV+A+QE
Sbjct: 133 SATPMVLESTREQIVEEVEEEEKRVIIAEEKVRVSEPVKKIKRRILKVGSEGDDVQALQE 192

Query: 161 ELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTD 220
            LLKLGF+S EEDME+SSFS+GT  AVKTWQA+ GV EDG+MT+ELL+RL+M+  VE TD
Sbjct: 193 ALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGVMTAELLQRLFMDEDVE-TD 251

Query: 221 TNMNADQKGIIQT 233
            +  +  K  ++T
Sbjct: 252 KDEASTMKKEVKT 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682566|ref|NP_193103.2| protein plastid transcriptionally active 5 [Arabidopsis thaliana] gi|119360137|gb|ABL66797.1| At4g13670 [Arabidopsis thaliana] gi|332657911|gb|AEE83311.1| protein plastid transcriptionally active 5 [Arabidopsis thaliana]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/252 (53%), Positives = 173/252 (68%), Gaps = 27/252 (10%)

Query: 1   LHRTTSSPP----PLISFSRASKFPIRATSSSSDHEEIRWLREEQRWLREEQRWLREEQR 56
           L  TT S P    PL  FS  S   +  ++ + D EE+RWLREEQRW+REEQRW+REEQR
Sbjct: 17  LTSTTRSLPFQCSPLF-FSIPSSI-VCFSTQNPDREEVRWLREEQRWIREEQRWIREEQR 74

Query: 57  WIRERESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERAT 116
           WIRERESLL+EIS+L+L+I++LE+RN   G S+   DTISNIA LLQ+LKEKN I+E   
Sbjct: 75  WIRERESLLQEISDLQLRIQSLESRNSQLGNSIP--DTISNIAALLQVLKEKNRISESGL 132

Query: 117 VAEKEKFEEEEQQ---------------KEVVKVLEGEKK-KRKALRVGSEGEDVKAMQE 160
            A     E   +Q               +E V+V E  KK KR+ L+VGSEG+DV+A+QE
Sbjct: 133 SATPMVLESTREQIVEEVEEEEKRVIIAEEKVRVSEPVKKIKRRILKVGSEGDDVQALQE 192

Query: 161 ELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVE--- 217
            LLKLGF+S EEDME+SSFS+GT  AVKTWQA+ GV EDG+MT+ELL+RL+M+  VE   
Sbjct: 193 ALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGVMTAELLQRLFMDEDVETDK 252

Query: 218 DTDTNMNADQKG 229
           D  + M  ++ G
Sbjct: 253 DEASTMKKEEAG 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804958|ref|XP_002870363.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316199|gb|EFH46622.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/245 (56%), Positives = 166/245 (67%), Gaps = 33/245 (13%)

Query: 3   RTTSSPPPLISFSRASK--FPIRAT--------SSSSDHEEIRWLREEQRWLREEQRWLR 52
           R+ SSP   + F R S   FP+ ++         S  D EE+RWLREEQRW+REEQRWLR
Sbjct: 15  RSRSSPTRSLPF-RCSPLFFPLPSSIVCFSTQNPSGYDREEVRWLREEQRWIREEQRWLR 73

Query: 53  EEQRWIRERESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIA 112
           EEQRWIRERESLL+EIS L+L+I+ALE+RN   G SV   DTISNIA LLQ LKEKN I+
Sbjct: 74  EEQRWIRERESLLQEISNLQLKIQALESRNSQLGTSVP--DTISNIAALLQGLKEKNRIS 131

Query: 113 ERATVAEKEKFEEEEQQ------------KEVV----KVLEGEK----KKRKALRVGSEG 152
           E    A     E   +Q            K VV    KV+  E     KKR+ L+VGSEG
Sbjct: 132 ESGLSATPMVLESTREQIVEEVVEVEEEEKRVVIAEEKVMVSEPVKKKKKRRTLKVGSEG 191

Query: 153 EDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYM 212
           +DV+A+QE LLKLGF+S EEDME+SSFS+GT  AVKTWQA+ GV EDGIMT+ELL+RL+M
Sbjct: 192 DDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGIMTAELLQRLFM 251

Query: 213 EHRVE 217
           +  VE
Sbjct: 252 DEDVE 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574718|ref|XP_003555492.1| PREDICTED: uncharacterized protein LOC100808436 [Glycine max]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/242 (54%), Positives = 165/242 (68%), Gaps = 14/242 (5%)

Query: 1   LHRTTSSPPP-LISFSRASKFPIRATSSSSDHEEIRWLREEQRWLREEQRWLREEQRWIR 59
           L +T   P P L+S+       +R   S SDHEE RWLREEQRWLR+E RWLREEQRW R
Sbjct: 16  LTKTLPLPKPYLLSYKFKFNTLVRR-CSLSDHEEQRWLREEQRWLRDEHRWLREEQRWAR 74

Query: 60  ERESLLREISELKLQIKALENRNLSDGAS--VSVSDTISNIAGLLQMLKEKNMIAERATV 117
           ER+ LLREI++LKLQI+ALE R L+   S   S+SD ++N+  LLQ+LK+KN++ E  + 
Sbjct: 75  ERDQLLREIADLKLQIQALERRLLTRDLSSPASISDAVANVTLLLQVLKDKNLVLESGSS 134

Query: 118 AEKEKFEEEEQ--------QKEVVKVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFS 169
                 EE +Q        ++ VV       +KR +LR+GSEGE+V+ MQE LLKLGF+S
Sbjct: 135 LRNT--EEVKQLEEVVEHVKEVVVVEESARVEKRISLRIGSEGEEVRQMQEALLKLGFYS 192

Query: 170 SEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKG 229
            EEDMEYSSFS+GTERAVKTWQAA G  EDGIMT+ELLERLY+E R +DT +     Q  
Sbjct: 193 GEEDMEYSSFSSGTERAVKTWQAALGAPEDGIMTAELLERLYLEIRNKDTGSATQDKQST 252

Query: 230 II 231
            +
Sbjct: 253 TV 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554154|ref|XP_002518117.1| conserved hypothetical protein [Ricinus communis] gi|223542713|gb|EEF44250.1| conserved hypothetical protein [Ricinus communis]

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 175/265 (66%), Gaps = 27/265 (10%)

Query: 7   SPPPL------------ISFSRA-----SKFPIRATSSSSDHEEIRWLREEQRWLREEQR 49
           +PPP+            +SFS++     S  P   T S SD ++  WLREEQRWLREEQR
Sbjct: 10  NPPPVSLRRYKHYLPFSLSFSKSHLCFSSSLP--NTPSPSDGKDFLWLREEQRWLREEQR 67

Query: 50  WLREEQRWIRERESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKN 109
           WLREEQRW+RERESLL EI  LKLQIKALE R +S      V + I+++  LLQ+L EKN
Sbjct: 68  WLREEQRWLRERESLLHEIQSLKLQIKALEQR-ISVQEVDLVPENIASVRALLQVLNEKN 126

Query: 110 MIAERATVAEKEK-------FEEEEQQKEVVKVLEGEKKKRKALRVGSEGEDVKAMQEEL 162
            IAE  + +            E+ E+ KEV+ VL+ E+K+R  LR GSEG++V+ MQE L
Sbjct: 127 RIAESGSTSSSNPDPNPIAVEEKVEEVKEVIGVLKKEEKRRITLRKGSEGDEVREMQEAL 186

