Citrus Sinensis ID: 045407
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| 255565589 | 394 | conserved hypothetical protein [Ricinus | 0.960 | 0.931 | 0.698 | 1e-148 | |
| 356539276 | 390 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.946 | 0.669 | 1e-142 | |
| 388497402 | 386 | unknown [Lotus japonicus] | 0.939 | 0.930 | 0.666 | 1e-141 | |
| 225464986 | 399 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.927 | 0.683 | 1e-140 | |
| 224080788 | 406 | predicted protein [Populus trichocarpa] | 0.793 | 0.746 | 0.772 | 1e-140 | |
| 356542740 | 390 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.946 | 0.661 | 1e-139 | |
| 357471687 | 388 | hypothetical protein MTR_4g053410 [Medic | 0.945 | 0.930 | 0.664 | 1e-139 | |
| 296084933 | 360 | unnamed protein product [Vitis vinifera] | 0.866 | 0.919 | 0.675 | 1e-138 | |
| 449443392 | 388 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.943 | 0.638 | 1e-135 | |
| 449501635 | 388 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.943 | 0.636 | 1e-134 |
| >gi|255565589|ref|XP_002523784.1| conserved hypothetical protein [Ricinus communis] gi|223536872|gb|EEF38510.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/375 (69%), Positives = 303/375 (80%), Gaps = 8/375 (2%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGKRDKKQ+ + SR ++ E+E+ GY YS SSLP+ E ++ EE
Sbjct: 1 MGKRDKKQRHHNQHRSRVASYYNT--EQEDDGYS--YSQ-SSLPNEDSDAEPDDVEEEEE 55
Query: 61 DFDKADDDRDKNDTNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQED 120
+ ++ D +D S D+PSKFLLYQQSVQSPKGDISYLQKFFL+YVGGR PLH QED
Sbjct: 56 ---EEEEKEDTSDAKASNDVPSKFLLYQQSVQSPKGDISYLQKFFLLYVGGRLPLHFQED 112
Query: 121 FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180
FCGTALLSTEWLRSDSRRTAVG+DLDLEAL WCM NN+NK+GADGYSRISLFHGNVLQP
Sbjct: 113 FCGTALLSTEWLRSDSRRTAVGVDLDLEALNWCMANNVNKIGADGYSRISLFHGNVLQPS 172
Query: 181 EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240
+A+LVR+EPQ L+ NI L E + E + +ESA+Q +AS D K+ LPARDI+C
Sbjct: 173 DAELVRFEPQDLISNIKLGEQGDNSENTALESALQVGSSASVSDKYLKRNFQLPARDIVC 232
Query: 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVW 300
AFNYSCCCLHKRADLVLYFKHVL ALSKKGG+FVMDLYGGTSSE KLRLQRRF NFTY+W
Sbjct: 233 AFNYSCCCLHKRADLVLYFKHVLDALSKKGGLFVMDLYGGTSSEGKLRLQRRFPNFTYIW 292
Query: 301 EQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLR 360
EQAEF+IIERKTRISLHFHLQK+QKKLRHAFSY+WRLWSLPEI+DCLEEAGF+S+HFWLR
Sbjct: 293 EQAEFNIIERKTRISLHFHLQKQQKKLRHAFSYSWRLWSLPEIRDCLEEAGFKSIHFWLR 352
Query: 361 EMPDAREMRNTEGLG 375
MPD+++ R+ EG G
Sbjct: 353 RMPDSKDNRSVEGFG 367
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539276|ref|XP_003538125.1| PREDICTED: uncharacterized protein LOC100790563 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/381 (66%), Positives = 295/381 (77%), Gaps = 12/381 (3%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGKR+K++QR +R RG F+ QE+ + P SS EE E G E
Sbjct: 1 MGKREKQKQRHERGHRGRGS-FNYLQEDHD---------FDDTPRSSPSEE-EGADGSNE 49
Query: 61 DFDKADDDRDKNDTNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQED 120
+ ++ +++ + N S DMPSKFLLYQQSVQSPKGDISY+QKFFL+YVGGR PLHLQED
Sbjct: 50 EKEEDEENVTISHENQSHDMPSKFLLYQQSVQSPKGDISYMQKFFLMYVGGRMPLHLQED 109
Query: 121 FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180
FCGTALLSTEWLRSDSRRT VGLDLDLEAL WCMENN+ KVGADG+SRISLFHGNVLQPL
Sbjct: 110 FCGTALLSTEWLRSDSRRTVVGLDLDLEALNWCMENNIPKVGADGFSRISLFHGNVLQPL 169
Query: 181 EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240
++KLV+ +PQ+LV NISL + + L+T ES A D +K +LP RDI+C
Sbjct: 170 QSKLVKVDPQELVSNISLSQNEENLQTGVPESDAPTGSIAQD-DKYTKGNITLPGRDIVC 228
Query: 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVW 300
AFNYSCCCLHKRA+LV+YFKH ALS KGGIFVMDLYGGTSSE KLRLQRRF NFTYVW
Sbjct: 229 AFNYSCCCLHKRAELVMYFKHARGALSTKGGIFVMDLYGGTSSEHKLRLQRRFPNFTYVW 288
Query: 301 EQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLR 360
EQAEFDII+RKTRISLHFH++KEQ+KLRHAFSY+WRLW+LPEI+DCLEEAGFRSVHFW+R
Sbjct: 289 EQAEFDIIQRKTRISLHFHMKKEQRKLRHAFSYSWRLWTLPEIRDCLEEAGFRSVHFWVR 348
Query: 361 EMPDAREMRNTEGLGGFSRCK 381
EMPD E+ TEG G K
Sbjct: 349 EMPDTTEIMKTEGFGAGKNVK 369
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497402|gb|AFK36767.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/375 (66%), Positives = 293/375 (78%), Gaps = 16/375 (4%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGKR+K++ +++ S+RG R Q+E+ G + D H +S G EE
Sbjct: 1 MGKREKQKVKEKHGRSQRG-RDYYLQDEQHDGDDEDKQHDGDAYNS----------GVEE 49
Query: 61 DFDKADDDRDKNDTNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQED 120
+D KN +PS D+PSKFLLYQQSVQSPKGDISYLQKFFL+Y GGR PLHLQED
Sbjct: 50 ----TEDGEVKNHQHPSHDLPSKFLLYQQSVQSPKGDISYLQKFFLMYGGGRMPLHLQED 105
Query: 121 FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180
FCGTA LS EWLRSD R+TA+GLDLDLEAL WCMENN+ KVGADG+SRISLFHGNVLQPL
Sbjct: 106 FCGTAFLSMEWLRSDPRKTAIGLDLDLEALNWCMENNVPKVGADGFSRISLFHGNVLQPL 165
Query: 181 EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240
++KLV+ +PQ++VRNISL + TLET +ES Q + A + +K+ LP RDI+C
Sbjct: 166 QSKLVKTDPQEMVRNISLSQNSETLETGVLESDTQTSSVAQDVE-LTKRNFPLPGRDIVC 224
Query: 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVW 300
AFNYSCCCLHKRADL+LYFKH ALS KGGIFVMDLYGG+SSE KLRLQRRF NFTYVW
Sbjct: 225 AFNYSCCCLHKRADLILYFKHARDALSTKGGIFVMDLYGGSSSEHKLRLQRRFPNFTYVW 284
Query: 301 EQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLR 360
EQAEFDII+RKTRISLHFHL+KEQ+K+R AFSY+WRLW+LPEI+DCLEEAGFRSVHFW+R
Sbjct: 285 EQAEFDIIQRKTRISLHFHLKKEQRKIRQAFSYSWRLWTLPEIRDCLEEAGFRSVHFWIR 344
Query: 361 EMPDAREMRNTEGLG 375
EMPD E+ TEG G
Sbjct: 345 EMPDTSEITRTEGFG 359
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Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464986|ref|XP_002274661.1| PREDICTED: uncharacterized protein LOC100241698 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/376 (68%), Positives = 294/376 (78%), Gaps = 6/376 (1%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGK KKQ++QQ+ RG F QEE++ G+ Y H+S S E E
Sbjct: 1 MGKSGKKQRQQQK--PPRGSYFP--QEEDDEGHHHHY-HYSDETLQSSSRGINIEDDKEV 55
Query: 61 DFDKADDDRDKNDTNPSTD-MPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQE 119
+ + + D D NP TD MPSKFLLYQQSVQSPKGDISYLQKFFL+YVGGR PLHLQE
Sbjct: 56 EDEDEVQEEDGADPNPLTDDMPSKFLLYQQSVQSPKGDISYLQKFFLMYVGGRVPLHLQE 115
Query: 120 DFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179
DFCGTALLSTEWLRSD RRTAVGLDLD+EAL+WCMENN+NK+GADGYSR+SLFHGNVLQP
Sbjct: 116 DFCGTALLSTEWLRSDPRRTAVGLDLDVEALDWCMENNVNKIGADGYSRLSLFHGNVLQP 175
Query: 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239
LE+KLV+ + ++RN +LE+ T ++S +Q AS+ K+ LPARDI+
Sbjct: 176 LESKLVKSQLSDIIRNFTLEDSIADSGTVPLDSNIQACPNASTDGEIIKRNFGLPARDIV 235
Query: 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV 299
CAFNYSCCCLHKR +LVLYFKHVL LSKKGGIFVMDLYGGTSSE KLRLQRRF NFTY
Sbjct: 236 CAFNYSCCCLHKRGELVLYFKHVLDVLSKKGGIFVMDLYGGTSSECKLRLQRRFPNFTYY 295
Query: 300 WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359
WEQAEFDII+RKTRISLHFHLQK+Q+KLRHAFSY+WRLWSLPEIKDCLEEAGF SVHFW+
Sbjct: 296 WEQAEFDIIQRKTRISLHFHLQKQQRKLRHAFSYSWRLWSLPEIKDCLEEAGFHSVHFWI 355
Query: 360 REMPDAREMRNTEGLG 375
R+MPD E R+TEG G
Sbjct: 356 RQMPDTEENRSTEGFG 371
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080788|ref|XP_002306230.1| predicted protein [Populus trichocarpa] gi|222849194|gb|EEE86741.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/303 (77%), Positives = 264/303 (87%)
Query: 74 TNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR 133
T DMPSKFLLYQQSVQSPKGDISYLQKFFL+YVGGR PLHLQEDFCGTALLSTEWLR
Sbjct: 77 TASKKDMPSKFLLYQQSVQSPKGDISYLQKFFLMYVGGRLPLHLQEDFCGTALLSTEWLR 136
Query: 134 SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193
+DSRRTAVG+DLDLEAL+WC+ENN++KVGADGYSRISLFHGNVLQPLEAKLV +E Q+++
Sbjct: 137 NDSRRTAVGVDLDLEALDWCIENNMDKVGADGYSRISLFHGNVLQPLEAKLVNFESQEII 196
Query: 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253
NI ++C + E++ ++SAVQ + S+ D K+ L RDI+CAFNYSCCCLHKRA
Sbjct: 197 NNIRSKDCKDDSESNELKSAVQVGSSTSTDDMYMKRNVQLVPRDIVCAFNYSCCCLHKRA 256
Query: 254 DLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTR 313
+LVLYFKHVL LSKKGGIFVMDLYGGTSSE KLRLQRRF NFTY+WEQAEFDII RKTR
Sbjct: 257 ELVLYFKHVLGVLSKKGGIFVMDLYGGTSSESKLRLQRRFPNFTYIWEQAEFDIIGRKTR 316
Query: 314 ISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDAREMRNTEG 373
ISLHFHLQK+Q+KLRHAFSY+WRLWSLPEIKDCLEEAGF+SVHFW+R+MPD R TEG
Sbjct: 317 ISLHFHLQKQQRKLRHAFSYSWRLWSLPEIKDCLEEAGFQSVHFWIRQMPDTEANRRTEG 376
Query: 374 LGG 376
G
Sbjct: 377 FGA 379
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542740|ref|XP_003539823.1| PREDICTED: uncharacterized protein LOC100801710 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/381 (66%), Positives = 298/381 (78%), Gaps = 12/381 (3%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGKR+K++QR ++ RG NY +E+ D+ + PS S+ E A++ +E
Sbjct: 1 MGKREKQKQRHEKGHRGRGS--FNYLQEDH-----DFDD-TPRPSPSEEECADDSNEEKE 52
Query: 61 DFDKADDDRDKNDTNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQED 120
+ +++ ++ N S DMPSKFLLYQQSVQSPKGDISYLQKFFL+YVGGR PLHLQED
Sbjct: 53 ---EEEEEEEEGHENQSHDMPSKFLLYQQSVQSPKGDISYLQKFFLMYVGGRMPLHLQED 109
Query: 121 FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180
FCGTALLSTEWLRSDSRRT VGLDLDLEAL WCME+N+ KVGADG+SR+SLFHGNVLQPL
Sbjct: 110 FCGTALLSTEWLRSDSRRTVVGLDLDLEALNWCMESNIPKVGADGFSRMSLFHGNVLQPL 169
Query: 181 EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240
++KLV+ +PQ+LV +ISL + + L+T ES A D +K+ LP RDI+C
Sbjct: 170 QSKLVKIDPQQLVSDISLSQNEENLQTDVPESDAPTGSVAQD-DKYTKRNIILPGRDIVC 228
Query: 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVW 300
AFNYSCCCLHKRA+LVLYFKH ALS KGGIFVMDLYGGTSSE KLRLQRRF NFTYVW
Sbjct: 229 AFNYSCCCLHKRAELVLYFKHAREALSTKGGIFVMDLYGGTSSEHKLRLQRRFPNFTYVW 288
Query: 301 EQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLR 360
EQAEFDII+RKTRISLHFH++KEQ+KLRHAFSY+WRLW+LPEI+DCLEEAGFRSVHFW+R
Sbjct: 289 EQAEFDIIQRKTRISLHFHMKKEQRKLRHAFSYSWRLWTLPEIRDCLEEAGFRSVHFWVR 348
Query: 361 EMPDAREMRNTEGLGGFSRCK 381
EMPD E+ TEG G K
Sbjct: 349 EMPDTTEIMRTEGFGAGKNVK 369
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357471687|ref|XP_003606128.1| hypothetical protein MTR_4g053410 [Medicago truncatula] gi|355507183|gb|AES88325.1| hypothetical protein MTR_4g053410 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/375 (66%), Positives = 295/375 (78%), Gaps = 14/375 (3%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGKR+K++Q+ R R + E++ +S S H E E+E E+
Sbjct: 1 MGKREKQKQKHDRSQRGRDYYLQDNNEDD-----------TSTMLSPSHNEDEDEI--ED 47
Query: 61 DFDKADDDRDKNDTNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQED 120
D D+ D ND +PS DMPSKFLLYQQSVQSPKGDISYLQKFFL+YVGGR PLHLQED
Sbjct: 48 AADSDADNNDNNDQHPSHDMPSKFLLYQQSVQSPKGDISYLQKFFLMYVGGRVPLHLQED 107
Query: 121 FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180
FCGTALLS EWLRSD R+TAVGLDLDLEAL WC+ENN+ K+GADG+SRISLFHGNVLQPL
Sbjct: 108 FCGTALLSAEWLRSDPRKTAVGLDLDLEALNWCLENNIPKIGADGFSRISLFHGNVLQPL 167
Query: 181 EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240
++KLV+ +P++LVRNISL + L+T IES V + +A+ D + +L RDI+C
Sbjct: 168 QSKLVKIDPEELVRNISLSQNTENLQTDVIESDVPTS-SAAQDDELTMNNFTLSGRDIVC 226
Query: 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVW 300
AFNYSCCCLHKRA+LVLYFKH ALSKKGGIFVMDLYGGTSSE L+LQRRF NFTYVW
Sbjct: 227 AFNYSCCCLHKRAELVLYFKHARDALSKKGGIFVMDLYGGTSSENTLKLQRRFPNFTYVW 286
Query: 301 EQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLR 360
EQAEFDII+RKTRISLHFHL+KE++K+RHAFSY+WRLW+LPEI+DCLEEAGFR+VHFW+R
Sbjct: 287 EQAEFDIIQRKTRISLHFHLKKEKRKIRHAFSYSWRLWTLPEIRDCLEEAGFRAVHFWVR 346
Query: 361 EMPDAREMRNTEGLG 375
EMPD+ E+ TEG G
Sbjct: 347 EMPDSTEITRTEGFG 361
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084933|emb|CBI28342.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/376 (67%), Positives = 290/376 (77%), Gaps = 45/376 (11%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGK KKQ++QQ+ RG F QEE++ G+ Y + + +E +EE G
Sbjct: 1 MGKSGKKQRQQQK--PPRGSYFP--QEEDDEGHHHHYHY--------NEDEVQEEDGA-- 46
Query: 61 DFDKADDDRDKNDTNPSTD-MPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQE 119
D NP TD MPSKFLLYQQSVQSPKGDISYLQKFFL+YVGGR PLHLQE
Sbjct: 47 ------------DPNPLTDDMPSKFLLYQQSVQSPKGDISYLQKFFLMYVGGRVPLHLQE 94
Query: 120 DFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179
DFCGTALLSTEWLRSD RRTAVGLDLD+EAL+WCMENN+NK+GADGYSR+SLFHGNVLQP
Sbjct: 95 DFCGTALLSTEWLRSDPRRTAVGLDLDVEALDWCMENNVNKIGADGYSRLSLFHGNVLQP 154
Query: 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239
LE+KLV+ + ++RN +LE D+ ++ TI ++ NF LPARDI+
Sbjct: 155 LESKLVKSQLSDIIRNFTLE--DSIADSGTI---IKRNF-------------GLPARDIV 196
Query: 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV 299
CAFNYSCCCLHKR +LVLYFKHVL LSKKGGIFVMDLYGGTSSE KLRLQRRF NFTY
Sbjct: 197 CAFNYSCCCLHKRGELVLYFKHVLDVLSKKGGIFVMDLYGGTSSECKLRLQRRFPNFTYY 256
Query: 300 WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359
WEQAEFDII+RKTRISLHFHLQK+Q+KLRHAFSY+WRLWSLPEIKDCLEEAGF SVHFW+
Sbjct: 257 WEQAEFDIIQRKTRISLHFHLQKQQRKLRHAFSYSWRLWSLPEIKDCLEEAGFHSVHFWI 316
Query: 360 REMPDAREMRNTEGLG 375
R+MPD E R+TEG G
Sbjct: 317 RQMPDTEENRSTEGFG 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443392|ref|XP_004139461.1| PREDICTED: uncharacterized protein LOC101220503 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/382 (63%), Positives = 292/382 (76%), Gaps = 16/382 (4%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGK DKKQ+ R RR +F++ E E G D++ H LP + E EE
Sbjct: 1 MGKGDKKQKHHDRHSRRRDFKFTSEGEVMEDG---DFNSHP-LPQEEEQEVEVEEE---- 52
Query: 61 DFDKADDDRDKNDTNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQED 120
+++ ++ S D+PSKF LYQQSVQSPKGDISYLQKFFL+YVGGRQP+H QED
Sbjct: 53 -------EQETSNEASSMDIPSKFQLYQQSVQSPKGDISYLQKFFLMYVGGRQPIHFQED 105
Query: 121 FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180
FCGTALLS EWLRSDSRRTAVGLDLDLEAL WCMENN+N++GADG+SRISLFHGNVL P
Sbjct: 106 FCGTALLSLEWLRSDSRRTAVGLDLDLEALVWCMENNVNRIGADGFSRISLFHGNVLHPS 165
Query: 181 EAKLVRYEPQ-KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239
EA+LV EP+ L+ N+++E+ + E S +S V++ + + + K+ +L ARDI+
Sbjct: 166 EARLVNPEPEVDLIDNLTMEDSKDNPEASASKSIVKEESASFNDNKYLKRNITLAARDIV 225
Query: 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV 299
CAFNYSCCCLH RADLV+YFKH LSKKGGIFVMDLYGGTSSEQKL+LQR+FANF Y+
Sbjct: 226 CAFNYSCCCLHSRADLVMYFKHARATLSKKGGIFVMDLYGGTSSEQKLKLQRKFANFKYI 285
Query: 300 WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359
WEQAEFD+I RKTRISLHF L+K+QKKLRHAFSY+WRLWSLPEIKDCLEEAGFRSVHFW+
Sbjct: 286 WEQAEFDVIGRKTRISLHFDLKKQQKKLRHAFSYSWRLWSLPEIKDCLEEAGFRSVHFWM 345
Query: 360 REMPDAREMRNTEGLGGFSRCK 381
R+MPD E+R+ EG G S K
Sbjct: 346 RQMPDTEEIRSIEGFGAGSEVK 367
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501635|ref|XP_004161423.1| PREDICTED: uncharacterized protein LOC101230419 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/382 (63%), Positives = 291/382 (76%), Gaps = 16/382 (4%)
Query: 1 MGKRDKKQQRQQRRDSRRGGRFSNYQEEEEGGYEADYSHHSSLPSSSDHEEAEEETGPEE 60
MGK DKKQ+ R RR +F++ E E G D++ H LP + E EE
Sbjct: 1 MGKGDKKQKHHDRHSRRRDFKFTSEGEVMEDG---DFNSHP-LPQEEEQEVEVEEE---- 52
Query: 61 DFDKADDDRDKNDTNPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQED 120
+++ ++ S D+PSKF LYQQSVQSPKGDISYLQKFFL+YVGGRQP+H QED
Sbjct: 53 -------EQETSNEASSMDIPSKFQLYQQSVQSPKGDISYLQKFFLMYVGGRQPIHFQED 105
Query: 121 FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180
FCGTALLS EWLRSDSRRTAVGLDLDLEAL WCMENN+N++GADG+SRISLF GNVL P
Sbjct: 106 FCGTALLSLEWLRSDSRRTAVGLDLDLEALVWCMENNVNRIGADGFSRISLFLGNVLHPS 165
Query: 181 EAKLVRYEPQ-KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239
EA+LV EP+ L+ N+++E+ + E S +S V++ + + + K+ +L ARDI+
Sbjct: 166 EARLVNPEPEVDLIDNLTMEDSKDNPEASASKSIVKEESASFNDNKYLKRNITLAARDIV 225
Query: 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV 299
CAFNYSCCCLH RADLV+YFKH LSKKGGIFVMDLYGGTSSEQKL+LQR+FANF Y+
Sbjct: 226 CAFNYSCCCLHSRADLVMYFKHARATLSKKGGIFVMDLYGGTSSEQKLKLQRKFANFKYI 285
Query: 300 WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359
WEQAEFD+I RKTRISLHF L+K+QKKLRHAFSY+WRLWSLPEIKDCLEEAGFRSVHFW+
Sbjct: 286 WEQAEFDVIGRKTRISLHFDLKKQQKKLRHAFSYSWRLWSLPEIKDCLEEAGFRSVHFWM 345
Query: 360 REMPDAREMRNTEGLGGFSRCK 381
R+MPD E+R+ EG G S K
Sbjct: 346 RQMPDTEEIRSIEGFGAGSEVK 367
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| TAIR|locus:2038668 | 372 | AT2G27590 "AT2G27590" [Arabido | 0.764 | 0.784 | 0.697 | 7.9e-117 |
| TAIR|locus:2038668 AT2G27590 "AT2G27590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 210/301 (69%), Positives = 254/301 (84%)
Query: 75 NPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS 134
N S+D+PSKFLLYQQSVQSPKGDISYLQKFFL+YVGGRQP H QEDFCGTALLS EWL++
Sbjct: 53 NESSDLPSKFLLYQQSVQSPKGDISYLQKFFLMYVGGRQPFHFQEDFCGTALLSAEWLKT 112
Query: 135 DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194
D+RRTA+GLD DLEALEWCM+NN++K+G+D YSR+SLFHGNVL PLEAK V+ + +L++
Sbjct: 113 DTRRTAIGLDFDLEALEWCMDNNISKLGSDVYSRMSLFHGNVLTPLEAKQVKSKSHELIQ 172
Query: 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254
NISL++ D+ + + + +V ++ D SLP RDI+CAFN+SCCCLHKR++
Sbjct: 173 NISLDDGDDNEDLA--DPSVVESLEKDGPD-------SLPKRDIVCAFNFSCCCLHKRSE 223
Query: 255 LVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRI 314
LV YFK+ ALSKKGGIFVMDLYGG S+E +L+LQR+F NFTY WEQAEFDI+ RKTRI
Sbjct: 224 LVSYFKNARDALSKKGGIFVMDLYGGASAEGQLKLQRKFPNFTYTWEQAEFDILSRKTRI 283
Query: 315 SLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDAREMRNTEGL 374
SLH+HLQK+ +K+RHAFSY+WRLWSLPEIKDC+EEAGF SVHFWLREMPDA EMR T+G
Sbjct: 284 SLHYHLQKQNRKIRHAFSYSWRLWSLPEIKDCMEEAGFSSVHFWLREMPDASEMRRTDGF 343
Query: 375 G 375
G
Sbjct: 344 G 344
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 382 326 0.00087 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 612 (65 KB)
Total size of DFA: 252 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.03u 0.09s 26.12t Elapsed: 00:00:04
Total cpu time: 26.03u 0.09s 26.12t Elapsed: 00:00:04
Start: Mon May 20 21:09:37 2013 End: Mon May 20 21:09:41 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.9 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.76 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.73 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.7 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.68 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.68 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.66 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.64 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.64 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.62 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.61 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.61 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.61 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.57 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.57 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.56 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.55 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.54 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.54 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.54 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.53 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.52 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.52 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.5 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.5 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.48 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.47 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.46 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.46 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.45 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.44 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.42 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.42 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.41 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.41 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.41 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.4 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.4 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.38 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.38 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.37 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.37 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.37 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.37 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.36 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.36 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.34 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.34 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.34 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.32 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.32 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.32 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.31 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.31 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 99.29 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.29 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.28 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.28 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.27 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.27 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.26 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.26 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.26 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.25 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.25 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.25 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.24 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.24 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.24 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.24 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.23 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.23 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.21 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.19 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.19 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.19 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.18 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.18 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.18 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.18 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.17 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.17 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.16 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.13 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.11 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.09 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.08 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.08 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.07 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.05 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.03 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.03 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.03 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.03 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.01 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.01 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.0 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.99 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.99 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.98 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.97 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.97 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.96 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.96 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.96 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.92 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.92 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.92 | |
| PLN02366 | 308 | spermidine synthase | 98.9 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.9 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.9 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.88 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.88 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.85 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.84 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.84 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.83 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.82 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.82 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.81 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.81 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.8 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.79 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.79 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.78 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.78 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.77 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.77 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.75 | |
| PLN02476 | 278 | O-methyltransferase | 98.71 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.71 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.69 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.66 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.65 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.62 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.58 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.58 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.58 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.55 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.55 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.52 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.51 | |
| PLN02823 | 336 | spermine synthase | 98.51 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.51 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.51 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.49 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.45 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.44 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.4 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.4 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.39 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.39 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.37 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.36 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.36 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.33 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.33 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.3 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.29 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.28 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.23 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.22 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.19 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.19 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.15 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.14 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.14 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.12 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.11 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.09 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.07 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.04 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.03 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.99 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.99 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.97 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.96 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.92 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.91 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.91 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.9 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.88 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.86 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.79 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.77 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.77 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.77 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.76 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.71 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.65 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.62 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.61 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.6 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.6 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.52 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.46 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.42 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.38 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.37 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.36 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.36 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.32 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.31 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.31 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.25 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.23 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.21 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.13 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.11 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.07 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.06 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.03 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.93 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.85 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.84 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.81 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.69 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.68 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.6 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.5 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.49 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.49 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.12 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.09 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.02 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.96 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.9 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.77 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.42 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.41 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 95.23 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 95.04 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 95.01 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.9 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.79 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.66 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.66 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.65 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.54 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.36 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.18 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 93.78 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 93.77 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.74 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.67 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 93.25 | |
| PF10017 | 127 | Methyltransf_33: Histidine-specific methyltransfer | 93.12 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 92.9 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 92.51 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.32 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 92.3 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 92.12 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 91.93 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 91.83 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 91.32 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 91.32 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 91.05 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 91.02 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 91.01 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 90.91 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 90.87 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.72 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 89.84 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 89.74 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 87.54 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 87.47 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 87.31 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 86.19 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 85.87 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.75 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 85.69 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 85.23 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 85.1 | |
| TIGR00824 | 116 | EIIA-man PTS system, mannose/fructose/sorbose fami | 84.92 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 84.49 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 84.09 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 83.98 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 83.97 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 82.79 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 82.47 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 80.35 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 80.31 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 80.18 |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=194.88 Aligned_cols=229 Identities=17% Similarity=0.184 Sum_probs=159.7
Q ss_pred CCCCCchH-------HHHHHhhcCChh-----hHHHHHHHHHHhhCC-CCCCcccccCCCccHhHHHHHHhCC-CCeEEE
Q 045407 77 STDMPSKF-------LLYQQSVQSPKG-----DISYLQKFFLIYVGG-RQPLHLQEDFCGTALLSTEWLRSDS-RRTAVG 142 (382)
Q Consensus 77 ~~~~p~~~-------~LYd~~vq~p~~-----Di~yl~~~f~~y~gg-r~p~~LLEl~CGTG~LS~elar~g~-~~tVvG 142 (382)
.+.+|+|+ .||++.++-|+| |+..++......+.. ..+.+|||+|||||+.+..|++... .++|+|
T Consensus 14 ~k~lp~~~~yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~ 93 (301)
T TIGR03438 14 PKTLPPKYFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVP 93 (301)
T ss_pred CCCCCchhcccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEE
Confidence 35778776 478888888876 445666655543311 1235799999999999999999964 368999
Q ss_pred EeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCC
Q 045407 143 LDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASS 222 (382)
Q Consensus 143 VDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (382)
||+|++||+.|+++..+.. ...+|.++++||.++.. +
T Consensus 94 iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~----------------~------------------------ 130 (301)
T TIGR03438 94 IDISADALKESAAALAADY---PQLEVHGICADFTQPLA----------------L------------------------ 130 (301)
T ss_pred EECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhh----------------h------------------------
Confidence 9999999999999854311 23578899999987530 1
Q ss_pred CCCcCccCCCCCCc---cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchh---------------
Q 045407 223 GDNCSKQKSSLPAR---DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSE--------------- 284 (382)
Q Consensus 223 ~~~~~~~~~~~~~f---DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e--------------- 284 (382)
.+.+ +.++++..|.++..++++....|++++++|+ |||+||+++.-.....
T Consensus 131 ----------~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~lig~d~~~~~~~~~~aY~d~~g~t~~ 199 (301)
T TIGR03438 131 ----------PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLIGVDLVKDPAVLEAAYNDAAGVTAA 199 (301)
T ss_pred ----------hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC-CCCEEEEeccCCCCHHHHHHhhcCchhhHHH
Confidence 1122 5666666666666678999999999999999 9999999775211110
Q ss_pred --hhh-H-hhhc----cCCeEEEEeecccccccceEEEEEEEE------eecccceeeeeee-eeE--EecCHHHHHHHH
Q 045407 285 --QKL-R-LQRR----FANFTYVWEQAEFDIIERKTRISLHFH------LQKEQKKLRHAFS-YNW--RLWSLPEIKDCL 347 (382)
Q Consensus 285 --~kl-~-~~R~----~~~~tyvWeq~~fD~~~~~~ri~L~F~------~~~~~~~lr~~fs-y~~--Rlysl~EI~d~L 347 (382)
.++ . ..+. ++...|.|+. .||+..+++++.|.++ +.+....+.+..+ +.+ |-|++++|+.+|
T Consensus 200 F~~N~L~~~n~~l~~~f~~~~~~~~~-~~~~~~~~ie~~l~~~~~~~v~~~~~~~~~~~ge~ih~e~S~ky~~~~~~~~l 278 (301)
T TIGR03438 200 FNLNLLRRLNRELGGDFDPDAFRHRA-FYNEERSRIEMHLVSRRDQTVRLAGLTVRFAAGETIHTENSYKFSLERFAALA 278 (301)
T ss_pred HHHHHHHHHHHHhccCCChHHcEEEE-EEcCCcCeEEEEEEeCCCEEEEECCeEEEecCCCEEeEEEecCCCHHHHHHHH
Confidence 000 0 0111 3445677886 8899999999999884 2211101222222 445 999999999999
Q ss_pred HHcCCcEEEEEec
Q 045407 348 EEAGFRSVHFWLR 360 (382)
Q Consensus 348 eeAGF~~V~v~~r 360 (382)
+.|||+.+++|..
T Consensus 279 ~~aGf~~~~~~~d 291 (301)
T TIGR03438 279 AAAGLRPEQVWTD 291 (301)
T ss_pred HHCCCceeEEEEC
Confidence 9999999999963
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-19 Score=166.01 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=80.8
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
...+.+.+|||+|||||.++..++++ ++..+|+|+|+|++||+.|+++... .+..+|.++++|..+++
T Consensus 43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~----~~~~~i~~v~~da~~lp------- 111 (233)
T PF01209_consen 43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR----EGLQNIEFVQGDAEDLP------- 111 (233)
T ss_dssp HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH----TT--SEEEEE-BTTB---------
T ss_pred cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh----hCCCCeeEEEcCHHHhc-------
Confidence 34444678999999999999999986 5667999999999999999998643 22348999999998887
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
|....||+|++.+ .+..+ .+..+.+++++++|+
T Consensus 112 -------------------------------------------~~d~sfD~v~~~f-glrn~---~d~~~~l~E~~RVLk 144 (233)
T PF01209_consen 112 -------------------------------------------FPDNSFDAVTCSF-GLRNF---PDRERALREMYRVLK 144 (233)
T ss_dssp -------------------------------------------S-TT-EEEEEEES--GGG----SSHHHHHHHHHHHEE
T ss_pred -------------------------------------------CCCCceeEEEHHh-hHHhh---CCHHHHHHHHHHHcC
Confidence 2357899999876 44333 467789999999999
Q ss_pred CCCcEEEE-eccCCCc-hhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeee-EEecCHHHHH
Q 045407 268 KKGGIFVM-DLYGGTS-SEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN-WRLWSLPEIK 344 (382)
Q Consensus 268 ~pGGiFVf-Dl~gg~s-~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~-~Rlysl~EI~ 344 (382)
|||.|++ |+..... ....+ . . +++. .+=|.-..+ +..+...| +....+ .+..+..|+.
T Consensus 145 -PGG~l~ile~~~p~~~~~~~~-~-~------~y~~--~ilP~~g~l-------~~~~~~~Y-~yL~~Si~~f~~~~~~~ 205 (233)
T PF01209_consen 145 -PGGRLVILEFSKPRNPLLRAL-Y-K------FYFK--YILPLIGRL-------LSGDREAY-RYLPESIRRFPSPEELK 205 (233)
T ss_dssp -EEEEEEEEEEEB-SSHHHHHH-H-H------H-----------------------------------------------
T ss_pred -CCeEEEEeeccCCCCchhhce-e-e------eeec--ccccccccc-------cccccccc-ccccccccccccccccc
Confidence 9998876 8874332 21111 0 0 0000 000100000 00110011 111112 2677899999
Q ss_pred HHHHHcCCcEEEE
Q 045407 345 DCLEEAGFRSVHF 357 (382)
Q Consensus 345 d~LeeAGF~~V~v 357 (382)
++|++|||+.|++
T Consensus 206 ~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 206 ELLEEAGFKNVEY 218 (233)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 9999999998875
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-18 Score=138.95 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=86.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC-CCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV-LQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV-~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..|++..+..+|+|||+|++||+.|+++... .....+|.++++|+ ..+.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~------------- 66 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---EGLSDRITFVQGDAEFDPD------------- 66 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---TTTTTTEEEEESCCHGGTT-------------
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---cCCCCCeEEEECccccCcc-------------
Confidence 468999999999999999955567899999999999999999722 12346999999999 2222
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc-chhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN-YSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn-~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. .++||+|++.. ....+++. ++...+++++++.|+ |||+
T Consensus 67 ----~----------------------------------~~~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~-pgG~ 106 (112)
T PF12847_consen 67 ----F----------------------------------LEPFDLVICSGFTLHFLLPL-DERRRVLERIRRLLK-PGGR 106 (112)
T ss_dssp ----T----------------------------------SSCEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEE-EEEE
T ss_pred ----c----------------------------------CCCCCEEEECCCccccccch-hHHHHHHHHHHHhcC-CCcE
Confidence 1 46699999998 33335444 889999999999999 9999
Q ss_pred EEEec
Q 045407 273 FVMDL 277 (382)
Q Consensus 273 FVfDl 277 (382)
||++.
T Consensus 107 lvi~~ 111 (112)
T PF12847_consen 107 LVINT 111 (112)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99964
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=161.36 Aligned_cols=198 Identities=13% Similarity=0.202 Sum_probs=124.1
Q ss_pred HHHHhhc--CChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH--hCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 86 LYQQSVQ--SPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR--SDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 86 LYd~~vq--~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar--~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
.|+..+. -|.|+. ..+..+...++. ...+|||+|||||.++..|++ ..+..+|+|||+|++||++|+++...
T Consensus 27 ~yd~~~~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~ 104 (247)
T PRK15451 27 VFPDMIQRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA 104 (247)
T ss_pred hhhhHHHhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 5655553 344443 223333333221 235799999999999999988 34667899999999999999998532
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.+ ...+|.++++|+.+.+ .+.+|+|
T Consensus 105 -~~--~~~~v~~~~~d~~~~~----------------------------------------------------~~~~D~v 129 (247)
T PRK15451 105 -YK--APTPVDVIEGDIRDIA----------------------------------------------------IENASMV 129 (247)
T ss_pred -cC--CCCCeEEEeCChhhCC----------------------------------------------------CCCCCEE
Confidence 11 1237999999987655 3458988
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCc-hhhhhHhhhccCCeEEEEeecccccccceEEEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTS-SEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLH 317 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s-~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~ 317 (382)
++. .++.++. ..+...+|++++++|+ |||+|++ |.+.... ....+.. +.... ++....+.... +
T Consensus 130 v~~-~~l~~l~-~~~~~~~l~~i~~~Lk-pGG~l~l~e~~~~~~~~~~~~~~-~~~~~---~~~~~g~s~~e--i----- 195 (247)
T PRK15451 130 VLN-FTLQFLE-PSERQALLDKIYQGLN-PGGALVLSEKFSFEDAKVGELLF-NMHHD---FKRANGYSELE--I----- 195 (247)
T ss_pred ehh-hHHHhCC-HHHHHHHHHHHHHhcC-CCCEEEEEEecCCCcchhHHHHH-HHHHH---HHHHcCCCHHH--H-----
Confidence 765 4666665 4667899999999999 9999988 7553221 1111100 00000 01111111100 0
Q ss_pred EEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEecc
Q 045407 318 FHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLRE 361 (382)
Q Consensus 318 F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~ 361 (382)
. ..+.+.....+..|+++..++|++|||+.|..|++.
T Consensus 196 ------~-~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~ 232 (247)
T PRK15451 196 ------S-QKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQC 232 (247)
T ss_pred ------H-HHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHH
Confidence 0 001122233467899999999999999999887753
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=154.98 Aligned_cols=172 Identities=17% Similarity=0.113 Sum_probs=110.0
Q ss_pred CCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
...+|||+|||||.++..+++. ++..+|+|||+|++||++|+++.... ......+|.++++|+.+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~-~~~~~~~i~~~~~d~~~lp----------- 140 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK-AKSCYKNIEWIEGDATDLP----------- 140 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh-hhccCCCeEEEEcccccCC-----------
Confidence 3468999999999999999986 55568999999999999998874210 0112347999999998776
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+....||+|++.+ ++.++. +...++++++++|+ |||
T Consensus 141 ---------------------------------------~~~~sfD~V~~~~-~l~~~~---d~~~~l~ei~rvLk-pGG 176 (261)
T PLN02233 141 ---------------------------------------FDDCYFDAITMGY-GLRNVV---DRLKAMQEMYRVLK-PGS 176 (261)
T ss_pred ---------------------------------------CCCCCEeEEEEec-ccccCC---CHHHHHHHHHHHcC-cCc
Confidence 2246799998754 444444 56788999999999 999
Q ss_pred EEEE-eccCCCc-hhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHH
Q 045407 272 IFVM-DLYGGTS-SEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEE 349 (382)
Q Consensus 272 iFVf-Dl~gg~s-~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Lee 349 (382)
.|++ |+...+. +...+ .... +..++- +..... .... .+..-..+..+.++..|+.++|++
T Consensus 177 ~l~i~d~~~~~~~~~~~~--~~~~--~~~~~~-----~~~~~~--------~~~~-~y~~l~~s~~~f~s~~el~~ll~~ 238 (261)
T PLN02233 177 RVSILDFNKSTQPFTTSM--QEWM--IDNVVV-----PVATGY--------GLAK-EYEYLKSSINEYLTGEELEKLALE 238 (261)
T ss_pred EEEEEECCCCCcHHHHHH--HHHH--Hhhhhh-----HHHHHh--------CChH-HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9877 6653321 11100 0000 000000 000000 0000 000000111268999999999999
Q ss_pred cCCcEEEEE
Q 045407 350 AGFRSVHFW 358 (382)
Q Consensus 350 AGF~~V~v~ 358 (382)
|||+.++.+
T Consensus 239 aGF~~~~~~ 247 (261)
T PLN02233 239 AGFSSAKHY 247 (261)
T ss_pred CCCCEEEEE
Confidence 999999865
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=152.81 Aligned_cols=173 Identities=14% Similarity=0.233 Sum_probs=113.1
Q ss_pred CcccccCCCccHhHHHHHHhC--CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD--SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g--~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.++..+++.. +..+|+|||+|++||+.|+++... . ....++.++++|+.+++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~--~~~~~v~~~~~d~~~~~------------ 119 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-Y--HSEIPVEILCNDIRHVE------------ 119 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-c--CCCCCeEEEECChhhCC------------
Confidence 479999999999999999863 457899999999999999987532 1 11247899999997665
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.+|+|++. +++.|++. ++...+|++++++|+ |||+
T Consensus 120 ----------------------------------------~~~~d~v~~~-~~l~~~~~-~~~~~~l~~i~~~Lk-pgG~ 156 (239)
T TIGR00740 120 ----------------------------------------IKNASMVILN-FTLQFLPP-EDRIALLTKIYEGLN-PNGV 156 (239)
T ss_pred ----------------------------------------CCCCCEEeee-cchhhCCH-HHHHHHHHHHHHhcC-CCeE
Confidence 3558987754 47777654 578899999999999 9999
Q ss_pred EEE-eccCCC-chhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHc
Q 045407 273 FVM-DLYGGT-SSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350 (382)
Q Consensus 273 FVf-Dl~gg~-s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeA 350 (382)
|++ |.+... .......... ... +.....++... +. . + +....-..+.+|++|++.+|++|
T Consensus 157 l~i~d~~~~~~~~~~~~~~~~-~~~---~~~~~g~~~~~--~~--------~---~-~~~~~~~~~~~s~~~~~~~l~~a 218 (239)
T TIGR00740 157 LVLSEKFRFEDTKINHLLIDL-HHQ---FKRANGYSELE--IS--------Q---K-RTALENVMRTDSIETHKARLKNV 218 (239)
T ss_pred EEEeecccCCCHhHHHHHHHH-HHH---HHHHcCCCHHH--HH--------H---H-HHHHhccCCCCCHHHHHHHHHHc
Confidence 999 554322 1111110000 000 00000111100 00 0 0 00111123678999999999999
Q ss_pred CCcEEEEEeccCc
Q 045407 351 GFRSVHFWLREMP 363 (382)
Q Consensus 351 GF~~V~v~~r~~~ 363 (382)
||+.+.++++.+.