Query: 163 LKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTN 222
           L LGF+S EEDME+SSFS+GTERAVKTWQA+ G  EDGIMT+ELLERLY+  + + T + 
Sbjct: 187 LNLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTAELLERLYVGQQNKVTGST 246

Query: 223 MNADQKGIIQTIPRKNPALGLKVSA 247
           ++ DQK    T+ +K  A G  V++
Sbjct: 247 ISIDQKESSLTVSQKESANGAAVAS 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433438|ref|XP_002285669.1| PREDICTED: uncharacterized protein LOC100259626 [Vitis vinifera]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/232 (55%), Positives = 161/232 (69%), Gaps = 16/232 (6%)

Query: 2   HRTTSSPPPLISFSRASKFPIRATSSSSD--HEEIRWLREEQRWLREEQRWLREEQRWIR 59
           HR  +  P  ++ +   KF I A+SSSS+   EE RWLREEQRWLREEQRWLREE RW  
Sbjct: 18  HRPRTRLPFTLNLTPTPKFHISASSSSSNWEREEARWLREEQRWLREEQRWLREESRWTT 77

Query: 60  ERESLLREISELKLQIKALENRNLSDGASVSVSDTISNIAGLLQMLK---EKNMIAERAT 116
           ER+SLLREISELK +I+ LE+++       SVS +I +IA LLQ+ K   E   IAE  +
Sbjct: 78  ERQSLLREISELKFRIQQLEHQS-------SVSASIPDIAALLQLPKDSAEVARIAESGS 130

Query: 117 VAEKEKFEEEEQQKEVVKVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEY 176
            A     E +E ++E V    G++KKRK LRVGSEGE+V+AMQE L  LGF+S EED+E+
Sbjct: 131 SALPMVLESKEVKEEKV----GDQKKRKTLRVGSEGEEVRAMQEALQNLGFYSGEEDVEF 186

Query: 177 SSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQK 228
           SSFS+GTERAVKTWQA+ G  E+GIMT+ELLERL+ME  +E      N D K
Sbjct: 187 SSFSSGTERAVKTWQASLGAPENGIMTAELLERLFMEQHIEAAGLKRNIDPK 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432436|ref|XP_004134005.1| PREDICTED: uncharacterized protein LOC101215886 [Cucumis sativus]

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 130/219 (59%), Positives = 163/219 (74%), Gaps = 17/219 (7%)

Query: 27  SSSDHEEIRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALENRNLSDG 86
           SS+D EE+RW+REEQRW REE+RW+REEQRW RER+SLL+EI+ELKLQI+ALE RN   G
Sbjct: 48  SSNDREELRWIREEQRWFREEERWIREEQRWARERQSLLQEIAELKLQIQALERRNSVQG 107

Query: 87  ASVSVSDTISNIAGLLQMLKEKNMIAE------RATVAEKEKFEEEEQQK-----EVVKV 135
            ++SVS+TI+NIAGLLQ+LKEKN+IAE      R  + E  + E+ E +K     EVVK 
Sbjct: 108 GTISVSETIANIAGLLQVLKEKNLIAESGPTVSRILLDESSREEDVEIEKKTIVEEVVKF 167

Query: 136 LEGE------KKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKT 189
            E        KK+RK+LR GSEG +V AMQE L++LGF+S EEDME+SSFS+GTERAVKT
Sbjct: 168 SEESKAEKEVKKERKSLRTGSEGAEVLAMQEALMRLGFYSGEEDMEFSSFSSGTERAVKT 227

Query: 190 WQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQK 228
           WQAA G  EDGIMT+ELL+ L+ E   E   ++   D+K
Sbjct: 228 WQAASGFREDGIMTTELLDILFKEEVTESVGSDAKTDEK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487526|ref|XP_004157670.1| PREDICTED: uncharacterized LOC101215886 [Cucumis sativus]

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 130/219 (59%), Positives = 163/219 (74%), Gaps = 17/219 (7%)

Query: 27  SSSDHEEIRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALENRNLSDG 86
           SS+D EE+RW+REEQRW REE+RW+REEQRW RER+SLL+EI+ELKLQI+ALE RN   G
Sbjct: 48  SSNDREELRWIREEQRWFREEERWIREEQRWARERQSLLQEIAELKLQIQALERRNSVQG 107

Query: 87  ASVSVSDTISNIAGLLQMLKEKNMIAE------RATVAEKEKFEEEEQQK-----EVVKV 135
            ++SVS+TI+NIAGLLQ+LKEKN+IAE      R  + E  + E+ E +K     EVVK 
Sbjct: 108 GTISVSETIANIAGLLQVLKEKNLIAESGPTVSRILLDESSREEDVEIEKKTIVEEVVKF 167

Query: 136 LEGE------KKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKT 189
            E        KK+RK+LR GSEG +V AMQE L++LGF+S EEDME+SSFS+GTERAVKT
Sbjct: 168 SEESKAEKEVKKERKSLRTGSEGAEVLAMQEALMRLGFYSGEEDMEFSSFSSGTERAVKT 227

Query: 190 WQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQK 228
           WQAA G  EDGIMT+ELL+ L+ E   E   ++   D+K
Sbjct: 228 WQAASGFREDGIMTTELLDILFKEEVTESVGSDAKTDEK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533836|ref|XP_003535464.1| PREDICTED: uncharacterized protein LOC100810184 [Glycine max]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/209 (55%), Positives = 152/209 (72%), Gaps = 13/209 (6%)

Query: 26  SSSSDHEEIRWLREEQRWLREEQRWLREEQRWIRERESLLREISELKLQIKALENR-NLS 84
            S SD EE RWLREEQRWLR+E+RWLREEQRW RER+ LLREI++L LQI+ALE R ++ 
Sbjct: 41  CSLSDREEQRWLREEQRWLRDERRWLREEQRWARERDQLLREIADLNLQIQALERRLSMR 100

Query: 85  DGAS-VSVSDTISNIAGLLQMLKEKNMIAERAT-----------VAEKEKFEEEEQQKEV 132
           D +S  SVSD ++N+  LL++LK+KN++ E  +             ++ +   E  ++ V
Sbjct: 101 DLSSPASVSDAVANVTLLLKVLKDKNLVLESVSSLRNTEAEEEEEKKQFEEVVEHVKEVV 160

Query: 133 VKVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQA 192
           +       +KR +LR+GSEGE+V+ MQE LLKLGF+S EEDMEYSSFS+GTERAVKTWQA
Sbjct: 161 MVEESARVEKRISLRIGSEGEEVRQMQEALLKLGFYSGEEDMEYSSFSSGTERAVKTWQA 220

Query: 193 AKGVTEDGIMTSELLERLYMEHRVEDTDT 221
           A G  EDGIMT+ELLERLY+E R + T +
Sbjct: 221 ALGAPEDGIMTAELLERLYLEIRNKGTGS 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053424|ref|XP_002297812.1| predicted protein [Populus trichocarpa] gi|222845070|gb|EEE82617.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/257 (54%), Positives = 176/257 (68%), Gaps = 29/257 (11%)

Query: 1   LHRTTSSPPPLISFSRASKFPIRATSSSSDHEEIRWLREEQRWLREEQRWLREEQRWIRE 60
           L R+T S P  I FS           S+ D EE RWLREEQRWLREE+RWLREE+RW  +
Sbjct: 43  LSRSTLSKPHYICFS-----------SNPDREESRWLREEQRWLREEERWLREEKRWSCD 91

Query: 61  RESLLREISELKLQIKALENRNLSDGASVSV----SDTISNIAGLLQMLKEKN---MIAE 113
           RESLL +I  LKLQI+ALENR       +SV     DT++ +  LLQ+LK+KN   +IAE
Sbjct: 92  RESLLAQIQSLKLQIEALENR-------ISVLQGGEDTVAKVGLLLQVLKDKNNNNLIAE 144

Query: 114 RATVAEKEKFEEE--EQQKEVV-KVLEGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSS 170
             + A     EE   E+QKEV+ +VLE EKK+RK LR GSEGE VK MQ+ L KLGF+S 
Sbjct: 145 SGSSARPLVLEENVVEEQKEVIDRVLE-EKKERKTLRKGSEGEQVKEMQDALQKLGFYSG 203

Query: 171 EEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQKGI 230
           EEDMEYSSFS+GTERAV+TWQA+ G +EDGIMT+ELL+RLYME  ++    +++  QKG 
Sbjct: 204 EEDMEYSSFSSGTERAVRTWQASLGASEDGIMTTELLKRLYMEQHIDARMPSISETQKGS 263

Query: 231 IQTIPRKNPALGLKVSA 247
            QT+P +  A G  V++
Sbjct: 264 AQTVPAEEGADGAAVTS 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2119475	387	PTAC5 "plastid transcriptional	0.618	0.397	0.462	1.9e-28

TAIR|locus:2119475 PTAC5 "plastid transcriptionally active 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 80/173 (46%), Positives = 103/173 (59%)

Query:    72 KLQIKALENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAXXXXXXXXXXXXX 131
             +L+I++LE+RN   G S+   DTISNIA LLQ+LKEKN I+E    A             
Sbjct:    90 QLRIQSLESRNSQLGNSIP--DTISNIAALLQVLKEKNRISESGLSATPMVLESTREQIV 147

Query:   132 XXXXXXXXXXXXXA----------------LRVGSEGEDVKAMQEELLKLGFFSSEEDME 175
                                           L+VGSEG+DV+A+QE LLKLGF+S EEDME
Sbjct:   148 EEVEEEEKRVIIAEEKVRVSEPVKKIKRRILKVGSEGDDVQALQEALLKLGFYSGEEDME 207

Query:   176 YSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNADQK 228
             +SSFS+GT  AVKTWQA+ GV EDG+MT+ELL+RL+M+  VE TD +  +  K
Sbjct:   208 FSSFSSGTASAVKTWQASLGVREDGVMTAELLQRLFMDEDVE-TDKDEASTMK 259

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam01471	57	pfam01471, PG_binding_1, Putative peptidoglycan bi	8e-11
TIGR02869	200	TIGR02869, spore_SleB, spore cortex-lytic enzyme	2e-05
COG3409	185	COG3409, COG3409, Putative peptidoglycan-binding d	5e-05

>gnl|CDD|216518 pfam01471, PG_binding_1, Putative peptidoglycan binding domain

 Score = 55.6 bits (135), Expect = 8e-11
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 151 EGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERL 210
            GEDVK +Q  L +LG++    D     F   TE AVK +Q   G+   GI+  E L  L
Sbjct: 1   SGEDVKELQRYLKRLGYYPGPVD---GVFGPSTEAAVKAFQRFFGLPVTGIVDPETLAAL 57

This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally. Length = 57

>gnl|CDD|213747 TIGR02869, spore_SleB, spore cortex-lytic enzyme

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 142 KRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGI 201
             +  + G+ G DV  +Q  L   G+++ + D     F  GT  AV+ +Q+  G+T DGI
Sbjct: 2   AVQTYQRGATGSDVIEIQRRLKYWGYYNGKVD---GVFGWGTYWAVRNFQSKNGLTVDGI 58

Query: 202 MTSELLERL 210
           +  +    L
Sbjct: 59  VGPKTKAAL 67

Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination [Cellular processes, Sporulation and germination]. Length = 200

>gnl|CDD|225943 COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 137 EGEKKKRKALRVGSEGEDVKAMQEELLKLGFFSS-EEDMEYSSFSTGTERAVKTWQAAKG 195
                    L +G+EG  V+ +Q  L  LG++     D     +   T  AV+ +Q   G
Sbjct: 30  GSVAAIDPVLTLGAEGPSVRILQAALNALGYYPDGVID---GVYGPETAAAVRAFQQKNG 86

Query: 196 V-TEDGIMTSELLERL 210
           +   DGI+       L
Sbjct: 87  LSPVDGIVGPATRAAL 102

Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PF01471	57	PG_binding_1: Putative peptidoglycan binding domai	99.56
TIGR02869	201	spore_SleB spore cortex-lytic enzyme. Members of t	99.43
PRK10594	608	murein L,D-transpeptidase; Provisional	99.0
COG3409	185	Putative peptidoglycan-binding domain-containing p	98.94
COG2989	561	Uncharacterized protein conserved in bacteria [Fun	98.83
COG3409	185	Putative peptidoglycan-binding domain-containing p	98.35
PF08823	74	PG_binding_2: Putative peptidoglycan binding domai	98.11
COG3023	257	ampD N-acetyl-anhydromuramyl-L-alanine amidase [Ce	97.29
PF09374	72	PG_binding_3: Predicted Peptidoglycan domain; Inte	96.13
PF02344	32	Myc-LZ: Myc leucine zipper domain; InterPro: IPR00	82.46
KOG1565	469	consensus Gelatinase A and related matrix metallop	80.81
PF09374	72	PG_binding_3: Predicted Peptidoglycan domain; Inte	80.75

>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure

Probab=99.56  E-value=8e-15  Score=103.00  Aligned_cols=57  Identities=39%  Similarity=0.595  Sum_probs=52.8

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHH
Q 045359          151 EGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERL  210 (249)
Q Consensus       151 ~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L  210 (249)
                      +|++|..+|..|..+||+.+..||.   ||..|..||+.||+.+||++||++|..||.+|
T Consensus         1 ~~~~v~~lq~~L~~~gy~~~~~~g~---~~~~t~~Av~~fQ~~~gL~~tG~~d~~T~~~L   57 (57)
T PF01471_consen    1 SGPDVKALQQYLNRLGYYPGPVDGI---FDPETREAVKAFQKANGLPVTGVVDPETWEAL   57 (57)
T ss_dssp             BSHHHHHHHHHHHHTTTT-SSTTSB---SHHHHHHHHHHHHHHTTS-SSSSBCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCCCCCCCC---cCHHHHHHHHHHHHHcCcCCCCccCHHHHhcC
Confidence            4789999999999999999999998   89999999999999999999999999999987

PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.

>TIGR02869 spore_SleB spore cortex-lytic enzyme

Probab=99.43  E-value=4.2e-13  Score=117.85  Aligned_cols=71  Identities=28%  Similarity=0.390  Sum_probs=66.3

Q ss_pred             cCcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccC
Q 045359          142 KRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHR  215 (249)
Q Consensus       142 ~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~  215 (249)
                      ..++|+.|+.+++|.+||++|..+||+.+.+||.   ||..|..||+.||+++||++||++|..||.+|+....
T Consensus         3 ~~~~l~~G~~g~~V~~LQ~~L~~lG~~~g~idG~---fg~~T~~AV~~FQ~~~GL~~dG~vg~~T~~~L~~~~~   73 (201)
T TIGR02869         3 AVQTYQRGSTGSDVIEIQRRLKAWGYYNGKVDGV---FGWLTYWAVRKFQSKNGLTVDGIVGPKTKAALGIATT   73 (201)
T ss_pred             CcccCCCCCCcHHHHHHHHHHHHcCCCCCCCCCc---cCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHhCCccc
Confidence            3468999999999999999999999999999998   9999999999999999999999999999999976544

Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination.