T Consensus 219 GF~~~~~~~~~~~ 231 (239)
T TIGR00740 219 GFSHVELWFQCFN 231 (239)
T ss_pred CCchHHHHHHHHh
Confidence 9999888765443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=149.64 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=109.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..|++.| .+|+|||+|++||+.|+++.... ....+|.++++|+.++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~---~~~~~i~~~~~dae~l~-------------- 193 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMD---PVTSTIEYLCTTAEKLA-------------- 193 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc---CcccceeEEecCHHHhh--------------
Confidence 479999999999999999987 47999999999999999874211 01237999999986654
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. ....||+|+|++ ++.++.+. ..+++.+++.|+ |||+|+
T Consensus 194 ---~---------------------------------~~~~FD~Vi~~~-vLeHv~d~---~~~L~~l~r~Lk-PGG~li 232 (322)
T PLN02396 194 ---D---------------------------------EGRKFDAVLSLE-VIEHVANP---AEFCKSLSALTI-PNGATV 232 (322)
T ss_pred ---h---------------------------------ccCCCCEEEEhh-HHHhcCCH---HHHHHHHHHHcC-CCcEEE
Confidence 1 146799999986 88887765 568888999999 999999
Q ss_pred EeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE-EecCHHHHHHHHHHcCCc
Q 045407 275 MDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW-RLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 275 fDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~-Rlysl~EI~d~LeeAGF~ 353 (382)
+...+.+.... ........|+.. . +.++. +.| +.+++.|+..+|+++||+
T Consensus 233 ist~nr~~~~~----~~~i~~~eyi~~---------~--------lp~gt--------h~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 233 LSTINRTMRAY----ASTIVGAEYILR---------W--------LPKGT--------HQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred EEECCcCHHHH----HHhhhhHHHHHh---------c--------CCCCC--------cCccCCCCHHHHHHHHHHcCCe
Confidence 97654332111 000011111100 0 11111 223 589999999999999999
Q ss_pred EEEE
Q 045407 354 SVHF 357 (382)
Q Consensus 354 ~V~v 357 (382)
.+.+
T Consensus 284 i~~~ 287 (322)
T PLN02396 284 VKEM 287 (322)
T ss_pred EEEE
Confidence 9887
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-17 Score=153.64 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=91.0
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..|++....+.|+|+|+|+.||+.|+++...+ +...|+|++||..+++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~----~~~~i~fv~~dAe~LP------------ 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNVEFVVGDAENLP------------ 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc----CccceEEEEechhhCC------------
Confidence 467899999999999999999998889999999999999999997441 2223999999999888
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
|+...||+|++-+ ++-.+ .+..++|+.++++|+ |||.
T Consensus 115 --------------------------------------f~D~sFD~vt~~f-glrnv---~d~~~aL~E~~RVlK-pgG~ 151 (238)
T COG2226 115 --------------------------------------FPDNSFDAVTISF-GLRNV---TDIDKALKEMYRVLK-PGGR 151 (238)
T ss_pred --------------------------------------CCCCccCEEEeee-hhhcC---CCHHHHHHHHHHhhc-CCeE
Confidence 4577899999875 54444 477889999999999 9998
Q ss_pred EEE-eccC
Q 045407 273 FVM-DLYG 279 (382)
Q Consensus 273 FVf-Dl~g 279 (382)
|+. ++..
T Consensus 152 ~~vle~~~ 159 (238)
T COG2226 152 LLVLEFSK 159 (238)
T ss_pred EEEEEcCC
Confidence 877 7764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-16 Score=144.64 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..++++.+..+|+|+|+|+.||+.|+++ ++.++++|+.++.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~----------- 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK----------- 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC-----------
Confidence 335689999999999999999997667899999999999999775 3668899986543
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
..++||+|+|. .++.|+.+ ....++.++++|+ |||
T Consensus 86 ----------------------------------------~~~~fD~v~~~-~~l~~~~d---~~~~l~~~~~~Lk-pgG 120 (255)
T PRK14103 86 ----------------------------------------PKPDTDVVVSN-AALQWVPE---HADLLVRWVDELA-PGS 120 (255)
T ss_pred ----------------------------------------CCCCceEEEEe-hhhhhCCC---HHHHHHHHHHhCC-CCc
Confidence 13579999995 47777764 4778999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
.|++-+.+
T Consensus 121 ~l~~~~~~ 128 (255)
T PRK14103 121 WIAVQVPG 128 (255)
T ss_pred EEEEEcCC
Confidence 99996543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=120.22 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=78.3
Q ss_pred cccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccc
Q 045407 118 QEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNIS 197 (382)
Q Consensus 118 LEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~ 197 (382)
||+|||+|..+..|++.+ ..+|+|+|+|++|+++|+++... ..+.+.++|+.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l~----------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG-GASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDLP----------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHTT-TCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSSS-----------------
T ss_pred CEecCcCCHHHHHHHhcc-CCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhCc-----------------
Confidence 699999999999999993 36899999999999999998632 35669999998887
Q ss_pred cccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 198 LEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
|....||+|++.+ ++.|+ ++...+|++++++|+ |||+|+|
T Consensus 56 ---------------------------------~~~~sfD~v~~~~-~~~~~---~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 56 ---------------------------------FPDNSFDVVFSNS-VLHHL---EDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp ---------------------------------S-TT-EEEEEEES-HGGGS---SHHHHHHHHHHHHEE-EEEEEEE
T ss_pred ---------------------------------ccccccccccccc-ceeec---cCHHHHHHHHHHHcC-cCeEEeC
Confidence 2357899999886 55555 788999999999999 9999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=140.03 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=81.5
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..|++. ++..+|+|+|+|++|++.|+++... .+..++.++++|+.+.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~------------ 109 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD----AGLHNVELVHGNAMELP------------ 109 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh----cCCCceEEEEechhcCC------------
Confidence 358999999999999999987 4556899999999999999988532 12347999999987654
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+...+||+|++.+ ++.++. +....++.+++.|+ |||+
T Consensus 110 --------------------------------------~~~~~fD~V~~~~-~l~~~~---~~~~~l~~~~~~Lk-~gG~ 146 (231)
T TIGR02752 110 --------------------------------------FDDNSFDYVTIGF-GLRNVP---DYMQVLREMYRVVK-PGGK 146 (231)
T ss_pred --------------------------------------CCCCCccEEEEec-ccccCC---CHHHHHHHHHHHcC-cCeE
Confidence 1245799998754 555544 45678999999999 9999
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
+++
T Consensus 147 l~~ 149 (231)
T TIGR02752 147 VVC 149 (231)
T ss_pred EEE
Confidence 987
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=142.35 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=120.7
Q ss_pred hHHHHHHhhc---CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 83 KFLLYQQSVQ---SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 83 ~~~LYd~~vq---~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
.-.+|+..+. =..+.+.....++.. ++-....+|||+|||+|.++..|++.. ..+|+|+|+|+.|++.|+++...
T Consensus 20 ~~~~~e~~~g~~~~~~gg~~~~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 20 GIKAYEFIFGEDYISSGGIEATTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred cchhHHHHhCCCCCCCCchHHHHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc
Confidence 4566777663 123334445555554 333334679999999999999998753 35899999999999999998532
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
..+|.+.++|+.+.+ ++..+||+|
T Consensus 98 ------~~~i~~~~~D~~~~~--------------------------------------------------~~~~~FD~V 121 (263)
T PTZ00098 98 ------KNKIEFEANDILKKD--------------------------------------------------FPENTFDMI 121 (263)
T ss_pred ------CCceEEEECCcccCC--------------------------------------------------CCCCCeEEE
Confidence 247999999987654 224679999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHF 318 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F 318 (382)
++.. ++.|+ ..++...+|++++++|+ |||.|++ |..... . -.|.. .+.. .
T Consensus 122 ~s~~-~l~h~-~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~--------------~-~~~~~-~~~~---~------- 172 (263)
T PTZ00098 122 YSRD-AILHL-SYADKKKLFEKCYKWLK-PNGILLITDYCADK--------------I-ENWDE-EFKA---Y------- 172 (263)
T ss_pred EEhh-hHHhC-CHHHHHHHHHHHHHHcC-CCcEEEEEEecccc--------------c-cCcHH-HHHH---H-------
Confidence 9864 55554 33578899999999999 9999998 432110 0 01221 0000 0
Q ss_pred EeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 319 HLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 319 ~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
+ ... .+.++++.++.++|++|||+.|.+.
T Consensus 173 -~-~~~---------~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 173 -I-KKR---------KYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred -H-Hhc---------CCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 0 000 1246899999999999999998874
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=141.33 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=87.0
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..|++.|. +|+|+|+|++||+.|+++.... + -..++.++++|+.++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~-g--~~~~v~~~~~d~~~l~~---------- 107 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAK-G--VSDNMQFIHCAAQDIAQ---------- 107 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-C--CccceEEEEcCHHHHhh----------
Confidence 3467899999999999999999985 7999999999999999875321 1 12478999999866541
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+....||+|++. .++.|+.++ ..+|+.+++.|+ |||
T Consensus 108 ---------------------------------------~~~~~fD~V~~~-~vl~~~~~~---~~~l~~~~~~Lk-pgG 143 (255)
T PRK11036 108 ---------------------------------------HLETPVDLILFH-AVLEWVADP---KSVLQTLWSVLR-PGG 143 (255)
T ss_pred ---------------------------------------hcCCCCCEEEeh-hHHHhhCCH---HHHHHHHHHHcC-CCe
Confidence 114579999976 477888665 478999999999 999
Q ss_pred EEEEeccCCC
Q 045407 272 IFVMDLYGGT 281 (382)
Q Consensus 272 iFVfDl~gg~ 281 (382)
+|++-.++..
T Consensus 144 ~l~i~~~n~~ 153 (255)
T PRK11036 144 ALSLMFYNAN 153 (255)
T ss_pred EEEEEEECcc
Confidence 9998665543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=146.10 Aligned_cols=192 Identities=17% Similarity=0.093 Sum_probs=119.5
Q ss_pred hHHHHHHhhcCChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 83 KFLLYQQSVQSPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
++.|++-.+ ..+. +..-..+..+++.....+|||+|||||.++..+++.|+. .|+|||.|+.|+..+......
T Consensus 92 ~~~l~~~~~---~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~- 166 (314)
T TIGR00452 92 PFELSGIKI---DSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKL- 166 (314)
T ss_pred CcccccccC---CHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHH-
Confidence 455555442 2233 333333333343333468999999999999999999874 799999999999875432110
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
+. ...++.+..+++.+++ . ...||+|+
T Consensus 167 ~~--~~~~v~~~~~~ie~lp-----------------~----------------------------------~~~FD~V~ 193 (314)
T TIGR00452 167 LD--NDKRAILEPLGIEQLH-----------------E----------------------------------LYAFDTVF 193 (314)
T ss_pred hc--cCCCeEEEECCHHHCC-----------------C----------------------------------CCCcCEEE
Confidence 11 1246788888875554 1 34799999
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEe
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHL 320 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~ 320 (382)
|+. ++.|+. +...+|++++++|+ |||.||+....-... .....+ +..+
T Consensus 194 s~g-vL~H~~---dp~~~L~el~r~Lk-pGG~Lvletl~i~g~-----------~~~~l~------p~~r---------- 241 (314)
T TIGR00452 194 SMG-VLYHRK---SPLEHLKQLKHQLV-IKGELVLETLVIDGD-----------LNTVLV------PKDR---------- 241 (314)
T ss_pred Ecc-hhhccC---CHHHHHHHHHHhcC-CCCEEEEEEEEecCc-----------cccccC------chHH----------
Confidence 986 455544 55778999999999 999999954210000 000000 0000
Q ss_pred ecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEeccCchhhhhccc
Q 045407 321 QKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDAREMRNT 371 (382)
Q Consensus 321 ~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~~~~~~~ 371 (382)
+.+ ....|-++|..+++.+|++|||+.|++..-......|.|.|
T Consensus 242 ------y~k-~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr~t 285 (314)
T TIGR00452 242 ------YAK-MKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPEEQRKT 285 (314)
T ss_pred ------HHh-ccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHHHhhhh
Confidence 000 01113467999999999999999999875444444454444
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=147.40 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||+|.++..|+++. ..+|+|||+|+.|++.|+++.... ....+|.++++|+.+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~---g~~~~v~~~~~D~~~~~------------ 181 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ---GLSDKVSFQVADALNQP------------ 181 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc---CCCCceEEEEcCcccCC------------
Confidence 35689999999999999999874 258999999999999999875321 11237999999998766
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
|..+.||+|++.. ++.++. +...+|++++++|+ |||.
T Consensus 182 --------------------------------------~~~~~FD~V~s~~-~~~h~~---d~~~~l~e~~rvLk-pGG~ 218 (340)
T PLN02244 182 --------------------------------------FEDGQFDLVWSME-SGEHMP---DKRKFVQELARVAA-PGGR 218 (340)
T ss_pred --------------------------------------CCCCCccEEEECC-chhccC---CHHHHHHHHHHHcC-CCcE
Confidence 2356799999975 566665 45789999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
|++-
T Consensus 219 lvi~ 222 (340)
T PLN02244 219 IIIV 222 (340)
T ss_pred EEEE
Confidence 9983
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=123.38 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=79.2
Q ss_pred ccccCCCccHhHHHHHHhC---CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 117 LQEDFCGTALLSTEWLRSD---SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g---~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|||+|||||+.+..+++.. +..+++|||+|++||+.|+++... .+.++.++++|+.+++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-----~~~~~~~~~~D~~~l~~------------ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-----DGPKVRFVQADARDLPF------------ 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-----TTTTSEEEESCTTCHHH------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-----cCCceEEEECCHhHCcc------------
Confidence 6899999999999999884 446899999999999999998643 12378999999988662
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
..++||+|+++.-++.| .+++++...|++++++|+ |||
T Consensus 64 --------------------------------------~~~~~D~v~~~~~~~~~-~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 64 --------------------------------------SDGKFDLVVCSGLSLHH-LSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp --------------------------------------HSSSEEEEEE-TTGGGG-SSHHHHHHHHHHHHHTEE-EEE
T ss_pred --------------------------------------cCCCeeEEEEcCCccCC-CCHHHHHHHHHHHHHHhC-CCC
Confidence 15689999998878888 666899999999999999 898
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=143.16 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=103.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.|+. .|+|||+|+.|+..++..... ++ ...+|.++.+|+.+++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~-~~--~~~~i~~~~~d~e~lp------------- 185 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKL-LG--NDQRAHLLPLGIEQLP------------- 185 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHh-cC--CCCCeEEEeCCHHHCC-------------
Confidence 457999999999999999999974 699999999999765433211 11 1247899999987665
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ...||+|+|+.. +-|+ .+...+|++++++|+ |||.|
T Consensus 186 ----~----------------------------------~~~FD~V~s~~v-l~H~---~dp~~~L~~l~~~Lk-pGG~l 222 (322)
T PRK15068 186 ----A----------------------------------LKAFDTVFSMGV-LYHR---RSPLDHLKQLKDQLV-PGGEL 222 (322)
T ss_pred ----C----------------------------------cCCcCEEEECCh-hhcc---CCHHHHHHHHHHhcC-CCcEE
Confidence 1 456999999763 3343 456789999999999 99999
Q ss_pred EEecc--CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 274 VMDLY--GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 274 VfDl~--gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|++.. .+.. ....++.. .|. . +.-.|-+.|+.++..+|++||
T Consensus 223 vl~~~~i~~~~------------~~~l~p~~-~y~-------------------~----~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 223 VLETLVIDGDE------------NTVLVPGD-RYA-------------------K----MRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred EEEEEEecCCC------------ccccCchh-HHh-------------------c----CccceeCCCHHHHHHHHHHcC
Confidence 99742 1100 00111110 000 0 001123679999999999999
Q ss_pred CcEEEEE
Q 045407 352 FRSVHFW 358 (382)
Q Consensus 352 F~~V~v~ 358 (382)
|+.+++.
T Consensus 267 F~~i~~~ 273 (322)
T PRK15068 267 FKDVRIV 273 (322)
T ss_pred CceEEEE
Confidence 9999885
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-15 Score=134.28 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=81.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..|+++|. +|+|+|+|++||+.|+++... .+...|.+..+|+.+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~----~~~~~v~~~~~d~~~~~------------- 91 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAA----ENLDNLHTAVVDLNNLT------------- 91 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHH----cCCCcceEEecChhhCC-------------
Confidence 46799999999999999999985 799999999999999987432 12235788888876554
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .++||+|+|.+ +++| ..++++..+|+.++++|+ |||++
T Consensus 92 ----~----------------------------------~~~fD~I~~~~-~~~~-~~~~~~~~~l~~i~~~Lk-pgG~~ 130 (197)
T PRK11207 92 ----F----------------------------------DGEYDFILSTV-VLMF-LEAKTIPGLIANMQRCTK-PGGYN 130 (197)
T ss_pred ----c----------------------------------CCCcCEEEEec-chhh-CCHHHHHHHHHHHHHHcC-CCcEE
Confidence 1 35699999875 4554 456789999999999999 99986
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 131 ~~ 132 (197)
T PRK11207 131 LI 132 (197)
T ss_pred EE
Confidence 54
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=132.67 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=106.7
Q ss_pred CCCCcccccCCCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhccc
Q 045407 112 RQPLHLQEDFCGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
..+.+|||+|||||.++..|++ .|+..+|+|||+|++||+.|+++... .++.+.++++..++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l~------- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDELV------- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEeccccc-------
Confidence 3456899999999999988875 36656899999999999999887421 23556665544333
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
+....||+|+|.. ++.|+.+ +++...|+.+++.|+
T Consensus 125 -------------------------------------------~~~~~fD~V~~~~-~lhh~~d-~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 125 -------------------------------------------AEGERFDVVTSNH-FLHHLDD-AEVVRLLADSAALAR 159 (232)
T ss_pred -------------------------------------------ccCCCccEEEECC-eeecCCh-HHHHHHHHHHHHhcC
Confidence 0145799999975 7888765 468899999999987
Q ss_pred CCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHH
Q 045407 268 KKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCL 347 (382)
Q Consensus 268 ~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~L 347 (382)
|++++.|+..+..... +......+- . .. ..++ .++ .....|.|+.+|+.++|
T Consensus 160 --~~~~i~dl~~~~~~~~-~~~~~~~~~---~-~~-------~~~~-------~d~-------~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 160 --RLVLHNDLIRSRLAYA-LFWAGTRLL---S-RS-------SFVH-------TDG-------LLSVRRSYTPAELAALA 211 (232)
T ss_pred --eeEEEeccccCHHHHH-HHHHHHHHh---c-cC-------ceee-------ccc-------hHHHHhhcCHHHHHHHh
Confidence 8888889875421111 000000000 0 00 0000 011 11123899999999999
Q ss_pred HHcCCcEEEEEe
Q 045407 348 EEAGFRSVHFWL 359 (382)
Q Consensus 348 eeAGF~~V~v~~ 359 (382)
++ ||+.+..|+
T Consensus 212 ~~-Gf~~~~~~~ 222 (232)
T PRK06202 212 PQ-GWRVERQWP 222 (232)
T ss_pred hC-CCeEEeccc
Confidence 99 999888774
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=122.24 Aligned_cols=139 Identities=21% Similarity=0.265 Sum_probs=97.3
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||+|.++..|++.|. +++|+|+|+.|+++ .+ .....+... .+.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~---~~---------~~~~~~~~~--~~~------------ 73 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK---RN---------VVFDNFDAQ--DPP------------ 73 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH---TT---------SEEEEEECH--THH------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh---hh---------hhhhhhhhh--hhh------------
Confidence 356799999999999999999986 79999999999988 21 112222222 221
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+....||+|+|+ .++.|+. +...+++++++.|+ |||+
T Consensus 74 --------------------------------------~~~~~fD~i~~~-~~l~~~~---d~~~~l~~l~~~Lk-pgG~ 110 (161)
T PF13489_consen 74 --------------------------------------FPDGSFDLIICN-DVLEHLP---DPEEFLKELSRLLK-PGGY 110 (161)
T ss_dssp --------------------------------------CHSSSEEEEEEE-SSGGGSS---HHHHHHHHHHHCEE-EEEE
T ss_pred --------------------------------------ccccchhhHhhH-HHHhhcc---cHHHHHHHHHHhcC-CCCE
Confidence 114679999999 5888887 57899999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
+++.......... +.+.. |.. .. + .+ -+...|++.+|+.+|++|||
T Consensus 111 l~~~~~~~~~~~~-----~~~~~----~~~-~~-~--------------~~---------~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 111 LVISDPNRDDPSP-----RSFLK----WRY-DR-P--------------YG---------GHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp EEEEEEBTTSHHH-----HHHHH----CCG-TC-H--------------HT---------TTTEEBBHHHHHHHHHHTTE
T ss_pred EEEEEcCCcchhh-----hHHHh----cCC-cC-c--------------cC---------ceeccCCHHHHHHHHHHCCC
Confidence 9997765322111 00001 221 00 0 00 11268899999999999999
Q ss_pred cEEE
Q 045407 353 RSVH 356 (382)
Q Consensus 353 ~~V~ 356 (382)
+.|+
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=133.11 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=83.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..++++.+..+|+++|+ ++|++.|+++... .+ -..||.++++|+.+.+
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~g--l~~rv~~~~~d~~~~~------------- 212 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-KG--VADRMRGIAVDIYKES------------- 212 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh-CC--ccceEEEEecCccCCC-------------
Confidence 46899999999999999999999889999998 7899999987533 11 1248999999987544
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.+.+|+|+..+. .|..+.+.....|++++++|+ |||.+
T Consensus 213 ---------------------------------------~~~~D~v~~~~~--lh~~~~~~~~~il~~~~~~L~-pgG~l 250 (306)
T TIGR02716 213 ---------------------------------------YPEADAVLFCRI--LYSANEQLSTIMCKKAFDAMR-SGGRL 250 (306)
T ss_pred ---------------------------------------CCCCCEEEeEhh--hhcCChHHHHHHHHHHHHhcC-CCCEE
Confidence 345799876552 233355677899999999999 99999
Q ss_pred EE-ecc
Q 045407 274 VM-DLY 278 (382)
Q Consensus 274 Vf-Dl~ 278 (382)
++ |+.
T Consensus 251 ~i~d~~ 256 (306)
T TIGR02716 251 LILDMV 256 (306)
T ss_pred EEEEec
Confidence 76 753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-14 Score=133.20 Aligned_cols=102 Identities=15% Similarity=0.219 Sum_probs=82.1
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..|++.| .+|+|+|+|++||+.|+++.. .+.++++|+..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~~----------- 98 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESLP----------- 98 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccCc-----------
Confidence 345689999999999999999887 479999999999999998741 2467899987655
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+....||+|++.. ++.|+. ++..+|++++++|+ |||
T Consensus 99 ---------------------------------------~~~~~fD~V~s~~-~l~~~~---d~~~~l~~~~~~Lk-~gG 134 (251)
T PRK10258 99 ---------------------------------------LATATFDLAWSNL-AVQWCG---NLSTALRELYRVVR-PGG 134 (251)
T ss_pred ---------------------------------------CCCCcEEEEEECc-hhhhcC---CHHHHHHHHHHHcC-CCe
Confidence 1245799999764 565544 56788999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
+|+|=..+
T Consensus 135 ~l~~~~~~ 142 (251)
T PRK10258 135 VVAFTTLV 142 (251)
T ss_pred EEEEEeCC
Confidence 99996554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=143.48 Aligned_cols=147 Identities=14% Similarity=0.199 Sum_probs=105.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..+++.. ..+|+|+|+|++||+.|+++... ...++.++++|+.+++
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~------------- 327 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT------------- 327 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-------------
Confidence 4589999999999999998864 35899999999999999987521 2247999999987765
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
++..+||+|+|.. ++.|+.+ ...+|+.++++|+ |||.|
T Consensus 328 -------------------------------------~~~~~fD~I~s~~-~l~h~~d---~~~~l~~~~r~Lk-pgG~l 365 (475)
T PLN02336 328 -------------------------------------YPDNSFDVIYSRD-TILHIQD---KPALFRSFFKWLK-PGGKV 365 (475)
T ss_pred -------------------------------------CCCCCEEEEEECC-cccccCC---HHHHHHHHHHHcC-CCeEE
Confidence 1245799999975 6777764 4678999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++.-+.-.... +.- .|.. .+. ...+.++++.++.++|++|||.
T Consensus 366 ~i~~~~~~~~~---------~~~--~~~~-----------------------~~~---~~g~~~~~~~~~~~~l~~aGF~ 408 (475)
T PLN02336 366 LISDYCRSPGT---------PSP--EFAE-----------------------YIK---QRGYDLHDVQAYGQMLKDAGFD 408 (475)
T ss_pred EEEEeccCCCC---------CcH--HHHH-----------------------HHH---hcCCCCCCHHHHHHHHHHCCCe
Confidence 98433100000 000 0000 000 0112578999999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
.+.+.
T Consensus 409 ~i~~~ 413 (475)
T PLN02336 409 DVIAE 413 (475)
T ss_pred eeeee
Confidence 98663
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=123.30 Aligned_cols=106 Identities=19% Similarity=0.300 Sum_probs=83.1
Q ss_pred CCcccccCCCccHhHHHHH-HhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWL-RSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~ela-r~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..|+ +.++..+++|||+|++||+.|+++... .+..++.|+++|+.+++.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~----~~~~ni~~~~~d~~~l~~----------- 68 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE----LGLDNIEFIQGDIEDLPQ----------- 68 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH----TTSTTEEEEESBTTCGCG-----------
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc----ccccccceEEeehhcccc-----------
Confidence 4579999999999999999 567778999999999999999997432 233479999999988541
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. +. ..||+|++.... .++ .+....|+.+.+.|+ +||+
T Consensus 69 ------------------------------------~-~~-~~~D~I~~~~~l-~~~---~~~~~~l~~~~~~lk-~~G~ 105 (152)
T PF13847_consen 69 ------------------------------------E-LE-EKFDIIISNGVL-HHF---PDPEKVLKNIIRLLK-PGGI 105 (152)
T ss_dssp ------------------------------------C-SS-TTEEEEEEESTG-GGT---SHHHHHHHHHHHHEE-EEEE
T ss_pred ------------------------------------c-cC-CCeeEEEEcCch-hhc---cCHHHHHHHHHHHcC-CCcE
Confidence 0 11 679999998633 443 455688999999999 8999
Q ss_pred EEEec
Q 045407 273 FVMDL 277 (382)
Q Consensus 273 FVfDl 277 (382)
|++-.
T Consensus 106 ~i~~~ 110 (152)
T PF13847_consen 106 LIISD 110 (152)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99843
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=140.76 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=81.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.-+..+|+|+|+|++||+.|+++.. ..++.++++|+.+++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp------------- 173 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLP------------- 173 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCC-------------
Confidence 357999999999999999987544689999999999999998741 136889999987655
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....||+|++. .+++|+.+. ...|++++++|+ |||.|
T Consensus 174 -------------------------------------~~~~sFDvVIs~-~~L~~~~d~---~~~L~e~~rvLk-PGG~L 211 (340)
T PLN02490 174 -------------------------------------FPTDYADRYVSA-GSIEYWPDP---QRGIKEAYRVLK-IGGKA 211 (340)
T ss_pred -------------------------------------CCCCceeEEEEc-ChhhhCCCH---HHHHHHHHHhcC-CCcEE
Confidence 124579999986 477777654 468999999999 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 212 vI 213 (340)
T PLN02490 212 CL 213 (340)
T ss_pred EE
Confidence 77
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=130.33 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=104.1
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||..+..+++. ++..+|+|+|+|++||++|+++... .+..++.++++|+.+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~----~g~~~v~~~~~d~~~l~------------ 141 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK----AGYTNVEFRLGEIEALP------------ 141 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH----cCCCCEEEEEcchhhCC------------
Confidence 357999999999988877765 5656799999999999999987422 12347899999986655
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ ....||+|++.+ +++++. +...+|+.++++|+ |||+
T Consensus 142 -----~---------------------------------~~~~fD~Vi~~~-v~~~~~---d~~~~l~~~~r~Lk-pGG~ 178 (272)
T PRK11873 142 -----V---------------------------------ADNSVDVIISNC-VINLSP---DKERVFKEAFRVLK-PGGR 178 (272)
T ss_pred -----C---------------------------------CCCceeEEEEcC-cccCCC---CHHHHHHHHHHHcC-CCcE
Confidence 1 245799998764 455443 45678999999999 9999
Q ss_pred EEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 273 FVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 273 FVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|++ |+.........+. . ... +|. .+.-..++..++.++|+++|
T Consensus 179 l~i~~~~~~~~~~~~~~--~---~~~-~~~------------------------------~~~~~~~~~~e~~~~l~~aG 222 (272)
T PRK11873 179 FAISDVVLRGELPEEIR--N---DAE-LYA------------------------------GCVAGALQEEEYLAMLAEAG 222 (272)
T ss_pred EEEEEeeccCCCCHHHH--H---hHH-HHh------------------------------ccccCCCCHHHHHHHHHHCC
Confidence 998 5543211100000 0 000 010 00113567889999999999
Q ss_pred CcEEEEEe
Q 045407 352 FRSVHFWL 359 (382)
Q Consensus 352 F~~V~v~~ 359 (382)
|..+.+..
T Consensus 223 f~~v~i~~ 230 (272)
T PRK11873 223 FVDITIQP 230 (272)
T ss_pred CCceEEEe
Confidence 99988743
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-14 Score=127.35 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=78.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+|||+|||||.++..++++|. +|+|+|+|+.||++|+++... .+..+.+.++|+..++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~------------- 90 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAR-----ENLPLRTDAYDINAAA------------- 90 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHH-----hCCCceeEeccchhcc-------------
Confidence 56899999999999999999985 799999999999999887422 1224667777764433
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .+.||+|++.. ++.+++ .+++..+++.++++|+ |||+|
T Consensus 91 ----~----------------------------------~~~fD~I~~~~-~~~~~~-~~~~~~~l~~~~~~Lk-pgG~l 129 (195)
T TIGR00477 91 ----L----------------------------------NEDYDFIFSTV-VFMFLQ-AGRVPEIIANMQAHTR-PGGYN 129 (195)
T ss_pred ----c----------------------------------cCCCCEEEEec-ccccCC-HHHHHHHHHHHHHHhC-CCcEE
Confidence 1 34699998865 455554 4688999999999999 99985
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 130 li 131 (195)
T TIGR00477 130 LI 131 (195)
T ss_pred EE
Confidence 44
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=125.20 Aligned_cols=141 Identities=20% Similarity=0.228 Sum_probs=102.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|||+|||+|.++..+++..+..+|+|+|+|++|+++|+++... .+ -..+++++++|+...+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~-~g--l~~~i~~~~~d~~~~~--------------- 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA-LG--LQGRIRIFYRDSAKDP--------------- 63 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-cC--CCcceEEEecccccCC---------------
Confidence 58999999999999999987667899999999999999997532 11 1247899999974433
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+ .++||+|++.+ ++.++. +...+|+.+++.|+ |||+|++
T Consensus 64 --~----------------------------------~~~fD~I~~~~-~l~~~~---~~~~~l~~~~~~Lk-pgG~l~i 102 (224)
T smart00828 64 --F----------------------------------PDTYDLVFGFE-VIHHIK---DKMDLFSNISRHLK-DGGHLVL 102 (224)
T ss_pred --C----------------------------------CCCCCEeehHH-HHHhCC---CHHHHHHHHHHHcC-CCCEEEE
Confidence 1 34699999865 555554 46789999999999 9999998
Q ss_pred -eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcE
Q 045407 276 -DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRS 354 (382)
Q Consensus 276 -Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~ 354 (382)
|+.. +. |.. ... . ... ..+++..++.++|+++||+.
T Consensus 103 ~~~~~---------------~~---~~~-----~~~------------~--~~~------~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 103 ADFIA---------------NL---LSA-----IEH------------E--ETT------SYLVTREEWAELLARNNLRV 139 (224)
T ss_pred EEccc---------------cc---Ccc-----ccc------------c--ccc------cccCCHHHHHHHHHHCCCeE
Confidence 3321 00 110 000 0 000 01678999999999999999
Q ss_pred EEEE
Q 045407 355 VHFW 358 (382)
Q Consensus 355 V~v~ 358 (382)
+.+.
T Consensus 140 ~~~~ 143 (224)
T smart00828 140 VEGV 143 (224)
T ss_pred EEeE
Confidence 8763
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=122.25 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
..+...++.. .....+.+|||+|||+|.++..|++.++. .+++|+|+++.++++|+++.. ...++.++++|+
T Consensus 25 ~~~~~~~~~~-~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~ 97 (223)
T TIGR01934 25 RLWRRRAVKL-IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADA 97 (223)
T ss_pred HHHHHHHHHH-hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecch
Confidence 3444444443 22234578999999999999999999874 589999999999999998742 234789999998
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
.+.+ +..++||+|++.. ++.+ ..+..
T Consensus 98 ~~~~--------------------------------------------------~~~~~~D~i~~~~-~~~~---~~~~~ 123 (223)
T TIGR01934 98 EALP--------------------------------------------------FEDNSFDAVTIAF-GLRN---VTDIQ 123 (223)
T ss_pred hcCC--------------------------------------------------CCCCcEEEEEEee-eeCC---cccHH
Confidence 7654 1235799998754 3333 35677
Q ss_pred HHHHHHHhhccCCCcEEEE-ecc
Q 045407 257 LYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
..++.+++.|+ |||+|++ +..
T Consensus 124 ~~l~~~~~~L~-~gG~l~~~~~~ 145 (223)
T TIGR01934 124 KALREMYRVLK-PGGRLVILEFS 145 (223)
T ss_pred HHHHHHHHHcC-CCcEEEEEEec
Confidence 89999999999 9999987 443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=122.49 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=103.1
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..|++.+. +|+|+|+|++|++.|+++..... ...++.+.++|+.+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~------------ 117 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSLC------------ 117 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhCC------------
Confidence 356899999999999999998874 79999999999999999863311 1136889998874432
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
++||+|++.+ ++.|+. ++++...++++++.++ +|++
T Consensus 118 -----------------------------------------~~fD~ii~~~-~l~~~~-~~~~~~~l~~i~~~~~-~~~~ 153 (219)
T TIGR02021 118 -----------------------------------------GEFDIVVCMD-VLIHYP-ASDMAKALGHLASLTK-ERVI 153 (219)
T ss_pred -----------------------------------------CCcCEEEEhh-HHHhCC-HHHHHHHHHHHHHHhC-CCEE
Confidence 5699999875 555554 4678899999998887 6666
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
+.+ .+.+.... ..+.... .|.. .. ....++.+++++++.+|+++||
T Consensus 154 i~~--~~~~~~~~---~~~~~~~---~~~~--------------------~~------~~~~~~~~~~~~~~~~l~~~Gf 199 (219)
T TIGR02021 154 FTF--APKTAWLA---FLKMIGE---LFPG--------------------SS------RATSAYLHPMTDLERALGELGW 199 (219)
T ss_pred EEE--CCCchHHH---HHHHHHh---hCcC--------------------cc------cccceEEecHHHHHHHHHHcCc
Confidence 554 22222111 1110000 0110 00 0112457899999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.+++-
T Consensus 200 ~v~~~~ 205 (219)
T TIGR02021 200 KIVREG 205 (219)
T ss_pred eeeeee
Confidence 998863
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=124.83 Aligned_cols=120 Identities=10% Similarity=0.132 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG 174 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g 174 (382)
...+.++.+++.. . ..+..|||+|||||.++..|++..+..+++|||+|++||+.|+++. .++.++++
T Consensus 28 ~~~~~~~~~~l~~-~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~ 95 (204)
T TIGR03587 28 AAKLAMFARALNR-L--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQG 95 (204)
T ss_pred HHHHHHHHHHHHh-c--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEe
Confidence 3455677777654 2 2255799999999999999998844468999999999999999874 14678899
Q ss_pred cCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH
Q 045407 175 NVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254 (382)
Q Consensus 175 DV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d 254 (382)
|+.++. ...+||+|++. .++.|+. +++
T Consensus 96 d~~~~~---------------------------------------------------~~~sfD~V~~~-~vL~hl~-p~~ 122 (204)
T TIGR03587 96 SLFDPF---------------------------------------------------KDNFFDLVLTK-GVLIHIN-PDN 122 (204)
T ss_pred eccCCC---------------------------------------------------CCCCEEEEEEC-ChhhhCC-HHH
Confidence 987632 25679999974 5777774 789
Q ss_pred HHHHHHHHHhhccCCCcEEEEeccCCC
Q 045407 255 LVLYFKHVLHALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVfDl~gg~ 281 (382)
+..+++.++++++ +-++|.++++..
T Consensus 123 ~~~~l~el~r~~~--~~v~i~e~~~~~ 147 (204)
T TIGR03587 123 LPTAYRELYRCSN--RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHhhcC--cEEEEEEeeCCC
Confidence 9999999999986 677777887543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-13 Score=122.00 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..|++.++ ..+++|+|+|+.|++.|+++.... ....++.++++|+.++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~~~~~~~d~~~~~------------ 116 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL---GLSGNVEFVQGDAEALP------------ 116 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc---ccccCeEEEecccccCC------------
Confidence 46899999999999999999886 468999999999999999975221 01246889999986654
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+..+.||+|++.+ ++.+ ..++...++.++..|+ |||+
T Consensus 117 --------------------------------------~~~~~~D~I~~~~-~l~~---~~~~~~~l~~~~~~L~-~gG~ 153 (239)
T PRK00216 117 --------------------------------------FPDNSFDAVTIAF-GLRN---VPDIDKALREMYRVLK-PGGR 153 (239)
T ss_pred --------------------------------------CCCCCccEEEEec-cccc---CCCHHHHHHHHHHhcc-CCcE
Confidence 1245799998754 3333 3567788999999999 9998
Q ss_pred EEE-ecc
Q 045407 273 FVM-DLY 278 (382)
Q Consensus 273 FVf-Dl~ 278 (382)
+++ ++.
T Consensus 154 li~~~~~ 160 (239)
T PRK00216 154 LVILEFS 160 (239)
T ss_pred EEEEEec
Confidence 876 654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=121.28 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=83.8
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
..-..+.+|||+|||||.++..+++.. +..+|+|+|+|+.+++.|+++. . ....++.++++|+.+++
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~-~----~~~~~~~~~~~d~~~~~------- 82 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA-A----GLGPNVEFVRGDADGLP------- 82 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHh-h----CCCCceEEEecccccCC-------
Confidence 333335689999999999999999875 5568999999999999999872 1 12347889999986554
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
+..++||+|++.+ ++.++. +...+|+++++.|+
T Consensus 83 -------------------------------------------~~~~~~D~v~~~~-~~~~~~---~~~~~l~~~~~~L~ 115 (241)
T PRK08317 83 -------------------------------------------FPDGSFDAVRSDR-VLQHLE---DPARALAEIARVLR 115 (241)
T ss_pred -------------------------------------------CCCCCceEEEEec-hhhccC---CHHHHHHHHHHHhc
Confidence 1246799999875 555554 45778999999999
Q ss_pred CCCcEEEEe
Q 045407 268 KKGGIFVMD 276 (382)
Q Consensus 268 ~pGGiFVfD 276 (382)
|||.+++-
T Consensus 116 -~gG~l~~~ 123 (241)
T PRK08317 116 -PGGRVVVL 123 (241)
T ss_pred -CCcEEEEE
Confidence 99999874
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=126.58 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+|+|||+|+.|++.|+++. .++.++.+|+.++.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~------------- 89 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ------------- 89 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC-------------
Confidence 46899999999999999999876678999999999999999874 25788999986543
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ..+||+|++.. ++.|+.+ ...+|+.++++|+ |||+|
T Consensus 90 ----~----------------------------------~~~fD~v~~~~-~l~~~~d---~~~~l~~~~~~Lk-pgG~~ 126 (258)
T PRK01683 90 ----P----------------------------------PQALDLIFANA-SLQWLPD---HLELFPRLVSLLA-PGGVL 126 (258)
T ss_pred ----C----------------------------------CCCccEEEEcc-ChhhCCC---HHHHHHHHHHhcC-CCcEE
Confidence 1 35799999864 7777654 5689999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++-+-
T Consensus 127 ~~~~~ 131 (258)
T PRK01683 127 AVQMP 131 (258)
T ss_pred EEECC
Confidence 99653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-15 Score=117.92 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=62.5
Q ss_pred cccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccc
Q 045407 118 QEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNIS 197 (382)
Q Consensus 118 LEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~ 197 (382)
||+|||||.++..+++..+..+++|+|+|+.||+.|+++... ........+..+..+...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~~~---------------- 60 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE----LGNDNFERLRFDVLDLFD---------------- 60 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH----CT---EEEEE--SSS-------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh----cCCcceeEEEeecCChhh----------------
Confidence 699999999999999996667899999999999887777533 222234445444443331
Q ss_pred cccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 198 LEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ....+||+|++.+ ++.|+ +++..+++++++.|+ |||+|
T Consensus 61 ~--------------------------------~~~~~fD~V~~~~-vl~~l---~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 61 Y--------------------------------DPPESFDLVVASN-VLHHL---EDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp C--------------------------------CC----SEEEEE--TTS-----S-HHHHHHHHTTT-T-SS-EE
T ss_pred c--------------------------------ccccccceehhhh-hHhhh---hhHHHHHHHHHHHcC-CCCCC
Confidence 0 0024899999995 77777 688899999999999 99986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=126.28 Aligned_cols=103 Identities=9% Similarity=0.050 Sum_probs=73.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC-CCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA-DGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~-d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||.++..|++.|. +|+|+|+|+.||++|+++....... .+..++.|.++|+.++
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------------- 209 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------------- 209 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-------------
Confidence 45799999999999999999984 7999999999999999985331100 0123577888886432
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.||+|+|+. ++.|+.+ +.+...++++.. |. +||+
T Consensus 210 ----------------------------------------~~~fD~Vv~~~-vL~H~p~-~~~~~ll~~l~~-l~-~g~l 245 (315)
T PLN02585 210 ----------------------------------------SGKYDTVTCLD-VLIHYPQ-DKADGMIAHLAS-LA-EKRL 245 (315)
T ss_pred ----------------------------------------CCCcCEEEEcC-EEEecCH-HHHHHHHHHHHh-hc-CCEE
Confidence 25699999875 4444443 455667777764 56 6777
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
+|.
T Consensus 246 iIs 248 (315)
T PLN02585 246 IIS 248 (315)
T ss_pred EEE
Confidence 664
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=105.59 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=79.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|+|+|||+|.++..++++.+..+|+|+|+|+.|+++|+++... . +..++.++.+|+.....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~---~~~~~~~~~~~~~~~~~------------- 83 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR-F---GVSNIVIVEGDAPEALE------------- 83 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH-h---CCCceEEEeccccccCh-------------
Confidence 479999999999999999987657899999999999999987422 1 12368888888654220
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
...++||+|++... ......+++.+++.|+ |||.|+
T Consensus 84 ------------------------------------~~~~~~D~v~~~~~-------~~~~~~~l~~~~~~Lk-~gG~li 119 (124)
T TIGR02469 84 ------------------------------------DSLPEPDRVFIGGS-------GGLLQEILEAIWRRLR-PGGRIV 119 (124)
T ss_pred ------------------------------------hhcCCCCEEEECCc-------chhHHHHHHHHHHHcC-CCCEEE
Confidence 00357999998541 2345689999999999 999999
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+.++
T Consensus 120 ~~~~ 123 (124)
T TIGR02469 120 LNAI 123 (124)
T ss_pred EEec
Confidence 9875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-13 Score=129.05 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=81.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+|||+|||+|+++..+++.|. +|+|+|+|+.||+.|+++... .+.++.+..+|+..+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~-----~~l~v~~~~~D~~~~~------------- 180 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEK-----ENLNIRTGLYDINSAS------------- 180 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHH-----cCCceEEEEechhccc-------------
Confidence 45799999999999999999985 799999999999999987532 1236888888875544
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .+.||+|++.. ++.++ +++++..+++.+.++|+ |||++
T Consensus 181 ----~----------------------------------~~~fD~I~~~~-vl~~l-~~~~~~~~l~~~~~~Lk-pgG~~ 219 (287)
T PRK12335 181 ----I----------------------------------QEEYDFILSTV-VLMFL-NRERIPAIIKNMQEHTN-PGGYN 219 (287)
T ss_pred ----c----------------------------------cCCccEEEEcc-hhhhC-CHHHHHHHHHHHHHhcC-CCcEE
Confidence 1 35799999986 55554 56789999999999999 99996
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 220 l~ 221 (287)
T PRK12335 220 LI 221 (287)
T ss_pred EE
Confidence 65
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=120.34 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=81.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+|+|+|+|++|+++|+++... . +..++.++++|+.++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~-~---~l~~i~~~~~d~~~~~------------- 108 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE-L---GLKNVTVVHGRAEEFG------------- 108 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-c---CCCCEEEEeccHhhCC-------------
Confidence 4579999999999999999877778999999999999999987533 2 2235999999986654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. .++||+|+|.. + ..+..+++.+++.|+ |||+|
T Consensus 109 -------------------------------------~-~~~fDlV~~~~-----~---~~~~~~l~~~~~~Lk-pGG~l 141 (187)
T PRK00107 109 -------------------------------------Q-EEKFDVVTSRA-----V---ASLSDLVELCLPLLK-PGGRF 141 (187)
T ss_pred -------------------------------------C-CCCccEEEEcc-----c---cCHHHHHHHHHHhcC-CCeEE
Confidence 1 35799999854 1 356778999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++-..