>PRK10594 murein L,D-transpeptidase; Provisional

Probab=99.00  E-value=3.1e-10  Score=113.79  Aligned_cols=85  Identities=22%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             cCcccCCCCChHHHHHHHHHHHHcCCCCCCC---------CC--------------------------------ccCCCC
Q 045359          142 KRKALRVGSEGEDVKAMQEELLKLGFFSSEE---------DM--------------------------------EYSSFS  180 (249)
Q Consensus       142 ~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~v---------DG--------------------------------~~~~Fd  180 (249)
                      ....|++|+.+++|..|.++|...|+.....         ++                                ....||
T Consensus       231 ~~~~LrpG~~~~~V~~LR~RL~~~G~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~YD  310 (608)
T PRK10594        231 GKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYD  310 (608)
T ss_pred             CCCCCCCCCCCchHHHHHHHHHHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            4568999999999999999999999874210         00                                012499


Q ss_pred             HHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccCccccccCCCcc
Q 045359          181 TGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTDTNMNAD  226 (249)
Q Consensus       181 ~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~~~~~~~~~n~~  226 (249)
                      ..+.+|||.||+.|||.+||+||+.|+.+||.+...++....+|+.
T Consensus       311 ~~Lv~AVK~FQ~rhGL~~DGvIG~~T~~~LNvs~~~R~~~l~lNmE  356 (608)
T PRK10594        311 NELVEAVKRFQAWQGLGADGVIGPRTRDWLNVTPAQRAGVLALNIQ  356 (608)
T ss_pred             HHHHHHHHHHHHHcCCCCCcCcCHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887777666666654

>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]

Probab=98.94  E-value=1.8e-09  Score=90.03  Aligned_cols=71  Identities=27%  Similarity=0.430  Sum_probs=65.0

Q ss_pred             cCcccCCCCChHHHHHHHHHHHHcCCCC-CCCCCccCCCCHHHHHHHHHHHHHcCC-CCCcccCHHHHHHHhhccC
Q 045359          142 KRKALRVGSEGEDVKAMQEELLKLGFFS-SEEDMEYSSFSTGTERAVKTWQAAKGV-TEDGIMTSELLERLYMEHR  215 (249)
Q Consensus       142 ~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~-g~vDG~~~~Fd~~T~~AVK~FQk~~GL-~~DGiVG~~T~~~L~~~~~  215 (249)
                      .......+..++.|..||..|+.+||+. +.+||.   ||+.|..||+.||+.+|| .+||++|+.|+.+|.....
T Consensus        35 ~~~~~~~~~~~~~v~~lq~~L~~~g~~~~~~~dg~---~g~~t~~av~~fQ~~~gl~~~dG~~g~~t~~al~~~~~  107 (185)
T COG3409          35 IDPVLTLGAEGPSVRILQAALNALGYYPDGVIDGV---YGPETAAAVRAFQQKNGLSPVDGIVGPATRAALPSQLK  107 (185)
T ss_pred             cccccccCCCCchHHHHHHHHHhcCCCCCCCccCc---cCcccHHHHHHHhhhcCcccccccccHHHHHHHHHHhh
Confidence            3456677789999999999999999999 999999   899999999999999999 8999999999999988553

>COG2989 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.83  E-value=2.8e-09  Score=105.19  Aligned_cols=102  Identities=21%  Similarity=0.300  Sum_probs=80.8

Q ss_pred             ccCcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccCccccc
Q 045359          141 KKRKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHRVEDTD  220 (249)
Q Consensus       141 ~~~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~~~~~~  220 (249)
                      +....|++|.++++|..|.++|...|-+.....+....||+.+..|||+||+.|||++||+||+.|+.+|+.+.+.+...
T Consensus       227 ~~~~~LrpG~~~~~v~aL~~~L~~~~~d~~~a~~~s~~yd~el~~avKrfQ~~~GL~~DGviG~~T~~aLn~s~~~Rl~~  306 (561)
T COG2989         227 PAGALLRPGVTSPDVPALRARLARSGMDLPSAAGSSPAYDPELVEAVKRFQARHGLPADGVIGPATRAALNVSVQIRLAQ  306 (561)
T ss_pred             CCccccCCCCCchhHHHHHHHHHhcCccchhhccCcccccHHHHHHHHHHHHHhCCCCCCcccHHHHHHhccCHHHHHHH
Confidence            45678999999999999999999999543233333245999999999999999999999999999999999988888888


Q ss_pred             cCCCcccCCcccccccCCCcCCccc
Q 045359          221 TNMNADQKGIIQTIPRKNPALGLKV  245 (249)
Q Consensus       221 ~~~n~~~k~~~q~~~~~~~~~g~~v  245 (249)
                      ...|+..   ...+|.-.+..|-+|
T Consensus       307 l~~n~eR---lR~lP~dl~~r~i~V  328 (561)
T COG2989         307 LALNLQR---LRWLPGDLGQRGIMV  328 (561)
T ss_pred             HHHHHHH---HhhCccccCCceEEE
Confidence            8877753   334444444444443

>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]

Probab=98.35  E-value=9.9e-07  Score=73.54  Aligned_cols=63  Identities=37%  Similarity=0.441  Sum_probs=58.3

Q ss_pred             cCCCCChHHHHHHHHHHHHcCCCCCC-CCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHh
Q 045359          146 LRVGSEGEDVKAMQEELLKLGFFSSE-EDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLY  211 (249)
Q Consensus       146 Lk~Gd~G~~V~~LQ~~L~~LGy~~g~-vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~  211 (249)
                      ...+..+..+..+|..+...||+.+. +||+   ||..|..+|+.||+.+||.+||++|..||..|.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~---fg~~t~~~v~~~q~~~~l~~dgi~g~~t~~~l~  184 (185)
T COG3409         121 PGLGLGGGDVATLQQPLPLLGYRSGIRVDGI---FGPQTEAAVKAFQRQYGLTVDGIVGPQTWAALR  184 (185)
T ss_pred             cCccccccchHHHHHHHHhcccccCCCCCCc---ccHHHHHHHHHHHHHhCCCCCeeecHHHHHHhh
Confidence            44578899999999999999999876 9998   999999999999999999999999999999985

>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain

Probab=98.11  E-value=7.9e-06  Score=61.80  Aligned_cols=58  Identities=28%  Similarity=0.583  Sum_probs=52.0

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcC----CCCCcccCHHHHHHH
Q 045359          150 SEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKG----VTEDGIMTSELLERL  210 (249)
Q Consensus       150 d~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~G----L~~DGiVG~~T~~~L  210 (249)
                      ..++.+..||..|..+|||.+.++|.   ||.+|.+|++.|+...+    +..||.||+.++.-|
T Consensus        13 l~~~~~~evq~~L~~lGyy~g~~~g~---~d~a~~~Al~~~~g~ENfE~R~~~~~~ID~~VL~~L   74 (74)
T PF08823_consen   13 LDGDVAREVQEALKRLGYYKGEADGV---WDEATEDALRAWAGTENFEERIRGDGKIDPVVLAYL   74 (74)
T ss_pred             CcHHHHHHHHHHHHHcCCccCCCCCc---ccHHHHHHHHHHHHHhhHHhhcCCCCccCHHHHhhC
Confidence            46889999999999999999999999   89999999999998776    478898999988653