T Consensus 142 v~~~~ 146 (187)
T PRK00107 142 LALKG 146 (187)
T ss_pred EEEeC
Confidence 99654
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-13 Score=120.84 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=79.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.++..+|+|||+|++|++.|+++... . +..++.++++|+.++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-~---~~~~i~~i~~d~~~~~------------- 105 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-L---GLNNVEIVNGRAEDFQ------------- 105 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-h---CCCCeEEEecchhhcc-------------
Confidence 4579999999999999999988778899999999999999887422 2 2236999999986643
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. .++||+|+|.. ++ ++...++.+++.|+ |||+|
T Consensus 106 ----~----------------------------------~~~fD~I~s~~-----~~---~~~~~~~~~~~~Lk-pgG~l 138 (181)
T TIGR00138 106 ----H----------------------------------EEQFDVITSRA-----LA---SLNVLLELTLNLLK-VGGYF 138 (181)
T ss_pred ----c----------------------------------cCCccEEEehh-----hh---CHHHHHHHHHHhcC-CCCEE
Confidence 1 36799998853 33 34557788899999 99999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
++-.
T Consensus 139 vi~~ 142 (181)
T TIGR00138 139 LAYK 142 (181)
T ss_pred EEEc
Confidence 9864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-13 Score=128.32 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhCCCCC-------CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC--Ccc
Q 045407 98 ISYLQKFFLIYVGGRQP-------LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG--YSR 168 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p-------~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~--~~R 168 (382)
..|+..-+++.+....| ..|||.|||||+||..|||.|. +|+|||++.+|++.|+++.-......+ .-|
T Consensus 67 l~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~ 144 (282)
T KOG1270|consen 67 LPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPVLEGAIAYR 144 (282)
T ss_pred hhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCchhcccccee
Confidence 35666666554422222 3599999999999999999995 799999999999999999322100000 115
Q ss_pred eEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc
Q 045407 169 ISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC 248 (382)
Q Consensus 169 I~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y 248 (382)
+++.+.++.... +.||+|+|+-- +-+
T Consensus 145 l~~~~~~~E~~~-----------------------------------------------------~~fDaVvcsev-leH 170 (282)
T KOG1270|consen 145 LEYEDTDVEGLT-----------------------------------------------------GKFDAVVCSEV-LEH 170 (282)
T ss_pred eehhhcchhhcc-----------------------------------------------------cccceeeeHHH-HHH
Confidence 777777664332 55999999973 332
Q ss_pred cCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeeccccee
Q 045407 249 LHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKL 327 (382)
Q Consensus 249 L~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~l 327 (382)
-+++...+++..+.|+ |||.+++ +++-+-.+ .+++ +| ..++..+. +++|.
T Consensus 171 ---V~dp~~~l~~l~~~lk-P~G~lfittinrt~lS--------~~~~---i~---~~E~vl~i--------vp~Gt--- 221 (282)
T KOG1270|consen 171 ---VKDPQEFLNCLSALLK-PNGRLFITTINRTILS--------FAGT---IF---LAEIVLRI--------VPKGT--- 221 (282)
T ss_pred ---HhCHHHHHHHHHHHhC-CCCceEeeehhhhHHH--------hhcc---cc---HHHHHHHh--------cCCCC---
Confidence 3677888899999999 7777666 66521111 0011 11 11121121 23332
Q ss_pred eeeeeeeE-EecCHHHHHHHHHHcCCcEEEE
Q 045407 328 RHAFSYNW-RLWSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 328 r~~fsy~~-Rlysl~EI~d~LeeAGF~~V~v 357 (382)
|+| ..-++.|+..+|+.+|+....+
T Consensus 222 -----h~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 222 -----HTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred -----cCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 444 5668999999999999966554
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=124.86 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCcccccCCCccH----hHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHhccc-----ccc----------CC----
Q 045407 113 QPLHLQEDFCGTAL----LSTEWLRSDS-----RRTAVGLDLDLEALEWCMENNLN-----KVG----------AD---- 164 (382)
Q Consensus 113 ~p~~LLEl~CGTG~----LS~elar~g~-----~~tVvGVDLS~emL~~A~e~~~~-----kl~----------~d---- 164 (382)
.+.+|++.|||||. |++.+++.++ ..+|+|+|+|+.||+.|++.... .+. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 36789999999996 7777777654 36899999999999999986321 000 00
Q ss_pred ----CCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 165 ----GYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 165 ----~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
-..+|.|.++|+.+++ +..++||+|+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~--------------------------------------------------~~~~~fD~I~ 208 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES--------------------------------------------------PPLGDFDLIF 208 (264)
T ss_pred EChHHhCcCEEeeccCCCCC--------------------------------------------------CccCCCCEEE
Confidence 0135788888887655 1246799999
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
|-| ++.||. .++..+++++++++|+ |||++++-
T Consensus 209 crn-vl~yf~-~~~~~~~l~~l~~~L~-pGG~L~lg 241 (264)
T smart00138 209 CRN-VLIYFD-EPTQRKLLNRFAEALK-PGGYLFLG 241 (264)
T ss_pred ech-hHHhCC-HHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 976 888885 4678899999999999 99999994
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-13 Score=119.18 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=85.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+|||+|||+|.++..|++.++..+++|+|+|++|++.|+++.. .++.++++|+.+.+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~------------- 93 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP------------- 93 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-------------
Confidence 578999999999999999999988889999999999999988742 26889999986655
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+..+.||+|++.. ++.|+. +...+++++++.|+ |||+|
T Consensus 94 -------------------------------------~~~~~fD~vi~~~-~l~~~~---~~~~~l~~~~~~L~-~~G~l 131 (240)
T TIGR02072 94 -------------------------------------LEDSSFDLIVSNL-ALQWCD---DLSQALSELARVLK-PGGLL 131 (240)
T ss_pred -------------------------------------CCCCceeEEEEhh-hhhhcc---CHHHHHHHHHHHcC-CCcEE
Confidence 1246799999864 555554 56789999999999 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
++-..+
T Consensus 132 ~~~~~~ 137 (240)
T TIGR02072 132 AFSTFG 137 (240)
T ss_pred EEEeCC
Confidence 996654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=119.61 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc--------cCCCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV--------GADGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl--------~~d~~~RI~ 170 (382)
.+|.+++.... .....++|++|||+|+.+..||++|. +|+|||+|+.+|++|.+++.-.. ......+|.
T Consensus 21 ~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 21 PLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred HHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 35555554321 11124699999999999999999996 69999999999999765432100 001235799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
++++|+.+++. ...++||+|.... ++++|
T Consensus 98 ~~~~D~~~~~~-------------------------------------------------~~~~~fD~i~D~~-~~~~l- 126 (213)
T TIGR03840 98 IFCGDFFALTA-------------------------------------------------ADLGPVDAVYDRA-ALIAL- 126 (213)
T ss_pred EEEccCCCCCc-------------------------------------------------ccCCCcCEEEech-hhccC-
Confidence 99999987661 0035799998753 55566
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.++.-..|++.+.++|+ |||++++-.+
T Consensus 127 ~~~~R~~~~~~l~~lLk-pgG~~ll~~~ 153 (213)
T TIGR03840 127 PEEMRQRYAAHLLALLP-PGARQLLITL 153 (213)
T ss_pred CHHHHHHHHHHHHHHcC-CCCeEEEEEE
Confidence 46777889999999999 9998777443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=118.64 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=104.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.+. +++|+|+++.++..|+++... ...++.++++|+.+...
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~------------ 109 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALE-----SGLKIDYRQTTAEELAA------------ 109 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHH-----cCCceEEEecCHHHhhh------------
Confidence 45799999999999999999875 699999999999999987422 11357788877754430
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...++||+|++.+ ++.++.+ ....++.+.+.|+ |||+|
T Consensus 110 -------------------------------------~~~~~fD~Ii~~~-~l~~~~~---~~~~l~~~~~~L~-~gG~l 147 (233)
T PRK05134 110 -------------------------------------EHPGQFDVVTCME-MLEHVPD---PASFVRACAKLVK-PGGLV 147 (233)
T ss_pred -------------------------------------hcCCCccEEEEhh-HhhccCC---HHHHHHHHHHHcC-CCcEE
Confidence 0135799999864 5555554 4567899999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeee-EEecCHHHHHHHHHHcCC
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN-WRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~-~Rlysl~EI~d~LeeAGF 352 (382)
++...+.+........ ....+++.. . ... ... -+.++..++.++|+++||
T Consensus 148 ~v~~~~~~~~~~~~~~----~~~~~~~~~----------------~-~~~--------~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 148 FFSTLNRNLKSYLLAI----VGAEYVLRM----------------L-PKG--------THDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred EEEecCCChHHHHHHH----hhHHHHhhh----------------c-Ccc--------cCchhhcCCHHHHHHHHHHCCC
Confidence 9976543322111000 000111110 0 000 011 267899999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
..+.++
T Consensus 199 ~~v~~~ 204 (233)
T PRK05134 199 EVQDIT 204 (233)
T ss_pred eEeeee
Confidence 999875
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-12 Score=116.81 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=79.8
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|..+||+|||.||.|..||++|+ +|+++|+|+.+|+.+.+.+.. ....|...+.|+.+..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~-----~~l~i~~~~~Dl~~~~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEE-----EGLDIRTRVADLNDFD------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-----TT-TEEEEE-BGCCBS------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhh-----cCceeEEEEecchhcc------------
Confidence 366799999999999999999996 699999999999987665422 2356889999987766
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ ...||+|++. ..++||+ ++.....++++..+|+ |||+
T Consensus 91 -----~----------------------------------~~~yD~I~st-~v~~fL~-~~~~~~i~~~m~~~~~-pGG~ 128 (192)
T PF03848_consen 91 -----F----------------------------------PEEYDFIVST-VVFMFLQ-RELRPQIIENMKAATK-PGGY 128 (192)
T ss_dssp ----------------------------------------TTTEEEEEEE-SSGGGS--GGGHHHHHHHHHHTEE-EEEE
T ss_pred -----c----------------------------------cCCcCEEEEE-EEeccCC-HHHHHHHHHHHHhhcC-CcEE
Confidence 2 3569999874 3556655 6788999999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
+++-
T Consensus 129 ~li~ 132 (192)
T PF03848_consen 129 NLIV 132 (192)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9984
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=113.99 Aligned_cols=178 Identities=18% Similarity=0.179 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
+.|+...+........+.+|||+|||||.++..+++.+. +++|+|+|+.|++.|+++... .+..++.+.++|+.
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~~d~~ 103 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKK----DPLLKIEYRCTSVE 103 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHH----cCCCceEEEeCCHH
Confidence 466666665421012256799999999999999999875 599999999999999987432 11125788888875
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+... ....+||+|++.+ ++.++. +...
T Consensus 104 ~~~~-------------------------------------------------~~~~~~D~i~~~~-~l~~~~---~~~~ 130 (224)
T TIGR01983 104 DLAE-------------------------------------------------KGAKSFDVVTCME-VLEHVP---DPQA 130 (224)
T ss_pred Hhhc-------------------------------------------------CCCCCccEEEehh-HHHhCC---CHHH
Confidence 5431 0025799999865 444444 5567
Q ss_pred HHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEe
Q 045407 258 YFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRL 337 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rl 337 (382)
.|+.+++.|+ +||.+++-..+.+...... ... ...+++.. ...+. . ..-+.
T Consensus 131 ~l~~~~~~L~-~gG~l~i~~~~~~~~~~~~---~~~-~~~~~~~~-----------------~~~~~-~------~~~~~ 181 (224)
T TIGR01983 131 FIRACAQLLK-PGGILFFSTINRTPKSYLL---AIV-GAEYILRI-----------------VPKGT-H------DWEKF 181 (224)
T ss_pred HHHHHHHhcC-CCcEEEEEecCCCchHHHH---HHH-hhhhhhhc-----------------CCCCc-C------Chhhc
Confidence 8999999999 9999988554322111000 000 00111110 00010 0 01146
Q ss_pred cCHHHHHHHHHHcCCcEEEEEeccCc
Q 045407 338 WSLPEIKDCLEEAGFRSVHFWLREMP 363 (382)
Q Consensus 338 ysl~EI~d~LeeAGF~~V~v~~r~~~ 363 (382)
++..++.++|+++||+.+++....++
T Consensus 182 ~~~~~l~~~l~~~G~~i~~~~~~~~~ 207 (224)
T TIGR01983 182 IKPSELTSWLESAGLRVKDVKGLVYN 207 (224)
T ss_pred CCHHHHHHHHHHcCCeeeeeeeEEee
Confidence 78899999999999999987644333
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-12 Score=126.60 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=91.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+++.++++++..+|+|||+|+.||+.|+++.... +..+..++.++.+|+....
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~~~-------------- 294 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALSGV-------------- 294 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccccC--------------
Confidence 4699999999999999999999889999999999999999875321 1112247889998874322
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
...+||+|+|- +....++ +.....+.|+.++++|+ |||.
T Consensus 295 -------------------------------------~~~~fDlIlsNPPfh~~~~~-~~~ia~~l~~~a~~~Lk-pGG~ 335 (378)
T PRK15001 295 -------------------------------------EPFRFNAVLCNPPFHQQHAL-TDNVAWEMFHHARRCLK-INGE 335 (378)
T ss_pred -------------------------------------CCCCEEEEEECcCcccCccC-CHHHHHHHHHHHHHhcc-cCCE
Confidence 13469999992 1222222 33456789999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
|+|-.+-...+..++ .+.|.+.+.+
T Consensus 336 L~iV~nr~l~y~~~L--~~~fg~~~~v 360 (378)
T PRK15001 336 LYIVANRHLDYFHKL--KKIFGNCTTI 360 (378)
T ss_pred EEEEEecCcCHHHHH--HHHcCCceEE
Confidence 999865433344333 4445555443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-12 Score=122.39 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=100.1
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||-|.++..+|++ | .+|+||.||++.+++|+++... .+ -..+|.+..+|.++++
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~-~g--l~~~v~v~~~D~~~~~------------- 125 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIRE-AG--LEDRVEVRLQDYRDLP------------- 125 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-ST--SSSTEEEEES-GGG---------------
T ss_pred CEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHh-cC--CCCceEEEEeeccccC-------------
Confidence 57999999999999999999 6 5899999999999999998643 11 1247899999987655
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
++||.|++.- ++.++. ++.+..+|+.+.+.|+ |||+|
T Consensus 126 ----------------------------------------~~fD~IvSi~-~~Ehvg-~~~~~~~f~~~~~~Lk-pgG~~ 162 (273)
T PF02353_consen 126 ----------------------------------------GKFDRIVSIE-MFEHVG-RKNYPAFFRKISRLLK-PGGRL 162 (273)
T ss_dssp -----------------------------------------S-SEEEEES-EGGGTC-GGGHHHHHHHHHHHSE-TTEEE
T ss_pred ----------------------------------------CCCCEEEEEe-chhhcC-hhHHHHHHHHHHHhcC-CCcEE
Confidence 4799999995 777764 4788999999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++.......... ...+.... -|-+ .. +++.+ .+.++.+|..+++++||+
T Consensus 163 ~lq~i~~~~~~~--~~~~~~~~---~~i~-------ky-------iFPgg------------~lps~~~~~~~~~~~~l~ 211 (273)
T PF02353_consen 163 VLQTITHRDPPY--HAERRSSS---DFIR-------KY-------IFPGG------------YLPSLSEILRAAEDAGLE 211 (273)
T ss_dssp EEEEEEE--HHH--HHCTTCCC---HHHH-------HH-------TSTTS---------------BHHHHHHHHHHTT-E
T ss_pred EEEecccccccc--hhhcCCCc---eEEE-------Ee-------eCCCC------------CCCCHHHHHHHHhcCCEE
Confidence 997653211110 00000000 0100 00 01222 477899999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
+++++
T Consensus 212 v~~~~ 216 (273)
T PF02353_consen 212 VEDVE 216 (273)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=119.39 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=82.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
-.+++|+|||.|.|+..||.+.- +++++|+|+.+|+.|+++.. +..+|.+.++|+.++.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~------~~~~V~~~~~dvp~~~------------- 102 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLA------GLPHVEWIQADVPEFW------------- 102 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTT------T-SSEEEEES-TTT---------------
T ss_pred cceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcC------CCCCeEEEECcCCCCC-------------
Confidence 46799999999999999999985 69999999999999999962 2358999999996653
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+.++||+|+..- .+-||.+.++|..+.+.+..+|+ |||.+
T Consensus 103 --------------------------------------P~~~FDLIV~SE-VlYYL~~~~~L~~~l~~l~~~L~-pgG~L 142 (201)
T PF05401_consen 103 --------------------------------------PEGRFDLIVLSE-VLYYLDDAEDLRAALDRLVAALA-PGGHL 142 (201)
T ss_dssp ---------------------------------------SS-EEEEEEES--GGGSSSHHHHHHHHHHHHHTEE-EEEEE
T ss_pred --------------------------------------CCCCeeEEEEeh-HhHcCCCHHHHHHHHHHHHHHhC-CCCEE
Confidence 257899999985 66777778899999999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+-..
T Consensus 143 V~g~~ 147 (201)
T PF05401_consen 143 VFGHA 147 (201)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=111.68 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=98.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++.+. .|+|+|+|+.||+.|+++... .+ ...+|.+.++|+. ..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~-~~--~~~~i~~~~~d~~-~~------------- 124 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPE-AG--LAGNITFEVGDLE-SL------------- 124 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHh-cC--CccCcEEEEcCch-hc-------------
Confidence 46799999999999999999985 599999999999999987532 11 1147899998831 11
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.+.||+|++++ ++.++ ..+++...++.+.+.++ ||++
T Consensus 125 ---------------------------------------~~~fD~v~~~~-~l~~~-~~~~~~~~l~~l~~~~~--~~~~ 161 (230)
T PRK07580 125 ---------------------------------------LGRFDTVVCLD-VLIHY-PQEDAARMLAHLASLTR--GSLI 161 (230)
T ss_pred ---------------------------------------cCCcCEEEEcc-hhhcC-CHHHHHHHHHHHHhhcC--CeEE
Confidence 35699999875 44443 34678899999888765 4444
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
|. +.+.++... .... +.-.|.. .. .......++..++..+|+++||+
T Consensus 162 i~-~~~~~~~~~---~~~~---l~~~~~~--------------------~~------~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 162 FT-FAPYTPLLA---LLHW---IGGLFPG--------------------PS------RTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred EE-ECCccHHHH---HHHH---hccccCC--------------------cc------CCCCccccCHHHHHHHHHHCCCc
Confidence 43 222111110 0000 0011110 00 01123568999999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
.+++.
T Consensus 209 ~~~~~ 213 (230)
T PRK07580 209 VVRTE 213 (230)
T ss_pred eEeee
Confidence 98875
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-12 Score=112.08 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|..+|..++.. . .+.+|||+|||||.++..+++.+. +|+|+|+|++|+++|+++... ...++.++++|+
T Consensus 7 d~~~l~~~l~~-~---~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~ 75 (179)
T TIGR00537 7 DSLLLEANLRE-L---KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKL-----NNVGLDVVMTDL 75 (179)
T ss_pred cHHHHHHHHHh-c---CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHH-----cCCceEEEEccc
Confidence 34555555443 2 234699999999999999999986 799999999999999998532 123578888887
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC------
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH------ 250 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~------ 250 (382)
.+.. .++||+|++-. .+....
T Consensus 76 ~~~~----------------------------------------------------~~~fD~Vi~n~-p~~~~~~~~~~~ 102 (179)
T TIGR00537 76 FKGV----------------------------------------------------RGKFDVILFNP-PYLPLEDDLRRG 102 (179)
T ss_pred cccc----------------------------------------------------CCcccEEEECC-CCCCCcchhccc
Confidence 5433 34689988653 222111
Q ss_pred ------------ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 ------------KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ------------~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
...-+..+++.+.++|+ |||.|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~ 138 (179)
T TIGR00537 103 DWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQL 138 (179)
T ss_pred chhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEE
Confidence 12236778999999999 9999988
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-12 Score=112.33 Aligned_cols=101 Identities=23% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..++++++..+|+|+|+|+.|++.|+++... . +..++.++++|+..+.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~---~~~~i~~~~~d~~~~~------------- 94 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-F---GCGNIDIIPGEAPIEL------------- 94 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-h---CCCCeEEEecCchhhc-------------
Confidence 4579999999999999999998878999999999999999987422 1 1236888888863211
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...||+|++-. +. ..+...++.+++.|+ |||+|
T Consensus 95 ---------------------------------------~~~~D~v~~~~-~~------~~~~~~l~~~~~~Lk-~gG~l 127 (187)
T PRK08287 95 ---------------------------------------PGKADAIFIGG-SG------GNLTAIIDWSLAHLH-PGGRL 127 (187)
T ss_pred ---------------------------------------CcCCCEEEECC-Cc------cCHHHHHHHHHHhcC-CCeEE
Confidence 24689998753 22 234567889999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++...
T Consensus 128 v~~~~ 132 (187)
T PRK08287 128 VLTFI 132 (187)
T ss_pred EEEEe
Confidence 99653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=111.55 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|+++... .+..++.++++|+.++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~----~~~~~~~~~~~d~~~~ 149 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR----LGLDNVTFLQSDWFEP 149 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----cCCCeEEEEECchhcc
Confidence 4579999999999999999987777999999999999999987532 1223699999998653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-12 Score=116.89 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=76.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++.. ..+|+|||+|++||+.|+++. .++++|+.+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~lp------------- 105 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEALP------------- 105 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhCC-------------
Confidence 5679999999999999999984 258999999999999998752 24688887666
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
|....||+|++.+ ++.++. ++.+.+++++++|+ | ++.
T Consensus 106 -------------------------------------~~d~sfD~v~~~~-~l~~~~---d~~~~l~e~~RvLk-p-~~~ 142 (226)
T PRK05785 106 -------------------------------------FRDKSFDVVMSSF-ALHASD---NIEKVIAEFTRVSR-K-QVG 142 (226)
T ss_pred -------------------------------------CCCCCEEEEEecC-hhhccC---CHHHHHHHHHHHhc-C-ceE
Confidence 2357799999976 666554 56789999999999 6 444
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+++.
T Consensus 143 ile~~ 147 (226)
T PRK05785 143 FIAMG 147 (226)
T ss_pred EEEeC
Confidence 56664
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-12 Score=121.30 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=112.8
Q ss_pred CcccccCCCccHhHHHHHHhCCC------CeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCCCchhhhhccc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR------RTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~------~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
..+||+|||||-++..+++.-.. .+|+++|++++||+.|.++... .+. ...++.++++|..+++
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~~dAE~Lp------- 172 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVEGDAEDLP------- 172 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEeCCcccCC-------
Confidence 46899999999999999998776 6899999999999999999744 222 2347999999998887
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
|....||+.+..+ ++-+.+ +..+.++.+|++|+
T Consensus 173 -------------------------------------------Fdd~s~D~yTiaf-GIRN~t---h~~k~l~EAYRVLK 205 (296)
T KOG1540|consen 173 -------------------------------------------FDDDSFDAYTIAF-GIRNVT---HIQKALREAYRVLK 205 (296)
T ss_pred -------------------------------------------CCCCcceeEEEec-ceecCC---CHHHHHHHHHHhcC
Confidence 3456799999886 444444 56789999999999
Q ss_pred CCCcEEEE-eccCCC-chhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeee---eeE-EecCHH
Q 045407 268 KKGGIFVM-DLYGGT-SSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFS---YNW-RLWSLP 341 (382)
Q Consensus 268 ~pGGiFVf-Dl~gg~-s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fs---y~~-Rlysl~ 341 (382)
|||.|.. ++.--+ +....+ ..+..||.+...-.+ + .+. ++..+ ++. |.-+-+
T Consensus 206 -pGGrf~cLeFskv~~~~l~~f------------y~~ysf~VlpvlG~~-----i-agd---~~sYqYLveSI~rfp~qe 263 (296)
T KOG1540|consen 206 -PGGRFSCLEFSKVENEPLKWF------------YDQYSFDVLPVLGEI-----I-AGD---RKSYQYLVESIRRFPPQE 263 (296)
T ss_pred -CCcEEEEEEccccccHHHHHH------------HHhhhhhhhchhhHh-----h-hhh---HhhhhhHHhhhhcCCCHH
Confidence 9999985 443211 121111 122223332221100 0 111 22222 233 566778
Q ss_pred HHHHHHHHcCCcEEE
Q 045407 342 EIKDCLEEAGFRSVH 356 (382)
Q Consensus 342 EI~d~LeeAGF~~V~ 356 (382)
|++.+.++|||.++.
T Consensus 264 ~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 264 EFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHcCCcccc
Confidence 999999999999987
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=133.42 Aligned_cols=110 Identities=10% Similarity=0.105 Sum_probs=85.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|+++... .+.++.++++|+.+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-----~g~~ie~I~gDa~dLp~------------ 481 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-----EGRSWNVIKGDAINLSS------------ 481 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-----cCCCeEEEEcchHhCcc------------
Confidence 4579999999999999999988888999999999999999987421 22478899999876541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh---cccC------ChhHHHHHHHHHHh
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC---CCLH------KRADLVLYFKHVLH 264 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~---~yL~------~r~dL~~yFr~V~~ 264 (382)
.|....||+|++..... .|+. +.+++...|+.+++
T Consensus 482 ------------------------------------~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~R 525 (677)
T PRK06922 482 ------------------------------------SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYE 525 (677)
T ss_pred ------------------------------------ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHH
Confidence 02246799998643222 2332 35789999999999
Q ss_pred hccCCCcEEEE-ec
Q 045407 265 ALSKKGGIFVM-DL 277 (382)
Q Consensus 265 ~L~~pGGiFVf-Dl 277 (382)
+|+ |||.||+ |.
T Consensus 526 VLK-PGGrLII~D~ 538 (677)
T PRK06922 526 VLK-PGGRIIIRDG 538 (677)
T ss_pred HcC-CCcEEEEEeC
Confidence 999 9999999 64
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-12 Score=103.72 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=80.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++...++.+ ..+++|+|+|+.++++|+.+... .+ ...++.++++|.++...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~-~~--~~~~~~~~~~D~~~~~~------------- 64 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR-NG--LDDRVEVIVGDARDLPE------------- 64 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH-CT--TTTTEEEEESHHHHHHH-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH-cc--CCceEEEEECchhhchh-------------
Confidence 368999999999999999999 57899999999999999998643 11 12479999999865541
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC----hhHHHHHHHHHHhhccCCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK----RADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~----r~dL~~yFr~V~~~L~~pG 270 (382)
.+..++||+|++----...... .......++++.+.|+ ||
T Consensus 65 -----------------------------------~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~g 108 (117)
T PF13659_consen 65 -----------------------------------PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLK-PG 108 (117)
T ss_dssp -----------------------------------TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEE-EE
T ss_pred -----------------------------------hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcC-CC
Confidence 0225779999885544333222 2245788999999999 99
Q ss_pred cEEEE
Q 045407 271 GIFVM 275 (382)
Q Consensus 271 GiFVf 275 (382)
|+|++
T Consensus 109 G~~~~ 113 (117)
T PF13659_consen 109 GVLVF 113 (117)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99987
|
... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=112.96 Aligned_cols=104 Identities=8% Similarity=0.033 Sum_probs=77.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++.....+|+|+|+|++||+.++++... ..+|.++.+|+.+|...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~------------ 135 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERY------------ 135 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchh------------
Confidence 479999999999999999985445899999999999988876422 13688999998765300
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. ++ ...||+|++- +..+......++++++.|+ |||.|+
T Consensus 136 ---~-------------------------------~l-~~~~D~i~~d------~~~p~~~~~~L~~~~r~LK-pGG~lv 173 (226)
T PRK04266 136 ---A-------------------------------HV-VEKVDVIYQD------VAQPNQAEIAIDNAEFFLK-DGGYLL 173 (226)
T ss_pred ---h-------------------------------hc-cccCCEEEEC------CCChhHHHHHHHHHHHhcC-CCcEEE
Confidence 0 01 2459999853 2233344567899999999 999999
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+-++
T Consensus 174 I~v~ 177 (226)
T PRK04266 174 LAIK 177 (226)
T ss_pred EEEe
Confidence 8654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-12 Score=115.39 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC-CCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV-LQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV-~~~~~~~~~~~~~~~~ 192 (382)
...|||+|||||.++..+++..+..+|+|||+|++|++.|+++... .+..++.++++|+ ..++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~----~~~~~v~~~~~d~~~~l~~----------- 105 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE----EGLTNLRLLCGDAVEVLLD----------- 105 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH----cCCCCEEEEecCHHHHHHH-----------
Confidence 4579999999999999999987767899999999999999987532 1224799999998 43320
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh-----hHHHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-----ADLVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-----~dL~~yFr~V~~~L~ 267 (382)
. +....||+|++.+ +.-|.... .....+++.++++|+
T Consensus 106 -----~--------------------------------~~~~~~D~V~~~~-~~p~~~~~~~~~~~~~~~~l~~i~~~Lk 147 (202)
T PRK00121 106 -----M--------------------------------FPDGSLDRIYLNF-PDPWPKKRHHKRRLVQPEFLALYARKLK 147 (202)
T ss_pred -----H--------------------------------cCccccceEEEEC-CCCCCCccccccccCCHHHHHHHHHHcC
Confidence 0 1235699998753 32222211 124678999999999
Q ss_pred CCCcEEEEeccC
Q 045407 268 KKGGIFVMDLYG 279 (382)
Q Consensus 268 ~pGGiFVfDl~g 279 (382)
|||+|++-...
T Consensus 148 -pgG~l~i~~~~ 158 (202)
T PRK00121 148 -PGGEIHFATDW 158 (202)
T ss_pred -CCCEEEEEcCC
Confidence 99999996543
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-11 Score=117.72 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=100.8
Q ss_pred CCCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHH--HhCCCCeEEEEeCCHHHHHHHHH
Q 045407 78 TDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWL--RSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 78 ~~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~ela--r~g~~~tVvGVDLS~emL~~A~e 155 (382)
..-| |+.-|.++ .+-+...+..+..+ .|.+|+|+|||.|-++..++ +..++.+++|+|+|++|+++|++
T Consensus 97 ~~Fp-y~~nY~~L---~~lE~~~L~~~~~~-----~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~ 167 (296)
T PLN03075 97 NLFP-YYNNYLKL---SKLEFDLLSQHVNG-----VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARR 167 (296)
T ss_pred hcCC-chHHHHHH---HHHHHHHHHHhhcC-----CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 4456 77888888 45555555444332 47789999999775544433 45677789999999999999999
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
....+ .+-..+|.|.++|+.+... .+..
T Consensus 168 ~~~~~--~gL~~rV~F~~~Da~~~~~--------------------------------------------------~l~~ 195 (296)
T PLN03075 168 LVSSD--PDLSKRMFFHTADVMDVTE--------------------------------------------------SLKE 195 (296)
T ss_pred Hhhhc--cCccCCcEEEECchhhccc--------------------------------------------------ccCC
Confidence 86321 1123579999999876530 1467
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
||+|+++ ++-|+.. ++-..+|++++++|+ |||+|++-..
T Consensus 196 FDlVF~~--ALi~~dk-~~k~~vL~~l~~~Lk-PGG~Lvlr~~ 234 (296)
T PLN03075 196 YDVVFLA--ALVGMDK-EEKVKVIEHLGKHMA-PGALLMLRSA 234 (296)
T ss_pred cCEEEEe--ccccccc-ccHHHHHHHHHHhcC-CCcEEEEecc
Confidence 9999999 6666543 566899999999999 9999999874
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-10 Score=110.02 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=143.9
Q ss_pred CCCCCCchHH-------HHHHhhcCChhh-----HHHHHHHHHHhhCCC-CCCcccccCCCccHhHHHHHH----hCCCC
Q 045407 76 PSTDMPSKFL-------LYQQSVQSPKGD-----ISYLQKFFLIYVGGR-QPLHLQEDFCGTALLSTEWLR----SDSRR 138 (382)
Q Consensus 76 ~~~~~p~~~~-------LYd~~vq~p~~D-----i~yl~~~f~~y~ggr-~p~~LLEl~CGTG~LS~elar----~g~~~ 138 (382)
..+.+|+|+. ||++.++.|+|= ++-|++....-+..- ....|+|+|||.|+-+..|++ .+...
T Consensus 26 ~~k~lp~k~~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~ 105 (319)
T TIGR03439 26 QPRTLPTLLLYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSV 105 (319)
T ss_pred CCCCCChHhhhcchHHHHHHHHHcCCccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCc
Confidence 4467888874 589999998774 344444433222111 123689999999998665554 33335
Q ss_pred eEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhcccc
Q 045407 139 TAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNF 218 (382)
Q Consensus 139 tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (382)
+-++||+|.++|+.+.++.... .-....|.-++||..++.. . +. .+
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~--~~p~l~v~~l~gdy~~~l~--~-------------l~----------------~~- 151 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLG--NFSHVRCAGLLGTYDDGLA--W-------------LK----------------RP- 151 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhc--cCCCeEEEEEEecHHHHHh--h-------------cc----------------cc-
Confidence 7899999999999999886410 1122345558998766531 0 10 00
Q ss_pred ccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHh-hccCCCcEEEE--eccCCC-------------c
Q 045407 219 TASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLH-ALSKKGGIFVM--DLYGGT-------------S 282 (382)
Q Consensus 219 ~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~-~L~~pGGiFVf--Dl~gg~-------------s 282 (382)
.....+.+|+.+-.|++-|.. ++....++.+++ +|+ |||.||+ |+.-.. +
T Consensus 152 ------------~~~~~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~-~~d~lLiG~D~~k~~~~l~~AY~d~~gvT 217 (319)
T TIGR03439 152 ------------ENRSRPTTILWLGSSIGNFSR-PEAAAFLAGFLATALS-PSDSFLIGLDGCKDPDKVLRAYNDPGGVT 217 (319)
T ss_pred ------------cccCCccEEEEeCccccCCCH-HHHHHHHHHHHHhhCC-CCCEEEEecCCCCCHHHHHHHhcCCcchh
Confidence 002346899999999998654 677999999999 999 8999999 764211 1
Q ss_pred h--hh-hhHh-hhcc-------CCeEEEEeecccccccceEEEEEEE-----------EeecccceeeeeeeeeEEecCH
Q 045407 283 S--EQ-KLRL-QRRF-------ANFTYVWEQAEFDIIERKTRISLHF-----------HLQKEQKKLRHAFSYNWRLWSL 340 (382)
Q Consensus 283 ~--e~-kl~~-~R~~-------~~~tyvWeq~~fD~~~~~~ri~L~F-----------~~~~~~~~lr~~fsy~~Rlysl 340 (382)
. .. -|.. .|.. ++|.++ +.||+..+++++.|.. .+.+|. .+.- ..-+=|++
T Consensus 218 a~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~---a~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE-~I~t---e~S~Kyt~ 290 (319)
T TIGR03439 218 RRFVLNGLVHANEILGSEAFREEDWEFL---GEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGE-KIRF---ECSGKYDK 290 (319)
T ss_pred HHHHHHHHHHHHHHhCccccCHHHcEEE---EEEcCCCCeEEEEEEeCCcEEEcCceEEEcCCC-EEEE---EeeeCCCH
Confidence 1 00 1100 1221 233333 2456766666665543 233333 2221 22266899
Q ss_pred HHHHHHHHHcCCcEEEEEec
Q 045407 341 PEIKDCLEEAGFRSVHFWLR 360 (382)
Q Consensus 341 ~EI~d~LeeAGF~~V~v~~r 360 (382)
++++.+++.|||+.+++|..
T Consensus 291 ~~~~~l~~~aG~~~~~~W~d 310 (319)
T TIGR03439 291 DEREKLCQSAGLKVVDVWTN 310 (319)
T ss_pred HHHHHHHHHCCCeeeEEEEC
Confidence 99999999999999999963
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=116.50 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=52.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|++|... .+- ..+|.++++|+.++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~-~~~--~~~i~~~~~D~~~~ 184 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER-HGL--EDRVTLIQSDLFAA 184 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECchhhc
Confidence 5679999999999999999998778999999999999999998532 111 14799999998543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=116.57 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=74.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCC---CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR---RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~---~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
+.+|||+|||||.++..+++..+. .+|+|+|+|+.||+.|+++. .++.++++|+.+++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~lp---------- 146 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRLP---------- 146 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccCC----------
Confidence 457999999999999999887542 26999999999999998763 25789999987766
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
|....||+|++... + ..++.++++|+ ||
T Consensus 147 ----------------------------------------~~~~sfD~I~~~~~-------~----~~~~e~~rvLk-pg 174 (272)
T PRK11088 147 ----------------------------------------FADQSLDAIIRIYA-------P----CKAEELARVVK-PG 174 (272)
T ss_pred ----------------------------------------CcCCceeEEEEecC-------C----CCHHHHHhhcc-CC
Confidence 22467999998642 1 13567889999 99
Q ss_pred cEEEEeccC
Q 045407 271 GIFVMDLYG 279 (382)
Q Consensus 271 GiFVfDl~g 279 (382)
|+||+-..+
T Consensus 175 G~li~~~p~ 183 (272)
T PRK11088 175 GIVITVTPG 183 (272)
T ss_pred CEEEEEeCC
Confidence 999985544
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=117.81 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=89.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++..++++.+..+|+|+|+|+.||+.|+++... ......++.+|+....
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~-----n~l~~~~~~~D~~~~~-------------- 258 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA-----NGLEGEVFASNVFSDI-------------- 258 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCCEEEEccccccc--------------
Confidence 469999999999999999998877899999999999999987532 1123566777764321
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc--CChhHHHHHHHHHHhhccCCCcE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL--HKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL--~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.||+|+|- -.|.+. .+.......++.+.++|+ |||.
T Consensus 259 --------------------------------------~~~fDlIvsN-PPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~ 298 (342)
T PRK09489 259 --------------------------------------KGRFDMIISN-PPFHDGIQTSLDAAQTLIRGAVRHLN-SGGE 298 (342)
T ss_pred --------------------------------------CCCccEEEEC-CCccCCccccHHHHHHHHHHHHHhcC-cCCE
Confidence 3579999993 343321 234677899999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
|++-.+.--+++.. +.+.|..+..+
T Consensus 299 L~iVan~~l~y~~~--l~~~Fg~~~~l 323 (342)
T PRK09489 299 LRIVANAFLPYPDL--LDETFGSHEVL 323 (342)
T ss_pred EEEEEeCCCChHHH--HHHHcCCeEEE
Confidence 99866543344432 23445555444
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=111.91 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc--c---c---CCCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK--V---G---ADGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k--l---~---~d~~~RI~ 170 (382)
.+|.+++... ......+||++|||+|+.+..||++|. +|+|||+|+.+|++|..++.-. . + .....+|.
T Consensus 24 ~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 24 PLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred HHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 4566655431 111124699999999999999999996 6999999999999986543210 0 0 01135799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
++++|+.++.. ...+.||+|.... ++++|
T Consensus 101 ~~~~D~~~l~~-------------------------------------------------~~~~~fd~v~D~~-~~~~l- 129 (218)
T PRK13255 101 IYCGDFFALTA-------------------------------------------------ADLADVDAVYDRA-ALIAL- 129 (218)
T ss_pred EEECcccCCCc-------------------------------------------------ccCCCeeEEEehH-hHhhC-
Confidence 99999987651 0135789998765 55555
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.++.-..|++.+.+.|+ |||++++
T Consensus 130 ~~~~R~~~~~~l~~lL~-pgG~~~l 153 (218)
T PRK13255 130 PEEMRERYVQQLAALLP-AGCRGLL 153 (218)
T ss_pred CHHHHHHHHHHHHHHcC-CCCeEEE
Confidence 46777999999999999 9996444
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-12 Score=119.24 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=80.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
+.|||.|||.|.||..+||.| +.|+|+|+|+.+|+.|+.++.+ .+..|.+.+..+.++.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e-----~gv~i~y~~~~~edl~-------------- 119 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE-----SGVNIDYRQATVEDLA-------------- 119 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh-----ccccccchhhhHHHHH--------------
Confidence 469999999999999999999 4799999999999999998643 2234556666654444
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. .-++||+|+|+- .+=|+.+++. .++++.+.|| |||+.+
T Consensus 120 ---~---------------------------------~~~~FDvV~cmE-VlEHv~dp~~---~~~~c~~lvk-P~G~lf 158 (243)
T COG2227 120 ---S---------------------------------AGGQFDVVTCME-VLEHVPDPES---FLRACAKLVK-PGGILF 158 (243)
T ss_pred ---h---------------------------------cCCCccEEEEhh-HHHccCCHHH---HHHHHHHHcC-CCcEEE
Confidence 1 026899999996 7777776654 7788899998 999999
Q ss_pred E-ecc
Q 045407 275 M-DLY 278 (382)
Q Consensus 275 f-Dl~ 278 (382)
+ .++
T Consensus 159 ~STin 163 (243)
T COG2227 159 LSTIN 163 (243)
T ss_pred Eeccc
Confidence 8 444
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-11 Score=120.21 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=79.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.. ..+|+|+|+|++|+++|+++.. ...+.+..+|++++
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l-------------- 225 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL-------------- 225 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc--------------
Confidence 3579999999999999999863 2589999999999999999851 12477777776432
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.++||+|++.. .+.++. ...+..+|+.+++.|+ |||+|
T Consensus 226 ---------------------------------------~~~fD~Ivs~~-~~ehvg-~~~~~~~l~~i~r~Lk-pGG~l 263 (383)
T PRK11705 226 ---------------------------------------NGQFDRIVSVG-MFEHVG-PKNYRTYFEVVRRCLK-PDGLF 263 (383)
T ss_pred ---------------------------------------CCCCCEEEEeC-chhhCC-hHHHHHHHHHHHHHcC-CCcEE
Confidence 25699999865 455543 3567899999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++-..
T Consensus 264 vl~~i 268 (383)
T PRK11705 264 LLHTI 268 (383)
T ss_pred EEEEc
Confidence 99544
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=114.27 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=51.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+|||+|||||.++..+++..+...|+|+|+|++||++|+++... .+- ..++.++++|+.++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~-~~~--~~~v~~~~~d~~~~ 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK-NQL--EHRVEFIQSNLFEP 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECchhcc
Confidence 579999999999999999998877999999999999999998532 111 13699999998654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-11 Score=106.22 Aligned_cols=139 Identities=15% Similarity=0.175 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..|.+.+... ...+|||+|||||.++..++++++..+|+++|+|+.|++.|+++... . +-..+.++++|+.+
T Consensus 21 ~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~-n---~~~~v~~~~~d~~~ 92 (170)
T PF05175_consen 21 RLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER-N---GLENVEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH-T---TCTTEEEEESSTTT
T ss_pred HHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-c---Cccccccccccccc
Confidence 4566666553 23469999999999999999999987899999999999999987533 1 11128999999865
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc-ccCChhHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC-CLHKRADLVL 257 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~-yL~~r~dL~~ 257 (382)
.. ...+||+|++--=... .-....-+..
T Consensus 93 ~~---------------------------------------------------~~~~fD~Iv~NPP~~~~~~~~~~~~~~ 121 (170)
T PF05175_consen 93 AL---------------------------------------------------PDGKFDLIVSNPPFHAGGDDGLDLLRD 121 (170)
T ss_dssp TC---------------------------------------------------CTTCEEEEEE---SBTTSHCHHHHHHH
T ss_pred cc---------------------------------------------------cccceeEEEEccchhcccccchhhHHH
Confidence 44 1467999998542111 0012234788
Q ss_pred HHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 258 YFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
.++.+.++|+ |||.|+|=+......... +.+.|.++..+
T Consensus 122 ~i~~a~~~Lk-~~G~l~lv~~~~~~~~~~--l~~~f~~~~~~ 160 (170)
T PF05175_consen 122 FIEQARRYLK-PGGRLFLVINSHLGYERL--LKELFGDVEVV 160 (170)
T ss_dssp HHHHHHHHEE-EEEEEEEEEETTSCHHHH--HHHHHS--EEE
T ss_pred HHHHHHHhcc-CCCEEEEEeecCCChHHH--HHHhcCCEEEE
Confidence 8999999999 999998844432223222 34445444433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-11 Score=110.48 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=57.8
Q ss_pred CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 93 SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 93 ~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
.|..|...+...+... +-....+|||+|||||.++..+++.+. .+|+|+|+|+.|+++|+++... .+.++.++
T Consensus 17 ~p~~ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~-----~~~~~~~~ 89 (223)
T PRK14967 17 RPQEDTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALL-----AGVDVDVR 89 (223)
T ss_pred CCCCcHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHH-----hCCeeEEE
Confidence 3555666666666542 112224799999999999999999875 4899999999999999987532 12367888
Q ss_pred eccCCC
Q 045407 173 HGNVLQ 178 (382)
Q Consensus 173 ~gDV~~ 178 (382)
++|+.+
T Consensus 90 ~~d~~~ 95 (223)
T PRK14967 90 RGDWAR 95 (223)
T ss_pred ECchhh
Confidence 888754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=123.69 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=82.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++..+++.+. +|+|||+|++||+.+++.+. ...++.++++|+....
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~-------------- 96 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING------HYKNVKFMCADVTSPD-------------- 96 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccc--------------
Confidence 4799999999999999999874 79999999999998876431 1247899999986543
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
+ .+....||+|+|.. +++||.+ +++...++.+++.|+ |||+++
T Consensus 97 ---~-------------------------------~~~~~~fD~I~~~~-~l~~l~~-~~~~~~l~~~~r~Lk-~gG~l~ 139 (475)
T PLN02336 97 ---L-------------------------------NISDGSVDLIFSNW-LLMYLSD-KEVENLAERMVKWLK-VGGYIF 139 (475)
T ss_pred ---c-------------------------------CCCCCCEEEEehhh-hHHhCCH-HHHHHHHHHHHHhcC-CCeEEE
Confidence 1 02245799999864 7777765 578999999999999 999999
Q ss_pred E
Q 045407 275 M 275 (382)
Q Consensus 275 f 275 (382)
+
T Consensus 140 ~ 140 (475)
T PLN02336 140 F 140 (475)
T ss_pred E
Confidence 8
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=105.89 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=65.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++..+++.. ..+++|||+|++|++.|+++ ++.++++|+.+...
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~------------- 69 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLE------------- 69 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhccc-------------
Confidence 369999999999999988764 34789999999999998754 35678888754210
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
.+...+||+|++.. ++.|+.+. ...++.+++.++
T Consensus 70 -----------------------------------~~~~~sfD~Vi~~~-~l~~~~d~---~~~l~e~~r~~~ 103 (194)
T TIGR02081 70 -----------------------------------AFPDKSFDYVILSQ-TLQATRNP---EEILDEMLRVGR 103 (194)
T ss_pred -----------------------------------ccCCCCcCEEEEhh-HhHcCcCH---HHHHHHHHHhCC
Confidence 01245799999975 77787654 455677766665
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.7e-11 Score=110.22 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
|..+...+.+..........+.+|||+|||+|.++..+++..+..+|+|+|+|+.|+++|+++... ....++.+++
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~----~~~~~i~~~~ 164 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH----GLGARVEFLQ 164 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh----CCCCcEEEEE
Confidence 444444444444322233335689999999999999999998778999999999999999998531 1234799999
Q ss_pred ccCCCc
Q 045407 174 GNVLQP 179 (382)
Q Consensus 174 gDV~~~ 179 (382)
+|+.++
T Consensus 165 ~d~~~~ 170 (275)
T PRK09328 165 GDWFEP 170 (275)
T ss_pred ccccCc
Confidence 998554
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-11 Score=107.27 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++..+...|+|||+|++|+++|+++... . +..++.++++|+.+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-~---~~~~v~~~~~d~~~~~~------------ 104 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-F---GVKNVEVIEGSAPECLA------------ 104 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-h---CCCCeEEEECchHHHHh------------
Confidence 3579999999999999999887767999999999999999987422 2 22368999999744210
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. + .+.+|.|+... ...+...++.+++.|+ |||.|
T Consensus 105 ----~--------------------------------~-~~~~d~v~~~~--------~~~~~~~l~~~~~~Lk-pgG~l 138 (196)
T PRK07402 105 ----Q--------------------------------L-APAPDRVCIEG--------GRPIKEILQAVWQYLK-PGGRL 138 (196)
T ss_pred ----h--------------------------------C-CCCCCEEEEEC--------CcCHHHHHHHHHHhcC-CCeEE
Confidence 0 0 12356654421 1356788999999999 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
++....
T Consensus 139 i~~~~~ 144 (196)
T PRK07402 139 VATASS 144 (196)
T ss_pred EEEeec
Confidence 998753
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=109.51 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=87.4
Q ss_pred EEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhcccccc
Q 045407 141 VGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTA 220 (382)
Q Consensus 141 vGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (382)
+|||+|++||+.|+++...+ ......+|.++++|+.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~-~~~~~~~i~~~~~d~~~lp---------------------------------------- 39 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLK-ARSCYKCIEWIEGDAIDLP---------------------------------------- 39 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcc-cccCCCceEEEEechhhCC----------------------------------------
Confidence 59999999999998774321 1112247999999998776
Q ss_pred CCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEE
Q 045407 221 SSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 221 ~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
+....||+|++.+ ++.++ .+....|++++++|+ |||.|++ |+....+..... .. .+ .
T Consensus 40 ----------~~~~~fD~v~~~~-~l~~~---~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~~~~~~~--~~---~~--~ 97 (160)
T PLN02232 40 ----------FDDCEFDAVTMGY-GLRNV---VDRLRAMKEMYRVLK-PGSRVSILDFNKSNQSVTTF--MQ---GW--M 97 (160)
T ss_pred ----------CCCCCeeEEEecc-hhhcC---CCHHHHHHHHHHHcC-cCeEEEEEECCCCChHHHHH--HH---HH--H
Confidence 2246799999864 44444 467899999999999 9999976 665332211100 00 00 0
Q ss_pred EeecccccccceEEEEEEEEeecccceeeeeeeee----EEecCHHHHHHHHHHcCCcEEEEE
Q 045407 300 WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN----WRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 300 Weq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~----~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
+.. .-+.-..+ ... +++++|- ....+.+|+.++|++|||+.+..+
T Consensus 98 ~~~--~~~~~~~~-------~~~-----~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 98 IDN--VVVPVATV-------YDL-----AKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred ccc--hHhhhhHH-------hCC-----hHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 100 00000000 000 1122222 367799999999999999999765
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.3e-11 Score=107.29 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=80.1
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++. ++..+|+|+|+|++|++.|+++... .+- ..++.++++|+.+... .
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~-~g~--~~~v~~~~~d~~~~l~--~-------- 107 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK-FGV--LNNIVLIKGEAPEILF--T-------- 107 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-hCC--CCCeEEEEechhhhHh--h--------
Confidence 357999999999999999875 5556899999999999999988532 220 2478899999865320 0
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ .+.||+|++... ..++..+++.+.+.|+ |||.
T Consensus 108 -----~----------------------------------~~~~D~V~~~~~-------~~~~~~~l~~~~~~Lk-pgG~ 140 (198)
T PRK00377 108 -----I----------------------------------NEKFDRIFIGGG-------SEKLKEIISASWEIIK-KGGR 140 (198)
T ss_pred -----c----------------------------------CCCCCEEEECCC-------cccHHHHHHHHHHHcC-CCcE
Confidence 0 256999988431 2456788999999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+|++..
T Consensus 141 lv~~~~ 146 (198)
T PRK00377 141 IVIDAI 146 (198)
T ss_pred EEEEee
Confidence 999764
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=110.80 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=86.8
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|.+|||+|||+|.++..|++..+..+|++||+|+++++.|+++... .. ...|+.++++|.++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--~~-~~~rv~v~~~Da~~~l~----------- 131 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--PE-NGERFEVIEADGAEYIA----------- 131 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--CC-CCCceEEEECCHHHHHH-----------
Confidence 47789999999999999999998888999999999999999998522 11 12589999999765530
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. ...+||+|++=.+.-......-....+|+.++++|+ |||+
T Consensus 132 -----~---------------------------------~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~-pgGv 172 (262)
T PRK04457 132 -----V---------------------------------HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALS-SDGI 172 (262)
T ss_pred -----h---------------------------------CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcC-CCcE
Confidence 0 034699998643221111111113689999999999 9999
Q ss_pred EEEeccCCCc
Q 045407 273 FVMDLYGGTS 282 (382)
Q Consensus 273 FVfDl~gg~s 282 (382)
|++.+++..+
T Consensus 173 lvin~~~~~~ 182 (262)
T PRK04457 173 FVVNLWSRDK 182 (262)
T ss_pred EEEEcCCCch
Confidence 9999876543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9e-11 Score=115.30 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=51.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|+++... .+ -..+|.++++|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~-~~--l~~~i~~~~~D~~~ 195 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER-HG--LEDRVTLIESDLFA 195 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hC--CCCcEEEEECchhh
Confidence 679999999999999999998778999999999999999998532 11 12479999999855
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-11 Score=107.98 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=81.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+||+|||+|.++..+|++.+.+.|+|||+|++||+.|+++... .+..+|.++++|+.++.. .
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~----~~l~ni~~i~~d~~~~~~-~----------- 81 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK----LGLKNLHVLCGDANELLD-K----------- 81 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH----hCCCCEEEEccCHHHHHH-h-----------
Confidence 468999999999999999999888999999999999999987532 123479999999976541 0
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh-----hHHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-----ADLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-----~dL~~yFr~V~~~L~~p 269 (382)
+ +....+|+|++.+ +.-|...+ -.....++.++++|+ |
T Consensus 82 ---~--------------------------------~~~~~~d~v~~~~-pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-p 124 (194)
T TIGR00091 82 ---F--------------------------------FPDGSLSKVFLNF-PDPWPKKRHNKRRITQPHFLKEYANVLK-K 124 (194)
T ss_pred ---h--------------------------------CCCCceeEEEEEC-CCcCCCCCccccccCCHHHHHHHHHHhC-C
Confidence 0 1123688887654 33333322 122568899999999 9
Q ss_pred CcEEEEec
Q 045407 270 GGIFVMDL 277 (382)
Q Consensus 270 GGiFVfDl 277 (382)
||.|+|-.
T Consensus 125 gG~l~~~t 132 (194)
T TIGR00091 125 GGVIHFKT 132 (194)
T ss_pred CCEEEEEe
Confidence 99999844
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=107.03 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=74.6
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..|++.. ...+|+|||++++|++.|+++... .+..+|.++++|+....
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~----~g~~~v~~~~gd~~~~~------------- 140 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK----LGYDNVEVIVGDGTLGY------------- 140 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCeEEEECCcccCC-------------
Confidence 479999999999999998873 445899999999999999987432 23347999999986543
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
....+||+|++.+.. ++ ....+++.|+ |||++
T Consensus 141 -------------------------------------~~~~~fD~I~~~~~~----~~------~~~~l~~~Lk-pgG~l 172 (212)
T PRK13942 141 -------------------------------------EENAPYDRIYVTAAG----PD------IPKPLIEQLK-DGGIM 172 (212)
T ss_pred -------------------------------------CcCCCcCEEEECCCc----cc------chHHHHHhhC-CCcEE
Confidence 014579999886532 21 2235666898 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+-+-
T Consensus 173 vi~~~ 177 (212)
T PRK13942 173 VIPVG 177 (212)
T ss_pred EEEEc
Confidence 99763
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=113.50 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=84.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||-|.+++..|++- ..+|+||+||++++++|+++..+ .+- ..+|.+.-+|.+++.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~-~gl--~~~v~v~l~d~rd~~-------------- 135 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAA-RGL--EDNVEVRLQDYRDFE-------------- 135 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHH-cCC--CcccEEEeccccccc--------------
Confidence 479999999999999999883 35899999999999999997543 111 137999999998876
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
++||-|||.- .|=|+-. +....||+.+++.|+ |||+++
T Consensus 136 ---------------------------------------e~fDrIvSvg-mfEhvg~-~~~~~ff~~~~~~L~-~~G~~l 173 (283)
T COG2230 136 ---------------------------------------EPFDRIVSVG-MFEHVGK-ENYDDFFKKVYALLK-PGGRML 173 (283)
T ss_pred ---------------------------------------cccceeeehh-hHHHhCc-ccHHHHHHHHHhhcC-CCceEE
Confidence 3499999986 6666655 678999999999999 899999
Q ss_pred Eec
Q 045407 275 MDL 277 (382)
Q Consensus 275 fDl 277 (382)
+=.
T Consensus 174 lh~ 176 (283)
T COG2230 174 LHS 176 (283)
T ss_pred EEE
Confidence 833
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=105.63 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=75.2
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..|++... ..+|+|||+|++|+++|+++... . +..++.++++|+.+...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-~---g~~~v~~~~~d~~~~~~----------- 142 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-L---GLDNVIVIVGDGTQGWE----------- 142 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-C---CCCCeEEEECCcccCCc-----------
Confidence 35799999999999999998853 35699999999999999987532 2 23478999999865430
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
...+||+|++.... ..+...+.+.|+ |||+
T Consensus 143 ---------------------------------------~~~~fD~Ii~~~~~----------~~~~~~~~~~L~-~gG~ 172 (215)
T TIGR00080 143 ---------------------------------------PLAPYDRIYVTAAG----------PKIPEALIDQLK-EGGI 172 (215)
T ss_pred ---------------------------------------ccCCCCEEEEcCCc----------ccccHHHHHhcC-cCcE
Confidence 13579999875421 122345778898 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
||+-+.
T Consensus 173 lv~~~~ 178 (215)
T TIGR00080 173 LVMPVG 178 (215)
T ss_pred EEEEEc
Confidence 999764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-10 Score=104.52 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=74.7
Q ss_pred CcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..+++.-. ..+|+|+|+|++|+++|+++... .+- ..++.++++|..+...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~-~~~--~~~v~~~~~d~~~~~~------------ 138 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGY--WGVVEVYHGDGKRGLE------------ 138 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCC--CCcEEEEECCcccCCc------------
Confidence 4799999999999999988632 35899999999999999987422 111 1268999999865430
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+||+|++.... ..+. ..+++.|+ |||++
T Consensus 139 --------------------------------------~~~~fD~Ii~~~~~-~~~~---------~~l~~~L~-~gG~l 169 (205)
T PRK13944 139 --------------------------------------KHAPFDAIIVTAAA-STIP---------SALVRQLK-DGGVL 169 (205)
T ss_pred --------------------------------------cCCCccEEEEccCc-chhh---------HHHHHhcC-cCcEE
Confidence 13579999987643 3222 35678899 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
|+.+..
T Consensus 170 vi~~~~ 175 (205)
T PRK13944 170 VIPVEE 175 (205)
T ss_pred EEEEcC
Confidence 998753
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=110.66 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=74.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++.|. .+|+|+|+|+.||+.|+++.... + -..++.++.++...+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n-~--~~~~~~~~~~~~~~~~-------------- 222 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN-Q--VSDRLQVKLIYLEQPI-------------- 222 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-C--CCcceEEEeccccccc--------------
Confidence 5799999999999999999886 48999999999999999975321 1 1124555655532111
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
..+||+|+|-. + ...+...+..+++.|+ |||+|+
T Consensus 223 --------------------------------------~~~fDlVvan~-----~--~~~l~~ll~~~~~~Lk-pgG~li 256 (288)
T TIGR00406 223 --------------------------------------EGKADVIVANI-----L--AEVIKELYPQFSRLVK-PGGWLI 256 (288)
T ss_pred --------------------------------------CCCceEEEEec-----C--HHHHHHHHHHHHHHcC-CCcEEE
Confidence 35799999842 1 2467789999999999 999999
Q ss_pred Ee
Q 045407 275 MD 276 (382)
Q Consensus 275 fD 276 (382)
+-
T Consensus 257 ~s 258 (288)
T TIGR00406 257 LS 258 (288)
T ss_pred EE
Confidence 94
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=100.90 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcc-eEEE
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSR-ISLF 172 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R-I~l~ 172 (382)
|..|..++...+.. .. ...|||+|||+|.++..+++++ .+|+|+|+|++|++.|+++... .+- ..+ +.++
T Consensus 8 p~~~~~~l~~~~~~-~~---~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~-~~~--~~~~~~~~ 78 (188)
T PRK14968 8 PAEDSFLLAENAVD-KK---GDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKL-NNI--RNNGVEVI 78 (188)
T ss_pred cchhHHHHHHhhhc-cC---CCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHH-cCC--CCcceEEE
Confidence 44555555555543 12 3469999999999999999996 5799999999999999887422 111 112 8889
Q ss_pred eccCCCch
Q 045407 173 HGNVLQPL 180 (382)
Q Consensus 173 ~gDV~~~~ 180 (382)
++|+.++.
T Consensus 79 ~~d~~~~~ 86 (188)
T PRK14968 79 RSDLFEPF 86 (188)
T ss_pred eccccccc
Confidence 99986543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-10 Score=100.87 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=87.3
Q ss_pred HHHHhhcCChhhHHH---HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccc
Q 045407 86 LYQQSVQSPKGDISY---LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKV 161 (382)
Q Consensus 86 LYd~~vq~p~~Di~y---l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl 161 (382)
+|+.+...+ +...+ +..+..++..-+....|||+|||||.++..++++. ...+|+|+|+|+.+ ..
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~---- 71 (188)
T TIGR00438 3 YYQKAKKEK-YRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI---- 71 (188)
T ss_pred HHHHHhhcC-CchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC----
Confidence 566666555 44322 23344444332334579999999999999998875 44579999999965 11
Q ss_pred cCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE
Q 045407 162 GADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA 241 (382)
Q Consensus 162 ~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a 241 (382)
..+.++++|+.++... ..+. ..+..+.||+|++
T Consensus 72 -----~~i~~~~~d~~~~~~~-----------~~l~-------------------------------~~~~~~~~D~V~~ 104 (188)
T TIGR00438 72 -----ENVDFIRGDFTDEEVL-----------NKIR-------------------------------ERVGDDKVDVVMS 104 (188)
T ss_pred -----CCceEEEeeCCChhHH-----------HHHH-------------------------------HHhCCCCccEEEc
Confidence 2478899998775410 0000 0011356999997
Q ss_pred cc---c----hhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCc
Q 045407 242 FN---Y----SCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTS 282 (382)
Q Consensus 242 fn---~----S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s 282 (382)
-. + ++.++...+.+...|+.+++.|+ |||.|++-++.+..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~~~~ 151 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQGEE 151 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEccCcc
Confidence 32 1 12222233456789999999999 99999997665443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=86.69 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=79.5
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|+|+|||+|.++..+++. ...+++|+|+|+.++.++++.... ....++.++++|+.++..
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAA----LLADNVEVLKGDAEELPP-------------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhc----ccccceEEEEcChhhhcc--------------
Confidence 3789999999999999983 335899999999999999853211 123579999999876651
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
...+++|+|++... +.++ .+....+++.+.+.|+ +||+|++
T Consensus 62 -----------------------------------~~~~~~d~i~~~~~-~~~~--~~~~~~~l~~~~~~l~-~~g~~~~ 102 (107)
T cd02440 62 -----------------------------------EADESFDVIISDPP-LHHL--VEDLARFLEEARRLLK-PGGVLVL 102 (107)
T ss_pred -----------------------------------ccCCceEEEEEccc-eeeh--hhHHHHHHHHHHHHcC-CCCEEEE
Confidence 01467999988763 3332 5788999999999998 9999997
Q ss_pred e
Q 045407 276 D 276 (382)
Q Consensus 276 D 276 (382)
-
T Consensus 103 ~ 103 (107)
T cd02440 103 T 103 (107)
T ss_pred E
Confidence 4
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=113.43 Aligned_cols=193 Identities=16% Similarity=0.217 Sum_probs=118.2
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC----C---CcceEEEeccCCCchhhhhc
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD----G---YSRISLFHGNVLQPLEAKLV 185 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d----~---~~RI~l~~gDV~~~~~~~~~ 185 (382)
....|||||||-|-=..-|.+.+.. .++|+|+|.++|+.|+++... +... . .-...++.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~-~~~~~~~~~~~~~f~a~f~~~D~f~~~----- 134 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQ-LKKRNNSKQYRFDFIAEFIAADCFSES----- 134 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHH-HHTSTT-HTSEECCEEEEEESTTCCSH-----
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHH-hccccccccccccchhheeccccccch-----
Confidence 3578999999998888999999884 999999999999999999722 1100 0 023556777754332
Q ss_pred ccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCC--CCCccEEEEccchhcccCChhHHHHHHHHHH
Q 045407 186 RYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS--LPARDIICAFNYSCCCLHKRADLVLYFKHVL 263 (382)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~ 263 (382)
+. ..+. ..+||+|.|.+.-+-.|.+++.....|++|.
T Consensus 135 ------------l~-----------------------------~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs 173 (331)
T PF03291_consen 135 ------------LR-----------------------------EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVS 173 (331)
T ss_dssp ------------HH-----------------------------CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHH
T ss_pred ------------hh-----------------------------hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHH
Confidence 10 0011 2479999999977778889999999999999
Q ss_pred hhccCCCcEEEEeccCCCchhhhhHhh------hccCC--eEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE
Q 045407 264 HALSKKGGIFVMDLYGGTSSEQKLRLQ------RRFAN--FTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW 335 (382)
Q Consensus 264 ~~L~~pGGiFVfDl~gg~s~e~kl~~~------R~~~~--~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~ 335 (382)
.+|+ |||+||.=+..+.....+++.. ..+++ +...|+...+-|. .-...+|++.+- .....+
T Consensus 174 ~~Lk-~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~---fG~~Y~F~L~~~---v~~~~E--- 243 (331)
T PF03291_consen 174 SLLK-PGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPP---FGAKYDFYLEDA---VDDCPE--- 243 (331)
T ss_dssp HTEE-EEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCSS--C---TTEEEEEEETTC---SSCEEE---
T ss_pred HhcC-CCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccCCCCC---CCcEEEEEecCc---CCCCce---
Confidence 9999 9999999655433333333221 11222 3333555312221 123445555332 122223
Q ss_pred EecCHHHHHHHHHHcCCcEEEEEeccCchh
Q 045407 336 RLWSLPEIKDCLEEAGFRSVHFWLREMPDA 365 (382)
Q Consensus 336 Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~ 365 (382)
-|-..+-+.+++++.||..|.. ..+.+-
T Consensus 244 YlV~~~~~~~la~eyGLeLV~~--~~F~ef 271 (331)
T PF03291_consen 244 YLVPFDFFVKLAKEYGLELVEK--KNFHEF 271 (331)
T ss_dssp E---HHHHHHHHHHTTEEEEEE--EEHHHH
T ss_pred EEeeHHHHHHHHHHcCCEEEEe--CChHHH
Confidence 5778899999999999998864 344444
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-11 Score=116.49 Aligned_cols=118 Identities=20% Similarity=0.198 Sum_probs=85.8
Q ss_pred hhhH-HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDI-SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di-~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.|.+ .++...+..-..|+ -.|+||||||||+.+.+|-.+-- +.+|||||..||+.|.+|- .|. .|++
T Consensus 107 ~Y~vP~~l~emI~~~~~g~-F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg-------~YD--~L~~ 174 (287)
T COG4976 107 GYSVPELLAEMIGKADLGP-FRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG-------LYD--TLYV 174 (287)
T ss_pred cCccHHHHHHHHHhccCCc-cceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc-------chH--HHHH
Confidence 4444 34444444322333 57899999999999999876664 5999999999999999984 232 3566
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
++...+.. +....+||+|++. +.+-||-
T Consensus 175 Aea~~Fl~------------------------------------------------~~~~er~DLi~Aa-DVl~YlG--- 202 (287)
T COG4976 175 AEAVLFLE------------------------------------------------DLTQERFDLIVAA-DVLPYLG--- 202 (287)
T ss_pred HHHHHHhh------------------------------------------------hccCCcccchhhh-hHHHhhc---
Confidence 66543331 0124679999987 7999986
Q ss_pred HHHHHHHHHHhhccCCCcEEEEec
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+|...|--|..+|+ |||+|.|-+
T Consensus 203 ~Le~~~~~aa~~L~-~gGlfaFSv 225 (287)
T COG4976 203 ALEGLFAGAAGLLA-PGGLFAFSV 225 (287)
T ss_pred chhhHHHHHHHhcC-CCceEEEEe
Confidence 56778889999999 999999955
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=103.76 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=77.2
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..|||+|||||.++..++++. +..+|+|||+++ |. . + ..+.++++|+.++..- ++|.
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~------~---~-----~~v~~i~~D~~~~~~~-------~~i~ 110 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD------P---I-----VGVDFLQGDFRDELVL-------KALL 110 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc------C---C-----CCcEEEecCCCChHHH-------HHHH
Confidence 479999999999999998885 445899999998 31 1 1 2488999999886510 0000
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh--------HHHHHHHHHHhh
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA--------DLVLYFKHVLHA 265 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~--------dL~~yFr~V~~~ 265 (382)
.. +....||+|+|-. +.++..++. .+...++.+++.
T Consensus 111 ~~-----------------------------------~~~~~~D~V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~ 154 (209)
T PRK11188 111 ER-----------------------------------VGDSKVQVVMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDV 154 (209)
T ss_pred HH-----------------------------------hCCCCCCEEecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1246799999833 333332211 135789999999
Q ss_pred ccCCCcEEEEeccCCCchhh
Q 045407 266 LSKKGGIFVMDLYGGTSSEQ 285 (382)
Q Consensus 266 L~~pGGiFVfDl~gg~s~e~ 285 (382)
|+ |||+|++-++.+..+..
T Consensus 155 Lk-pGG~~vi~~~~~~~~~~ 173 (209)
T PRK11188 155 LA-PGGSFVVKVFQGEGFDE 173 (209)
T ss_pred cC-CCCEEEEEEecCcCHHH
Confidence 99 99999998887665443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-10 Score=105.37 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=48.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+.++||+|||+|.++..+++..+..+|+|+|+|+.|+++|++|... ..+.++++|+.++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~-------~~~~~~~~D~~~~ 145 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD-------AGGTVHEGDLYDA 145 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-------cCCEEEEeechhh
Confidence 3479999999999999999886656899999999999999998522 1247899998654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.3e-10 Score=113.07 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=51.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..|++..+..+|+|+|+|++||++|++|... .+.++.++++|+.++.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~-----~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD-----LGARVEFAHGSWFDTD 313 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-----cCCcEEEEEcchhccc
Confidence 479999999999999999887777999999999999999998532 1248999999986643
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-10 Score=105.66 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=38.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
+.+|||+|||||.++..+++.|.. .|+|+|+|+.|++.|+++.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHH
Confidence 457999999999999999998874 6999999999999999985
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-10 Score=106.88 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=89.1
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
.+..|.-|||+|||||+-+..|...| +..+|||+|+.||+.|++.-++ -.|+.+||-+..
T Consensus 47 p~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~e---------gdlil~DMG~Gl--------- 106 (270)
T KOG1541|consen 47 PGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELE---------GDLILCDMGEGL--------- 106 (270)
T ss_pred CCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhh---------cCeeeeecCCCC---------
Confidence 44468889999999999999999999 4799999999999999986432 247889997654
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc-------CChhHHHHHHHHH
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL-------HKRADLVLYFKHV 262 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL-------~~r~dL~~yFr~V 262 (382)
.|..++||.|++....=|-+ ....-|..+|...
T Consensus 107 ----------------------------------------pfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tL 146 (270)
T KOG1541|consen 107 ----------------------------------------PFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTL 146 (270)
T ss_pred ----------------------------------------CCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhh
Confidence 14578899998765332111 2345688899999
Q ss_pred HhhccCCCcEEEEeccCCCchh
Q 045407 263 LHALSKKGGIFVMDLYGGTSSE 284 (382)
Q Consensus 263 ~~~L~~pGGiFVfDl~gg~s~e 284 (382)
|.+|+ +|+.+||-+|..+...
T Consensus 147 y~~l~-rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 147 YSCLK-RGARAVLQFYPENEAQ 167 (270)
T ss_pred hhhhc-cCceeEEEecccchHH
Confidence 99999 9999999999766543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-10 Score=106.61 Aligned_cols=110 Identities=16% Similarity=0.088 Sum_probs=82.7
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE-EEeccCCCchhhhhcccc
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS-LFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~-l~~gDV~~~~~~~~~~~~ 188 (382)
+...-..|||+|||||.. ..+..--+..+||+||-++.|-++|.++..++ ....+. |++++-.+++.
T Consensus 73 gk~~K~~vLEvgcGtG~N-fkfy~~~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~------- 140 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGAN-FKFYPWKPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQ------- 140 (252)
T ss_pred cccCccceEEecccCCCC-cccccCCCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcc-------
Confidence 333334689999999998 44444223468999999999999999987553 234666 88888766652
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccC
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
| ....+|+|||.+ +|-+-++.++.++++.+.|+
T Consensus 141 ---------l---------------------------------~d~s~DtVV~Tl----vLCSve~~~k~L~e~~rlLR- 173 (252)
T KOG4300|consen 141 ---------L---------------------------------ADGSYDTVVCTL----VLCSVEDPVKQLNEVRRLLR- 173 (252)
T ss_pred ---------c---------------------------------ccCCeeeEEEEE----EEeccCCHHHHHHHHHHhcC-
Confidence 1 257799999997 33355788999999999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||+++|==|
T Consensus 174 pgG~iifiEH 183 (252)
T KOG4300|consen 174 PGGRIIFIEH 183 (252)
T ss_pred CCcEEEEEec
Confidence 9999999444
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-10 Score=108.48 Aligned_cols=120 Identities=15% Similarity=0.162 Sum_probs=86.0
Q ss_pred CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 93 SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 93 ~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
-|.|-.+++.+++... .++. .++|+|||||.-+.-+| .-+. .|||+|+|++||..|+++. ++...
T Consensus 16 RP~YPtdw~~~ia~~~-~~h~--~a~DvG~G~Gqa~~~ia-e~~k-~VIatD~s~~mL~~a~k~~----------~~~y~ 80 (261)
T KOG3010|consen 16 RPSYPTDWFKKIASRT-EGHR--LAWDVGTGNGQAARGIA-EHYK-EVIATDVSEAMLKVAKKHP----------PVTYC 80 (261)
T ss_pred CCCCcHHHHHHHHhhC-CCcc--eEEEeccCCCcchHHHH-Hhhh-hheeecCCHHHHHHhhcCC----------Ccccc
Confidence 4778899999998864 3332 68899999995544444 4464 7999999999999999874 22222
Q ss_pred ecc--CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCC--CCCccEEEEccchhcc
Q 045407 173 HGN--VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS--LPARDIICAFNYSCCC 248 (382)
Q Consensus 173 ~gD--V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fDiV~afn~S~~y 248 (382)
+.- |.+-+ |-++. ...+|+|+|.--.+++
T Consensus 81 ~t~~~ms~~~-----------------------------------------------~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 81 HTPSTMSSDE-----------------------------------------------MVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred cCCccccccc-----------------------------------------------cccccCCCcceeeehhhhhHHhh
Confidence 211 11000 00111 4679999999878876
Q ss_pred cCChhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 249 LHKRADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 249 L~~r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
+|.+.++.|++.|+|+||++.+=.|+
T Consensus 114 -----dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 -----DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred -----chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 89999999999999999999985554
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.5e-10 Score=106.68 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=81.6
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC--CCCcceEEEeccCCCchhhhhcccch
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA--DGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
..|.+||++|||+|.++.++++...-.+|++||||++|++.|++.... +.. -...|+.++.+|.++...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~-~~~~~~~d~rv~v~~~Da~~~l~-------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE-IAGGAYDDPRVELVIGDGIKFVA-------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH-hccccccCCceEEEECchHHHHh--------
Confidence 347899999999999999999874335899999999999999986422 111 123589999999876441
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhcc
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALS 267 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~ 267 (382)
....+||+|++-.+.-. .....| ..+|+.+++.|+
T Consensus 146 -----------------------------------------~~~~~yDvIi~D~~dp~--~~~~~l~t~ef~~~~~~~L~ 182 (283)
T PRK00811 146 -----------------------------------------ETENSFDVIIVDSTDPV--GPAEGLFTKEFYENCKRALK 182 (283)
T ss_pred -----------------------------------------hCCCcccEEEECCCCCC--CchhhhhHHHHHHHHHHhcC
Confidence 01357999998432111 111222 678899999999
Q ss_pred CCCcEEEEec
Q 045407 268 KKGGIFVMDL 277 (382)
Q Consensus 268 ~pGGiFVfDl 277 (382)
|||+||+-.
T Consensus 183 -~gGvlv~~~ 191 (283)
T PRK00811 183 -EDGIFVAQS 191 (283)
T ss_pred -CCcEEEEeC
Confidence 999999853
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=105.74 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=78.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..|||.|||||.++++.+..|. +|+|+|+|+.|++.|++|... . +...+.++++|+.+++
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~-~---g~~~i~~~~~D~~~l~-------------- 243 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEH-Y---GIEDFFVKRGDATKLP-------------- 243 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHH-h---CCCCCeEEecchhcCC--------------
Confidence 4799999999999999988874 699999999999999987532 1 2223789999998766
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc-chh--c-ccCCh-hHHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN-YSC--C-CLHKR-ADLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn-~S~--~-yL~~r-~dL~~yFr~V~~~L~~p 269 (382)
+ ....||+|++-- |.. . --+.. .-....++.+++.|+ |
T Consensus 244 ---~---------------------------------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~ 286 (329)
T TIGR01177 244 ---L---------------------------------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-S 286 (329)
T ss_pred ---c---------------------------------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-C
Confidence 1 135689888721 111 0 00111 234788999999999 9
Q ss_pred CcEEEEeccC
Q 045407 270 GGIFVMDLYG 279 (382)
Q Consensus 270 GGiFVfDl~g 279 (382)
||.+++-+-.
T Consensus 287 gG~lv~~~~~ 296 (329)
T TIGR01177 287 EGWIVYAVPT 296 (329)
T ss_pred CcEEEEEEcC
Confidence 9999986643
|
This family is found exclusively in the Archaea. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=97.76 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=74.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|++.+. +|+|+|+|++|++.|+++... .+...+.++++|..+..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~------------- 139 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQ----LGLHNVSVRHGDGWKGW------------- 139 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHH----CCCCceEEEECCcccCC-------------
Confidence 35799999999999998888863 799999999999999987432 13345899999975432
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ...+||+|++.+ ++.++ .+.+++.|+ |||++
T Consensus 140 ----~---------------------------------~~~~fD~I~~~~-~~~~~---------~~~l~~~L~-~gG~l 171 (212)
T PRK00312 140 ----P---------------------------------AYAPFDRILVTA-AAPEI---------PRALLEQLK-EGGIL 171 (212)
T ss_pred ----C---------------------------------cCCCcCEEEEcc-Cchhh---------hHHHHHhcC-CCcEE
Confidence 0 135799999865 33322 245678999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+.+.
T Consensus 172 v~~~~ 176 (212)
T PRK00312 172 VAPVG 176 (212)
T ss_pred EEEEc
Confidence 99875
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=106.37 Aligned_cols=57 Identities=14% Similarity=0.014 Sum_probs=48.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..++++....+|+|||+|+.|+++|+++. .++.++++|++++.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~ 122 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFE 122 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhc
Confidence 4699999999999999988764468999999999999999863 25789999997654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=110.03 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=82.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+||+|||+|.++..+|++.+...++|||+++.|++.|+++... .+-.+|.++++|+..+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~----~gL~NV~~i~~DA~~ll~------------- 186 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL----LNLKNLLIINYDARLLLE------------- 186 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH----cCCCcEEEEECCHHHhhh-------------
Confidence 368899999999999999999989999999999999999988533 233469999999865431
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh---HHHHHHHHHHhhccCCCc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA---DLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~---dL~~yFr~V~~~L~~pGG 271 (382)
. ++...+|.|++. +..=|..++. .....++.+++.|+ |||
T Consensus 187 ---~--------------------------------~~~~s~D~I~ln-FPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG 229 (390)
T PRK14121 187 ---L--------------------------------LPSNSVEKIFVH-FPVPWDKKPHRRVISEDFLNEALRVLK-PGG 229 (390)
T ss_pred ---h--------------------------------CCCCceeEEEEe-CCCCccccchhhccHHHHHHHHHHHcC-CCc
Confidence 0 224678999864 3444543332 23578999999999 999
Q ss_pred EEEE
Q 045407 272 IFVM 275 (382)
Q Consensus 272 iFVf 275 (382)
.|.+
T Consensus 230 ~l~l 233 (390)
T PRK14121 230 TLEL 233 (390)
T ss_pred EEEE
Confidence 9998
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=113.44 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=50.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
+.+|||+|||||.+++.+++.-+..+|+|+|+|+.||++|++|... .+ -..+|.++++|+.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~-~~--l~~~v~~~~~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK-YE--VTDRIQIIHSNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH-cC--Cccceeeeecchhh
Confidence 4579999999999999999887667899999999999999998532 11 11379999999854
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=101.80 Aligned_cols=179 Identities=19% Similarity=0.248 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhhC--CCCCCcccccCCCccHhHHHHHHhCCC--CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 97 DISYLQKFFLIYVG--GRQPLHLQEDFCGTALLSTEWLRSDSR--RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 97 Di~yl~~~f~~y~g--gr~p~~LLEl~CGTG~LS~elar~g~~--~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
|-.||.+-|..+.. ...|..|||+|||.|...-.+++.-+. -.|.+.|.||.+++.-+++..- .-+++.-+
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~af 127 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAF 127 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhccc
Confidence 55788877766653 233457999999999999999998877 7899999999999998887422 12466555
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
..|...+.+ . .-...+.+|+|++.+ .+-=++ +
T Consensus 128 v~Dlt~~~~----------------~------------------------------~~~~~~svD~it~IF-vLSAi~-p 159 (264)
T KOG2361|consen 128 VWDLTSPSL----------------K------------------------------EPPEEGSVDIITLIF-VLSAIH-P 159 (264)
T ss_pred ceeccchhc----------------c------------------------------CCCCcCccceEEEEE-EEeccC-h
Confidence 556554441 0 001246799999876 444434 5
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeee
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFS 332 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fs 332 (382)
+.....+++++..|+ |||.++|==||-... .+.| |. ..-+++-.|.+..+. ..
T Consensus 160 ek~~~a~~nl~~llK-PGG~llfrDYg~~Dl----aqlR-F~---------------~~~~i~~nfYVRgDG-T~----- 212 (264)
T KOG2361|consen 160 EKMQSVIKNLRTLLK-PGGSLLFRDYGRYDL----AQLR-FK---------------KGQCISENFYVRGDG-TR----- 212 (264)
T ss_pred HHHHHHHHHHHHHhC-CCcEEEEeecccchH----HHHh-cc---------------CCceeecceEEccCC-ce-----
Confidence 788999999999999 999999944442222 1222 11 112344555554332 21
Q ss_pred eeEEecCHHHHHHHHHHcCCcEEEE
Q 045407 333 YNWRLWSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 333 y~~Rlysl~EI~d~LeeAGF~~V~v 357 (382)
...|+.+++..++.+|||..+..
T Consensus 213 --~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 213 --AYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred --eeeccHHHHHHHHHhcccchhcc
Confidence 13678999999999999988764
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-09 Score=100.05 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=88.6
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS 170 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~ 170 (382)
+-++....||..+.... .|.++||+|||||.-+..+++. +...+|+++|+|++++++|+++... .+- ..+|.
T Consensus 51 ~v~~~~g~~L~~l~~~~----~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-~gl--~~~i~ 123 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIM----NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-AGV--DHKIN 123 (234)
T ss_pred ccCHHHHHHHHHHHHHh----CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEE
Confidence 33444446666655542 2568999999999988877765 3356899999999999999998432 221 24799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
+++||..+... . +. .+...++||+|++=.+
T Consensus 124 ~~~gda~~~L~-------------~--l~-----------------------------~~~~~~~fD~VfiDa~------ 153 (234)
T PLN02781 124 FIQSDALSALD-------------Q--LL-----------------------------NNDPKPEFDFAFVDAD------ 153 (234)
T ss_pred EEEccHHHHHH-------------H--HH-----------------------------hCCCCCCCCEEEECCC------
Confidence 99999876431 0 00 0000257999977432
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
......||..+.+.|+ |||++|+|
T Consensus 154 -k~~y~~~~~~~~~ll~-~GG~ii~d 177 (234)
T PLN02781 154 -KPNYVHFHEQLLKLVK-VGGIIAFD 177 (234)
T ss_pred -HHHHHHHHHHHHHhcC-CCeEEEEE
Confidence 2566789999999999 99999997
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.5e-10 Score=104.89 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=87.4
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~ 188 (382)
+.-.-|..|.|||||||..+..|+++-+.++++|||-|++||+-|+++. ..++|..+|+++..
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w~-------- 88 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTWK-------- 88 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhcC--------
Confidence 3444467899999999999999999999999999999999999998874 35789999998776
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccC
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
+....|+++| |.++-||.+- ...|.+....|.
T Consensus 89 -------------------------------------------p~~~~dllfa-NAvlqWlpdH---~~ll~rL~~~L~- 120 (257)
T COG4106 89 -------------------------------------------PEQPTDLLFA-NAVLQWLPDH---PELLPRLVSQLA- 120 (257)
T ss_pred -------------------------------------------CCCccchhhh-hhhhhhcccc---HHHHHHHHHhhC-
Confidence 1356788877 5688888754 567889999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||++-.-|=
T Consensus 121 Pgg~LAVQmP 130 (257)
T COG4106 121 PGGVLAVQMP 130 (257)
T ss_pred CCceEEEECC
Confidence 9999988653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=101.95 Aligned_cols=122 Identities=23% Similarity=0.258 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcc-eEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSR-ISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R-I~l~~gDV~ 177 (382)
+|+......|--+....+|||||||.|.+...|++.|.+...+|||+|+.+++.|...+.. ++.+. |.|-|.|+.
T Consensus 53 ~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~----~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 53 DWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER----DGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh----cCCCcceeEEEeecc
Confidence 5555544322112223378999999999999999999998899999999999998876532 33333 999999999
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccc--hhcccCChh
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNY--SCCCLHKRA 253 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~--S~~yL~~r~ 253 (382)
+|.+ + .++||+|.- ..+ |++=-.-..
T Consensus 129 ~~~~----------------~----------------------------------~~qfdlvlDKGT~DAisLs~d~~~~ 158 (227)
T KOG1271|consen 129 DPDF----------------L----------------------------------SGQFDLVLDKGTLDAISLSPDGPVG 158 (227)
T ss_pred CCcc----------------c----------------------------------ccceeEEeecCceeeeecCCCCccc
Confidence 9873 1 334444431 111 222111224
Q ss_pred HHHHHHHHHHhhccCCCcEEEE
Q 045407 254 DLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVf 275 (382)
-+..|+-.|...|+ ||||||+
T Consensus 159 r~~~Y~d~v~~ll~-~~gifvI 179 (227)
T KOG1271|consen 159 RLVVYLDSVEKLLS-PGGIFVI 179 (227)
T ss_pred ceeeehhhHhhccC-CCcEEEE
Confidence 55889999999999 9999999
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=105.34 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE----Eec
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL----FHG 174 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l----~~g 174 (382)
.++.+.+.+|+. .+..+||+|||||.||+..++.|.. .|+|+|+||-+++.|++|... ..|.. -..