>COG3023 ampD N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]

Probab=97.29  E-value=0.00044  Score=63.40  Aligned_cols=56  Identities=30%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCC-CCCcccCHHHHHHHhh
Q 045359          152 GEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGV-TEDGIMTSELLERLYM  212 (249)
Q Consensus       152 G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL-~~DGiVG~~T~~~L~~  212 (249)
                      +..|..||..|...||... . |.   ||..|+.+|+.||..++- ..||+.|.+|...|..
T Consensus       197 ~~~v~~lq~~L~~YGY~v~-~-~~---~d~~t~~vv~aFQ~hfrp~~~dg~~d~et~a~l~a  253 (257)
T COG3023         197 GEDVAALQEMLARYGYGVE-I-GV---FDQETQQVVRAFQMHFRPGLYDGEADVETIAILQA  253 (257)
T ss_pred             cCCHHHHHHHHHHhCcCCC-c-ch---hhHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHH
Confidence            3999999999999999984 4 77   899999999999999975 6999999999887764

>PF09374 PG_binding_3: Predicted Peptidoglycan domain; InterPro: IPR018537 This family contains a potential peptidoglycan binding domain

Probab=96.13  E-value=0.0054  Score=45.89  Aligned_cols=27  Identities=44%  Similarity=0.551  Sum_probs=18.9

Q ss_pred             HHHHHHHHHcC----CCCCcccCHHHHHHHh
Q 045359          185 RAVKTWQAAKG----VTEDGIMTSELLERLY  211 (249)
Q Consensus       185 ~AVK~FQk~~G----L~~DGiVG~~T~~~L~  211 (249)
                      .|||..|+..|    +.+||+||+.|+.+|.
T Consensus         1 rAik~LQ~alg~~~~v~~DG~iGp~Tl~Al~   31 (72)
T PF09374_consen    1 RAIKFLQRALGLGADVAVDGIIGPKTLAALN   31 (72)
T ss_dssp             HHHHHHHHHHT----S--SS--SHHHHHHHH
T ss_pred             CHHHHHHHHHccCCccCCCCCcCHHHHHHHh
Confidence            47888888888    8888888888888883

; PDB: 2IKB_B 2IS5_A 2NR7_A.

>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes

Probab=82.46  E-value=3.6  Score=26.64  Aligned_cols=29  Identities=38%  Similarity=0.574  Sum_probs=23.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 045359           53 EEQRWIRERESLLREISELKLQIKALENR   81 (249)
Q Consensus        53 ~~~r~~~~~~~~~~e~~~~~~~~~~~~~~   81 (249)
                      ||+|-..|-+.|.+..+.|+..++.|.|+
T Consensus         2 dEqkL~sekeqLrrr~eqLK~kLeqlrnS   30 (32)
T PF02344_consen    2 DEQKLISEKEQLRRRREQLKHKLEQLRNS   30 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            67888888999999999999999999876

Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.

>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]

Probab=80.81  E-value=2.8  Score=41.80  Aligned_cols=59  Identities=20%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359          154 DVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYM  212 (249)
Q Consensus       154 ~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~  212 (249)
                      .+..++..|...||.....-...+..+..+.+|++.||.-.||.++|.+|..|+..|..
T Consensus        29 ~~~~~~~yl~~~~y~~~~~~~~~~~~~~~~~~al~~~q~~~~l~~tG~lD~~Tl~~m~~   87 (469)
T KOG1565|consen   29 DKVALQDYLECYGYLPPTDLTATRASQNVLEDALKMMQDFFGLPVTGKLDNATLALMNK   87 (469)
T ss_pred             chhHHHHHhhhcccCCCccccccccCchhhHHHHHhhhhhcCccccCCcchhhhhhccC
Confidence            67788999999999874321111124889999999999999999999999999997765

>PF09374 PG_binding_3: Predicted Peptidoglycan domain; InterPro: IPR018537 This family contains a potential peptidoglycan binding domain

Probab=80.75  E-value=1.7  Score=32.33  Aligned_cols=29  Identities=21%  Similarity=-0.031  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHH
Q 045359          154 DVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAV  187 (249)
Q Consensus       154 ~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AV  187 (249)
                      .|+.||+.|.  .|....+||.   +|+.|..|+
T Consensus         2 Aik~LQ~alg--~~~~v~~DG~---iGp~Tl~Al   30 (72)
T PF09374_consen    2 AIKFLQRALG--LGADVAVDGI---IGPKTLAAL   30 (72)
T ss_dssp             HHHHHHHHHT------S--SS-----SHHHHHHH
T ss_pred             HHHHHHHHHc--cCCccCCCCC---cCHHHHHHH
Confidence            5889999996  3444589999   899999999

; PDB: 2IKB_B 2IS5_A 2NR7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1lbu_A	213	Muramoyl-pentapeptide carboxypeptidase; hydrolase,	2e-13
3bkh_A	268	Phikz144, lytic transglycosylase; bacteriophage, e	1e-12
4fet_B	222	Spore cortex-lytic enzyme prepeptide; transglycosy	5e-10

>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1 Length = 213

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 146 LRVGSEGEDVKAMQEELLKLGFF--SSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMT 203
           L  GS GE V+ +Q  +            D     F   T+ AV+ +Q+A G+  DGI  
Sbjct: 10  LSEGSSGEAVRQLQIRVAGYPGTGAQLAID---GQFGPATKAAVQRFQSAYGLAADGIAG 66

Query: 204 SELLERLYMEHRVEDTDTNMNADQ 227
                ++Y     + T  N    +
Sbjct: 67  PATFNKIYQLQDDDCTPVNFTYAE 90

>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A* Length = 268

 Score = 65.0 bits (157), Expect = 1e-12
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSE 205
           LR G  G++V  +Q  L   G+   + D     F   T   V  +Q    +  DGI+   
Sbjct: 12  LRKGDRGDEVCQLQTLLNLCGYDVGKPD---GIFGNNTFNQVVKFQKDNCLDSDGIVGKN 68

Query: 206 LLERLYMEHRVEDTDTNMN 224
               L+ ++        + 
Sbjct: 69  TWAELFSKYSPPIPYKTIP 87

>4fet_B Spore cortex-lytic enzyme prepeptide; transglycosylase, cortex hydrolase domain, sodium ION, seMet hydrolase; 1.91A {Bacillus anthracis} Length = 222

 Score = 56.8 bits (136), Expect = 5e-10
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSE 205
           ++ G+ GEDV  +Q  L   GF++ + D     F  GT  A++ +Q   G+  DG+  ++
Sbjct: 7   IQRGASGEDVIELQSRLKYNGFYTGKVD---GVFGWGTYWALRNFQEKFGLPVDGLAGAK 63