T Consensus 150 ~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~-------N~v~~~~~~~~~ 219 (300)
T COG2264 150 SLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARL-------NGVELLVQAKGF 219 (300)
T ss_pred HHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHH-------cCCchhhhcccc
Confidence 556677777653 4678999999999999999999984 899999999999999998532 12221 111
Q ss_pred cCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH
Q 045407 175 NVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254 (382)
Q Consensus 175 DV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d 254 (382)
+.... ....+||+|||-. +. .-
T Consensus 220 ~~~~~---------------------------------------------------~~~~~~DvIVANI--LA-----~v 241 (300)
T COG2264 220 LLLEV---------------------------------------------------PENGPFDVIVANI--LA-----EV 241 (300)
T ss_pred cchhh---------------------------------------------------cccCcccEEEehh--hH-----HH
Confidence 11100 0135899999865 22 46
Q ss_pred HHHHHHHHHhhccCCCcEEEE
Q 045407 255 LVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVf 275 (382)
++.....++.+|+ |||++|+
T Consensus 242 l~~La~~~~~~lk-pgg~lIl 261 (300)
T COG2264 242 LVELAPDIKRLLK-PGGRLIL 261 (300)
T ss_pred HHHHHHHHHHHcC-CCceEEE
Confidence 7788889999998 9999999
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=100.87 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=73.1
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..|||+|||||..+..+++.- +..+|++||+|+.|++...+.+.. ..+|.++.+|++.+..-.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~---------- 197 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYR---------- 197 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhh----------
Confidence 369999999999999999873 345899999999766444433211 135788999987653100
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+..+.+|+|++-+. .+.+...+..++.+.|+ |||.|
T Consensus 198 -------------------------------------~~~~~vDvV~~Dva------~pdq~~il~~na~r~LK-pGG~~ 233 (293)
T PTZ00146 198 -------------------------------------MLVPMVDVIFADVA------QPDQARIVALNAQYFLK-NGGHF 233 (293)
T ss_pred -------------------------------------cccCCCCEEEEeCC------CcchHHHHHHHHHHhcc-CCCEE
Confidence 01346999987662 23455566678999999 99999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
|+.+
T Consensus 234 vI~i 237 (293)
T PTZ00146 234 IISI 237 (293)
T ss_pred EEEE
Confidence 9963
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-09 Score=101.85 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=49.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
+|+|+|||||.+++.++...+..+|+|+|+|+++|++|++|... . +-.++.++++|...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~-~---~l~~~~~~~~dlf~ 171 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER-N---GLVRVLVVQSDLFE 171 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH-c---CCccEEEEeeeccc
Confidence 79999999999999999999988999999999999999998643 1 11467777776433
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=107.97 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=78.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||..+..+++.+...+|+|+|+|+.||+.++++... ++ ..+.++++|+.++..
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~-~g----~~~~~~~~D~~~~~~------------- 307 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR-LG----LKATVIVGDARDPAQ------------- 307 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH-cC----CCeEEEEcCcccchh-------------
Confidence 479999999999999999988656899999999999999988532 22 247899999877541
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhc---------ccCChhHH-------H
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCC---------CLHKRADL-------V 256 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~---------yL~~r~dL-------~ 256 (382)
. +...+||+|++- |...+ |..+.+++ .
T Consensus 308 ---~--------------------------------~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~ 352 (427)
T PRK10901 308 ---W--------------------------------WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQS 352 (427)
T ss_pred ---h--------------------------------cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHH
Confidence 0 113468998831 11222 23333443 4
Q ss_pred HHHHHHHhhccCCCcEEEE
Q 045407 257 LYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVf 275 (382)
..++++++.|+ |||++|+
T Consensus 353 ~iL~~a~~~Lk-pGG~lvy 370 (427)
T PRK10901 353 EILDALWPLLK-PGGTLLY 370 (427)
T ss_pred HHHHHHHHhcC-CCCEEEE
Confidence 68999999999 9999997
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-09 Score=97.76 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc--c------cCCCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK--V------GADGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k--l------~~d~~~RI~ 170 (382)
.+|.+++... ......+||..|||.|.-+.-||+.|+ +|+|||||+.+++++.+.+... + ....+.+|.
T Consensus 30 p~L~~~~~~l-~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 30 EFLVKHFSKL-NINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred HHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 5676776652 222235799999999999999999996 5999999999999997754110 0 001235799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
++++|+.+++... -..++||+|.=-. ++|-|
T Consensus 107 ~~~gD~f~l~~~~-----------------------------------------------~~~~~fD~VyDra-~~~Al- 137 (226)
T PRK13256 107 IYVADIFNLPKIA-----------------------------------------------NNLPVFDIWYDRG-AYIAL- 137 (226)
T ss_pred EEEccCcCCCccc-----------------------------------------------cccCCcCeeeeeh-hHhcC-
Confidence 9999998775100 0136799976553 55666
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.++.=.+|.+++.+.|+ |||.++.
T Consensus 138 pp~~R~~Y~~~l~~lL~-pgg~lll 161 (226)
T PRK13256 138 PNDLRTNYAKMMLEVCS-NNTQILL 161 (226)
T ss_pred CHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 45667899999999999 9998877
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=100.06 Aligned_cols=163 Identities=19% Similarity=0.212 Sum_probs=101.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.++|||+|||.|-++-+++++|++ .|+|+|=++--+. +-..++++-.. ..++.++---|.+++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~--QF~~i~~~lg~-~~~~~~lplgvE~Lp------------- 178 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYL--QFEAIKHFLGQ-DPPVFELPLGVEDLP------------- 178 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHH--HHHHHHHHhCC-CccEEEcCcchhhcc-------------
Confidence 347999999999999999999985 8999998885443 33332222110 011222211122211
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ...||+|+|+. .+-|.. +-...++.+.++|+ +||.+
T Consensus 179 ----~----------------------------------~~~FDtVF~MG-VLYHrr---~Pl~~L~~Lk~~L~-~gGeL 215 (315)
T PF08003_consen 179 ----N----------------------------------LGAFDTVFSMG-VLYHRR---SPLDHLKQLKDSLR-PGGEL 215 (315)
T ss_pred ----c----------------------------------cCCcCEEEEee-ehhccC---CHHHHHHHHHHhhC-CCCEE
Confidence 0 46799999997 444433 44778899999999 99999
Q ss_pred EEecc--CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 274 VMDLY--GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 274 VfDl~--gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|++-. .|. ++..++ |..+-.. .+. .|=+=|+.-++.+|+.||
T Consensus 216 vLETlvi~g~------------~~~~L~-------P~~rYa~-------------m~n----v~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 216 VLETLVIDGD------------ENTVLV-------PEDRYAK-------------MRN----VWFIPSVAALKNWLERAG 259 (315)
T ss_pred EEEEeeecCC------------CceEEc-------cCCcccC-------------CCc----eEEeCCHHHHHHHHHHcC
Confidence 99854 110 111111 1111110 011 234568889999999999
Q ss_pred CcEEEEEeccCchhhhhcccc
Q 045407 352 FRSVHFWLREMPDAREMRNTE 372 (382)
Q Consensus 352 F~~V~v~~r~~~~~~~~~~~~ 372 (382)
|+.|++....--+..|-|.|+
T Consensus 260 F~~v~~v~~~~Tt~~EQR~T~ 280 (315)
T PF08003_consen 260 FKDVRCVDVSPTTIEEQRKTD 280 (315)
T ss_pred CceEEEecCccCCHHHhccCC
Confidence 999999865555566666654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=93.75 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=50.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++||+|||+|.++.++++++ .+|+|||+|+.|++.++++.. ...++.++++|+.+..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~------~~~~v~ii~~D~~~~~ 72 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFA------AADNLTVIHGDALKFD 72 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhc------cCCCEEEEECchhcCC
Confidence 479999999999999999996 479999999999999998752 1247999999998765
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.9e-09 Score=116.26 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=53.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccC-----------CCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGA-----------DGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~-----------d~~~RI~l~~gDV~~~~ 180 (382)
.+|+|+|||||.+++.+++..+..+|+|+|+|++||++|++|... .+.. ....||.|+++|+.++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 469999999999999999998877999999999999999998643 1110 11247999999997654
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-09 Score=100.25 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=81.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+||++|||+|.++.++++.....+|++||+|+++++.|+++... +. .-...++.++.+|.++...
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~-~~~~~~~~~v~i~~~D~~~~l~--------- 140 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPS-LAGSYDDPRVDLQIDDGFKFLA--------- 140 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHh-hcccccCCceEEEECchHHHHH---------
Confidence 347799999999999999999887545899999999999999986322 11 1123478888888755430
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH--HHHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~ 268 (382)
- ...+||+|++-.+.. ...... ...+|+.+++.|+
T Consensus 141 -------~---------------------------------~~~~yDvIi~D~~~~--~~~~~~l~~~ef~~~~~~~L~- 177 (270)
T TIGR00417 141 -------D---------------------------------TENTFDVIIVDSTDP--VGPAETLFTKEFYELLKKALN- 177 (270)
T ss_pred -------h---------------------------------CCCCccEEEEeCCCC--CCcccchhHHHHHHHHHHHhC-
Confidence 0 035799999855321 122222 3578899999999
Q ss_pred CCcEEEEec
Q 045407 269 KGGIFVMDL 277 (382)
Q Consensus 269 pGGiFVfDl 277 (382)
|||+|++..
T Consensus 178 pgG~lv~~~ 186 (270)
T TIGR00417 178 EDGIFVAQS 186 (270)
T ss_pred CCcEEEEcC
Confidence 999999963
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-09 Score=98.78 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+.....++ |.-....|+|||||||+|++..+-.|+ ++|+|||+|+++|+.|++|..+ ...+|.++.+|+++
T Consensus 32 a~il~~a~~~-g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-----l~g~v~f~~~dv~~ 104 (198)
T COG2263 32 AYILWVAYLR-GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-----LLGDVEFVVADVSD 104 (198)
T ss_pred HHHHHHHHHc-CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-----hCCceEEEEcchhh
Confidence 5665555442 322234699999999999999999998 4999999999999999998643 33589999999988
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
+.
T Consensus 105 ~~ 106 (198)
T COG2263 105 FR 106 (198)
T ss_pred cC
Confidence 77
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-09 Score=102.35 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=81.3
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+||++|||+|.++.++++...-.+|+.||||+++++.|++.... +. .-...|+.++.+|.+....
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~-~~~~~~dpRv~vi~~Da~~~l~--------- 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD-LAVGFDDPRVNLHIGDGVEFLK--------- 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh-hccccCCCceEEEEChHHHHHh---------
Confidence 448899999999999999999875445799999999999999997532 11 1123589999999765531
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH--HHHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~ 268 (382)
+.....||+|++-.+.-. ..... -..+|+.++++|+
T Consensus 160 ---------------------------------------~~~~~~yDvIi~D~~dp~--~~~~~L~t~ef~~~~~~~L~- 197 (308)
T PLN02366 160 ---------------------------------------NAPEGTYDAIIVDSSDPV--GPAQELFEKPFFESVARALR- 197 (308)
T ss_pred ---------------------------------------hccCCCCCEEEEcCCCCC--CchhhhhHHHHHHHHHHhcC-
Confidence 001346999987442211 11111 2568999999999
Q ss_pred CCcEEEEe
Q 045407 269 KGGIFVMD 276 (382)
Q Consensus 269 pGGiFVfD 276 (382)
|||+|+.-
T Consensus 198 pgGvlv~q 205 (308)
T PLN02366 198 PGGVVCTQ 205 (308)
T ss_pred CCcEEEEC
Confidence 99999873
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9e-09 Score=105.56 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=84.3
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||..|+.+++.- ...+|+++|+|+.||+.++++... + +...|.++++|++.++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-~---g~~~v~~~~~Da~~l~~------------ 302 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR-L---KLSSIEIKIADAERLTE------------ 302 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-c---CCCeEEEEECchhhhhh------------
Confidence 479999999999999988763 346899999999999999998532 2 22358899999876541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccchhcccCChhHH----------------
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNYSCCCLHKRADL---------------- 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~S~~yL~~r~dL---------------- 255 (382)
+....||+|++ -|.+++++....++
T Consensus 303 -------------------------------------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q 345 (431)
T PRK14903 303 -------------------------------------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQ 345 (431)
T ss_pred -------------------------------------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHH
Confidence 01346999986 56677777655443
Q ss_pred HHHHHHHHhhccCCCcEEEEecc
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
...+.++++.|+ |||++|+-.-
T Consensus 346 ~~iL~~a~~~Lk-pGG~LvYsTC 367 (431)
T PRK14903 346 LRIVSQAWKLLE-KGGILLYSTC 367 (431)
T ss_pred HHHHHHHHHhcC-CCCEEEEEEC
Confidence 556999999999 9999998654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8e-09 Score=111.73 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=80.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+|+.+++.|.. .|++||+|+.||++|++|... .+- ...++.++++|+.++.. .
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~-~V~~vD~s~~al~~a~~N~~~-ng~-~~~~v~~i~~D~~~~l~--~---------- 604 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK-STTTVDMSNTYLEWAERNFAL-NGL-SGRQHRLIQADCLAWLK--E---------- 604 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHH-hCC-CccceEEEEccHHHHHH--H----------
Confidence 46999999999999999998753 799999999999999998632 111 11379999999966431 0
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc-------cCChhHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC-------LHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y-------L~~r~dL~~yFr~V~~~L~ 267 (382)
+ ..+||+|++=-=++.- +.-..+....++.+.+.|+
T Consensus 605 ---~----------------------------------~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~ 647 (702)
T PRK11783 605 ---A----------------------------------REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR 647 (702)
T ss_pred ---c----------------------------------CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC
Confidence 0 2468988873211111 0112356678888999999
Q ss_pred CCCcEEEEeccC
Q 045407 268 KKGGIFVMDLYG 279 (382)
Q Consensus 268 ~pGGiFVfDl~g 279 (382)
|||++++....
T Consensus 648 -~gG~l~~~~~~ 658 (702)
T PRK11783 648 -PGGTLYFSNNK 658 (702)
T ss_pred -CCCEEEEEeCC
Confidence 99999997653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-08 Score=99.29 Aligned_cols=187 Identities=18% Similarity=0.218 Sum_probs=122.0
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC--CcceEEEeccCCCchhhhhcccchhhhh
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG--YSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~--~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+++||||-|-=...|-+.|-. ..||+||....++-|+++..+-..... .-.+.|+.+|-..-. |.
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~-----------l~ 187 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER-----------LM 187 (389)
T ss_pred ccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH-----------HH
Confidence 4789999999999999999985 899999999999999999765211110 012678888853322 11
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
..+. +..++||||-|-+.-+-.|.+.+.+...+++|+..|+ |||+|
T Consensus 188 d~~e---------------------------------~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~F 233 (389)
T KOG1975|consen 188 DLLE---------------------------------FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVF 233 (389)
T ss_pred Hhcc---------------------------------CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEE
Confidence 1111 1245699998877666668899999999999999999 99999
Q ss_pred EEeccCCCchhhhhHhh--hccCCeEEE-----EeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHH
Q 045407 274 VMDLYGGTSSEQKLRLQ--RRFANFTYV-----WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDC 346 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~--R~~~~~tyv-----Weq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~ 346 (382)
|.=+-...-...+++.. +++.+=.|+ -.+..+| .--.-+..+|++.+-- . .-+ -+-..|-++.+
T Consensus 234 IgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~--~p~fG~kY~F~LedaV---d-cPE---ylV~F~~l~~l 304 (389)
T KOG1975|consen 234 IGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFD--VPPFGAKYRFHLEDAV---D-CPE---YLVPFPTLVSL 304 (389)
T ss_pred EEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccC--CCCccceEEEEccccc---C-Ccc---eeeehHHHHHH
Confidence 99664333333444332 234442221 1222333 0111234445443221 1 122 45677889999
Q ss_pred HHHcCCcEEEE
Q 045407 347 LEEAGFRSVHF 357 (382)
Q Consensus 347 LeeAGF~~V~v 357 (382)
+++-|.+.|.+
T Consensus 305 ae~y~LeLv~~ 315 (389)
T KOG1975|consen 305 AEEYGLELVFV 315 (389)
T ss_pred HHhcCcEEEEe
Confidence 99999999876
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=102.70 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+.+++.+|.. ...+|||+|||||.|++.-++.|.. +|+|+|+||.+++.|++|.... + -..++.+. ...+
T Consensus 150 lcl~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N-~--~~~~~~v~--~~~~- 220 (295)
T PF06325_consen 150 LCLELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELN-G--VEDRIEVS--LSED- 220 (295)
T ss_dssp HHHHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHT-T---TTCEEES--CTSC-
T ss_pred HHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHc-C--CCeeEEEE--Eecc-
Confidence 45555555542 2348999999999999999999985 8999999999999999986331 1 01133321 1000
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
....+||+|+|-.. ..-|+...
T Consensus 221 ---------------------------------------------------~~~~~~dlvvANI~-------~~vL~~l~ 242 (295)
T PF06325_consen 221 ---------------------------------------------------LVEGKFDLVVANIL-------ADVLLELA 242 (295)
T ss_dssp ---------------------------------------------------TCCS-EEEEEEES--------HHHHHHHH
T ss_pred ---------------------------------------------------cccccCCEEEECCC-------HHHHHHHH
Confidence 11377999998542 25778888
Q ss_pred HHHHhhccCCCcEEEE
Q 045407 260 KHVLHALSKKGGIFVM 275 (382)
Q Consensus 260 r~V~~~L~~pGGiFVf 275 (382)
..+.++|+ |||.||+
T Consensus 243 ~~~~~~l~-~~G~lIl 257 (295)
T PF06325_consen 243 PDIASLLK-PGGYLIL 257 (295)
T ss_dssp HHCHHHEE-EEEEEEE
T ss_pred HHHHHhhC-CCCEEEE
Confidence 88999999 9999999
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=99.55 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=48.4
Q ss_pred CcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+|||+|||||.++..+++... ...|+|||+|++|++.|+++... . +..++.++++|..+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-~---g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-L---GIENVIFVCGDGYYG 143 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-c---CCCcEEEEeCChhhc
Confidence 4799999999999999998754 24699999999999999987422 2 234688999986543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-09 Score=99.33 Aligned_cols=146 Identities=17% Similarity=0.337 Sum_probs=94.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||||||.|.|...|.+. .+.++.||++|++.+.-|.++- ++.+|+|+-+-.
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rG-----------v~Viq~Dld~gL-------------- 68 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARG-----------VSVIQGDLDEGL-------------- 68 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcC-----------CCEEECCHHHhH--------------
Confidence 36999999999998776663 4568999999999999999883 678999974422
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
++|+...||.|+..- ++-.+..++.+ ++++.+. |.-.|
T Consensus 69 ----------------------------------~~f~d~sFD~VIlsq-tLQ~~~~P~~v---L~EmlRV----gr~~I 106 (193)
T PF07021_consen 69 ----------------------------------ADFPDQSFDYVILSQ-TLQAVRRPDEV---LEEMLRV----GRRAI 106 (193)
T ss_pred ----------------------------------hhCCCCCccEEehHh-HHHhHhHHHHH---HHHHHHh----cCeEE
Confidence 346678999998764 66666655544 4444333 32223
Q ss_pred EeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE------EecCHHHHHHHHH
Q 045407 275 MDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW------RLWSLPEIKDCLE 348 (382)
Q Consensus 275 fDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~------Rlysl~EI~d~Le 348 (382)
+ .||||.|| .. |.+|-| .|..-..+...|.| |+.|+.+++++.+
T Consensus 107 V----------------sFPNFg~W-~~----------R~~l~~---~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 107 V----------------SFPNFGHW-RN----------RLQLLL---RGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred E----------------EecChHHH-HH----------HHHHHh---cCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 2 12454432 21 111100 11101112233333 8999999999999
Q ss_pred HcCCcEEEEE
Q 045407 349 EAGFRSVHFW 358 (382)
Q Consensus 349 eAGF~~V~v~ 358 (382)
+.|+++++-+
T Consensus 157 ~~~i~I~~~~ 166 (193)
T PF07021_consen 157 ELGIRIEERV 166 (193)
T ss_pred HCCCEEEEEE
Confidence 9999998754
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=92.11 Aligned_cols=119 Identities=23% Similarity=0.290 Sum_probs=91.0
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.|-||.-+.---+. -+.-.+|+|.|||||.++++|++.++..+|+++|-++++++.-+.|. ++++ ..++.++.
T Consensus 18 TK~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~-~~fg---~~n~~vv~ 90 (187)
T COG2242 18 TKEEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNA-ARFG---VDNLEVVE 90 (187)
T ss_pred cHHHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHH-HHhC---CCcEEEEe
Confidence 45566443332222 22234799999999999999999999999999999999999998875 4444 46899999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
|+.-+... .++.||+|+.=-- .
T Consensus 91 g~Ap~~L~--------------------------------------------------~~~~~daiFIGGg--------~ 112 (187)
T COG2242 91 GDAPEALP--------------------------------------------------DLPSPDAIFIGGG--------G 112 (187)
T ss_pred ccchHhhc--------------------------------------------------CCCCCCEEEECCC--------C
Confidence 99744430 1457999987652 3
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecc
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.+...|..+...|+ |||.+|+...
T Consensus 113 ~i~~ile~~~~~l~-~ggrlV~nai 136 (187)
T COG2242 113 NIEEILEAAWERLK-PGGRLVANAI 136 (187)
T ss_pred CHHHHHHHHHHHcC-cCCeEEEEee
Confidence 56788999999999 9999999875
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=102.84 Aligned_cols=108 Identities=16% Similarity=0.053 Sum_probs=78.8
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||..|..+++.. ...+|+|+|+|+.||+.++++... + +..+|.++++|+..+.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~---g~~~v~~~~~Da~~~~------------- 314 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA-L---GITIIETIEGDARSFS------------- 314 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-h---CCCeEEEEeCcccccc-------------
Confidence 579999999999988887642 235899999999999999988532 2 2346899999987654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccchhcc---------cCChhHH-------
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNYSCCC---------LHKRADL------- 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~S~~y---------L~~r~dL------- 255 (382)
. ...||+|++ -|.+.+. ..+++++
T Consensus 315 ----~----------------------------------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q 356 (445)
T PRK14904 315 ----P----------------------------------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ 356 (445)
T ss_pred ----c----------------------------------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH
Confidence 0 245899884 2333332 2333443
Q ss_pred HHHHHHHHhhccCCCcEEEEecc
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
...++++++.|+ |||++|+-.-
T Consensus 357 ~~iL~~a~~~lk-pgG~lvystc 378 (445)
T PRK14904 357 AELLDHAASLLK-PGGVLVYATC 378 (445)
T ss_pred HHHHHHHHHhcC-CCcEEEEEeC
Confidence 358999999999 9999999654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=102.48 Aligned_cols=142 Identities=16% Similarity=0.056 Sum_probs=91.5
Q ss_pred HHHHhhcCChhhH-HHHHHHHHHh-hCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh-cccccc
Q 045407 86 LYQQSVQSPKGDI-SYLQKFFLIY-VGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN-NLNKVG 162 (382)
Q Consensus 86 LYd~~vq~p~~Di-~yl~~~f~~y-~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~-~~~kl~ 162 (382)
+.|-.+|....|- -|-+-+...- .....|.+||++|||+|..+.++++...-.+|++||||++|+++|++. ....+.
T Consensus 121 ~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~ 200 (374)
T PRK01581 121 YLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLN 200 (374)
T ss_pred EECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhc
Confidence 3444555555443 4433333210 124558899999999999999999876556899999999999999972 111111
Q ss_pred --CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 163 --ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 163 --~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
+-...|+.++.+|.++... . ....||+|+
T Consensus 201 ~~~~~DpRV~vvi~Da~~fL~----------------~---------------------------------~~~~YDVII 231 (374)
T PRK01581 201 KSAFFDNRVNVHVCDAKEFLS----------------S---------------------------------PSSLYDVII 231 (374)
T ss_pred cccCCCCceEEEECcHHHHHH----------------h---------------------------------cCCCccEEE
Confidence 1123599999999876541 0 035699998
Q ss_pred Eccch-hcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 241 AFNYS-CCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 241 afn~S-~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+=..- .......---..+|+.++++|+ |||+||+-.
T Consensus 232 vDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs 268 (374)
T PRK01581 232 IDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQS 268 (374)
T ss_pred EcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEec
Confidence 75311 1100011112568999999999 999999853
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=100.86 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=80.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|..|+.+++.....+|+|+|+|+.||+.++++.. +.+-. .++.+.++|...+..
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~-r~g~~--~~v~~~~~d~~~~~~------------- 303 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLK-RLGLT--IKAETKDGDGRGPSQ------------- 303 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH-HcCCC--eEEEEeccccccccc-------------
Confidence 57999999999999999987655789999999999999988753 22221 245557777654430
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccchhcccCChhH----------------HH
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNYSCCCLHKRAD----------------LV 256 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~S~~yL~~r~d----------------L~ 256 (382)
. ....+||.|++ -|.+.+.+....+ ..
T Consensus 304 ---~--------------------------------~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~ 348 (426)
T TIGR00563 304 ---W--------------------------------AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQS 348 (426)
T ss_pred ---c--------------------------------ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHH
Confidence 0 01356999985 3556665544333 26
Q ss_pred HHHHHHHhhccCCCcEEEEec
Q 045407 257 LYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfDl 277 (382)
..++++++.|+ |||++|.-.
T Consensus 349 ~lL~~a~~~Lk-pgG~lvyst 368 (426)
T TIGR00563 349 EILDAIWPLLK-TGGTLVYAT 368 (426)
T ss_pred HHHHHHHHhcC-CCcEEEEEe
Confidence 78999999999 999999853
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=93.57 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=114.5
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHH----HHHHHhccccccCCCCcceEEEecc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEAL----EWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL----~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
-|.+.++.++.... .+|||+|||||.|++.+|+.-|..+=.--|+++..+ +|..+..... .+-. +.-|
T Consensus 13 pIl~vL~~~l~~~~-~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N------v~~P-~~lD 84 (204)
T PF06080_consen 13 PILEVLKQYLPDSG-TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN------VRPP-LALD 84 (204)
T ss_pred HHHHHHHHHhCccC-ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc------cCCC-eEee
Confidence 34444444442211 159999999999999999999988888999999886 3333332111 1111 2446
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL 255 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL 255 (382)
|.++.|.-. . .+.+....||+|+|.|. .++...+..
T Consensus 85 v~~~~w~~~-------------~-----------------------------~~~~~~~~~D~i~~~N~--lHI~p~~~~ 120 (204)
T PF06080_consen 85 VSAPPWPWE-------------L-----------------------------PAPLSPESFDAIFCINM--LHISPWSAV 120 (204)
T ss_pred cCCCCCccc-------------c-----------------------------ccccCCCCcceeeehhH--HHhcCHHHH
Confidence 666654210 0 00112467999999994 477899999
Q ss_pred HHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEE-EeecccccccceEEEEEEEEeecccceeeeeeeee
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV-WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN 334 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyv-Weq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~ 334 (382)
...|+.+.++|+ +||+|++ ||.... .+ .+. =.+..||. .|+..- -.
T Consensus 121 ~~lf~~a~~~L~-~gG~L~~--YGPF~~----------~G-~~ts~SN~~FD~------------------sLr~rd-p~ 167 (204)
T PF06080_consen 121 EGLFAGAARLLK-PGGLLFL--YGPFNR----------DG-KFTSESNAAFDA------------------SLRSRD-PE 167 (204)
T ss_pred HHHHHHHHHhCC-CCCEEEE--eCCccc----------CC-EeCCcHHHHHHH------------------HHhcCC-CC
Confidence 999999999999 9999986 543222 11 111 12233442 111111 12
Q ss_pred EEecCHHHHHHHHHHcCCcEEEEEeccCch
Q 045407 335 WRLWSLPEIKDCLEEAGFRSVHFWLREMPD 364 (382)
Q Consensus 335 ~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~ 364 (382)
|=+-.+++|..+..++|++.+.+. +||-
T Consensus 168 ~GiRD~e~v~~lA~~~GL~l~~~~--~MPA 195 (204)
T PF06080_consen 168 WGIRDIEDVEALAAAHGLELEEDI--DMPA 195 (204)
T ss_pred cCccCHHHHHHHHHHCCCccCccc--ccCC
Confidence 567789999999999999998875 7774
|
The function of this family is unknown. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-08 Score=94.13 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc--cccC------CCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN--KVGA------DGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~--kl~~------d~~~RI~ 170 (382)
..|++++.. ..+..+.+||..|||.|.-...||++|+ +|+|||||+.+++.|.+.+.. .+.. ....+|.
T Consensus 24 p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 24 PALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp HHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred HHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 456666655 3444456899999999999999999995 799999999999999554322 1111 1234789
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
+++||+.+++.. ..++||+|.=-. ++|=|
T Consensus 101 ~~~gDfF~l~~~-------------------------------------------------~~g~fD~iyDr~-~l~Al- 129 (218)
T PF05724_consen 101 IYCGDFFELPPE-------------------------------------------------DVGKFDLIYDRT-FLCAL- 129 (218)
T ss_dssp EEES-TTTGGGS-------------------------------------------------CHHSEEEEEECS-STTTS-
T ss_pred EEEcccccCChh-------------------------------------------------hcCCceEEEEec-ccccC-
Confidence 999999876610 035799997653 44444
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.++.=.+|.+++.+.|+ |||.+++
T Consensus 130 pp~~R~~Ya~~l~~ll~-p~g~~lL 153 (218)
T PF05724_consen 130 PPEMRERYAQQLASLLK-PGGRGLL 153 (218)
T ss_dssp -GGGHHHHHHHHHHCEE-EEEEEEE
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEE
Confidence 46777899999999999 9999544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=100.64 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=50.3
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||+|..+..+++.. ...+|+|+|+|+.+++.++++. .+. +...|.++++|++++.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~-~~~---g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENA-KRL---GLTNIETKALDARKVH 314 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHc---CCCeEEEEeCCccccc
Confidence 579999999999999999863 4568999999999999999874 222 2235899999987654
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-08 Score=100.45 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=75.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+++..+..|. .+|++||+|+.||++|++|... .+- ...++.++++|+.+...
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~-Ngl-~~~~v~~i~~D~~~~l~------------- 285 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVEL-NKL-DLSKAEFVRDDVFKLLR------------- 285 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHH-cCC-CCCcEEEEEccHHHHHH-------------
Confidence 4699999999999998777664 4899999999999999998532 111 11378999999976531
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh-------hHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-------ADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-------~dL~~yFr~V~~~L~ 267 (382)
++.. ...+||+|++== =.+..+. .....+++.+.+.|+
T Consensus 286 ~~~~---------------------------------~~~~fDlVilDP--P~f~~~k~~l~~~~~~y~~l~~~a~~lLk 330 (396)
T PRK15128 286 TYRD---------------------------------RGEKFDVIVMDP--PKFVENKSQLMGACRGYKDINMLAIQLLN 330 (396)
T ss_pred HHHh---------------------------------cCCCCCEEEECC--CCCCCChHHHHHHHHHHHHHHHHHHHHcC
Confidence 0000 024689998532 1122222 234556677899999
Q ss_pred CCCcEEEEe
Q 045407 268 KKGGIFVMD 276 (382)
Q Consensus 268 ~pGGiFVfD 276 (382)
|||+||.=
T Consensus 331 -~gG~lv~~ 338 (396)
T PRK15128 331 -PGGILLTF 338 (396)
T ss_pred -CCeEEEEE
Confidence 99999973
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=96.07 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=54.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
...|||+|||+|.++..++++-....++||+++++|.+.|+++-.. ..-..||+++++|+.++.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l---n~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL---NPLEERIQVIEADIKEFL 108 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh---CcchhceeEehhhHHHhh
Confidence 5679999999999999999996668999999999999999997432 112359999999998876
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=93.11 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=50.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++... .+-.++.++++|+.++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~----~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAE----LGLTNVQFQALDSTQFA 234 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEEcCHHHHH
Confidence 4679999999999999999987 4799999999999999988532 12247999999986544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=91.29 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=77.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|+|+|+|+|.++..++++-|..+++.+|| |++++.|++ ..||.++.||+.++.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f~~~------------- 156 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFFDPL------------- 156 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TTTCC-------------
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHHhhh-------------
Confidence 45799999999999999999999999999999 999998888 149999999997332
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC--c
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG--G 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG--G 271 (382)
|.+|+|+.-+-..+ .+.++.+..|++|+++|+ || |
T Consensus 157 ----------------------------------------P~~D~~~l~~vLh~--~~d~~~~~iL~~~~~al~-pg~~g 193 (241)
T PF00891_consen 157 ----------------------------------------PVADVYLLRHVLHD--WSDEDCVKILRNAAAALK-PGKDG 193 (241)
T ss_dssp ----------------------------------------SSESEEEEESSGGG--S-HHHHHHHHHHHHHHSE-ECTTE
T ss_pred ----------------------------------------ccccceeeehhhhh--cchHHHHHHHHHHHHHhC-CCCCC
Confidence 44899988764433 467899999999999999 76 5
Q ss_pred E-EEEecc
Q 045407 272 I-FVMDLY 278 (382)
Q Consensus 272 i-FVfDl~ 278 (382)
. +|+|..
T Consensus 194 ~llI~e~~ 201 (241)
T PF00891_consen 194 RLLIIEMV 201 (241)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeec
Confidence 5 455765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-08 Score=95.71 Aligned_cols=176 Identities=16% Similarity=0.091 Sum_probs=94.8
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG 162 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~ 162 (382)
++.+|.=+ .-.++++=..+.+.. .--.|..+||+||-.|.||+.+|+....+.|+|||||+-.+.-|+++..--..
T Consensus 32 f~~YY~~r--~~~~~~D~rLk~L~~--~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~ 107 (288)
T KOG2899|consen 32 FDNYYGFR--LNPGDSDPRLKVLEK--DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCD 107 (288)
T ss_pred ccchhhcc--cCCCCCChhhhhccc--cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccccc
Confidence 34455544 334444333333322 12225678999999999999999987778999999999999999998643111
Q ss_pred CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc
Q 045407 163 ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF 242 (382)
Q Consensus 163 ~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af 242 (382)
.....+-.+.+++--+.- .-+++.-.+... ++.-..-....++.-+.+.++-. .+..+.||||+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~------~is~~~~a~~a~-----t~~~p~n~~f~~~n~vle~~dfl---~~~~~~fDiIlcL 173 (288)
T KOG2899|consen 108 HETEVSGKFPASFGVQFG------PISQRNEADRAF-----TTDFPDNVWFQKENYVLESDDFL---DMIQPEFDIILCL 173 (288)
T ss_pred ccccccCCCccccccccc------cccccccccccc-----cccCCcchhcccccEEEecchhh---hhccccccEEEEE
Confidence 000000000111000000 000000000000 00000000111111122222111 3457889999999
Q ss_pred cchhcccC--ChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 243 NYSCCCLH--KRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 243 n~S~~yL~--~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.-+.|-=. -.+-|...|+++++.|. |||+||+.=
T Consensus 174 SiTkWIHLNwgD~GL~~ff~kis~ll~-pgGiLvvEP 209 (288)
T KOG2899|consen 174 SITKWIHLNWGDDGLRRFFRKISSLLH-PGGILVVEP 209 (288)
T ss_pred EeeeeEecccccHHHHHHHHHHHHhhC-cCcEEEEcC
Confidence 86654211 35789999999999999 999999953
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=94.64 Aligned_cols=91 Identities=9% Similarity=-0.064 Sum_probs=60.2
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKV 161 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl 161 (382)
....|..-.-.++...+.+.-..+. -....+|||+|||+|..|+.+++.- ....|+++|+|+.||+.++++... .
T Consensus 44 ~~~~~~~G~~~~qd~~s~~~~~~l~---~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-~ 119 (264)
T TIGR00446 44 STPEYLSGLYYIQEASSMIPPLALE---PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-C 119 (264)
T ss_pred cChhHhCCeEEEECHHHHHHHHHhC---CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-c
Confidence 3445554333334444544433332 1223469999999999999988753 235799999999999999987532 2
Q ss_pred cCCCCcceEEEeccCCCch
Q 045407 162 GADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 162 ~~d~~~RI~l~~gDV~~~~ 180 (382)
+...|.++++|++.+.
T Consensus 120 ---g~~~v~~~~~D~~~~~ 135 (264)
T TIGR00446 120 ---GVLNVAVTNFDGRVFG 135 (264)
T ss_pred ---CCCcEEEecCCHHHhh
Confidence 2246889999976544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-08 Score=103.43 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=80.4
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc-cccccC--CCCcceEEEeccCCCchhhhhcccc
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN-LNKVGA--DGYSRISLFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~-~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~~~ 188 (382)
+.|.+||++|||+|.++.++++.....+|++||+|++|++.|+++. ...+.. -...|++++++|.++...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~------- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR------- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-------
Confidence 3478899999999999999998754358999999999999999841 111111 123589999999876441
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhc
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHAL 266 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L 266 (382)
. ...+||+|++-... ..-.....+ ...|+.++++|
T Consensus 369 ---------~---------------------------------~~~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L 405 (521)
T PRK03612 369 ---------K---------------------------------LAEKFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRL 405 (521)
T ss_pred ---------h---------------------------------CCCCCCEEEEeCCC-CCCcchhccchHHHHHHHHHhc
Confidence 0 03579999885321 110000111 45889999999
Q ss_pred cCCCcEEEEec
Q 045407 267 SKKGGIFVMDL 277 (382)
Q Consensus 267 ~~pGGiFVfDl 277 (382)
+ |||+|++-.
T Consensus 406 ~-pgG~lv~~~ 415 (521)
T PRK03612 406 A-PDGLLVVQS 415 (521)
T ss_pred C-CCeEEEEec
Confidence 9 999999954
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.1e-08 Score=94.12 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=82.2
Q ss_pred CCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+|||+|||||--|+.+|+. +....|+.+|.++++++.|+++. ++.+- ..+|.++.||.++...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl--~~~I~li~GdA~e~L~--------- 184 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGV--SHKVNVKHGLAAESLK--------- 184 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCC--CCcEEEEEcCHHHHHH---------
Confidence 34778999999999999998874 22457999999999999999975 32222 2489999999866431
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
.+.. +-..++||+|+.=-. ......||..+.+.|+ ||
T Consensus 185 ----~l~~-------------------------------~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~-~G 221 (278)
T PLN02476 185 ----SMIQ-------------------------------NGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVR-VG 221 (278)
T ss_pred ----HHHh-------------------------------cccCCCCCEEEECCC-------HHHHHHHHHHHHHhcC-CC
Confidence 0000 001357999887654 3567899999999999 99
Q ss_pred cEEEEe
Q 045407 271 GIFVMD 276 (382)
Q Consensus 271 GiFVfD 276 (382)
|++|+|
T Consensus 222 GvIV~D 227 (278)
T PLN02476 222 GVIVMD 227 (278)
T ss_pred cEEEEe
Confidence 999998
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.1e-08 Score=99.14 Aligned_cols=111 Identities=15% Similarity=0.090 Sum_probs=79.4
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||+|..|..+++. +...+|+|+|+++.||+.++++.. ++ +...|.++++|++++...
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~-r~---g~~~v~~~~~D~~~~~~~----------- 318 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ-RL---GLKSIKILAADSRNLLEL----------- 318 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH-Hc---CCCeEEEEeCChhhcccc-----------
Confidence 57999999999999999987 334589999999999999998753 22 234689999998765410
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCC---------hhH-------H
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHK---------RAD-------L 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~---------r~d-------L 255 (382)
. .+....||.|++- |.+.+-+.. +++ .
T Consensus 319 ----~-------------------------------~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q 363 (434)
T PRK14901 319 ----K-------------------------------PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQ 363 (434)
T ss_pred ----c-------------------------------ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHH
Confidence 0 0002468988852 333343332 223 3
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 045407 256 VLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfD 276 (382)
...++++++.|+ |||++|.-
T Consensus 364 ~~iL~~a~~~lk-pgG~lvys 383 (434)
T PRK14901 364 AELLESLAPLLK-PGGTLVYA 383 (434)
T ss_pred HHHHHHHHHhcC-CCCEEEEE
Confidence 677999999998 99999973
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=91.89 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=47.2
Q ss_pred CcccccCCCccHhHHHHHHhC---CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSD---SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g---~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..++++. ....|+|||||+.|+++|+++. .++.++++|+++..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~ 110 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE 110 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc
Confidence 469999999999999998862 2358999999999999999873 24789999987544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=92.36 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=49.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
..+|||+|||||.++..+++.+ .+|+|+|+|++||++|++|... .+..++.++++|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~----~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARR----NGLDNVTFYHANLEED 357 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEEeChHHh
Confidence 3579999999999999999998 4799999999999999987532 1223699999998643
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-07 Score=87.43 Aligned_cols=187 Identities=17% Similarity=0.207 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhC----CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcce-EEEe
Q 045407 99 SYLQKFFLIYVG----GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRI-SLFH 173 (382)
Q Consensus 99 ~yl~~~f~~y~g----gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI-~l~~ 173 (382)
++|...+..+.. .+.+.+||=.|||.|||+-++|++|+ .|.|.++|--||=. ..-.++.......-.| .|++
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~-s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLA-SNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHH-HHHHHcccCCCCcEEEeccee
Confidence 566666666543 34457899999999999999999996 69999999999743 2222121111111122 2333
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCc--CccCC--------CCCCccEEEEcc
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNC--SKQKS--------SLPARDIICAFN 243 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~fDiV~afn 243 (382)
. -.... ..++.++-+++.+ +...+......+. +..+| ....+|+||..+
T Consensus 115 ~-~sn~~-------~~~dqlr~v~iPD-------------v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F 173 (270)
T PF07942_consen 115 S-FSNQK-------SREDQLRPVRIPD-------------VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF 173 (270)
T ss_pred c-ccCCC-------CHHHhCCceEeCC-------------cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE
Confidence 2 11111 1122333333310 0000000111111 12222 135799988763
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecc
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKE 323 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~ 323 (382)
.+.+-..+..|++.+++.|+ |||+.|. . +...|.|+... . .++
T Consensus 174 ----FIDTA~Ni~~Yi~tI~~lLk-pgG~WIN--~---------------GPLlyh~~~~~-~--------------~~~ 216 (270)
T PF07942_consen 174 ----FIDTAENIIEYIETIEHLLK-PGGYWIN--F---------------GPLLYHFEPMS-I--------------PNE 216 (270)
T ss_pred ----EeechHHHHHHHHHHHHHhc-cCCEEEe--c---------------CCccccCCCCC-C--------------CCC
Confidence 67787889999999999999 9998875 1 23345555210 0 011
Q ss_pred cceeeeeeeeeEEecCHHHHHHHHHHcCCcEEE
Q 045407 324 QKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVH 356 (382)
Q Consensus 324 ~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~ 356 (382)
. .+ =.|.+||+.+++..||+.+.
T Consensus 217 ~-sv---------eLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 217 M-SV---------ELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred c-cc---------CCCHHHHHHHHHHCCCEEEE
Confidence 1 11 24789999999999998875
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-08 Score=89.65 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.+|..+.++ ..|.+|||+||++|--++.||+.-+ ..+|+.||+++++.++|+++. .+.+- ..+|.++.||..
T Consensus 35 ~lL~~l~~~----~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~-~~ag~--~~~I~~~~gda~ 107 (205)
T PF01596_consen 35 QLLQMLVRL----TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENF-RKAGL--DDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHH----HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHH-HHTTG--GGGEEEEES-HH
T ss_pred HHHHHHHHh----cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHH-HhcCC--CCcEEEEEeccH
Confidence 566555544 2377999999999999999997533 468999999999999999864 32221 258999999976
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+... ++.- +-..++||+|+.=.+= ..-..
T Consensus 108 ~~l~-------------~l~~-------------------------------~~~~~~fD~VFiDa~K-------~~y~~ 136 (205)
T PF01596_consen 108 EVLP-------------ELAN-------------------------------DGEEGQFDFVFIDADK-------RNYLE 136 (205)
T ss_dssp HHHH-------------HHHH-------------------------------TTTTTSEEEEEEESTG-------GGHHH
T ss_pred hhHH-------------HHHh-------------------------------ccCCCceeEEEEcccc-------cchhh
Confidence 5431 0100 0013579999876543 45578
Q ss_pred HHHHHHhhccCCCcEEEEe
Q 045407 258 YFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfD 276 (382)
||..+...|+ |||++|+|
T Consensus 137 y~~~~~~ll~-~ggvii~D 154 (205)
T PF01596_consen 137 YFEKALPLLR-PGGVIIAD 154 (205)
T ss_dssp HHHHHHHHEE-EEEEEEEE
T ss_pred HHHHHhhhcc-CCeEEEEc
Confidence 9999999999 99999998
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-07 Score=88.78 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|-..+.++... ++-....+|||+|||+|.++..+++++. +|+|||+|+.|++.++++... ..++.++++|+
T Consensus 14 d~~~~~~iv~~-~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~ 84 (258)
T PRK14896 14 DDRVVDRIVEY-AEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDA 84 (258)
T ss_pred CHHHHHHHHHh-cCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc------CCCEEEEEecc
Confidence 34445555543 3323345799999999999999999964 799999999999999987421 24799999999
Q ss_pred CCch
Q 045407 177 LQPL 180 (382)
Q Consensus 177 ~~~~ 180 (382)
++++
T Consensus 85 ~~~~ 88 (258)
T PRK14896 85 LKVD 88 (258)
T ss_pred ccCC
Confidence 8765
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=89.88 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
...+|||+|||||.++..+++++. +|+|+|+|++|++.++++.. . .++.++++|+.+.+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~----~---~~v~~i~~D~~~~~ 100 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA----E---DNLTIIEGDALKVD 100 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc----c---CceEEEEChhhcCC
Confidence 345799999999999999999986 69999999999999998641 1 47999999998776
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=91.56 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=77.9
Q ss_pred CCcccccCCCcc----HhHHHHHHhC----CCCeEEEEeCCHHHHHHHHHhcccc-----cc------------------
Q 045407 114 PLHLQEDFCGTA----LLSTEWLRSD----SRRTAVGLDLDLEALEWCMENNLNK-----VG------------------ 162 (382)
Q Consensus 114 p~~LLEl~CGTG----~LS~elar~g----~~~tVvGVDLS~emL~~A~e~~~~k-----l~------------------ 162 (382)
+.+|+-.||+|| .|++.|+..+ .+.+|+|.|||+.+|+.|++-.-.. +.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 578999999999 4777776642 1357999999999999998763220 00
Q ss_pred ----CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccE
Q 045407 163 ----ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDI 238 (382)
Q Consensus 163 ----~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDi 238 (382)
..-..+|.|-+.|+.++++ ...+.||+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~-------------------------------------------------~~~~~fD~ 226 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQW-------------------------------------------------AVPGPFDA 226 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCC-------------------------------------------------ccCCCcce
Confidence 0001223444444333221 01467999
Q ss_pred EEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 239 ICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 239 V~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
|+|-| ++.||.. +.-.+.++.++++|+ |||+|++-.
T Consensus 227 I~cRN-vliyF~~-~~~~~vl~~l~~~L~-pgG~L~lG~ 262 (287)
T PRK10611 227 IFCRN-VMIYFDK-TTQERILRRFVPLLK-PDGLLFAGH 262 (287)
T ss_pred eeHhh-HHhcCCH-HHHHHHHHHHHHHhC-CCcEEEEeC
Confidence 99998 7889855 678999999999999 999998854
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.1e-07 Score=78.83 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCcccccCCCccH-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTAL-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+++|+|||+|. ++..|++.|. +|+|+|+++.++++|+++. +..+++|+.+|+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p~~----------- 72 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNPNL----------- 72 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhC-----------CeEEECcCCCCCH-----------
Confidence 4679999999995 9999999995 7999999999999998873 5689999998871
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
.+ ...+|+|-+.. -+.+|+..+..+++.+.
T Consensus 73 ----~~----------------------------------y~~a~liysir-------pp~el~~~~~~la~~~~ 102 (134)
T PRK04148 73 ----EI----------------------------------YKNAKLIYSIR-------PPRDLQPFILELAKKIN 102 (134)
T ss_pred ----HH----------------------------------HhcCCEEEEeC-------CCHHHHHHHHHHHHHcC
Confidence 12 46689886543 35799999999998875
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=86.51 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=89.8
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|||+|||.|-|++.+++..|...++=+|+|.-+|+.|++|... .+.....+++.|+-++-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~~~~~~v~~s~~~~~v--------------- 221 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NGVENTEVWASNLYEPV--------------- 221 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cCCCccEEEEecccccc---------------
Confidence 69999999999999999999999999999999999999998532 11122267888875544
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC-Ch----hHHHHHHHHHHhhccCCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH-KR----ADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~-~r----~dL~~yFr~V~~~L~~pG 270 (382)
.++||+|+|-= =|| -. .--.+.|+.+.++|+ +|
T Consensus 222 -------------------------------------~~kfd~IisNP----Pfh~G~~v~~~~~~~~i~~A~~~L~-~g 259 (300)
T COG2813 222 -------------------------------------EGKFDLIISNP----PFHAGKAVVHSLAQEIIAAAARHLK-PG 259 (300)
T ss_pred -------------------------------------cccccEEEeCC----CccCCcchhHHHHHHHHHHHHHhhc-cC
Confidence 24688887632 111 11 222478999999999 99
Q ss_pred cEEEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 271 GIFVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 271 GiFVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
|-+.+=.++.-+++.+| .+.|.++..+
T Consensus 260 GeL~iVan~~l~y~~~L--~~~Fg~v~~l 286 (300)
T COG2813 260 GELWIVANRHLPYEKKL--KELFGNVEVL 286 (300)
T ss_pred CEEEEEEcCCCChHHHH--HHhcCCEEEE
Confidence 99998888777777655 4556555544
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=94.06 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=83.9
Q ss_pred chHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC----CCCeEEEEeCCHHHHHHHHHh-
Q 045407 82 SKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD----SRRTAVGLDLDLEALEWCMEN- 156 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g----~~~tVvGVDLS~emL~~A~e~- 156 (382)
-|+..|++++ ...|.+.....-.......|+++|||||.|+..-++.+ ...+|++|.-++.+....++.
T Consensus 161 vKY~~Ye~AI------~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v 234 (448)
T PF05185_consen 161 VKYDQYERAI------EEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRV 234 (448)
T ss_dssp HHHHHHHHHH------HHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHH
Confidence 4777777773 12333332220000024679999999999998877765 345899999999877655443
Q ss_pred ccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCc
Q 045407 157 NLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPAR 236 (382)
Q Consensus 157 ~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 236 (382)
+.... ..+|.++++||++.. + ..++
T Consensus 235 ~~n~w----~~~V~vi~~d~r~v~-----------------l----------------------------------pekv 259 (448)
T PF05185_consen 235 NANGW----GDKVTVIHGDMREVE-----------------L----------------------------------PEKV 259 (448)
T ss_dssp HHTTT----TTTEEEEES-TTTSC-----------------H----------------------------------SS-E
T ss_pred HhcCC----CCeEEEEeCcccCCC-----------------C----------------------------------CCce
Confidence 21111 258999999999987 3 4579
Q ss_pred cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 237 DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
||||+=.- ++|...+-....+..+-+.|+ |||++|=.
T Consensus 260 DIIVSElL--Gsfg~nEl~pE~Lda~~rfLk-p~Gi~IP~ 296 (448)
T PF05185_consen 260 DIIVSELL--GSFGDNELSPECLDAADRFLK-PDGIMIPS 296 (448)
T ss_dssp EEEEE-----BTTBTTTSHHHHHHHGGGGEE-EEEEEESS
T ss_pred eEEEEecc--CCccccccCHHHHHHHHhhcC-CCCEEeCc
Confidence 99999643 344444566677888888998 99998754
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-07 Score=89.80 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
-|...+.++... ........|+|+|||+|.++..+++.+. +|+|+|+|+.|+++++++... .+ ...++.++++|
T Consensus 20 ~d~~i~~~Iv~~-~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~-~~--~~~~v~ii~~D 93 (294)
T PTZ00338 20 KNPLVLDKIVEK-AAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQN-SP--LASKLEVIEGD 93 (294)
T ss_pred CCHHHHHHHHHh-cCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHh-cC--CCCcEEEEECC
Confidence 344455555543 2333345799999999999999999874 699999999999999987522 11 13579999999
Q ss_pred CCCch
Q 045407 176 VLQPL 180 (382)
Q Consensus 176 V~~~~ 180 (382)
+++.+
T Consensus 94 al~~~ 98 (294)
T PTZ00338 94 ALKTE 98 (294)
T ss_pred Hhhhc
Confidence 97655
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-07 Score=90.37 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=80.4
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..|.+||.+|+|+|.++.++++.....+|+.||||++++++|++.....-+.-...|+.++.+|.++...
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---------- 171 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---------- 171 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh----------
Confidence 3578999999999999999998655568999999999999999874321011123589999999876541
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch-h-----cccCChhHHHHHHH-HHHh
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS-C-----CCLHKRADLVLYFK-HVLH 264 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S-~-----~yL~~r~dL~~yFr-~V~~ 264 (382)
. ...+||+|++=.+- . .-|-+ ..+|+ .+.+
T Consensus 172 ------~---------------------------------~~~~yDvIi~D~~dp~~~~~~~~Lyt----~eF~~~~~~~ 208 (336)
T PLN02823 172 ------K---------------------------------RDEKFDVIIGDLADPVEGGPCYQLYT----KSFYERIVKP 208 (336)
T ss_pred ------h---------------------------------CCCCccEEEecCCCccccCcchhhcc----HHHHHHHHHH
Confidence 0 13579999875311 1 11222 35677 8899
Q ss_pred hccCCCcEEEEec
Q 045407 265 ALSKKGGIFVMDL 277 (382)
Q Consensus 265 ~L~~pGGiFVfDl 277 (382)
+|+ |||+||+-.
T Consensus 209 ~L~-p~Gvlv~q~ 220 (336)
T PLN02823 209 KLN-PGGIFVTQA 220 (336)
T ss_pred hcC-CCcEEEEec
Confidence 999 999999854
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=65.61 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=70.7
Q ss_pred ccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcc-eEEEeccCCC--chhhhhcccchhhh
Q 045407 117 LQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSR-ISLFHGNVLQ--PLEAKLVRYEPQKL 192 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R-I~l~~gDV~~--~~~~~~~~~~~~~~ 192 (382)
++|+|||+|..+ .+++.... ..++|+|+++.|+..+...... .... +.++.+|... .+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------------ 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-----AGLGLVDFVVADALGGVLP------------ 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-----cCCCceEEEEeccccCCCC------------
Confidence 899999999965 33333332 3799999999999985555321 1111 6777777654 22
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCC-CCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSL-PARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+ .. ..+|++ +....+.+.. ....++.+.+.|+ |+|
T Consensus 114 -----~---------------------------------~~~~~~d~~-~~~~~~~~~~----~~~~~~~~~~~l~-~~g 149 (257)
T COG0500 114 -----F---------------------------------EDSASFDLV-ISLLVLHLLP----PAKALRELLRVLK-PGG 149 (257)
T ss_pred -----C---------------------------------CCCCceeEE-eeeeehhcCC----HHHHHHHHHHhcC-CCc
Confidence 1 12 369999 6666666544 7889999999999 899
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
.|++....
T Consensus 150 ~~~~~~~~ 157 (257)
T COG0500 150 RLVLSDLL 157 (257)
T ss_pred EEEEEecc
Confidence 99997664
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=91.42 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=49.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..++..+ .+|+|||+|+.+++.|++|... . +-.++.++++|+.++.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~-~---~~~~~~~~~~d~~~~~ 294 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQM-L---GLDNLSFAALDSAKFA 294 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHH-c---CCCcEEEEECCHHHHH
Confidence 479999999999999999887 4799999999999999988532 1 2237899999986543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.8e-07 Score=86.12 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
+....+|..+.+. ..|.++||+|+++|--++.+|+. .+..+|+.+|.+++..+.|+++. .+.+- ..+|.+++
T Consensus 65 ~~~g~lL~~l~~~----~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~--~~~I~~~~ 137 (247)
T PLN02589 65 ADEGQFLNMLLKL----INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGV--AHKIDFRE 137 (247)
T ss_pred HHHHHHHHHHHHH----hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCC--CCceEEEe
Confidence 3444566555544 23678999999999988888865 34568999999999999999874 32221 35899999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
||.++... .+.- .+ ...++||+|+.=.+ ..
T Consensus 138 G~a~e~L~-------------~l~~-----------------~~-------------~~~~~fD~iFiDad-------K~ 167 (247)
T PLN02589 138 GPALPVLD-------------QMIE-----------------DG-------------KYHGTFDFIFVDAD-------KD 167 (247)
T ss_pred ccHHHHHH-------------HHHh-----------------cc-------------ccCCcccEEEecCC-------HH
Confidence 99765431 0000 00 00257999987754 34
Q ss_pred HHHHHHHHHHhhccCCCcEEEEe
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
.-..||..+...|+ |||++|+|
T Consensus 168 ~Y~~y~~~~l~ll~-~GGviv~D 189 (247)
T PLN02589 168 NYINYHKRLIDLVK-VGGVIGYD 189 (247)
T ss_pred HhHHHHHHHHHhcC-CCeEEEEc
Confidence 55899999999999 99999997
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=80.79 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=49.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.++||+|||||.++.+++.+|.. .|++||+|+.+++.+++|. +.++- ..++.++++|+.+.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~-~~~~~--~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENL-ALLKS--GEQAEVVRNSALRA 111 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHH-HHhCC--cccEEEEehhHHHH
Confidence 36999999999999999999974 8999999999999999874 32221 13689999998543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=84.08 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=113.5
Q ss_pred CCCcccccCCCccHhHHHHHHhCCC--CeEEEEeCCHHHHHHHHHhccccccCCCCcce-EEEeccCCCchhhhhcccch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSR--RTAVGLDLDLEALEWCMENNLNKVGADGYSRI-SLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~--~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI-~l~~gDV~~~~~~~~~~~~~ 189 (382)
.|.+|+|++||+|+--...+...+. -.|.-.|+|+..++.+++-..+ .+-..| .|.++|..+...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~----~gL~~i~~f~~~dAfd~~~-------- 202 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE----RGLEDIARFEQGDAFDRDS-------- 202 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH----cCCccceEEEecCCCCHhH--------
Confidence 4889999999999999998888876 6899999999999988887533 233344 999999876541
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
+. . -.+++++++..- .+-+|.+.+-+...++.++++|. |
T Consensus 203 --------l~------------------------------~-l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~-p 241 (311)
T PF12147_consen 203 --------LA------------------------------A-LDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALE-P 241 (311)
T ss_pred --------hh------------------------------c-cCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhC-C
Confidence 10 0 035567766654 67788888888889999999999 9
Q ss_pred CcEEEEeccCCCchhhhhHh-hhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHH
Q 045407 270 GGIFVMDLYGGTSSEQKLRL-QRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLE 348 (382)
Q Consensus 270 GGiFVfDl~gg~s~e~kl~~-~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Le 348 (382)
||.+|. .|.+..-.+.+ .| +-.+ .++++ ...+|-=|-.|+.++.+
T Consensus 242 gG~lIy---TgQPwHPQle~IAr-------~Lts-----------------Hr~g~-------~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 242 GGYLIY---TGQPWHPQLEMIAR-------VLTS-----------------HRDGK-------AWVMRRRSQAEMDQLVE 287 (311)
T ss_pred CcEEEE---cCCCCCcchHHHHH-------HHhc-----------------ccCCC-------ceEEEecCHHHHHHHHH
Confidence 999986 33332211111 01 0000 01222 12357789999999999
Q ss_pred HcCCcEEEEEec
Q 045407 349 EAGFRSVHFWLR 360 (382)
Q Consensus 349 eAGF~~V~v~~r 360 (382)
+|||..+..+++
T Consensus 288 ~aGF~K~~q~ID 299 (311)
T PF12147_consen 288 AAGFEKIDQRID 299 (311)
T ss_pred HcCCchhhheec
Confidence 999999888873
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=81.91 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=44.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE-EEeccCCCchh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS-LFHGNVLQPLE 181 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~-l~~gDV~~~~~ 181 (382)
..+||+|||||.+|..+++.|. ..|+|||+++.||.+....+ .++. +-..|++...|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~~---------~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQD---------ERVKVLERTNIRYVTP 134 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhcC---------CCeeEeecCCcccCCH
Confidence 4799999999999999999986 48999999999999844443 2443 34447775553
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=81.86 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.++... ++......|||+|||||.++..+++++. .|+|+|+|+.|++.++++.. . ..++.++++|+.+
T Consensus 16 ~i~~~i~~~-~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~----~--~~~v~v~~~D~~~ 86 (253)
T TIGR00755 16 SVIQKIVEA-ANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS----L--YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHh-cCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC----c--CCcEEEEECchhc
Confidence 334444443 3333356899999999999999999996 59999999999999998742 1 2479999999987
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
++
T Consensus 87 ~~ 88 (253)
T TIGR00755 87 VD 88 (253)
T ss_pred CC
Confidence 76
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.6e-07 Score=81.89 Aligned_cols=88 Identities=25% Similarity=0.300 Sum_probs=66.4
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC
Q 045407 86 LYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG 165 (382)
Q Consensus 86 LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~ 165 (382)
+.+|-+..|.--++.+.-+-..|. --....|+|||||+|-|++..+--+.+ .|+|+||||++|++|..|+.+ -
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~Tyg-diEgkkl~DLgcgcGmLs~a~sm~~~e-~vlGfDIdpeALEIf~rNaeE-----f 94 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYG-DIEGKKLKDLGCGCGMLSIAFSMPKNE-SVLGFDIDPEALEIFTRNAEE-----F 94 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhc-cccCcchhhhcCchhhhHHHhhcCCCc-eEEeeecCHHHHHHHhhchHH-----h
Confidence 445556666666666655555542 222346999999999999888877775 899999999999999998643 2
Q ss_pred CcceEEEeccCCCch
Q 045407 166 YSRISLFHGNVLQPL 180 (382)
Q Consensus 166 ~~RI~l~~gDV~~~~ 180 (382)
..++.|+|+|++++.
T Consensus 95 EvqidlLqcdildle 109 (185)
T KOG3420|consen 95 EVQIDLLQCDILDLE 109 (185)
T ss_pred hhhhheeeeeccchh
Confidence 357889999998876
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=79.73 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=47.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.++||+|||||.++++++.++. .+|+|||++++++++|++|. +.++ ..++.++++|+.+
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl-~~~~---~~~v~~~~~D~~~ 113 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNL-ATLK---AGNARVVNTNALS 113 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHH-HHhC---CCcEEEEEchHHH
Confidence 4699999999999998777775 58999999999999999874 3222 2368999999854
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=87.02 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=46.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec-cCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG-NVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV~~~~ 180 (382)
.|||.|||||.+.++..-.|. .|+|.|+|..|++-|+.|. +..+ -....++.+ ||+.++
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl-~~y~---i~~~~~~~~~Da~~lp 259 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINL-EYYG---IEDYPVLKVLDATNLP 259 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhh-hhhC---cCceeEEEecccccCC
Confidence 699999999999999999995 6999999999999999874 3211 123444555 888877
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=80.95 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec-cC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG-NV 176 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV 176 (382)
.||...... ..|.++||+|.++|-=++.+|..-+ .+++|.+|+++++.+.|+++- .+.+.+ .+|.++.+ |-
T Consensus 49 ~~L~~L~~~----~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~-~~ag~~--~~i~~~~~gda 121 (219)
T COG4122 49 ALLRLLARL----SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL-AEAGVD--DRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHh----cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH-HHcCCc--ceEEEEecCcH
Confidence 444444443 3477899999999999988888777 778999999999999999974 433333 35888884 65
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
++... + +..++||+|+.=.+=-.| .
T Consensus 122 l~~l~-------------~-----------------------------------~~~~~fDliFIDadK~~y-------p 146 (219)
T COG4122 122 LDVLS-------------R-----------------------------------LLDGSFDLVFIDADKADY-------P 146 (219)
T ss_pred HHHHH-------------h-----------------------------------ccCCCccEEEEeCChhhC-------H
Confidence 44331 0 125789999887655444 8
Q ss_pred HHHHHHHhhccCCCcEEEEe--ccCC
Q 045407 257 LYFKHVLHALSKKGGIFVMD--LYGG 280 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfD--l~gg 280 (382)
.||..+.+.|+ |||+.|+| +++|
T Consensus 147 ~~le~~~~lLr-~GGliv~DNvl~~G 171 (219)
T COG4122 147 EYLERALPLLR-PGGLIVADNVLFGG 171 (219)
T ss_pred HHHHHHHHHhC-CCcEEEEeecccCC
Confidence 89999999999 99999998 3455
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=85.99 Aligned_cols=58 Identities=16% Similarity=0.370 Sum_probs=49.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+|||+|||+|.++..+++.+. .|+|||+|++|+++|++|... .+..++.++++|+.+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~----~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAEL----NGIANVEFLAGTLET 351 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHH----hCCCceEEEeCCHHH
Confidence 5799999999999999998874 799999999999999998532 123479999999855
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-07 Score=82.51 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=69.2
Q ss_pred CCCcccccCCCcc----HhHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHhcccc-----ccCC------------C-
Q 045407 113 QPLHLQEDFCGTA----LLSTEWLR-----SDSRRTAVGLDLDLEALEWCMENNLNK-----VGAD------------G- 165 (382)
Q Consensus 113 ~p~~LLEl~CGTG----~LS~elar-----~g~~~tVvGVDLS~emL~~A~e~~~~k-----l~~d------------~- 165 (382)
.|.+|+-.||+|| .|++.|.. .+.+.+++|.|||+.+|+.|++-.-.. +... .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5789999999999 47777766 232468999999999999998753220 0000 0
Q ss_pred ------CcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 166 ------YSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 166 ------~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
..+|.|.+.|+.++ ....+.||+|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~--------------------------------------------------~~~~~~fD~I 140 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP--------------------------------------------------DPPFGRFDLI 140 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------------------------------------------------------EEEE
T ss_pred eEChHHcCceEEEecccCCC--------------------------------------------------CcccCCccEE
Confidence 01233333333220 0125679999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+|=| .+-||.. +.-...++..+++|+ |||++++-.
T Consensus 141 ~CRN-VlIYF~~-~~~~~vl~~l~~~L~-pgG~L~lG~ 175 (196)
T PF01739_consen 141 FCRN-VLIYFDP-ETQQRVLRRLHRSLK-PGGYLFLGH 175 (196)
T ss_dssp EE-S-SGGGS-H-HHHHHHHHHHGGGEE-EEEEEEE-T
T ss_pred EecC-EEEEeCH-HHHHHHHHHHHHHcC-CCCEEEEec
Confidence 9999 7889865 566999999999999 999999943
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=82.81 Aligned_cols=126 Identities=20% Similarity=0.203 Sum_probs=92.5
Q ss_pred chHHHHHHhhcC-ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 82 SKFLLYQQSVQS-PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 82 ~~~~LYd~~vq~-p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
++...+.+..|= -+-|+.||.... |-....+|+|-|-|+|.||+.||+ -|+.++|+.+|+.++.++.|++|...
T Consensus 66 d~~~~~~R~tQiIyPKD~~~I~~~~----gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 66 DYLLSMKRRTQIIYPKDAGYIVARL----GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred HHHHhCcCCCceecCCCHHHHHHHc----CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence 444444444332 134778876643 323234699999999999999996 77778999999999999999998533
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.+ -..+|.+..+|+++... ...||+|
T Consensus 142 -~~--l~d~v~~~~~Dv~~~~~---------------------------------------------------~~~vDav 167 (256)
T COG2519 142 -FG--LGDRVTLKLGDVREGID---------------------------------------------------EEDVDAV 167 (256)
T ss_pred -hc--cccceEEEecccccccc---------------------------------------------------ccccCEE
Confidence 21 12358999999987661 2368988
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+- +-.+--.++.++.++|+ |||.+++
T Consensus 168 ~L---------Dmp~PW~~le~~~~~Lk-pgg~~~~ 193 (256)
T COG2519 168 FL---------DLPDPWNVLEHVSDALK-PGGVVVV 193 (256)
T ss_pred EE---------cCCChHHHHHHHHHHhC-CCcEEEE
Confidence 64 33566789999999999 9999988
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=80.90 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=46.5
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+|||+|||||-+|+-+++. |+...|++||++++++++|+++. .. .+..+|.++++|-..
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l-~~---~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNL-AR---LGIDNVEVVVGDGSE 134 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHH-HH---HTTHSEEEEES-GGG
T ss_pred CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHH-HH---hccCceeEEEcchhh
Confidence 36999999999999999987 44457999999999999999874 32 234579999999643
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=78.30 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=75.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
.++|+|||.|.+.+.+|+.-|...++|||++...+..|.++... .+..++.++++|...... .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~----~~l~Nv~~~~~da~~~l~-~------------ 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK----RGLKNVRFLRGDARELLR-R------------ 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH----HTTSSEEEEES-CTTHHH-H------------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh----hcccceEEEEccHHHHHh-h------------
Confidence 56799999999999999999999999999999999999888643 244689999999887541 0
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh-----HHHHHHHHHHhhccCCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA-----DLVLYFKHVLHALSKKG 270 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~-----dL~~yFr~V~~~L~~pG 270 (382)
+ +....+|.|..+ +.-=|..++. --...+..+++.|+ ||
T Consensus 83 --~--------------------------------~~~~~v~~i~i~-FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~g 126 (195)
T PF02390_consen 83 --L--------------------------------FPPGSVDRIYIN-FPDPWPKKRHHKRRLVNPEFLELLARVLK-PG 126 (195)
T ss_dssp --H--------------------------------STTTSEEEEEEE-S-----SGGGGGGSTTSHHHHHHHHHHEE-EE
T ss_pred --c--------------------------------ccCCchheEEEe-CCCCCcccchhhhhcCCchHHHHHHHHcC-CC
Confidence 1 113456665544 3444555444 23467788899999 99
Q ss_pred cEEEE
Q 045407 271 GIFVM 275 (382)
Q Consensus 271 GiFVf 275 (382)
|.+.|
T Consensus 127 G~l~~ 131 (195)
T PF02390_consen 127 GELYF 131 (195)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99988
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-06 Score=82.55 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
+.+|||+|||+|.+|.-++..-++.+|++||.|+.++..|.+|... +.. ..++..++-+|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr-~~l--~g~i~v~~~~m 208 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR-LKL--SGRIEVIHNIM 208 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH-Hhh--cCceEEEeccc
Confidence 4579999999999999999999999999999999999999998755 222 24777776555
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.8e-06 Score=82.75 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=79.6
Q ss_pred HHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchh
Q 045407 102 QKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLE 181 (382)
Q Consensus 102 ~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~ 181 (382)
.++...+..|. +||++||=||..|+.-++.|. ..|+.||+|..+|+||++|..-. .-...++.++++|+.+...
T Consensus 115 R~~v~~~~~gk---rvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN--g~~~~~~~~~~~Dvf~~l~ 188 (286)
T PF10672_consen 115 RKWVRKYAKGK---RVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN--GLDLDRHRFIQGDVFKFLK 188 (286)
T ss_dssp HHHHHHHCTTC---EEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT--T-CCTCEEEEES-HHHHHH
T ss_pred HHHHHHHcCCC---ceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEEecCHHHHHH
Confidence 34444444443 699999999999999888886 48999999999999999985321 1112479999999865431
Q ss_pred hhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc--ccCChhHHHHHH
Q 045407 182 AKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC--CLHKRADLVLYF 259 (382)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~--yL~~r~dL~~yF 259 (382)
++.- ..+||+|++===+|- =+.-..+....+
T Consensus 189 -------------~~~~----------------------------------~~~fD~IIlDPPsF~k~~~~~~~~y~~L~ 221 (286)
T PF10672_consen 189 -------------RLKK----------------------------------GGRFDLIILDPPSFAKSKFDLERDYKKLL 221 (286)
T ss_dssp -------------HHHH----------------------------------TT-EEEEEE--SSEESSTCEHHHHHHHHH
T ss_pred -------------HHhc----------------------------------CCCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 0000 246777775211111 011124666778
Q ss_pred HHHHhhccCCCcEEEEeccCCC
Q 045407 260 KHVLHALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl~gg~ 281 (382)
+.+.+.|+ |||++++=...+.
T Consensus 222 ~~a~~ll~-~gG~l~~~scs~~ 242 (286)
T PF10672_consen 222 RRAMKLLK-PGGLLLTCSCSHH 242 (286)
T ss_dssp HHHHHTEE-EEEEEEEEE--TT
T ss_pred HHHHHhcC-CCCEEEEEcCCcc
Confidence 88999999 9999988655433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-06 Score=84.66 Aligned_cols=113 Identities=21% Similarity=0.150 Sum_probs=80.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+||++||=||..|+.-|..|.. .||+||+|..+|+||++|..- -.-...++.|+++|+-+......
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~-~vt~VD~S~~al~~a~~N~~L--Ng~~~~~~~~i~~Dvf~~l~~~~----------- 285 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGAS-EVTSVDLSKRALEWARENAEL--NGLDGDRHRFIVGDVFKWLRKAE----------- 285 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCC-ceEEEeccHHHHHHHHHHHHh--cCCCccceeeehhhHHHHHHHHH-----------
Confidence 6999999999999999999963 899999999999999998532 12223579999999976652100
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc-----cCChhHHHHHHHHHHhhccCCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC-----LHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y-----L~~r~dL~~yFr~V~~~L~~pG 270 (382)
- ...+||+|+.===||.= +.=..+.......+.+.|+ ||
T Consensus 286 --~---------------------------------~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pg 329 (393)
T COG1092 286 --R---------------------------------RGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PG 329 (393)
T ss_pred --h---------------------------------cCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CC
Confidence 0 02368888753222220 0112456677778899999 99
Q ss_pred cEEEEecc
Q 045407 271 GIFVMDLY 278 (382)
Q Consensus 271 GiFVfDl~ 278 (382)
|++|+=-.
T Consensus 330 G~l~~~s~ 337 (393)
T COG1092 330 GTLVTSSC 337 (393)
T ss_pred CEEEEEec
Confidence 99999543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=71.96 Aligned_cols=110 Identities=16% Similarity=-0.002 Sum_probs=61.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||||||||..++.+++.....+|+.-|+++ .|..++.|... -+.....+|.+..- .|...
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~-N~~~~~~~v~v~~L-----~Wg~~--------- 109 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL-NGSLLDGRVSVRPL-----DWGDE--------- 109 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT-T--------EEEE-------TTS----------
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh-ccccccccccCcEE-----EecCc---------
Confidence 4689999999999999999993335899999999 99888876422 11011234444332 33110
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.... .+...+||+|++.= .+ | ..+.+...++.+.+.|+ ++|.+
T Consensus 110 ----------------~~~~----------------~~~~~~~D~IlasD-v~-Y--~~~~~~~L~~tl~~ll~-~~~~v 152 (173)
T PF10294_consen 110 ----------------LDSD----------------LLEPHSFDVILASD-VL-Y--DEELFEPLVRTLKRLLK-PNGKV 152 (173)
T ss_dssp ----------------HHHH----------------HHS-SSBSEEEEES----S---GGGHHHHHHHHHHHBT-T-TTE
T ss_pred ----------------cccc----------------ccccccCCEEEEec-cc-c--hHHHHHHHHHHHHHHhC-CCCEE
Confidence 0000 01135799999874 32 2 34666777777788888 77776
Q ss_pred EEe
Q 045407 274 VMD 276 (382)
Q Consensus 274 VfD 276 (382)
++=
T Consensus 153 l~~ 155 (173)
T PF10294_consen 153 LLA 155 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.8e-06 Score=74.58 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=48.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRT---------AVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~t---------VvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|+|.|||||.+.+|-+..+.... ++|+|+|+.|++.|++|... .+- ...|.+.+.|+++++
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-ag~--~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-AGV--EDYIDFIQWDARELP 101 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-TT---CGGEEEEE--GGGGG
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-ccc--CCceEEEecchhhcc
Confidence 5799999999999999988888766 78999999999999998532 221 236899999987766
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.7e-06 Score=81.07 Aligned_cols=119 Identities=17% Similarity=0.068 Sum_probs=78.6
Q ss_pred HHHHHHHHHhh-CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYV-GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~-ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.||.++..+.. +.....+.||.|+|-||+|..++-.-.. +|--||-.+..|+.|++... .....-..+++.-+.
T Consensus 40 ~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~----~~~~~v~~~~~~gLQ 114 (218)
T PF05891_consen 40 NFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLG----KDNPRVGEFYCVGLQ 114 (218)
T ss_dssp HHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTC----CGGCCEEEEEES-GG
T ss_pred HHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhc----ccCCCcceEEecCHh
Confidence 45555444321 1122467899999999999888766554 89999999999999997642 212224667777665
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
++. . ....||+|-+- -.++||++ +||+.
T Consensus 115 ~f~-----------------P---------------------------------~~~~YDlIW~Q-W~lghLTD-~dlv~ 142 (218)
T PF05891_consen 115 DFT-----------------P---------------------------------EEGKYDLIWIQ-WCLGHLTD-EDLVA 142 (218)
T ss_dssp G------------------------------------------------------TT-EEEEEEE-S-GGGS-H-HHHHH
T ss_pred hcc-----------------C---------------------------------CCCcEeEEEeh-HhhccCCH-HHHHH
Confidence 443 1 03579999886 47899887 79999
Q ss_pred HHHHHHhhccCCCcEEEE
Q 045407 258 YFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVf 275 (382)
+|+++..+|+ |||+.|+
T Consensus 143 fL~RCk~~L~-~~G~Ivv 159 (218)
T PF05891_consen 143 FLKRCKQALK-PNGVIVV 159 (218)
T ss_dssp HHHHHHHHEE-EEEEEEE
T ss_pred HHHHHHHhCc-CCcEEEE
Confidence 9999999999 9999988
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-06 Score=78.03 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=74.5
Q ss_pred chHHHHHHhhcCChhh-HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 82 SKFLLYQQSVQSPKGD-ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~D-i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
.||.-|++-|++++-. ++-+.+.++.. .....|-|+|||.|.|+..+. .+ ++|.-.||-. .|
T Consensus 43 ~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~-~~--~~V~SfDLva--------~n--- 105 (219)
T PF05148_consen 43 IYHEGFRQQVKKWPVNPVDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVP-NK--HKVHSFDLVA--------PN--- 105 (219)
T ss_dssp HHHHHHHHHHCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S-----EEEEESS---------SS---
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHhc---CCCEEEEECCCchHHHHHhcc-cC--ceEEEeeccC--------CC---
Confidence 4999999999887644 46665555532 223579999999999996654 33 4799999865 11
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
.+ ++..||...+ | ....+|+||
T Consensus 106 ------~~--Vtacdia~vP-----------------L---------------------------------~~~svDv~V 127 (219)
T PF05148_consen 106 ------PR--VTACDIANVP-----------------L---------------------------------EDESVDVAV 127 (219)
T ss_dssp ------TT--EEES-TTS-S----------------------------------------------------TT-EEEEE
T ss_pred ------CC--EEEecCccCc-----------------C---------------------------------CCCceeEEE
Confidence 12 5788998877 3 246689998
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
....-++ .++..+++.|.+.|+ +||++.+ .+-
T Consensus 128 fcLSLMG-----Tn~~~fi~EA~RvLK-~~G~L~IAEV~ 160 (219)
T PF05148_consen 128 FCLSLMG-----TNWPDFIREANRVLK-PGGILKIAEVK 160 (219)
T ss_dssp EES---S-----S-HHHHHHHHHHHEE-EEEEEEEEEEG
T ss_pred EEhhhhC-----CCcHHHHHHHHheec-cCcEEEEEEec
Confidence 8775555 689999999999999 9999988 654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=73.79 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=78.2
Q ss_pred cCChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc------cccC
Q 045407 92 QSPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN------KVGA 163 (382)
Q Consensus 92 q~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~------kl~~ 163 (382)
...-||+ ..+.+++.+ ++-..-..++|||||.|+.....|-.-.-..++||.+.+..-+.|...... ..+.
T Consensus 20 ~~~YGEi~~~~~~~il~~-~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 20 SETYGEISPEFVSKILDE-LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CCCGGGCHHHHHHHHHHH-TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred CcceeecCHHHHHHHHHH-hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666 457777776 343323578999999999976555433334699999999988887653211 1111
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
...++.+.+||++++++... + ...-|+|++-|
T Consensus 99 -~~~~v~l~~gdfl~~~~~~~-------------~----------------------------------~s~AdvVf~Nn 130 (205)
T PF08123_consen 99 -RPGKVELIHGDFLDPDFVKD-------------I----------------------------------WSDADVVFVNN 130 (205)
T ss_dssp ----EEEEECS-TTTHHHHHH-------------H----------------------------------GHC-SEEEE--
T ss_pred -ccccceeeccCccccHhHhh-------------h----------------------------------hcCCCEEEEec
Confidence 23579999999998873211 0 13368999988
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+.|. ++|...++..+..|+ +|-.+|-
T Consensus 131 ~~F~-----~~l~~~L~~~~~~lk-~G~~IIs 156 (205)
T PF08123_consen 131 TCFD-----PDLNLALAELLLELK-PGARIIS 156 (205)
T ss_dssp TTT------HHHHHHHHHHHTTS--TT-EEEE
T ss_pred cccC-----HHHHHHHHHHHhcCC-CCCEEEE
Confidence 7554 788999999999998 7766664
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.6e-06 Score=83.30 Aligned_cols=101 Identities=11% Similarity=0.176 Sum_probs=73.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||++||||.+++++++......|+++|+++.+++.+++|... .+-..+.++++|+..+..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N~~~~~~v~~~Da~~~l~------------- 121 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----NGLENEKVFNKDANALLH------------- 121 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----hCCCceEEEhhhHHHHHh-------------
Confidence 469999999999999998865434799999999999999987421 112246688888754330
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
..++||+|+. |-++ . -..++..+...++ +||++-
T Consensus 122 -------------------------------------~~~~fD~V~l--DP~G---s---~~~~l~~al~~~~-~~gily 155 (382)
T PRK04338 122 -------------------------------------EERKFDVVDI--DPFG---S---PAPFLDSAIRSVK-RGGLLC 155 (382)
T ss_pred -------------------------------------hcCCCCEEEE--CCCC---C---cHHHHHHHHHHhc-CCCEEE
Confidence 0245899987 3433 2 2456778788898 899999
Q ss_pred E---ecc
Q 045407 275 M---DLY 278 (382)
Q Consensus 275 f---Dl~ 278 (382)
+ |+-
T Consensus 156 vSAtD~~ 162 (382)
T PRK04338 156 VTATDTA 162 (382)
T ss_pred EEecCch
Confidence 8 653
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=78.91 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=85.5
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|++||-+|-|.|..+.++++..+-.+|+-||||+..++||++.....-+...-.|+.++.+|..+.-.
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~----------- 144 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR----------- 144 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH-----------
Confidence 367999999999999999999998889999999999999999986552211114799999999766541
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH---HHHHHHHHHhhccCC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD---LVLYFKHVLHALSKK 269 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d---L~~yFr~V~~~L~~p 269 (382)
+. ..+||+|+.= |.... .+++ -..+|+.++++|+ +
T Consensus 145 -------------------------------------~~-~~~fDvIi~D--~tdp~-gp~~~Lft~eFy~~~~~~L~-~ 182 (282)
T COG0421 145 -------------------------------------DC-EEKFDVIIVD--STDPV-GPAEALFTEEFYEGCRRALK-E 182 (282)
T ss_pred -------------------------------------hC-CCcCCEEEEc--CCCCC-CcccccCCHHHHHHHHHhcC-C
Confidence 01 2379999874 44441 2211 1679999999999 9
Q ss_pred CcEEEEe
Q 045407 270 GGIFVMD 276 (382)
Q Consensus 270 GGiFVfD 276 (382)
+||||.-
T Consensus 183 ~Gi~v~q 189 (282)
T COG0421 183 DGIFVAQ 189 (282)
T ss_pred CcEEEEe
Confidence 9999996
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.4e-05 Score=73.19 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...|||+|||+|-.++-+++..- +|+.|+++++..+.|+++. . .-++.+|.+.++|=..= |
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L-~---~lg~~nV~v~~gDG~~G-~------------ 133 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNL-E---TLGYENVTVRHGDGSKG-W------------ 133 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHH-H---HcCCCceEEEECCcccC-C------------
Confidence 35799999999999999999985 7999999999999999873 3 33556799999995321 1
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
-...+||.|+... +..-+. + ...+.|+ +||++
T Consensus 134 -------------------------------------~~~aPyD~I~Vta-aa~~vP---~------~Ll~QL~-~gGrl 165 (209)
T COG2518 134 -------------------------------------PEEAPYDRIIVTA-AAPEVP---E------ALLDQLK-PGGRL 165 (209)
T ss_pred -------------------------------------CCCCCcCEEEEee-ccCCCC---H------HHHHhcc-cCCEE
Confidence 0146899999876 333222 1 4456898 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+=+-
T Consensus 166 v~PvG 170 (209)
T COG2518 166 VIPVG 170 (209)
T ss_pred EEEEc
Confidence 99664
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.6e-05 Score=76.33 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCcccccCCCcc----HhHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHhccc-ccc-CC--CCcceEEEeccCCCc
Q 045407 113 QPLHLQEDFCGTA----LLSTEWLRSDS-----RRTAVGLDLDLEALEWCMENNLN-KVG-AD--GYSRISLFHGNVLQP 179 (382)
Q Consensus 113 ~p~~LLEl~CGTG----~LS~elar~g~-----~~tVvGVDLS~emL~~A~e~~~~-kl~-~d--~~~RI~l~~gDV~~~ 179 (382)
.|.+|.-.||+|| .|++.+++.++ +..++|.|||..+|+.|+.-.-. .-. .. ...+-.+|...--.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~- 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG- 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC-
Confidence 4788999999999 57777777764 57899999999999998864322 000 00 00011222111000
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
. -.|+ +++-+.+.+.. -+.+...+..+.||+|+|=| .+.||... .-.+.+
T Consensus 175 ~--y~v~---~~ir~~V~F~~-----------------------~NLl~~~~~~~~fD~IfCRN-VLIYFd~~-~q~~il 224 (268)
T COG1352 175 S--YRVK---EELRKMVRFRR-----------------------HNLLDDSPFLGKFDLIFCRN-VLIYFDEE-TQERIL 224 (268)
T ss_pred c--EEEC---hHHhcccEEee-----------------------cCCCCCccccCCCCEEEEcc-eEEeeCHH-HHHHHH
Confidence 0 0111 11111222210 00011111256799999998 99998764 558899
Q ss_pred HHHHhhccCCCcEEEEec
Q 045407 260 KHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl 277 (382)
+..+..|+ |||++++..
T Consensus 225 ~~f~~~L~-~gG~LflG~ 241 (268)
T COG1352 225 RRFADSLK-PGGLLFLGH 241 (268)
T ss_pred HHHHHHhC-CCCEEEEcc
Confidence 99999999 999999954
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=73.97 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=47.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++||||||||.++.|-+.||.. .|+.||.|+.++...++|. ++++.. .++.++.+|+....
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~-~~l~~~--~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNL-EKLGLE--DKIRVIKGDAFKFL 105 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHH-HHHT-G--GGEEEEESSHHHHH
T ss_pred CeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHH-HHhCCC--cceeeeccCHHHHH
Confidence 46999999999999999999985 8999999999999988874 444432 36889999975443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=80.40 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=83.1
Q ss_pred cCChhhHHHH-HHHHHHhhCCCCCCcccccCCCccHhHHHHHHh--CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcc
Q 045407 92 QSPKGDISYL-QKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS--DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSR 168 (382)
Q Consensus 92 q~p~~Di~yl-~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~--g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R 168 (382)
|-..=|++-+ .+.|.+..++..+.++||++||||.++++++++ |. ..|+++|+++++++.+++|... . +-..
T Consensus 22 ~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~-N---~~~~ 96 (374)
T TIGR00308 22 MQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGV-REVFANDINPKAVESIKNNVEY-N---SVEN 96 (374)
T ss_pred hhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHH-h---CCCc
Confidence 3455566543 333433233333468999999999999999998 44 4899999999999999987532 1 1124
Q ss_pred eEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc
Q 045407 169 ISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC 248 (382)
Q Consensus 169 I~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y 248 (382)
+.++++|...+.. . ....||+|.. |-+.