Query: 206 LLERLYMEHRVEDTDTNMNADQ 227
             + L    + + +  N     
Sbjct: 64  TKQMLVKATKYDKSTANKGNSG 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3bkh_A	268	Phikz144, lytic transglycosylase; bacteriophage, e	99.49
1lbu_A	213	Muramoyl-pentapeptide carboxypeptidase; hydrolase,	99.47
4fet_B	222	Spore cortex-lytic enzyme prepeptide; transglycosy	99.45
3d2y_A	261	N-acetylmuramoyl-L-alanine amidase AMID; zinc amid	98.98
1l6j_A	425	Matrix metalloproteinase-9; twisted beta sheet fla	97.07
1slm_A	255	Stromelysin-1; hydrolase, metalloprotease, fibrobl	96.99
1eak_A	421	72 kDa type IV collagenase; hydrolase-hydrolase in	96.89
2ikb_A	167	Hypothetical protein NMB1012; structural genomics,	96.37
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	96.32
1ck7_A	631	Protein (gelatinase A); hydrolase (metalloprotease	96.09
2nr7_A	195	Secretion activator protein, putative; APCC85792,	95.9
1lbu_A	213	Muramoyl-pentapeptide carboxypeptidase; hydrolase,	80.08

>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A*

Probab=99.49  E-value=4.4e-14  Score=127.13  Aligned_cols=70  Identities=26%  Similarity=0.340  Sum_probs=66.3

Q ss_pred             CcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccC
Q 045359          143 RKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHR  215 (249)
Q Consensus       143 ~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~  215 (249)
                      .++|+.|++|++|..||.+|+.+||+.+.+||.   ||+.|++||+.||+++||++||+||+.||.+|+....
T Consensus         9 ~~~l~~G~~g~~V~~lQ~~L~~~Gy~~g~~DG~---fg~~T~~AV~~FQ~~~gL~~dGivg~~T~~~L~~~~~   78 (268)
T 3bkh_A            9 MKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGI---FGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYS   78 (268)
T ss_dssp             SCCBCTTCBSHHHHHHHHHHHTTTCCCCSCCSB---CCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHHCC
T ss_pred             cccCcCCCchHHHHHHHHHHHHcCCCCCCCCCc---cCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhhc
Confidence            467999999999999999999999999999999   9999999999999999999999999999999987554

>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1

Probab=99.47  E-value=6.3e-14  Score=120.92  Aligned_cols=68  Identities=28%  Similarity=0.391  Sum_probs=63.5

Q ss_pred             cccCCCCChHHHHHHHHHHHHcCCCC--CCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhcc
Q 045359          144 KALRVGSEGEDVKAMQEELLKLGFFS--SEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEH  214 (249)
Q Consensus       144 ~~Lk~Gd~G~~V~~LQ~~L~~LGy~~--g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~  214 (249)
                      +.|++|++|++|..||.+|+.+||+.  +.+||.   ||+.|++||++||+++||++||++|+.||.+|+...
T Consensus         8 ~~l~~G~~g~~V~~lQ~~L~~~~~~~~~~~~dG~---fg~~t~~AV~~FQ~~~gL~~dG~vg~~T~~~L~~~~   77 (213)
T 1lbu_A            8 GTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQ---FGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQLQ   77 (213)
T ss_dssp             SCBCTTCBSHHHHHHHHHTTTCSCTTCCCCCSSB---CCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHHB
T ss_pred             ccCCCCCccHHHHHHHHHHHhcCCcCCCCCCCCC---cCHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHh
Confidence            47999999999999999999999873  688998   999999999999999999999999999999998754

>4fet_B Spore cortex-lytic enzyme prepeptide; transglycosylase, cortex hydrolase domain, sodium ION, seMet hydrolase; 1.91A {Bacillus anthracis}

Probab=99.45  E-value=7e-15  Score=129.84  Aligned_cols=70  Identities=27%  Similarity=0.434  Sum_probs=0.0

Q ss_pred             CcccCCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhccC
Q 045359          143 RKALRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYMEHR  215 (249)
Q Consensus       143 ~~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~~~  215 (249)
                      .++|++|++|++|..||.+|+.+||+.+.+||.   ||+.|++||+.||+++||++||++|+.||.+|+....
T Consensus         4 ~~~L~~G~~g~~V~~lQ~~L~~lGy~~g~~DG~---fG~~T~~AV~~FQ~~~GL~~DGivg~~T~~aL~~~~~   73 (222)
T 4fet_B            4 NQVIQRGASGEDVIELQSRLKYNGFYTGKVDGV---FGWGTYWALRNFQEKFGLPVDGLAGAKTKQMLVKATK   73 (222)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CCcccCCCCcHHHHHHHHHHHHcCCCCCCCCCC---cCHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHhccc
Confidence            468999999999999999999999999999999   8999999999999999999999999999999987553

>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A

Probab=98.98  E-value=4.6e-10  Score=100.63  Aligned_cols=60  Identities=13%  Similarity=0.058  Sum_probs=56.6

Q ss_pred             CCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHc-CCCCCcccCHHHHHHHhh
Q 045359          148 VGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAK-GVTEDGIMTSELLERLYM  212 (249)
Q Consensus       148 ~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~-GL~~DGiVG~~T~~~L~~  212 (249)
                      .|+.+++|..||.+|+.+||+.  +||.   ||..|++||++||+++ |+.+||++|++|+..|..
T Consensus       193 ~~~~g~~v~~lq~~L~~~GY~~--~dg~---~~~~t~~aV~aFQ~~~r~l~~dGi~d~~T~~~L~~  253 (261)
T 3d2y_A          193 APHTPVDTASLLELLARYGYDV--KPDM---TPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEA  253 (261)
T ss_dssp             CTTCBCCHHHHHHHHHHHTCCC--CSSC---CHHHHHHHHHHHHHHHCTTCCSCCCBHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHcCCCC--CCCc---cCHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence            4788999999999999999997  8998   9999999999999999 999999999999999975

>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2

Probab=97.07  E-value=0.00052  Score=65.69  Aligned_cols=58  Identities=21%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          153 EDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       153 ~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      .++...|..|...||........   ++..++.||+.||+.+||+++|++|..|+..|...
T Consensus        21 ~~~~~a~~yL~~yGYl~~~~~~~---~~~~l~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~P   78 (425)
T 1l6j_A           21 TDRQLAEEYLYRYGYTRVAEMRG---ESKSLGPALLLLQKQLSLPETGELDSATLKAMRTP   78 (425)
T ss_dssp             CHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSC
T ss_pred             ccHHHHHHHHHHcCCCCCccccc---chHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCC
Confidence            34666799999999987432223   57889999999999999999999999999999873

>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11

Probab=96.99  E-value=0.00071  Score=60.24  Aligned_cols=59  Identities=15%  Similarity=0.092  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcc-CCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359          154 DVKAMQEELLKLGFFSSEEDMEY-SSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYM  212 (249)
Q Consensus       154 ~V~~LQ~~L~~LGy~~g~vDG~~-~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~  212 (249)
                      ++..+|..|...||......... ..++..+..||+.||+-+||+++|++|..|+..|..
T Consensus        13 ~~~~~~~yL~~~gyl~~~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~   72 (255)
T 1slm_A           13 SMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRK   72 (255)
T ss_dssp             ---CHHHHHHHHSCCCCC---------CHHHHHHHHHHHHHTTCCCCSSCCHHHHHHTTS
T ss_pred             hHHHHHHHHHHcCCCCCcccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcC
Confidence            37889999999999964322110 026889999999999999999999999999998875