T Consensus 97 ~~v~~~Da~~~l~----------------~---------------------------------~~~~fDvIdl--DPfG- 124 (374)
T TIGR00308 97 IEVPNEDAANVLR----------------Y---------------------------------RNRKFHVIDI--DPFG- 124 (374)
T ss_pred EEEEchhHHHHHH----------------H---------------------------------hCCCCCEEEe--CCCC-
Confidence 7888888755440 0 0245898876 5543
Q ss_pred cCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 249 LHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 249 L~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+. ..++..+.+.++ +||++.+
T Consensus 125 --s~---~~fld~al~~~~-~~glL~v 145 (374)
T TIGR00308 125 --TP---APFVDSAIQASA-ERGLLLV 145 (374)
T ss_pred --Cc---HHHHHHHHHhcc-cCCEEEE
Confidence 22 357888889998 8999988
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.3e-06 Score=77.77 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=79.4
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|.+||=+|=|.|.++.++++..+-..|+.||||+.+++.|++........-...|+.++.+|-+....
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----------- 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----------- 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH-----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH-----------
Confidence 588999999999999999998875568999999999999999864321111123589999999766541
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCC-CccEEEEccch-hcccCChhHHHHHHHHHHhhccCCC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLP-ARDIICAFNYS-CCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fDiV~afn~S-~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
- ... +||+|+.=.+. .+.-.. -=-..+|+.+.++|+ ||
T Consensus 145 -----~---------------------------------~~~~~yDvIi~D~~dp~~~~~~-l~t~ef~~~~~~~L~-~~ 184 (246)
T PF01564_consen 145 -----E---------------------------------TQEEKYDVIIVDLTDPDGPAPN-LFTREFYQLCKRRLK-PD 184 (246)
T ss_dssp -----T---------------------------------SSST-EEEEEEESSSTTSCGGG-GSSHHHHHHHHHHEE-EE
T ss_pred -----h---------------------------------ccCCcccEEEEeCCCCCCCccc-ccCHHHHHHHHhhcC-CC
Confidence 0 023 79999874332 111000 012678999999999 99
Q ss_pred cEEEEec
Q 045407 271 GIFVMDL 277 (382)
Q Consensus 271 GiFVfDl 277 (382)
|+|++-.
T Consensus 185 Gv~v~~~ 191 (246)
T PF01564_consen 185 GVLVLQA 191 (246)
T ss_dssp EEEEEEE
T ss_pred cEEEEEc
Confidence 9999976
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-05 Score=77.15 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=52.1
Q ss_pred CcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|..||+|-+|..+++..+ ..+|+|+|.|++||+.|+++.. . ..|+.++++|+.++.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~----~--~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK----P--FGRFTLVHGNFSNLK 81 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc----c--CCcEEEEeCCHHHHH
Confidence 4799999999999999999974 5789999999999999998742 1 358999999998876
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.97 E-value=5e-05 Score=73.93 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=72.1
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
++....+|||+|||+-.....-|..-. ..++..|.++.-+++-++-... + ..++|+-.++.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f-~~I~l~dy~~~N~~el~kWl~~---------------~-~a~DWs~~~~~-- 113 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWF-EEIVLSDYSEQNREELEKWLRK---------------E-GAFDWSPFWKY-- 113 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTE-EEEEEEESSHHHHHHHHHHHTT-----------------TS--THHHHHH--
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhh-cceEEeeccHhhHHHHHHHHCC---------------C-CCCCccHHHHH--
Confidence 444467899999999777544444444 4799999999988866555311 1 11223211110
Q ss_pred hhhhhccccccccCcc---ccchhhh---hhccccccCCCCCcCccCCCCC-CccEEEEccchhcccCChhHHHHHHHHH
Q 045407 190 QKLVRNISLEECDNTL---ETSTIES---AVQDNFTASSGDNCSKQKSSLP-ARDIICAFNYSCCCLHKRADLVLYFKHV 262 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~fDiV~afn~S~~yL~~r~dL~~yFr~V 262 (382)
|.+|-- ..+. ..+.+-+ .+-.|++... ++.......+ ++|+|++++..-+--.++++-.+.++++
T Consensus 114 ---v~~lEg---~~~~~~e~e~~lR~~Vk~Vv~cDV~~~--~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni 185 (256)
T PF01234_consen 114 ---VCELEG---KREKWEEKEEKLRRAVKQVVPCDVTQP--NPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNI 185 (256)
T ss_dssp ---HHHHTT---SSSGHHHHHHHHHHHEEEEEE--TTSS--STTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHH
T ss_pred ---HHhccC---CcchhhhHHHHHHHhhceEEEeeccCC--CCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHH
Confidence 000000 0000 0000101 1112333111 1111112234 5999988876666667999999999999
Q ss_pred HhhccCCCcEEEE
Q 045407 263 LHALSKKGGIFVM 275 (382)
Q Consensus 263 ~~~L~~pGGiFVf 275 (382)
..+|+ |||.|||
T Consensus 186 ~~lLk-pGG~Lil 197 (256)
T PF01234_consen 186 SSLLK-PGGHLIL 197 (256)
T ss_dssp HTTEE-EEEEEEE
T ss_pred HHHcC-CCcEEEE
Confidence 99999 9999999
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.6e-05 Score=78.01 Aligned_cols=58 Identities=16% Similarity=-0.018 Sum_probs=45.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
..++||+|||+|.+...++.+-+..+++|+|+|+.+++.|+++.... . .-..+|.+++
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-p-~l~~~I~~~~ 172 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-P-GLNGAIRLRL 172 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-c-CCcCcEEEEE
Confidence 35799999999999888888867778999999999999999985331 0 0123777764
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3e-05 Score=75.66 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=70.7
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL 171 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l 171 (382)
|+.--|-..++++... .......+|+|+|+|+|.||..|++++. .|++|.||+.++..-++... .+.++.+
T Consensus 10 QnFL~d~~v~~kIv~~-a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~------~~~n~~v 80 (259)
T COG0030 10 QNFLIDKNVIDKIVEA-ANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFA------PYDNLTV 80 (259)
T ss_pred cccccCHHHHHHHHHh-cCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcc------cccceEE
Confidence 3344455556676664 4444357899999999999999999996 59999999999998888742 2458999
Q ss_pred EeccCCCchhhhhcccchhhhhhcccc
Q 045407 172 FHGNVLQPLEAKLVRYEPQKLVRNISL 198 (382)
Q Consensus 172 ~~gDV~~~~~~~~~~~~~~~~~~~~~l 198 (382)
++||++..+++.+. .+-.+|.||-.
T Consensus 81 i~~DaLk~d~~~l~--~~~~vVaNlPY 105 (259)
T COG0030 81 INGDALKFDFPSLA--QPYKVVANLPY 105 (259)
T ss_pred EeCchhcCcchhhc--CCCEEEEcCCC
Confidence 99999999865443 33444555444
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.9e-05 Score=77.92 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=48.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|||+|||||.+|..|++.. ..|+|||+|++|++.|++|... .+-.++.++++|+.++.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~----~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAA----NNIDNVQIIRMSAEEFT 258 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH----cCCCcEEEEEcCHHHHH
Confidence 59999999999999988876 3799999999999999998532 12236999999986543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.5e-05 Score=74.45 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=81.3
Q ss_pred chHHHHHHhhcCCh-hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 82 SKFLLYQQSVQSPK-GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 82 ~~~~LYd~~vq~p~-~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
-||..|.+-|+-++ .-++-|.+.++.- .....|-|+|||-|.|+. +-+..|.-+||-+ .
T Consensus 151 lYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a---------~--- 210 (325)
T KOG3045|consen 151 LYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA---------V--- 210 (325)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh-----ccccceeeeeeec---------C---
Confidence 47777777776544 4445555555542 224578999999999975 3335799999865 1
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
+.| ++..||++.+ + .....||+|
T Consensus 211 -----~~~--V~~cDm~~vP-----------------l---------------------------------~d~svDvaV 233 (325)
T KOG3045|consen 211 -----NER--VIACDMRNVP-----------------L---------------------------------EDESVDVAV 233 (325)
T ss_pred -----CCc--eeeccccCCc-----------------C---------------------------------ccCcccEEE
Confidence 123 5778999887 3 257799998
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
++...++ .++...++.+++.|+ +||++-+ .+-
T Consensus 234 ~CLSLMg-----tn~~df~kEa~RiLk-~gG~l~IAEv~ 266 (325)
T KOG3045|consen 234 FCLSLMG-----TNLADFIKEANRILK-PGGLLYIAEVK 266 (325)
T ss_pred eeHhhhc-----ccHHHHHHHHHHHhc-cCceEEEEehh
Confidence 8776666 689999999999999 9998766 443
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=78.57 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=72.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..|||.|||||.||+--|+.|++ .|+|||-|. +.+.|++-.... + -...|.+++|.|-+..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~-~V~aVe~S~-ia~~a~~iv~~N-~--~~~ii~vi~gkvEdi~-------------- 122 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGAR-KVYAVEASS-IADFARKIVKDN-G--LEDVITVIKGKVEDIE-------------- 122 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcc-eEEEEechH-HHHHHHHHHHhc-C--ccceEEEeecceEEEe--------------
Confidence 46999999999999999999985 999999998 448887764331 1 1236999999987665
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHH-hhccCCCcEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVL-HALSKKGGIF 273 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~-~~L~~pGGiF 273 (382)
| +.+++|||++=--.+|-|. +......-.++ +.|+ |||+.
T Consensus 123 ---L---------------------------------P~eKVDiIvSEWMGy~Ll~--EsMldsVl~ARdkwL~-~~G~i 163 (346)
T KOG1499|consen 123 ---L---------------------------------PVEKVDIIVSEWMGYFLLY--ESMLDSVLYARDKWLK-EGGLI 163 (346)
T ss_pred ---c---------------------------------CccceeEEeehhhhHHHHH--hhhhhhhhhhhhhccC-CCceE
Confidence 3 2478999998644444332 33333333333 4687 99986
Q ss_pred EEe
Q 045407 274 VMD 276 (382)
Q Consensus 274 VfD 276 (382)
+=|
T Consensus 164 ~P~ 166 (346)
T KOG1499|consen 164 YPD 166 (346)
T ss_pred ccc
Confidence 544
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=74.97 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=99.0
Q ss_pred chHHHHHHhhcCChhhHHHH------HHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 82 SKFLLYQQSVQSPKGDISYL------QKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di~yl------~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
-||+.|-.+.|.-+--.+|+ ..++.++.. -..+.|+|.|||+|.||.--++.|.+ +|.+|.-|. |-++|++
T Consensus 141 ~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sD-F~~kiVlDVGaGSGILS~FAaqAGA~-~vYAvEAS~-MAqyA~~ 217 (517)
T KOG1500|consen 141 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSD-FQDKIVLDVGAGSGILSFFAAQAGAK-KVYAVEASE-MAQYARK 217 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccc-cCCcEEEEecCCccHHHHHHHHhCcc-eEEEEehhH-HHHHHHH
Confidence 48888877765444333443 233332221 11357999999999999999999985 999999986 8888887
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
-....+- ..||.++.|-+.++. | +++
T Consensus 218 Lv~~N~~---~~rItVI~GKiEdie-----------------L----------------------------------PEk 243 (517)
T KOG1500|consen 218 LVASNNL---ADRITVIPGKIEDIE-----------------L----------------------------------PEK 243 (517)
T ss_pred HHhcCCc---cceEEEccCcccccc-----------------C----------------------------------chh
Confidence 6432222 248999999987776 4 567
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE-EEE--eccC
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI-FVM--DLYG 279 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi-FVf--Dl~g 279 (382)
.|+|++= -++|+.-.+-....+-++++.|+ |.|. |=- |+|-
T Consensus 244 ~DviISE--PMG~mL~NERMLEsYl~Ark~l~-P~GkMfPT~gdiHl 287 (517)
T KOG1500|consen 244 VDVIISE--PMGYMLVNERMLESYLHARKWLK-PNGKMFPTVGDIHL 287 (517)
T ss_pred ccEEEec--cchhhhhhHHHHHHHHHHHhhcC-CCCcccCcccceee
Confidence 9999985 56777777888888999999999 6664 322 6663
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.6e-05 Score=78.43 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=49.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|||+|||+|.+|..|++... .|+|||+|+.|++.|++|... .+-.++.++++|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~----~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAA----NGIDNVQIIRMSAEEFT 267 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHH----hCCCcEEEEECCHHHHH
Confidence 3599999999999999998763 799999999999999988532 12237999999986543
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=69.86 Aligned_cols=127 Identities=21% Similarity=0.309 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCccccc--CCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQED--FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL 171 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl--~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l 171 (382)
+.-...|++.+.+.+- |.+.+|+ |||-.+|+..++=.. +++|+++|++++..+|+.+.. .+.+. ...|.+
T Consensus 58 ~~d~g~fl~~li~~~~----ak~~lelGvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~-k~agv--~~KI~~ 129 (237)
T KOG1663|consen 58 GPDKGQFLQMLIRLLN----AKRTLELGVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELV-KLAGV--DHKITF 129 (237)
T ss_pred ChHHHHHHHHHHHHhC----CceEEEEecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHH-Hhccc--cceeee
Confidence 4444578888887642 5568898 566666666655433 578999999999999997754 32232 247999
Q ss_pred EeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC
Q 045407 172 FHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK 251 (382)
Q Consensus 172 ~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~ 251 (382)
++|.-++-.. +|+++. ..++||.|+.=-+=-+|
T Consensus 130 i~g~a~esLd---------~l~~~~-----------------------------------~~~tfDfaFvDadK~nY--- 162 (237)
T KOG1663|consen 130 IEGPALESLD---------ELLADG-----------------------------------ESGTFDFAFVDADKDNY--- 162 (237)
T ss_pred eecchhhhHH---------HHHhcC-----------------------------------CCCceeEEEEccchHHH---
Confidence 9999766542 222222 25789999887766666
Q ss_pred hhHHHHHHHHHHhhccCCCcEEEEe--ccCC
Q 045407 252 RADLVLYFKHVLHALSKKGGIFVMD--LYGG 280 (382)
Q Consensus 252 r~dL~~yFr~V~~~L~~pGGiFVfD--l~gg 280 (382)
..|+.+..+.|+ +||++++| +++|
T Consensus 163 ----~~y~e~~l~Llr-~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 163 ----SNYYERLLRLLR-VGGVIVVDNVLWPG 188 (237)
T ss_pred ----HHHHHHHHhhcc-cccEEEEeccccCC
Confidence 389999999999 99999998 4566
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=70.20 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=46.4
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|+|+|||.|-.++.+|+.+. +|++||+|+..|+.|+.|+.- .|- ..+|.++++|..+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~v-YGv--~~~I~~i~gD~~~~~ 61 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEV-YGV--ADNIDFICGDFFELL 61 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHH-TT---GGGEEEEES-HHHHG
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEeCCHHHHH
Confidence 588999999999999999985 699999999999999988643 111 358999999986643
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=71.01 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=74.0
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...|.+||=+|-|-|..+.|++|... +|+-||||+++++.|++....-.++-...|+.++.. +.+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~------------ 134 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD------------ 134 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh------------
Confidence 44589999999999999999999853 799999999999999996543111112346666641 110
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
....+||+|+.= |. .+ ...|+.++++|+ ||
T Consensus 135 ----------------------------------------~~~~~fDVIIvD--s~---~~----~~fy~~~~~~L~-~~ 164 (262)
T PRK00536 135 ----------------------------------------LDIKKYDLIICL--QE---PD----IHKIDGLKRMLK-ED 164 (262)
T ss_pred ----------------------------------------ccCCcCCEEEEc--CC---CC----hHHHHHHHHhcC-CC
Confidence 013579999964 32 11 578899999999 99
Q ss_pred cEEEEe
Q 045407 271 GIFVMD 276 (382)
Q Consensus 271 GiFVfD 276 (382)
|+||.-
T Consensus 165 Gi~v~Q 170 (262)
T PRK00536 165 GVFISV 170 (262)
T ss_pred cEEEEC
Confidence 999995
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=69.98 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=81.9
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCc-ceEEEeccCCCchhhhhcccchhhhhh
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYS-RISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~-RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.++|+|||.|.+.+.+|+..|....+||++....+..|.++..+ .+. +|.++++|..++...
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~-----~~l~Nlri~~~DA~~~l~~------------ 113 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE-----LGLKNLRLLCGDAVEVLDY------------ 113 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----cCCCcEEEEcCCHHHHHHh------------
Confidence 56799999999999999999999999999999999999998643 234 899999998776620
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH-----HHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL-----VLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL-----~~yFr~V~~~L~~p 269 (382)
+ ++.+..|-|..+ ++-=|..+|..- ...++.+.+.|+ |
T Consensus 114 ---~--------------------------------~~~~sl~~I~i~-FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~ 156 (227)
T COG0220 114 ---L--------------------------------IPDGSLDKIYIN-FPDPWPKKRHHKRRLTQPEFLKLYARKLK-P 156 (227)
T ss_pred ---c--------------------------------CCCCCeeEEEEE-CCCCCCCccccccccCCHHHHHHHHHHcc-C
Confidence 1 112256666544 355666666522 345677888998 9
Q ss_pred CcEEEE--ec
Q 045407 270 GGIFVM--DL 277 (382)
Q Consensus 270 GGiFVf--Dl 277 (382)
||.|-| |.
T Consensus 157 gG~l~~aTD~ 166 (227)
T COG0220 157 GGVLHFATDN 166 (227)
T ss_pred CCEEEEEecC
Confidence 999999 65
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0001 Score=72.97 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=57.7
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..++.. ..-+.+-.|||.|-|||.|+..|+..|. +|+++.+|+-|++.-.++-. +.+....+++++||+...+
T Consensus 47 ~~~I~~k-a~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~---gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 47 IDQIVEK-ADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQ---GTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHhc-cCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhc---CCCccceeeEEecccccCC
Confidence 3444443 3344456799999999999999999995 79999999999998877743 2334468999999997766
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.8e-05 Score=66.74 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=71.5
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+..++|+||++|-.+..+++++ ....|+|||+.+. .. ...+..+++|+.++.... .
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------~~--------~~~~~~i~~d~~~~~~~~--------~ 80 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------DP--------LQNVSFIQGDITNPENIK--------D 80 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------GS---------TTEEBTTGGGEEEEHSH--------H
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-------cc--------ccceeeeecccchhhHHH--------h
Confidence 4789999999999999999998 4568999999984 11 124677799987664110 1
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc---chhc----ccCChhHHHHHHHHHHhh
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN---YSCC----CLHKRADLVLYFKHVLHA 265 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn---~S~~----yL~~r~dL~~yFr~V~~~ 265 (382)
++.+.- . ....+|+|+|=- .+-. .+....-+...+.-+...
T Consensus 81 i~~~~~-----------------~---------------~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~ 128 (181)
T PF01728_consen 81 IRKLLP-----------------E---------------SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALEL 128 (181)
T ss_dssp GGGSHG-----------------T---------------TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc-----------------c---------------cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 111000 0 025789998754 0000 112224455666667778
Q ss_pred ccCCCcEEEEeccCCCch
Q 045407 266 LSKKGGIFVMDLYGGTSS 283 (382)
Q Consensus 266 L~~pGGiFVfDl~gg~s~ 283 (382)
|+ |||.||+=++.+...
T Consensus 129 L~-~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 129 LK-PGGTFVIKVFKGPEI 145 (181)
T ss_dssp HC-TTEEEEEEESSSTTS
T ss_pred hc-CCCEEEEEeccCccH
Confidence 98 999999988865443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=74.92 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 106 LIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 106 ~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++......+|+|++||.|.++..||++.. .|+||++++++++.|++|+.. .+..++.|..++..++.
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~----n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAA----NGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHH----cCCCcEEEEeCCHHHHh
Confidence 3344444345799999999999999998885 699999999999999998633 34446899999977665
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=68.55 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=46.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|+|+|||-|-+++..|+.+...+|+++|++|.++++.+++... ++ ..+|..+++|.+++.
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFL 165 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG--
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhc
Confidence 479999999999999999955556899999999999999887543 32 247999999987765
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=69.78 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.-||+||...+....| .+|+|-|-|+|.||..|++ -|+..+|+..|+.++..+.|+++... .+- ...|.+.+
T Consensus 26 pkD~~~I~~~l~i~pG----~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl--~~~v~~~~ 98 (247)
T PF08704_consen 26 PKDISYILMRLDIRPG----SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGL--DDNVTVHH 98 (247)
T ss_dssp HHHHHHHHHHTT--TT-----EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTC--CTTEEEEE
T ss_pred CchHHHHHHHcCCCCC----CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCC--CCCceeEe
Confidence 4577887766544332 3599999999999999996 56778999999999999999998543 222 23799999
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
+||++..
T Consensus 99 ~Dv~~~g 105 (247)
T PF08704_consen 99 RDVCEEG 105 (247)
T ss_dssp S-GGCG-
T ss_pred cceeccc
Confidence 9997543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=67.86 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-------DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-------g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
|.++.-..+......+|+|.+||||.+.++..+. ....+++|+|+++.++.+|+-+..- .......+.+.+
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l--~~~~~~~~~i~~ 111 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL--HGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH--TTHHCBGCEEEE
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh--hccccccccccc
Confidence 3444433333333447999999999999988873 3456899999999999999876421 111223456888
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
+|.+..+
T Consensus 112 ~d~l~~~ 118 (311)
T PF02384_consen 112 GDSLEND 118 (311)
T ss_dssp S-TTTSH
T ss_pred ccccccc
Confidence 9976555
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.5e-05 Score=74.26 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.+....+++.. +..|+|++||+|.+|..+|+... .|+||+++++|++.|++|+.. .+-.++.|+++++.+
T Consensus 183 ~~l~~~~~~~l~~~-~~~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~----N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLS-KGDVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKL----NGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT--TTEEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHH----TT--SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcC-CCcEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHH----cCCCcceEEEeeccc
Confidence 34444444555433 34799999999999999999885 699999999999999998643 233468999888654
Q ss_pred c
Q 045407 179 P 179 (382)
Q Consensus 179 ~ 179 (382)
+
T Consensus 256 ~ 256 (352)
T PF05958_consen 256 F 256 (352)
T ss_dssp C
T ss_pred h
Confidence 4
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=75.35 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=48.9
Q ss_pred CcccccCCCccHhHHHHHHhCC------------------------------------------CCeEEEEeCCHHHHHH
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS------------------------------------------RRTAVGLDLDLEALEW 152 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~------------------------------------------~~tVvGVDLS~emL~~ 152 (382)
..|+|.+||+|.+.+|-|.... ...++|+|+|+.|++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 5799999999999999875311 1369999999999999
Q ss_pred HHHhccccccCCCCcceEEEeccCCCch
Q 045407 153 CMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 153 A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|++|... .+- ..+|.+.++|+.++.
T Consensus 272 A~~N~~~-~g~--~~~i~~~~~D~~~~~ 296 (702)
T PRK11783 272 ARKNARR-AGV--AELITFEVKDVADLK 296 (702)
T ss_pred HHHHHHH-cCC--CcceEEEeCChhhcc
Confidence 9998643 111 236899999997765
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=70.97 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=86.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
..+|+|||-|.++..+...+. ...+-+|-|-.|+.-|+.- .+....++.+.+|=..++
T Consensus 75 ~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~------qdp~i~~~~~v~DEE~Ld--------------- 132 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDA------QDPSIETSYFVGDEEFLD--------------- 132 (325)
T ss_pred ceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhcc------CCCceEEEEEecchhccc---------------
Confidence 467999999999999999996 4899999999999999875 244567888998855444
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
|...++|+|++..-.+| -.+|-..+..+..+|+ |+|+||-
T Consensus 133 -----------------------------------f~ens~DLiisSlslHW----~NdLPg~m~~ck~~lK-PDg~Fia 172 (325)
T KOG2940|consen 133 -----------------------------------FKENSVDLIISSLSLHW----TNDLPGSMIQCKLALK-PDGLFIA 172 (325)
T ss_pred -----------------------------------ccccchhhhhhhhhhhh----hccCchHHHHHHHhcC-CCccchh
Confidence 34677999998874444 2578899999999999 9999999
Q ss_pred eccCCCch
Q 045407 276 DLYGGTSS 283 (382)
Q Consensus 276 Dl~gg~s~ 283 (382)
-++||.+.
T Consensus 173 smlggdTL 180 (325)
T KOG2940|consen 173 SMLGGDTL 180 (325)
T ss_pred HHhccccH
Confidence 99988654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00048 Score=67.66 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=72.4
Q ss_pred CCcccccCCC--ccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCG--TALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CG--TG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
-..+||+||| |.-..-++|+ ..+..+|+=||.||-.|+.|+.-. ......+..++++|+++|..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL----~~~~~g~t~~v~aD~r~p~~--------- 135 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL----ADNPRGRTAYVQADLRDPEA--------- 135 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH----TT-TTSEEEEEE--TT-HHH---------
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh----cCCCCccEEEEeCCCCCHHH---------
Confidence 4579999999 4444556654 367789999999999998888763 22222358999999999972
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
|...-.+ +.+-.-..=+.+.++..+-|+.+.++....++..+++|- ||
T Consensus 136 -iL~~p~~------------------------------~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pG 183 (267)
T PF04672_consen 136 -ILAHPEV------------------------------RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PG 183 (267)
T ss_dssp -HHCSHHH------------------------------HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT
T ss_pred -HhcCHHH------------------------------HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CC
Confidence 1111111 001112234777788888889998999999999999998 99
Q ss_pred cEEEEecc
Q 045407 271 GIFVMDLY 278 (382)
Q Consensus 271 GiFVfDl~ 278 (382)
..+++-..
T Consensus 184 S~L~ish~ 191 (267)
T PF04672_consen 184 SYLAISHA 191 (267)
T ss_dssp -EEEEEEE
T ss_pred ceEEEEec
Confidence 99999655
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00061 Score=69.84 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=51.6
Q ss_pred CcccccCCCccHhHHHHHHhCCC--------------------------------C-------eEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR--------------------------------R-------TAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~--------------------------------~-------tVvGVDLS~emL~~A~e 155 (382)
..|+|..||+|.+.+|-|-.+.+ + ..+|+|+|+.||+.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 47999999999999999988852 1 26799999999999999
Q ss_pred hccccccCCCCcceEEEeccCCCch
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|+.+ +.-...|.|.++|+..+.
T Consensus 273 NA~~---AGv~d~I~f~~~d~~~l~ 294 (381)
T COG0116 273 NARA---AGVGDLIEFKQADATDLK 294 (381)
T ss_pred HHHh---cCCCceEEEEEcchhhCC
Confidence 9765 222347999999998776
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0016 Score=65.91 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=73.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...++|.|-|+|+++-.++..-+ .|-|++.|+.-+-++..... . .|..+-|||.+-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-----~---gV~~v~gdmfq~-------------- 233 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-----P---GVEHVAGDMFQD-------------- 233 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-----C---Ccceeccccccc--------------
Confidence 45788999999999999999555 59999999999988887741 1 277888998542
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.|+-|+|..- -.+..+ +.+++++.|++++.+|. |||..
T Consensus 234 ---------------------------------------~P~~daI~mk-WiLhdw-tDedcvkiLknC~~sL~-~~GkI 271 (342)
T KOG3178|consen 234 ---------------------------------------TPKGDAIWMK-WILHDW-TDEDCVKILKNCKKSLP-PGGKI 271 (342)
T ss_pred ---------------------------------------CCCcCeEEEE-eecccC-ChHHHHHHHHHHHHhCC-CCCEE
Confidence 2445655443 233333 45899999999999999 55555
Q ss_pred E-Eecc
Q 045407 274 V-MDLY 278 (382)
Q Consensus 274 V-fDl~ 278 (382)
| .|..
T Consensus 272 iv~E~V 277 (342)
T KOG3178|consen 272 IVVENV 277 (342)
T ss_pred EEEecc
Confidence 4 4764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00063 Score=71.67 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=77.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+||+|||.|.+.+.+|+..|...++|||++...+..|..+... .+..++.++++|+..+..
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~----~~l~N~~~~~~~~~~~~~------------- 411 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE----QNITNFLLFPNNLDLILN------------- 411 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH----cCCCeEEEEcCCHHHHHH-------------
Confidence 345699999999999999999999999999999988887776422 233467788887643320
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH-----HHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD-----LVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d-----L~~yFr~V~~~L~~p 269 (382)
.|+...+|.|..++ .-=|..++.. -...++..++.|+ |
T Consensus 412 -----------------------------------~~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk-~ 454 (506)
T PRK01544 412 -----------------------------------DLPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLK-D 454 (506)
T ss_pred -----------------------------------hcCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcC-C
Confidence 02244577766554 4445443322 2356777888998 9
Q ss_pred CcEEEE--ec
Q 045407 270 GGIFVM--DL 277 (382)
Q Consensus 270 GGiFVf--Dl 277 (382)
||.+-| |.
T Consensus 455 gG~i~~~TD~ 464 (506)
T PRK01544 455 NGNLVFASDI 464 (506)
T ss_pred CCEEEEEcCC
Confidence 998888 54
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=68.62 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=49.1
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|||++||+|.-|+.+|..- .+..|+++|+|+.-+...+++. .+++ ...|.+++.|.+.+.
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl-~r~G---~~nv~v~~~D~~~~~ 177 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANI-SRCG---VSNVALTHFDGRVFG 177 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH-HHcC---CCeEEEEeCchhhhh
Confidence 3579999999999999998863 3358999999999999888864 4343 346788888876554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00047 Score=58.71 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=49.2
Q ss_pred ccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|+|||+|.++..+++.++..+|+++|.++++++.++++... .+..++.+++..+.+-.
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~----n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL----NNLPNVVLLNAAVGDRD 61 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH----cCCCcEEEEEeeeeCCC
Confidence 7899999999999999999877999999999999999987422 12235888887775433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00018 Score=69.46 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=51.6
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+..|+|.|||.|-.++.+|.+|+ .|++||+||.=++.|+.|+.- -|- .+||.|+|||+++.-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei-YGI--~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV-YGV--PDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee-ecC--CceeEEEechHHHHH
Confidence 355788999999999999999998 499999999999888877533 122 249999999997764
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=62.06 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=50.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.++||+|+|||.|+.|-+-||. ..|+.||.|..++...++| ++.++.. .++.++.+|..
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N-~~~l~~~--~~~~~~~~da~ 103 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKEN-LKALGLE--GEARVLRNDAL 103 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHH-HHHhCCc--cceEEEeecHH
Confidence 4799999999999999999998 5999999999999999998 4434422 47888999986
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00098 Score=58.20 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCCCcccccCCCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 112 RQPLHLQEDFCGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
..+.+|.|+|||.|-||..|+. ..+..+|+|||.++.+++.|.+.... +...-..++.+.++++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK-LGSDLEKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH-hcchhhccchhhccch
Confidence 4467899999999999999998 13677999999999999999988643 3211113455555544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00022 Score=75.16 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=74.5
Q ss_pred ChhhHHHHHHHHHHhh---CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEE---eCCHHHHHHHHHhccccccCCCCc
Q 045407 94 PKGDISYLQKFFLIYV---GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGL---DLDLEALEWCMENNLNKVGADGYS 167 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~---ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGV---DLS~emL~~A~e~~~~kl~~d~~~ 167 (382)
|.|--.|+..+-.+.. .+...+.+||.|||+|.+++.|+.++-- ++.+ |-.+..++.|.++-+.
T Consensus 95 ~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~--t~s~a~~d~~~~qvqfaleRGvp-------- 164 (506)
T PF03141_consen 95 PHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT--TMSFAPNDEHEAQVQFALERGVP-------- 164 (506)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce--EEEcccccCCchhhhhhhhcCcc--------
Confidence 3444466665554421 1223567899999999999999999842 2222 4445566777776432
Q ss_pred ceEEEeccC--CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch
Q 045407 168 RISLFHGNV--LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS 245 (382)
Q Consensus 168 RI~l~~gDV--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S 245 (382)
.+-+-+ ..++ |....||+|=|.--.
T Consensus 165 ---a~~~~~~s~rLP--------------------------------------------------fp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 165 ---AMIGVLGSQRLP--------------------------------------------------FPSNAFDMVHCSRCL 191 (506)
T ss_pred ---hhhhhhcccccc--------------------------------------------------CCccchhhhhccccc
Confidence 111111 1222 335679999777666
Q ss_pred hcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 246 CCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 246 ~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+.|.... -.+|-.|-+.|+ |||.||.--
T Consensus 192 i~W~~~~---g~~l~evdRvLR-pGGyfv~S~ 219 (506)
T PF03141_consen 192 IPWHPND---GFLLFEVDRVLR-PGGYFVLSG 219 (506)
T ss_pred ccchhcc---cceeehhhhhhc-cCceEEecC
Confidence 6775543 358889999999 999999853
|
; GO: 0008168 methyltransferase activity |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=63.43 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.++... ++-.....|+|+|.|+|.+|..|++.+ ..|++|++|+.+.+.-+++.. ...++.++++|+++
T Consensus 17 ~~~~~Iv~~-~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDA-LDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHH-HTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTT
T ss_pred HHHHHHHHh-cCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhc
Confidence 444555543 333335689999999999999999999 479999999999999888742 23589999999998
Q ss_pred chh
Q 045407 179 PLE 181 (382)
Q Consensus 179 ~~~ 181 (382)
...
T Consensus 88 ~~~ 90 (262)
T PF00398_consen 88 WDL 90 (262)
T ss_dssp SCG
T ss_pred ccc
Confidence 874
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.017 Score=57.12 Aligned_cols=218 Identities=21% Similarity=0.242 Sum_probs=126.7
Q ss_pred HHHHHhhcCChh-----hHHHHHHHHHHhhCCCCCCcccccCCCccH----hHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 85 LLYQQSVQSPKG-----DISYLQKFFLIYVGGRQPLHLQEDFCGTAL----LSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 85 ~LYd~~vq~p~~-----Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~----LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
.|+++...=|+| |++-++.+...-+.--.+..+.|||.|+-. |.-.++.+|+-.+-+-+|+|...|.--.+
T Consensus 45 ~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ 124 (321)
T COG4301 45 ELFEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATAT 124 (321)
T ss_pred HHHHHHhccccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHH
Confidence 456666555654 445555554433322226789999999764 45556677777889999999999975443
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
... ..-....|.-+++|...+.- . .+..+
T Consensus 125 ai~---~~y~~l~v~~l~~~~~~~La----------------~--------------------------------~~~~~ 153 (321)
T COG4301 125 AIL---REYPGLEVNALCGDYELALA----------------E--------------------------------LPRGG 153 (321)
T ss_pred HHH---HhCCCCeEeehhhhHHHHHh----------------c--------------------------------ccCCC
Confidence 322 12234567777888644430 0 11234
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE--eccC-------------CCchhhhh---H-hhhcc-CC
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM--DLYG-------------GTSSEQKL---R-LQRRF-AN 295 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf--Dl~g-------------g~s~e~kl---~-~~R~~-~~ 295 (382)
.-++|-.-.|++-|. +.+-..+|..++.+|+ ||-.|++ |+-. |-+.+-++ + ..|.| .|
T Consensus 154 ~Rl~~flGStlGN~t-p~e~~~Fl~~l~~a~~-pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvLa~lNr~f~~n 231 (321)
T COG4301 154 RRLFVFLGSTLGNLT-PGECAVFLTQLRGALR-PGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVLAHLNRVFGGN 231 (321)
T ss_pred eEEEEEecccccCCC-hHHHHHHHHHHHhcCC-CcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccC
Confidence 556666667777655 5677889999999999 9999999 5431 11111111 1 12333 23
Q ss_pred eEEE-Eee-cccccccceEEE---------------EEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 296 FTYV-WEQ-AEFDIIERKTRI---------------SLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 296 ~tyv-Weq-~~fD~~~~~~ri---------------~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
|..- |+- +-||.....+++ .+++.++.+. .+ .+..-|=|++++|+..|+.+||+-|+.|
T Consensus 232 FD~~dfeh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age-~i---LtE~S~Kfslq~irq~laa~gl~~v~~w 307 (321)
T COG4301 232 FDVDDFEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGE-TI---LTEISRKFSLQAIRQQLAAAGLEPVQKW 307 (321)
T ss_pred CCcchhhhHhhhhhhHHHHHHHhhcCCceEEEecCccceeecCCCc-ee---ehhhhhhCCHHHHHHHHHhcCCeEeeeh
Confidence 3222 321 123332222222 2333333333 11 1222367899999999999999999988
Q ss_pred e
Q 045407 359 L 359 (382)
Q Consensus 359 ~ 359 (382)
-
T Consensus 308 t 308 (321)
T COG4301 308 T 308 (321)
T ss_pred h
Confidence 4
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0018 Score=65.41 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHH-------HHHHHhccccccCCCCcceEEEeccCCCchhhhhcc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEAL-------EWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVR 186 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL-------~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~ 186 (382)
+-.||=.|||+|+|+..|+..|+ .+.|-.+|--|| +.|...|.= .=-.|+|+.........++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~-------~IYPfIh~~sn~~~~dDQl- 220 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQF-------TIYPFIHQYSNSLSRDDQL- 220 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcE-------EEEeeeecccccccccccc-
Confidence 44678899999999999999997 599999988776 333333211 1135777776555533332
Q ss_pred cchhhhhhccccccccCccccchhhhhhccccc--c-CCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHH
Q 045407 187 YEPQKLVRNISLEECDNTLETSTIESAVQDNFT--A-SSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVL 263 (382)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~ 263 (382)
|-|+..... +..++...++- . -+=.+..+..-..+.+|+|+.. +++.+-..+..|+..++
T Consensus 221 -------rpi~~PD~~------p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc----fFIDTa~NileYi~tI~ 283 (369)
T KOG2798|consen 221 -------RPISIPDIH------PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC----FFIDTAHNILEYIDTIY 283 (369)
T ss_pred -------ccccCcccc------ccccCCCCCCccccccceeEEecCcCCCCccceEEEE----EEeechHHHHHHHHHHH
Confidence 222221000 00000000000 0 0001111122223569998865 46778889999999999
Q ss_pred hhccCCCcEEEE
Q 045407 264 HALSKKGGIFVM 275 (382)
Q Consensus 264 ~~L~~pGGiFVf 275 (382)
..|+ |||+.|.
T Consensus 284 ~iLk-~GGvWiN 294 (369)
T KOG2798|consen 284 KILK-PGGVWIN 294 (369)
T ss_pred Hhcc-CCcEEEe
Confidence 9999 9999886
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=60.40 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=47.9
Q ss_pred CcccccCCCccHhHHHHHHh-CCC-CeEEEEeCCHHHHHHHHHhcccccc----CC--CCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSR-RTAVGLDLDLEALEWCMENNLNKVG----AD--GYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~-~tVvGVDLS~emL~~A~e~~~~kl~----~d--~~~RI~l~~gDV~~~~ 180 (382)
...||+|.|||-|++.+++. |.. ..++|||+-++.++.+.+|...-+. .. ...+++++.||.+...
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 35899999999999998842 222 2359999999999999987543221 01 1346889999987765
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=62.77 Aligned_cols=94 Identities=11% Similarity=0.101 Sum_probs=67.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...|||+|.|-|..+..++..-. +|.+-++|+-|...-+++ |+ .++ +..+..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k--------g~---~vl--~~~~w~------------- 146 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK--------GF---TVL--DIDDWQ------------- 146 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC--------CC---eEE--ehhhhh-------------
Confidence 45799999999999999988764 699999999995433333 22 222 222211
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
- ...+||+|.|+| -|..-++-...++.++++|+ |+|++
T Consensus 147 ----~---------------------------------~~~~fDvIscLN----vLDRc~~P~~LL~~i~~~l~-p~G~l 184 (265)
T PF05219_consen 147 ----Q---------------------------------TDFKFDVISCLN----VLDRCDRPLTLLRDIRRALK-PNGRL 184 (265)
T ss_pred ----c---------------------------------cCCceEEEeehh----hhhccCCHHHHHHHHHHHhC-CCCEE
Confidence 0 034699999998 33333556778899999999 89999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
|+=+
T Consensus 185 ilAv 188 (265)
T PF05219_consen 185 ILAV 188 (265)
T ss_pred EEEE
Confidence 9965
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0076 Score=57.27 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=39.8
Q ss_pred CcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|+|||+-+|..|...++.... ..|+|+|+.|=-+ + ..|.++++|++.++
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~-----~~V~~iq~d~~~~~ 98 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------I-----PGVIFLQGDITDED 98 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------C-----CCceEEeeeccCcc
Confidence 46899999999999988877643 2399999999111 1 13999999999987
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0076 Score=56.36 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRR-TAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~-tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...+-|||+|-|||-++-.++++|.+- .++.+..|++....-+++. ..+.++.||.-++.-
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~--------- 108 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRT--------- 108 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHH---------
Confidence 334579999999999999999998643 5789999999998887775 235689998755540
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+-+.+..+.||.|+|..=-.+. ...-=++.+..+...|. .|
T Consensus 109 ------------------------------------~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~-~g 149 (194)
T COG3963 109 ------------------------------------TLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLP-AG 149 (194)
T ss_pred ------------------------------------HHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcC-CC
Confidence 0111335679999997755553 22445788999999999 89
Q ss_pred cEEEEeccC
Q 045407 271 GIFVMDLYG 279 (382)
Q Consensus 271 GiFVfDl~g 279 (382)
|.||-=-||
T Consensus 150 g~lvqftYg 158 (194)
T COG3963 150 GPLVQFTYG 158 (194)
T ss_pred CeEEEEEec
Confidence 999986665
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0076 Score=56.99 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=48.3
Q ss_pred CCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.++.|..++|+|||+|-.++-|++. +++....+.||+|.+++.-++-+.. ...++..++.|+.
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-----n~~~~~~V~tdl~ 103 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-----NRVHIDVVRTDLL 103 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-----cCCccceeehhHH
Confidence 4556888999999999999988764 5667789999999999986665422 2235778887753
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0012 Score=54.04 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=43.2
Q ss_pred cccCCCccHhHHHHHHhCCC---CeEEEEeCCH---HHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 118 QEDFCGTALLSTEWLRSDSR---RTAVGLDLDL---EALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 118 LEl~CGTG~LS~elar~g~~---~tVvGVDLS~---emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
+|+||..|.-+..|++.-.. .++++||..+ ..-++.++... ..++.++++|..+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-------~~~~~~~~g~s~~~l~---------- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-------SDRVEFIQGDSPDFLP---------- 63 (106)
T ss_dssp --------------------------EEEESS------------GGG--------BTEEEEES-THHHHH----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-------CCeEEEEEcCcHHHHH----------
Confidence 58998888887777764322 2699999999 44444443221 1379999999744320
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
. + ..+++|+|..=- -|+.+.....|+.+...|+ |||
T Consensus 64 ---~--~---------------------------------~~~~~dli~iDg-----~H~~~~~~~dl~~~~~~l~-~gg 99 (106)
T PF13578_consen 64 ---S--L---------------------------------PDGPIDLIFIDG-----DHSYEAVLRDLENALPRLA-PGG 99 (106)
T ss_dssp ---H--H---------------------------------HH--EEEEEEES--------HHHHHHHHHHHGGGEE-EEE
T ss_pred ---H--c---------------------------------CCCCEEEEEECC-----CCCHHHHHHHHHHHHHHcC-CCe
Confidence 0 1 024677775533 1445788999999999999 999
Q ss_pred EEEEe
Q 045407 272 IFVMD 276 (382)
Q Consensus 272 iFVfD 276 (382)
+.|||
T Consensus 100 viv~d 104 (106)
T PF13578_consen 100 VIVFD 104 (106)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0031 Score=66.16 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHHhhCC---CCCCcccccCCCccHhHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHhc
Q 045407 94 PKGDISYLQKFFLIYVGG---RQPLHLQEDFCGTALLSTEWLRSDS--------RRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~gg---r~p~~LLEl~CGTG~LS~elar~g~--------~~tVvGVDLS~emL~~A~e~~ 157 (382)
|..=+.++.+.+....+. ..+.+|+|.+||||.+.+.+++... ...++|+|+|+.++.+|+.+.
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 344445666555332221 1345799999999999999887653 247899999999999999874
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0021 Score=68.07 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=58.9
Q ss_pred HHHHHHhhcCChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc
Q 045407 84 FLLYQQSVQSPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV 161 (382)
Q Consensus 84 ~~LYd~~vq~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl 161 (382)
...+|-. .+.+++ +|+.+.... ..-..++|++||||.++..+++.-. .|+||.+|+++++-|+.|+..