>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A

Probab=96.89  E-value=0.0016  Score=62.33  Aligned_cols=54  Identities=15%  Similarity=0.073  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHH-cCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          154 DVKAMQEELLK-LGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       154 ~V~~LQ~~L~~-LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      ++...|..|.. .||.... +     ++..++.||+.||+-+||+++|++|..|+..|...
T Consensus        15 ~~~~a~~yL~~~yGyl~~~-~-----~~~~~~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~P   69 (421)
T 1eak_A           15 DKELAVQYLNTFYGCPKES-C-----NLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKP   69 (421)
T ss_dssp             HHHHHHHHHHHHTCCCSSC-C-----CHHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSC
T ss_pred             cHHHHHHHHHHhcCCCCCC-C-----chHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCC
Confidence            56677999999 9998632 2     47899999999999999999999999999999873

>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*

Probab=96.37  E-value=0.0027  Score=53.49  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          182 GTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       182 ~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      ....|||.||+..||.+||+||+.|+.+|+..
T Consensus        89 G~~~Avk~lQ~~lgl~~DGiiGp~Tl~al~~~  120 (167)
T 2ikb_A           89 GYGNAARMLQRAAGVPDDGVIGAVSLKAINSL  120 (167)
T ss_dssp             CHHHHHHHHHHHTTSCCSSCCCHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHcCCCcCCCcCHHHHHHHHhc
Confidence            46789999999999999999999999999964

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=96.32  E-value=0.0033  Score=60.02  Aligned_cols=63  Identities=19%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCCcc-CCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          151 EGEDVKAMQEELLKLGFFSSEEDMEY-SSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       151 ~G~~V~~LQ~~L~~LGy~~g~vDG~~-~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      ...++..+|..|...||......+.. ..++..+..||+.||+-.||+++|+++..|+..|...
T Consensus         8 ~~~~~~~~~~yL~~~gyl~~~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~p   71 (450)
T 1su3_A            8 QEQDVDLVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQP   71 (450)
T ss_dssp             -----CHHHHHHHHHSCCC------------CHHHHHHHHHHHHTTCCCCSSCCHHHHHHHTSC
T ss_pred             chhhHHHHHHHHHHhCCCCCcccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcCC
Confidence            34567888999999999964222210 0157789999999999999999999999999998763

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A

Probab=96.09  E-value=0.0069  Score=60.46  Aligned_cols=54  Identities=15%  Similarity=0.075  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHH-cCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359          153 EDVKAMQEELLK-LGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYM  212 (249)
Q Consensus       153 ~~V~~LQ~~L~~-LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~  212 (249)
                      .++..+|..|.. .||.... +     ++..++.||+.||+.+||+++|++|..|+..|..
T Consensus        16 ~~~~~~~~yL~~~ygyl~~~-~-----~~~~~~~al~~~Q~~~gL~~TG~lD~~T~~~m~~   70 (631)
T 1ck7_A           16 TDKELAVQYLNTFYGCPKES-C-----NLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRK   70 (631)
T ss_dssp             CHHHHHHHHHHHHTCCCTTT-C-----SHHHHHHHHHHHHHHHTCCSCSSCCHHHHHHTTS
T ss_pred             ccHHHHHHHHHHhcCCCCCC-C-----chHHHHHHHHHHHHHcCCCCccccCHHHHHHhcC
Confidence            356677999998 9998632 1     4789999999999999999999999999999886

>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9

Probab=95.90  E-value=0.005  Score=53.27  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHcCCCCCcccCHHHHHHHhh
Q 045359          184 ERAVKTWQAAKGVTEDGIMTSELLERLYM  212 (249)
Q Consensus       184 ~~AVK~FQk~~GL~~DGiVG~~T~~~L~~  212 (249)
                      ..||+.||+.+||.+||+||+.|+.+|+.
T Consensus       103 ~~Avk~LQr~lgl~~DGiiGp~TlaAl~~  131 (195)
T 2nr7_A          103 KYGIVIPQRILGVQADGIVGNKTLQAVNS  131 (195)
T ss_dssp             THHHHHHHHHHTSCCCSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcCCCcCHHHHHHHHc
Confidence            67999999999999999999999999996

>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1

Probab=80.08  E-value=0.55  Score=39.67  Aligned_cols=49  Identities=14%  Similarity=-0.044  Sum_probs=37.3

Q ss_pred             HHcCCCCCCCCCccCCCCHHHHHHH---HHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          163 LKLGFFSSEEDMEYSSFSTGTERAV---KTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       163 ~~LGy~~g~vDG~~~~Fd~~T~~AV---K~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      ..+|+....+++.|  -.+.+-++|   +.||..+|+.+|++|+..|+..|...
T Consensus       124 ~~~g~~~i~V~sgy--R~~~~N~~vgg~~~s~H~~G~A~D~~v~~~~~~~l~~~  175 (213)
T 1lbu_A          124 HAMGDKPITVNGGF--RSVTCNSNVGGASNSRHMYGHAADLGAGSQGFCALAQA  175 (213)
T ss_dssp             HHTTSCCCCEEECC--CCHHHHHHHTCCTTCGGGGTCEEEECCTTTCHHHHHHH
T ss_pred             HhcCCCCeEecccc--CCHHHccccCCCCCCCCCCceEeeeCCCCcCHHHHHHH
Confidence            36785455667662  345666777   89999999999999999999888664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d1lbua1	83	a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-term	1e-11

>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]} Length = 83

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: Peptidoglycan binding domain, PGBD
domain: Zn2+ DD-carboxypeptidase, N-terminal domain
species: Streptomyces albus G [TaxId: 1962]

 Score = 56.9 bits (137), Expect = 1e-11
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 146 LRVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSE 205
           L  GS GE V+ +Q  +       ++  ++   F   T+ AV+ +Q+A G+  DGI    
Sbjct: 10  LSEGSSGEAVRQLQIRVAGYPGTGAQLAID-GQFGPATKAAVQRFQSAYGLAADGIAGPA 68

Query: 206 LLERLYMEHRVEDTD 220
              ++Y   +++D D
Sbjct: 69  TFNKIY---QLQDDD 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1lbua1	83	Zn2+ DD-carboxypeptidase, N-terminal domain {Strep	99.65
d1l6ja1	77	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	98.54
d1slma1	65	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	98.01
d1su3a1	67	Fibroblast collagenase (MMP-1) {Human (Homo sapien	97.98
d1eaka1	76	Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId:	97.74
d2bgxa1	81	Probable N-acetylmuramoyl-L-alanine amidase YbjR,	97.57
d2ikba1	163	Hypothetical protein NMB1012 {Neisseria meningitid	94.42
d2nr7a1	192	Putative secretion activator PG0293 {Porphyromonas	94.28

>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: Peptidoglycan binding domain, PGBD
domain: Zn2+ DD-carboxypeptidase, N-terminal domain
species: Streptomyces albus G [TaxId: 1962]

Probab=99.65  E-value=1.3e-16  Score=118.64  Aligned_cols=67  Identities=28%  Similarity=0.407  Sum_probs=62.3

Q ss_pred             cccCCCCChHHHHHHHHHHHHcCCCCC--CCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          144 KALRVGSEGEDVKAMQEELLKLGFFSS--EEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       144 ~~Lk~Gd~G~~V~~LQ~~L~~LGy~~g--~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      ++|+.|++|++|+.||.+|+.+||..+  .+||.   ||+.|++||++||+.+||++||++|+.||.+|+.-
T Consensus         8 ~~L~~G~~g~~V~~lQ~~L~~~g~~~~~~~~dg~---fg~~t~~AV~~FQ~~~gL~~dGivg~~T~~~L~~~   76 (83)
T d1lbua1           8 GTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQ---FGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQL   76 (83)
T ss_dssp             SCBCTTCBSHHHHHHHHHTTTCSCTTCCCCCSSB---CCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCCCCCcCCCCc---cCHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence            589999999999999999999999654  57887   99999999999999999999999999999999864

>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.9e-08  Score=71.17  Aligned_cols=59  Identities=20%  Similarity=0.157  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          152 GEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       152 G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      -.++...|..|...||.....++.   ++..+..||+.||+-+||+++|++|..|+..|...
T Consensus        11 ~~d~~~a~~yL~~fGYl~~~~~~~---~~~~~~~AIk~fQ~f~gL~vTG~lD~~T~~~M~~p   69 (77)
T d1l6ja1          11 LTDRQLAEEYLYRYGYTRVAEMRG---ESKSLGPALLLLQKQLSLPETGELDSATLKAMRTP   69 (77)
T ss_dssp             CCHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHcCCCCCCCccc---chHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHccC
Confidence            346777899999999998766666   68899999999999999999999999999999763

>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=98.01  E-value=3.4e-06  Score=59.51  Aligned_cols=56  Identities=16%  Similarity=0.084  Sum_probs=42.2

Q ss_pred             HHHHHHHcCCCCCCCCCccC-CCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          158 MQEELLKLGFFSSEEDMEYS-SFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       158 LQ~~L~~LGy~~g~vDG~~~-~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      +|..|...||.......... .....+..||+.||+-+||+++|++|..|+..+...
T Consensus         2 ~~~YL~~fgyl~~~~~~~~~~~~~~~l~~Ai~~~Q~f~~L~~TG~lD~~T~~~M~~P   58 (65)
T d1slma1           2 VQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKP   58 (65)
T ss_dssp             HHHHHHHHSCCCCC---------CHHHHHHHHHHHHHTTCCCCSSCCHHHHHHTTSC
T ss_pred             HHHHHHHcCCCCCCcccccccccHHHHHHHHHHHHHHcCCCccccCCHHHHHHHCcC
Confidence            57889999998643222100 135579999999999999999999999999998763

>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.9e-06  Score=59.49  Aligned_cols=57  Identities=18%  Similarity=0.047  Sum_probs=41.6

Q ss_pred             HHHHHHHHcCCCCCCCCCcc-CCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          157 AMQEELLKLGFFSSEEDMEY-SSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       157 ~LQ~~L~~LGy~~g~vDG~~-~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      .+|..|...||......... ......+..||+.||+-+||+++|++|..|+..+...
T Consensus         2 l~~~YL~~fgyl~~~~~~~~~~~~~~~~~~Aik~fQ~f~~L~~TG~lD~~T~~~M~~P   59 (67)
T d1su3a1           2 LVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQP   59 (67)
T ss_dssp             HHHHHHHHHSCCC------------CHHHHHHHHHHHHTTCCCCSSCCHHHHHHHTSC
T ss_pred             HHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHcCCCcccccCHHHHHHHCCC
Confidence            36889999999863221110 0135579999999999999999999999999998763

>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Gelatinase A (MMP-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.2e-05  Score=56.16  Aligned_cols=56  Identities=14%  Similarity=0.024  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          153 EDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       153 ~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      .++...+..|...||....  +.   -...++.||+.||+-+||+++|++|..|+..|...
T Consensus        14 ~d~e~A~~YL~~fgyl~~~--~~---~~~~l~~ai~~~Q~f~~L~~TG~lD~~T~~~m~~p   69 (76)
T d1eaka1          14 TDKELAVQYLNTFYGCPKE--SC---NLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKP   69 (76)
T ss_dssp             CHHHHHHHHHHHHTCCCSS--CC---CHHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSC
T ss_pred             ccHHHHHHHHHHhCCCCcC--CC---ccHHHHHHHHHHHHHcCCCcccccCHHHHHHHccC
Confidence            3677788999999998743  22   14568999999999999999999999999998753

>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: Peptidoglycan binding domain, PGBD
domain: Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=7.1e-05  Score=54.75  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             CCCCChHHHHHHHHHHHHcCCCCCCCCCccCCCCHHHHHHHHHHHHHcC-CCCCcccCHHHHHHHhh
Q 045359          147 RVGSEGEDVKAMQEELLKLGFFSSEEDMEYSSFSTGTERAVKTWQAAKG-VTEDGIMTSELLERLYM  212 (249)
Q Consensus       147 k~Gd~G~~V~~LQ~~L~~LGy~~g~vDG~~~~Fd~~T~~AVK~FQk~~G-L~~DGiVG~~T~~~L~~  212 (249)
                      +.+....++..+|..|..+||.. . ++.   ++..++..|++||.++- -..||++|.+|+..|..
T Consensus        13 ~~~~~~~~~~~~~~~L~k~GY~i-~-~~~---~~~~~k~vi~AFQrhFRp~~i~G~~D~Et~~Il~~   74 (81)
T d2bgxa1          13 RAPHTPVDTASLLELLARYGYDV-K-PDM---TPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEA   74 (81)
T ss_dssp             CCTTCBCCHHHHHHHHHHHTCCC-C-TTC---CHHHHHHHHHHHHHHHCTTCCSSCCBHHHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHcCCCC-C-CCC---CcHHHHHHHHHHHHHccccccCCcCCHHHHHHHHH
Confidence            34455668999999999999976 3 555   68899999999999985 46899999999887764

>d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: NMB1012-like
domain: Hypothetical protein NMB1012
species: Neisseria meningitidis [TaxId: 487]

Probab=94.42  E-value=0.016  Score=46.53  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          182 GTERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       182 ~T~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      ....|+|..|+..|+.+||+||+.|+.+|+..
T Consensus        89 G~~~A~k~LQ~al~v~vDGiiGp~Tl~Al~~~  120 (163)
T d2ikba1          89 GYGNAARMLQRAAGVPDDGVIGAVSLKAINSL  120 (163)
T ss_dssp             CHHHHHHHHHHHTTSCCSSCCCHHHHHHHHHS
T ss_pred             CccHHHHHHHHHhCcccccccCHHHHHHHHhc
Confidence            45899999999999999999999999998764

>d2nr7a1 d.2.1.9 (A:1-192) Putative secretion activator PG0293 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: NMB1012-like
domain: Putative secretion activator PG0293
species: Porphyromonas gingivalis [TaxId: 837]

Probab=94.28  E-value=0.014  Score=47.86  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHcCCCCCcccCHHHHHHHhhc
Q 045359          184 ERAVKTWQAAKGVTEDGIMTSELLERLYME  213 (249)
Q Consensus       184 ~~AVK~FQk~~GL~~DGiVG~~T~~~L~~~  213 (249)
                      ..||+..|+..|+.+||+||+.|+.+|+..
T Consensus       100 ~~A~k~LQ~algv~~DGiiGp~Tl~Al~~~  129 (192)
T d2nr7a1         100 KYGIVIPQRILGVQADGIVGNKTLQAVNSA  129 (192)
T ss_dssp             THHHHHHHHHHTSCCCSCCCHHHHHHHHHS
T ss_pred             hHHHHHHHHHhCCCccCCcCHHHHHHHHhc
Confidence            368999999999999999999999999764