T Consensus 358 ~AFFQ~N--t~~aevLys~i~e~~~l----~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~-- 427 (534)
T KOG2187|consen 358 GAFFQTN--TSAAEVLYSTIGEWAGL----PADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQI-- 427 (534)
T ss_pred chhhccC--cHHHHHHHHHHHHHhCC----CCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchh--
Confidence 3444433 344455 555555433 2225789999999999999998875 699999999999999998743
Q ss_pred cCCCCcceEEEecc
Q 045407 162 GADGYSRISLFHGN 175 (382)
Q Consensus 162 ~~d~~~RI~l~~gD 175 (382)
.+-++..|++|-
T Consensus 428 --NgisNa~Fi~gq 439 (534)
T KOG2187|consen 428 --NGISNATFIVGQ 439 (534)
T ss_pred --cCccceeeeecc
Confidence 456789999993
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0055 Score=62.19 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=51.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|+|+|+|-|-+|+..|+.|.. +|+++||.|.++...++|..- -+ -..+|..++||.++..
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~L-N~--v~~~v~~i~gD~rev~ 251 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRL-NK--VEGRVEPILGDAREVA 251 (341)
T ss_pred CEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHh-cC--ccceeeEEeccHHHhh
Confidence 37999999999999999999975 499999999999999988532 11 1236999999998876
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.009 Score=58.19 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCCCcccccCCCccHhHHHHHHhC---CCCeEEEEeCCHHHHHHHHHhc
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSD---SRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g---~~~tVvGVDLS~emL~~A~e~~ 157 (382)
.-.|.+|||+|||+|. ..||-.. .-.++++||.|+.|++.|+.-.
T Consensus 31 ~f~P~~vLD~GsGpGt--a~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGT--ALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCCCceEEEecCChHH--HHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 4458899999999995 4455331 2247999999999999988754
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.005 Score=59.79 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=45.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++|||||.|-++..|.+.|.+ .|+++|+++.+++..+.|... .++++|+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~----------~~~~~Di~~~~ 55 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPN----------KLIEGDITKID 55 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCC----------CCccCccccCc
Confidence 4789999999999999999975 789999999999998887521 16788988776
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.017 Score=61.04 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=80.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
.+|-+|||--.|+..+-+.|++ .++-+|+|+..++....++. ....-+.+...||+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~-dI~~iD~S~V~V~~m~~~~~-----~~~~~~~~~~~d~~~l~--------------- 109 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE-DITNIDSSSVVVAAMQVRNA-----KERPEMQMVEMDMDQLV--------------- 109 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC-CceeccccHHHHHHHHhccc-----cCCcceEEEEecchhcc---------------
Confidence 6899999999999999999995 99999999999988877762 23345888899988776
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh------HHHHHHHHHHhhccCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA------DLVLYFKHVLHALSKK 269 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~------dL~~yFr~V~~~L~~p 269 (382)
|..+.||+|+.=.+-=.-+.+.. -+-..+..|.+.|+ +
T Consensus 110 -----------------------------------fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~ 153 (482)
T KOG2352|consen 110 -----------------------------------FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLA-P 153 (482)
T ss_pred -----------------------------------CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhc-c
Confidence 23566777776554433333333 34478899999999 9
Q ss_pred CcEEEEec
Q 045407 270 GGIFVMDL 277 (382)
Q Consensus 270 GGiFVfDl 277 (382)
||+|+.=.
T Consensus 154 ~gk~~svt 161 (482)
T KOG2352|consen 154 GGKYISVT 161 (482)
T ss_pred CCEEEEEE
Confidence 99988733
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.022 Score=56.28 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=71.0
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH--hCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR--SDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar--~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
|+.-|.+++ +-|... +... .+..|.+|+=+|||+==+|.-+.. .+....|+++|+|+++++.|++-..+.
T Consensus 98 Yy~nY~~L~---~lE~~~----l~~~-~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~ 169 (276)
T PF03059_consen 98 YYPNYEKLV---RLEYAA----LRIH-AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD 169 (276)
T ss_dssp THHHHHHHH---HHHHH-----HTT---TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--
T ss_pred cHHHHHHHH---HHHHHH----Hhhc-CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc
Confidence 667777773 222222 2222 344578899999996655554443 455567999999999999998753311
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
++ -..+|.|..+|+.+... .+..||+|+
T Consensus 170 ~~--L~~~m~f~~~d~~~~~~--------------------------------------------------dl~~~DvV~ 197 (276)
T PF03059_consen 170 LG--LSKRMSFITADVLDVTY--------------------------------------------------DLKEYDVVF 197 (276)
T ss_dssp -H--H-SSEEEEES-GGGG-G--------------------------------------------------G----SEEE
T ss_pred cc--ccCCeEEEecchhcccc--------------------------------------------------ccccCCEEE
Confidence 11 13489999999865541 146799886
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
-.. +-- .+.++=...|.++.++++ ||.+.++=
T Consensus 198 lAa--lVg-~~~e~K~~Il~~l~~~m~-~ga~l~~R 229 (276)
T PF03059_consen 198 LAA--LVG-MDAEPKEEILEHLAKHMA-PGARLVVR 229 (276)
T ss_dssp E-T--T-S-----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred Ehh--hcc-cccchHHHHHHHHHhhCC-CCcEEEEe
Confidence 543 222 233466899999999999 99999985
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.014 Score=59.68 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=75.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
.+++++||-|-.+.+.+.-.. ..++|+|+++.-+..+...+.... -.....++.+|..+.+
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~-~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~--------------- 173 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK-AGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP--------------- 173 (364)
T ss_pred cccccCcCcCchhHHHHHhcc-CCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC---------------
Confidence 378999999999999887775 479999999999988888765421 1123334555554444
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
|....||.|-++ ++.||..+ +...++.++++|+ |||+|+.
T Consensus 174 -----------------------------------fedn~fd~v~~l-d~~~~~~~---~~~~y~Ei~rv~k-pGG~~i~ 213 (364)
T KOG1269|consen 174 -----------------------------------FEDNTFDGVRFL-EVVCHAPD---LEKVYAEIYRVLK-PGGLFIV 213 (364)
T ss_pred -----------------------------------CCccccCcEEEE-eecccCCc---HHHHHHHHhcccC-CCceEEe
Confidence 335678988766 68898764 5778999999998 9999997
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.015 Score=52.21 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
..++++++++.. ....|||.|||+|..+..-.+.| ++.+|+|++++..+.|.+
T Consensus 179 ~l~~~lI~~~t~--~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTN--PGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhc--cceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 334444444331 13469999999999988888888 579999999999998875
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.015 Score=55.85 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=33.9
Q ss_pred CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 233 LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.||+|++.. .+||+.+..+=-..++++++.|+ ++|.
T Consensus 102 ~e~FdvIs~SL-VLNfVP~p~~RG~Ml~r~~~fL~-~~g~ 139 (219)
T PF11968_consen 102 SEKFDVISLSL-VLNFVPDPKQRGEMLRRAHKFLK-PPGL 139 (219)
T ss_pred ccceeEEEEEE-EEeeCCCHHHHHHHHHHHHHHhC-CCCc
Confidence 46799998876 99999999999999999999999 6776
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=56.43 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=47.5
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-----ccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-----VGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-----l~~d~~~RI~l~~gDV~~~~ 180 (382)
+|||+++|+|+.+.+++.+|. +|++|+-|+.+..+.+++.... ++..-..||+++++|..+..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 799999999999999999996 5999999998877766553220 01100147999999986654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.018 Score=55.02 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=74.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+-|||.|||.||.--+..-- +|+++.+||---++|.+|. ++ .+...++.+.||.++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~--~v--~g~~n~evv~gDA~~y~-------------- 93 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENL--HV--PGDVNWEVVVGDARDYD-------------- 93 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcC--CC--CCCcceEEEeccccccc--------------
Confidence 3578999999999988777754 6999999999888888873 22 34568999999998776
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE-ccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA-FNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a-fn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
....|+|+| +.+..- . .+..+.+++.|...|+ ..|..
T Consensus 94 --------------------------------------fe~ADvvicEmlDTaL--i-~E~qVpV~n~vleFLr-~d~ti 131 (252)
T COG4076 94 --------------------------------------FENADVVICEMLDTAL--I-EEKQVPVINAVLEFLR-YDPTI 131 (252)
T ss_pred --------------------------------------ccccceeHHHHhhHHh--h-cccccHHHHHHHHHhh-cCCcc
Confidence 244577765 333321 2 2456889999999999 77776
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
|=
T Consensus 132 iP 133 (252)
T COG4076 132 IP 133 (252)
T ss_pred cc
Confidence 64
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.043 Score=54.98 Aligned_cols=61 Identities=20% Similarity=0.138 Sum_probs=50.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|.=||.|-+|..+++.-+..+|+|+|.|+++++.|++.... -..|+.++++|-.++.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~-----~~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD-----FEGRVVLIHDNFANFF 82 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh-----cCCcEEEEeCCHHHHH
Confidence 468899999999999999885447999999999999999987421 1248999999987765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.073 Score=50.70 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCCcccccCC---CccHhHHHHHH-hCCCCeEEEEeCCHHHHHHH-HHhccccccCCCCcceEEEeccCCCch
Q 045407 113 QPLHLQEDFC---GTALLSTEWLR-SDSRRTAVGLDLDLEALEWC-MENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 113 ~p~~LLEl~C---GTG~LS~elar-~g~~~tVvGVDLS~emL~~A-~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|..|+|+|- |+..+.+.+++ .|..++|+|||++....+.. .+.+ .-..||.+++||-.++.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h------p~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH------PMSPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc------cccCceEEEECCCCCHH
Confidence 3889999986 44444444333 33667999999987555321 1111 11359999999988887
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.0076 Score=52.26 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=32.7
Q ss_pred CccEEEEccchhcccC---ChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 235 ARDIICAFNYSCCCLH---KRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 235 ~fDiV~afn~S~~yL~---~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
+||+|+||.-+-| +| -.+.|++.|+++++.|+ |||+||+.--
T Consensus 1 ~yDvilclSVtkW-IHLn~GD~Gl~~~f~~~~~~L~-pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKW-IHLNWGDEGLKRFFRRIYSLLR-PGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHH-HHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE--
T ss_pred CccEEEEEEeeEE-EEecCcCHHHHHHHHHHHHhhC-CCCEEEEeCC
Confidence 4899999975543 44 45789999999999999 9999999754
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.024 Score=56.53 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=90.1
Q ss_pred chHHHHHHhhcCChhhH----HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 82 SKFLLYQQSVQSPKGDI----SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di----~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..|.+|+..+-.-+.+. .-+..|.....-| ..+||.|||-|..... . |.--++|.|++...+..|+..+
T Consensus 13 yVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~g---sv~~d~gCGngky~~~---~-p~~~~ig~D~c~~l~~~ak~~~ 85 (293)
T KOG1331|consen 13 YVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTG---SVGLDVGCGNGKYLGV---N-PLCLIIGCDLCTGLLGGAKRSG 85 (293)
T ss_pred HhHHHHHHhhhhccccccCccHHHHHHHhccCCc---ceeeecccCCcccCcC---C-CcceeeecchhhhhccccccCC
Confidence 35778998875533333 2334444433323 3589999999976422 1 2235999999999998887764
Q ss_pred cccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCcc
Q 045407 158 LNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARD 237 (382)
Q Consensus 158 ~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 237 (382)
. ..+..+|++..+ +..+.||
T Consensus 86 ~----------~~~~~ad~l~~p--------------------------------------------------~~~~s~d 105 (293)
T KOG1331|consen 86 G----------DNVCRADALKLP--------------------------------------------------FREESFD 105 (293)
T ss_pred C----------ceeehhhhhcCC--------------------------------------------------CCCCccc
Confidence 1 146778988777 2357799
Q ss_pred EEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 238 IICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 238 iV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
++++.- ++-+|.++.-=..+++++.+.|+ |||--++=++
T Consensus 106 ~~lsia-vihhlsT~~RR~~~l~e~~r~lr-pgg~~lvyvw 144 (293)
T KOG1331|consen 106 AALSIA-VIHHLSTRERRERALEELLRVLR-PGGNALVYVW 144 (293)
T ss_pred cchhhh-hhhhhhhHHHHHHHHHHHHHHhc-CCCceEEEEe
Confidence 988875 66678888888999999999999 9998666554
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.11 Score=51.63 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=43.2
Q ss_pred ccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|+|||||-|-++.-|-+.|.+ .|.++|+++.+.+.-+.|.. . .++++|+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~-~~~a~e~~~~a~~ty~~N~~---------~-~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK-CVFASEIDKYAQKTYEANFG---------N-KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHhCC---------C-CCCccChhhhh
Confidence 479999999999999999975 67789999999998888751 1 34678887765
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.079 Score=54.24 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=39.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..++|+||+||-.|-.|+++|. .|+|||..+ |++.... + .+|..+++|.-.
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~--l~~~L~~-------~--~~V~h~~~d~fr 263 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP--MAQSLMD-------T--GQVEHLRADGFK 263 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC--EEEEEechh--cCHhhhC-------C--CCEEEEeccCcc
Confidence 3689999999999999999996 799999776 4332221 1 478888888633
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.072 Score=51.87 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
.-++++++.+. .....|||.|||+|..++.-.+.| +..+|+||+++-.+.|+++.
T Consensus 196 ~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 196 ALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence 44555555543 112369999999999888877777 57999999999999999984
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.16 Score=52.79 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cc--cCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KV--GADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl--~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..++|=+|-|-|+-..+++|.=--.+++=|||||.|++.++.+..- ++ ++-...|+..+..|.-++..
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr--------- 360 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR--------- 360 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH---------
Confidence 3578899999999999998875245899999999999999854221 11 11124578888877644431
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE-----ccchhcccCChhHHHHHHHHHHhh
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA-----FNYSCCCLHKRADLVLYFKHVLHA 265 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a-----fn~S~~yL~~r~dL~~yFr~V~~~ 265 (382)
- ....||.|+. -|.|+.-|-+ +.+++-+.++
T Consensus 361 -------~---------------------------------a~~~fD~vIVDl~DP~tps~~rlYS----~eFY~ll~~~ 396 (508)
T COG4262 361 -------T---------------------------------AADMFDVVIVDLPDPSTPSIGRLYS----VEFYRLLSRH 396 (508)
T ss_pred -------h---------------------------------hcccccEEEEeCCCCCCcchhhhhh----HHHHHHHHHh
Confidence 0 1346776664 3455554433 5678899999
Q ss_pred ccCCCcEEEEec
Q 045407 266 LSKKGGIFVMDL 277 (382)
Q Consensus 266 L~~pGGiFVfDl 277 (382)
|+ ++|++|.--
T Consensus 397 l~-e~Gl~VvQa 407 (508)
T COG4262 397 LA-ETGLMVVQA 407 (508)
T ss_pred cC-cCceEEEec
Confidence 99 999999954
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=46.32 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=59.6
Q ss_pred eEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhcccc
Q 045407 139 TAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNF 218 (382)
Q Consensus 139 tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (382)
+|.|.|+=+++|+.++++..+... ..|+.|++..=.++..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~---~~~v~li~~sHe~l~~------------------------------------- 40 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL---EDRVTLILDSHENLDE------------------------------------- 40 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGG-------------------------------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC---CCcEEEEECCHHHHHh-------------------------------------
Confidence 499999999999999998654211 2389999976544431
Q ss_pred ccCCCCCcCccCCCCC-CccEEEEccchhcccC--------ChhHHHHHHHHHHhhccCCCcEEEEeccCCCch
Q 045407 219 TASSGDNCSKQKSSLP-ARDIICAFNYSCCCLH--------KRADLVLYFKHVLHALSKKGGIFVMDLYGGTSS 283 (382)
Q Consensus 219 ~~~~~~~~~~~~~~~~-~fDiV~afn~S~~yL~--------~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~ 283 (382)
+..+ ++|+|+ |-++||. ..+.-+..++.+...|+ |||++++=+|.|.+-
T Consensus 41 ------------~i~~~~v~~~i---FNLGYLPggDk~i~T~~~TTl~Al~~al~lL~-~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 41 ------------YIPEGPVDAAI---FNLGYLPGGDKSITTKPETTLKALEAALELLK-PGGIITIVVYPGHPG 98 (140)
T ss_dssp ------------T--S--EEEEE---EEESB-CTS-TTSB--HHHHHHHHHHHHHHEE-EEEEEEEEE--STCH
T ss_pred ------------hCccCCcCEEE---EECCcCCCCCCCCCcCcHHHHHHHHHHHHhhc-cCCEEEEEEeCCCCC
Confidence 1122 466643 4567875 45677889999999999 999999999987763
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.046 Score=51.96 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=45.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++|||||-|-++.-|.+.|.+ .|.++|+++.+.+.-+.|. . ....+|+.+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~-~~~a~e~~~~a~~~y~~N~---------~--~~~~~Di~~~~ 54 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE-VVWAVEIDPDACETYKANF---------P--EVICGDITEID 54 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE-EEEEEESSHHHHHHHHHHH---------T--EEEESHGGGCH
T ss_pred cEEEEccCccHHHHHHHhcCcE-EEEEeecCHHHHHhhhhcc---------c--ccccccccccc
Confidence 3689999999999999999975 8999999999999888875 1 67889998887
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.055 Score=47.14 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCC
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLD 146 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS 146 (382)
+=++||..++..--+...+..+.|+|||.|+|.--|.+-|+ .=.|+|+=
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 34589888886533333466788999999999999999996 47888863
|
; GO: 0008168 methyltransferase activity |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.1 Score=49.65 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=35.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..|||.|||+|..+..-.+.| +..+|+||+++..+.|.++.
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHH
Confidence 369999999999888877777 47999999999999998874
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.27 Score=48.31 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=65.1
Q ss_pred CchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccc
Q 045407 81 PSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
......|..=---.+...+.+.-..+.-.. ...|||++++.|.=++.++..-. ...++++|+++.-|..-+++. .
T Consensus 56 i~~l~~~~~G~~~vQd~sS~l~~~~L~~~~---~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~-~ 131 (283)
T PF01189_consen 56 ICSLPEFKNGLFYVQDESSQLVALALDPQP---GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENL-K 131 (283)
T ss_dssp GGGSHHHHTTSEEEHHHHHHHHHHHHTTTT---TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHH-H
T ss_pred hhhchhhhCCcEEecccccccccccccccc---cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHH-H
Confidence 345556665544455666776665553222 24699999999999988888765 678999999999999887764 3
Q ss_pred cccCCCCcceEEEeccCCCch
Q 045407 160 KVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++ ...+..++.|.+.+.
T Consensus 132 r~g---~~~v~~~~~D~~~~~ 149 (283)
T PF01189_consen 132 RLG---VFNVIVINADARKLD 149 (283)
T ss_dssp HTT----SSEEEEESHHHHHH
T ss_pred hcC---CceEEEEeecccccc
Confidence 343 346788878877663
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.17 Score=50.91 Aligned_cols=61 Identities=25% Similarity=0.132 Sum_probs=47.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|.=-|.|-||..+++..+..+|+|+|-|++||+.|+++... -..|+.++++|..++.
T Consensus 22 g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-----~~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 22 GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-----FDDRFIFIHGNFSNLD 82 (310)
T ss_dssp -EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-----CCTTEEEEES-GGGHH
T ss_pred ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-----ccceEEEEeccHHHHH
Confidence 468899999999999999987778999999999999999887422 2359999999988876
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.47 Score=46.48 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=74.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe-ccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH-GNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~-gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+||+|..||-++--++++|.. .|+|||..-.-|.|-.++. .||..++ -|++.+...
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk-~VyavDVG~~Ql~~kLR~d---------~rV~~~E~tN~r~l~~~----------- 139 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAK-HVYAVDVGYGQLHWKLRND---------PRVIVLERTNVRYLTPE----------- 139 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCc-EEEEEEccCCccCHhHhcC---------CcEEEEecCChhhCCHH-----------
Confidence 36999999999999999999985 9999999999999988774 3655555 477766511
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+| .+.+|+|+|=- ||- .|...|-.+...|+ ++|.+
T Consensus 140 ------------------------------------~~-~~~~d~~v~Dv-SFI------SL~~iLp~l~~l~~-~~~~~ 174 (245)
T COG1189 140 ------------------------------------DF-TEKPDLIVIDV-SFI------SLKLILPALLLLLK-DGGDL 174 (245)
T ss_pred ------------------------------------Hc-ccCCCeEEEEe-ehh------hHHHHHHHHHHhcC-CCceE
Confidence 11 23678887754 544 67888888899998 88888
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|.=+-
T Consensus 175 v~LvK 179 (245)
T COG1189 175 VLLVK 179 (245)
T ss_pred EEEec
Confidence 87554
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.14 Score=49.07 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=52.9
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
=.+.+.|+...=..+.|+ +|||+|.|+|+-++.-++.|.. .|+..|++|..++-.+-|. +..+..|.+.+
T Consensus 64 G~~lAR~i~~~PetVrgk----rVLd~gagsgLvaIAaa~aGA~-~v~a~d~~P~~~~ai~lNa-----~angv~i~~~~ 133 (218)
T COG3897 64 GQVLARYIDDHPETVRGK----RVLDLGAGSGLVAIAAARAGAA-EVVAADIDPWLEQAIRLNA-----AANGVSILFTH 133 (218)
T ss_pred hHHHHHHHhcCccccccc----eeeecccccChHHHHHHHhhhH-HHHhcCCChHHHHHhhcch-----hhccceeEEee
Confidence 455666766655543333 5999999999999999999985 8999999986665444332 22346788888
Q ss_pred ccCC
Q 045407 174 GNVL 177 (382)
Q Consensus 174 gDV~ 177 (382)
.|..
T Consensus 134 ~d~~ 137 (218)
T COG3897 134 ADLI 137 (218)
T ss_pred cccc
Confidence 8864
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.57 Score=47.56 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=93.5
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC--CeEEEEeCCHHHHHHHHHhccccccC
Q 045407 86 LYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR--RTAVGLDLDLEALEWCMENNLNKVGA 163 (382)
Q Consensus 86 LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~--~tVvGVDLS~emL~~A~e~~~~kl~~ 163 (382)
.|..=.-.++...+.+--.++. .....+|||++.+.|-=|+.+|..... ..|+++|+|+.=|..-+++. ..++.
T Consensus 132 ~~~~G~~~vQd~sS~l~a~~L~---p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl-~RlG~ 207 (355)
T COG0144 132 EFAEGLIYVQDEASQLPALVLD---PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENL-KRLGV 207 (355)
T ss_pred hhhceEEEEcCHHHHHHHHHcC---CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHH-HHcCC
Confidence 5555444556666666665543 122257999999999999999998864 45799999999998877764 33433
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
..+.+++.|-+.+... .+... .-+-.-.|+++|....--..+|+--...
T Consensus 208 ---~nv~~~~~d~~~~~~~-----~~~~~-----------------------~fD~iLlDaPCSg~G~irr~Pd~~~~~~ 256 (355)
T COG0144 208 ---RNVIVVNKDARRLAEL-----LPGGE-----------------------KFDRILLDAPCSGTGVIRRDPDVKWRRT 256 (355)
T ss_pred ---CceEEEeccccccccc-----ccccC-----------------------cCcEEEECCCCCCCcccccCccccccCC
Confidence 3477888886654310 00000 0011123556665555444455544333
Q ss_pred chhcccCChhH-HHHHHHHHHhhccCCCcEEEEec
Q 045407 244 YSCCCLHKRAD-LVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 244 ~S~~yL~~r~d-L~~yFr~V~~~L~~pGGiFVfDl 277 (382)
-. -+..... -...++++++.|+ |||++|-..
T Consensus 257 ~~--~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYST 288 (355)
T COG0144 257 PE--DIAELAKLQKEILAAALKLLK-PGGVLVYST 288 (355)
T ss_pred HH--HHHHHHHHHHHHHHHHHHhcC-CCCEEEEEc
Confidence 22 1111222 2456889999998 999999853
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.081 Score=51.33 Aligned_cols=54 Identities=31% Similarity=0.506 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCCCcccccCCCccHhHHH--HHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 102 QKFFLIYVGGRQPLHLQEDFCGTALLSTE--WLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 102 ~~~f~~y~ggr~p~~LLEl~CGTG~LS~e--lar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
|+.|. +..+..|..|-|.+||.|-|.+- |+.+..=..|+|-|+|+++|++|++|
T Consensus 41 qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 41 QRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp HHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred HHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 44443 45567799999999999988654 45555445799999999999999987
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.38 Score=47.91 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=74.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..++|||||-|-++.-|.+.|.+ -+.++|+++.+++.=+.|.. .-.+++.|+.+......
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~-~~~a~Eid~~a~~ty~~n~~---------~~~~~~~di~~~~~~~~---------- 63 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFE-IVFANEIDPPAVATYKANFP---------HGDIILGDIKELDGEAL---------- 63 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCe-EEEEEecCHHHHHHHHHhCC---------CCceeechHhhcChhhc----------
Confidence 35789999999999999999985 79999999999988777652 13466778776652110
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCC-CccEEEEcc----chh-----cccCChhHHHHHHHHHHh
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLP-ARDIICAFN----YSC-----CCLHKRADLVLYFKHVLH 264 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fDiV~afn----~S~-----~yL~~r~dL~~yFr~V~~ 264 (382)
.. .+|++++-. +|. .+-..|..|...|.++..
T Consensus 64 --------------------------------------~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~ 105 (328)
T COG0270 64 --------------------------------------RKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIE 105 (328)
T ss_pred --------------------------------------cccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHH
Confidence 01 456666431 222 466778888899999999
Q ss_pred hccCCCcEEEEe
Q 045407 265 ALSKKGGIFVMD 276 (382)
Q Consensus 265 ~L~~pGGiFVfD 276 (382)
.|+ | -+|||.
T Consensus 106 ~~~-P-~~fv~E 115 (328)
T COG0270 106 QLR-P-KFFVLE 115 (328)
T ss_pred hhC-C-CEEEEe
Confidence 998 6 888885
|
|
| >PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.77 Score=40.00 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.8
Q ss_pred EecCHHHHHHHHHHcCCcEEEEEec
Q 045407 336 RLWSLPEIKDCLEEAGFRSVHFWLR 360 (382)
Q Consensus 336 Rlysl~EI~d~LeeAGF~~V~v~~r 360 (382)
+=|++++++.++++|||..++.|..
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d 118 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTD 118 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEEC
Confidence 5689999999999999999999963
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.3 Score=43.04 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+..+++.++.. .+..|+-||||-=.-.-++.. .. .+.-+++|..-+-..+++.+.+.+.....+..++..|++
T Consensus 68 r~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~- 142 (260)
T TIGR00027 68 RFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPW-PD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR- 142 (260)
T ss_pred HHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCC-CC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-
Confidence 5666666655532 245688999998766665532 22 245555554434334444444333333457889999988
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
..|... |. ...|... .-.++...-.+.||. .+++.+.
T Consensus 143 ~~w~~~-------------L~----------------------------~~gfd~~-~ptl~i~EGvl~YL~-~~~v~~l 179 (260)
T TIGR00027 143 QDWPAA-------------LA----------------------------AAGFDPT-APTAWLWEGLLMYLT-EEAVDAL 179 (260)
T ss_pred hhHHHH-------------HH----------------------------hCCCCCC-CCeeeeecchhhcCC-HHHHHHH
Confidence 665322 10 0112122 233444444667755 5789999
Q ss_pred HHHHHhhccCCCcEEEEeccCC
Q 045407 259 FKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~gg 280 (382)
|+.+.+... ||+.++||..+.
T Consensus 180 l~~i~~~~~-~gs~l~~d~~~~ 200 (260)
T TIGR00027 180 LAFIAELSA-PGSRLAFDYVRP 200 (260)
T ss_pred HHHHHHhCC-CCcEEEEEeccc
Confidence 999999887 899999998754
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.19 Score=49.45 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=47.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVL 177 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~ 177 (382)
.+|||-+.|-|-.+++-+++|.. +|+-|.-||..|++|.-|--+ .+-+ ..|.++.||.-
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~-~VitvEkdp~VLeLa~lNPwSr~l~~---~~i~iilGD~~ 195 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAI-HVITVEKDPNVLELAKLNPWSRELFE---IAIKIILGDAY 195 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCc-EEEEEeeCCCeEEeeccCCCCccccc---cccEEecccHH
Confidence 46999999999999999999963 899999999999998877443 1111 25888999853
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.7 Score=42.63 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=72.7
Q ss_pred CCCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCcc-HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 78 TDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTA-LLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 78 ~~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG-~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
++.|.--.-|||.---|..-+.-..-...++. -...+|| ++|-. +.|+.++-.+...+|+-||+|..+|+.-.+.
T Consensus 11 ~~RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gd--L~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~ 86 (243)
T PF01861_consen 11 KNRPEPDVELDQGYATPETTLRRAALMAERGD--LEGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRV 86 (243)
T ss_dssp TT-----GGGT---B-HHHHHHHHHHHHHTT---STT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHH
T ss_pred HcCCCCccccccccccHHHHHHHHHHHHhcCc--ccCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHH
Confidence 34554455566664444444333333333321 1123453 44443 4466666667778999999999999987765
Q ss_pred ccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCc
Q 045407 157 NLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPAR 236 (382)
Q Consensus 157 ~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 236 (382)
+.. .+..|..++.|++++.-.. + .++|
T Consensus 87 a~~-----~gl~i~~~~~DlR~~LP~~--------------~----------------------------------~~~f 113 (243)
T PF01861_consen 87 AEE-----EGLPIEAVHYDLRDPLPEE--------------L----------------------------------RGKF 113 (243)
T ss_dssp HHH-----HT--EEEE---TTS---TT--------------T----------------------------------SS-B
T ss_pred HHH-----cCCceEEEEecccccCCHH--------------H----------------------------------hcCC
Confidence 422 2346999999999987111 1 4678
Q ss_pred cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhh-Hhhhc
Q 045407 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKL-RLQRR 292 (382)
Q Consensus 237 DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl-~~~R~ 292 (382)
|++++== - -+.+.+.+.+.+..++|+.+||.-.|-+-...++..++ ..|+.
T Consensus 114 D~f~TDP--P---yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~ 165 (243)
T PF01861_consen 114 DVFFTDP--P---YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRF 165 (243)
T ss_dssp SEEEE--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHH
T ss_pred CEEEeCC--C---CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHH
Confidence 9876521 1 13478999999999999988876666554443333333 23444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.34 Score=51.22 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=45.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+++|||||.|-++.-|-+.|.+ .|.++|+++.+.+--+.|... . .....+.+|++++.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~-~v~a~Eid~~A~~TY~~N~~~----~--p~~~~~~~DI~~i~ 147 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQ-CVFTSEWNKHAVRTYKANWYC----D--PATHRFNEDIRDIT 147 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCE-EEEEEechHHHHHHHHHHcCC----C--CccceeccChhhCc
Confidence 46889999999999999999985 788999999998877766411 1 12345678888776
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.4 Score=49.27 Aligned_cols=125 Identities=15% Similarity=0.215 Sum_probs=76.2
Q ss_pred cCChhhHHHHH-HHHHHhhCC-CCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCc
Q 045407 92 QSPKGDISYLQ-KFFLIYVGG-RQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLN-KVGADGYS 167 (382)
Q Consensus 92 q~p~~Di~yl~-~~f~~y~gg-r~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~ 167 (382)
|.+.=|++-+. +++..+... ..+..+||..+|||.=+++|++- ..-..|+..|+|++++++.++|... .+.. .
T Consensus 26 ~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~ 102 (377)
T PF02005_consen 26 MEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---E 102 (377)
T ss_dssp GHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---C
T ss_pred hhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---c
Confidence 34556665544 122222111 23678999999999999999998 3335899999999999998887422 2211 2
Q ss_pred ceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc
Q 045407 168 RISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC 247 (382)
Q Consensus 168 RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~ 247 (382)
++.+.++|...+. . . ....||+|=- |.|+
T Consensus 103 ~~~v~~~DAn~ll-------------~---~---------------------------------~~~~fD~IDl--DPfG 131 (377)
T PF02005_consen 103 RIEVSNMDANVLL-------------Y---S---------------------------------RQERFDVIDL--DPFG 131 (377)
T ss_dssp CEEEEES-HHHHH-------------C---H---------------------------------STT-EEEEEE----SS
T ss_pred eEEEehhhHHHHh-------------h---h---------------------------------ccccCCEEEe--CCCC
Confidence 6777887743222 0 0 1456888743 4554
Q ss_pred ccCChhHHHHHHHHHHhhccCCCcEEEE---ec
Q 045407 248 CLHKRADLVLYFKHVLHALSKKGGIFVM---DL 277 (382)
Q Consensus 248 yL~~r~dL~~yFr~V~~~L~~pGGiFVf---Dl 277 (382)
.-.-++..+.++++ .||++-+ |+
T Consensus 132 ------Sp~pfldsA~~~v~-~gGll~vTaTD~ 157 (377)
T PF02005_consen 132 ------SPAPFLDSALQAVK-DGGLLCVTATDT 157 (377)
T ss_dssp --------HHHHHHHHHHEE-EEEEEEEEE--H
T ss_pred ------CccHhHHHHHHHhh-cCCEEEEecccc
Confidence 34778999999999 8999988 65
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.3 Score=43.10 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=70.3
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCH----HHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDL----EALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~----emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
..||=||..+|..-..++-- |+...|.+|..|+ ++|..|+++. +|-=+-+|.+.|..-+-
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----------NIiPIl~DAr~P~~Y~~----- 139 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----------NIIPILEDARHPEKYRM----- 139 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----------TEEEEES-TTSGGGGTT-----
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----------ceeeeeccCCChHHhhc-----
Confidence 36899999988766555542 3356899999999 7788888773 56656679998872100
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
+ .+.+|+|.+=- ..+.+..-...++...|+ +
T Consensus 140 -----------------------------------------l-v~~VDvI~~DV------aQp~Qa~I~~~Na~~fLk-~ 170 (229)
T PF01269_consen 140 -----------------------------------------L-VEMVDVIFQDV------AQPDQARIAALNARHFLK-P 170 (229)
T ss_dssp -----------------------------------------T-S--EEEEEEE-------SSTTHHHHHHHHHHHHEE-E
T ss_pred -----------------------------------------c-cccccEEEecC------CChHHHHHHHHHHHhhcc-C
Confidence 1 35789887643 456777888889999999 9
Q ss_pred CcEEEEecc
Q 045407 270 GGIFVMDLY 278 (382)
Q Consensus 270 GGiFVfDl~ 278 (382)
||.|++=+.
T Consensus 171 gG~~~i~iK 179 (229)
T PF01269_consen 171 GGHLIISIK 179 (229)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999998654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.67 Score=46.53 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
..||++|...+.-- .| .+|+|-|.|+|.+|..++|. +|..++.-.|+...--.-|++..... + -++.+.+.|
T Consensus 91 t~Dia~I~~~L~i~-PG---svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-g--i~~~vt~~h 163 (314)
T KOG2915|consen 91 TPDIAMILSMLEIR-PG---SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-G--IGDNVTVTH 163 (314)
T ss_pred cccHHHHHHHhcCC-CC---CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-C--CCcceEEEE
Confidence 35788887766532 22 36899999999999999986 57778999999987777777765431 1 235799999
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
.||+...
T Consensus 164 rDVc~~G 170 (314)
T KOG2915|consen 164 RDVCGSG 170 (314)
T ss_pred eecccCC
Confidence 9998766
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.5 Score=42.18 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+.++++.++... -..|.-||||==.=+-++- .+.+-+|.-||+ |+.+++=++ .+...++....++.++..|+++
T Consensus 79 r~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~-~~~~~~vfEvD~-Pevi~~K~~-~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 79 RYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLD-WPKGTRVFEVDL-PEVIEFKKK-LLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHhc-ccEEEEeccccccceeecC-CCCCCeEEECCC-cHHHHHHHH-HhhhcCCCCCceEEEEeccccc
Confidence 57777777666433 3457789999443322221 111235666666 556665444 4443444334489999999999
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
.+|... |. -.+|... .=..+..-=.+.||.. +.+.+.
T Consensus 155 ~dw~~~-------------L~----------------------------~~G~d~~-~pt~~iaEGLl~YL~~-~~v~~l 191 (297)
T COG3315 155 DDWPQA-------------LA----------------------------AAGFDRS-RPTLWIAEGLLMYLPE-EAVDRL 191 (297)
T ss_pred cchHHH-------------HH----------------------------hcCCCcC-CCeEEEeccccccCCH-HHHHHH
Confidence 988544 20 0112112 2234444457778664 788999
Q ss_pred HHHHHhhccCCCcEEEEecc-CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEe
Q 045407 259 FKHVLHALSKKGGIFVMDLY-GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRL 337 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~-gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rl 337 (382)
|..+..++. ||-.++++.. .+..... . .-...|.. ..+......+..|-.
T Consensus 192 l~~I~~~~~-~gS~~~~~~~~~~~~~~~-----~---~~~~~~~~--------------------~~~~~~~~~e~~~~~ 242 (297)
T COG3315 192 LSRIAALSA-PGSRVAFDYSLPGSLRDR-----L---RRPAARKT--------------------MRGEDLDRGELVYFG 242 (297)
T ss_pred HHHHHHhCC-CCceEEEeccccHHHHhc-----c---cchhhhhh--------------------ccccccccccceecc
Confidence 999999997 7887777763 1111100 0 00001110 000011123333444
Q ss_pred cCHHHHHHHHHHcCCcEEEE
Q 045407 338 WSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 338 ysl~EI~d~LeeAGF~~V~v 357 (382)
-...|+..+|.+.||..+..
T Consensus 243 ~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 243 DDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred CCHHHHHHHHHhcCEEEEec
Confidence 55789999999999998887
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.38 Score=45.47 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=47.5
Q ss_pred ccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 117 LQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
|.|+||--|.|.+.|+++|.--+|+++|+++..|+-|+++... .+ -..+|.+..+|=+++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~--l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YG--LEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT---TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cC--CcccEEEEECCcccc
Confidence 4699999999999999999877899999999999999997532 22 235899999995443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.12 Score=53.07 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=58.6
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc------cccCCC
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN------KVGADG 165 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~------kl~~d~ 165 (382)
.+-+++.++|+...-|-..|. .|.|.|-|||.+...-|.-|. -|+|-|||--|+.-.+.+..+ +-+..
T Consensus 190 TSmDAeLSli~AN~Amv~pGd---ivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~- 263 (421)
T KOG2671|consen 190 TSMDAELSLIMANQAMVKPGD---IVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS- 263 (421)
T ss_pred cccchhHHHHHhhhhccCCCC---EEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-
Confidence 345778899988877743343 689999999999999888884 699999999888743322111 11110
Q ss_pred CcceEEEeccCCCchh
Q 045407 166 YSRISLFHGNVLQPLE 181 (382)
Q Consensus 166 ~~RI~l~~gDV~~~~~ 181 (382)
.--+.++.+|...++|
T Consensus 264 ~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPPL 279 (421)
T ss_pred chhhheeeecccCcch
Confidence 0126778889888885
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.041 Score=53.34 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC-Cchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL-QPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~-~~~~~~~~~~~~~ 190 (382)
..|.+|||+|.|-|-++...+-.-. .|.+..||..|...-++++. +|+ ...|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~y----------------nVl~~~ew--------- 163 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNY----------------NVLTEIEW--------- 163 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCC----------------ceeeehhh---------
Confidence 4478999999999999999887664 58888899988876655542 221 1122
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+ + ..-++|+|.|+|-.=.|+ +-...++.+..+|.+.+
T Consensus 164 -------~-~-------------------------------t~~k~dli~clNlLDRc~----~p~kLL~Di~~vl~psn 200 (288)
T KOG3987|consen 164 -------L-Q-------------------------------TDVKLDLILCLNLLDRCF----DPFKLLEDIHLVLAPSN 200 (288)
T ss_pred -------h-h-------------------------------cCceeehHHHHHHHHhhc----ChHHHHHHHHHHhccCC
Confidence 0 0 023589999998554443 44667888889999558
Q ss_pred cEEEEec
Q 045407 271 GIFVMDL 277 (382)
Q Consensus 271 GiFVfDl 277 (382)
|..|+-+
T Consensus 201 grvivaL 207 (288)
T KOG3987|consen 201 GRVIVAL 207 (288)
T ss_pred CcEEEEE
Confidence 8888754
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.7 Score=41.73 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec-cCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG-NVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV~~~~ 180 (382)
..+|||+||-+|.-+.--.++- |..-|.||||=+ ...+. -+.++++ |+++|.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----------~~p~~-----Ga~~i~~~dvtdp~ 123 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----------IEPPE-----GATIIQGNDVTDPE 123 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----------ccCCC-----CcccccccccCCHH
Confidence 3579999999999986655544 888899999854 22111 2467777 899887
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.41 Score=47.00 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=47.5
Q ss_pred HHHHHHHhhCCC--CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 101 LQKFFLIYVGGR--QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 101 l~~~f~~y~ggr--~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|..||.. +.+. .|.+|+|+|||.==|+..|....+..+.+|.|||..+++....- ...++ .+......|+
T Consensus 92 Ld~fY~~-if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~-l~~l~----~~~~~~v~Dl 163 (251)
T PF07091_consen 92 LDEFYDE-IFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAF-LAVLG----VPHDARVRDL 163 (251)
T ss_dssp HHHHHHH-HCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHH-HHHTT-----CEEEEEE-T
T ss_pred HHHHHHH-HHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHH-HHhhC----CCcceeEeee
Confidence 4455543 2232 26899999999999999999888888999999999999987764 23332 2455556565
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.52 Score=43.81 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=68.2
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+++|+|.|.|.=++.||=.-|..+++-||-..-=.++-+.- ..+++- .++..+++.+.++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~-~~~L~L---~nv~v~~~R~E~~~--------------- 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEV-VRELGL---SNVEVINGRAEEPE--------------- 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHH-HHHHT----SSEEEEES-HHHTT---------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHH-HHHhCC---CCEEEEEeeecccc---------------
Confidence 69999999999999999999999999999998665544432 222322 36889998875522
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
....||+|+|=-.+ .+...+.-+...|+ +||.|++
T Consensus 112 ------------------------------------~~~~fd~v~aRAv~--------~l~~l~~~~~~~l~-~~G~~l~ 146 (184)
T PF02527_consen 112 ------------------------------------YRESFDVVTARAVA--------PLDKLLELARPLLK-PGGRLLA 146 (184)
T ss_dssp ------------------------------------TTT-EEEEEEESSS--------SHHHHHHHHGGGEE-EEEEEEE
T ss_pred ------------------------------------cCCCccEEEeehhc--------CHHHHHHHHHHhcC-CCCEEEE
Confidence 14679999986532 44556666777888 9999887
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.52 Score=48.10 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=30.3
Q ss_pred ccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHh
Q 045407 119 EDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 119 El~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
=+| |.|.+++.+|+ .| ++|+++|.|++-++.|++-
T Consensus 174 G~G-GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCc-HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 345 78999999999 66 6899999999999999875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.65 Score=46.64 Aligned_cols=59 Identities=20% Similarity=0.052 Sum_probs=37.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
...||+|||.-.+=--|+.+-+.-+++|.|+|+.+|++|+++.... ..-..+|.++++.
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N--~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN--PNLESRIELRKQK 162 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT---T-TTTEEEEE--
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc--cccccceEEEEcC
Confidence 4689999999865444443434468999999999999999975331 0123589998764
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.1 Score=44.53 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=78.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+..|+|+|||||.+|......-- ..+-+.|++.. . ....++++.-|.-.=++-.+++.-|. +-
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI----------~~i~~~~~~~~-----~-~~pe~qv~~nDLP~NDFNtlF~~L~~-~~ 126 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIV----------KHMSKRYESAG-----L-DPPEFSAFFSDLPSNDFNTLFQLLPP-LA 126 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHH----------HHHHHHhhhcC-----C-CCCcceEEecCCCCCCHHHHHhhchh-hh
Confidence 56799999999999888775421 11122222211 1 11258888877644444334333111 00
Q ss_pred hccccccccCccccchhh-hhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh--------------------
Q 045407 194 RNISLEECDNTLETSTIE-SAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-------------------- 252 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-------------------- 252 (382)
+.+.. ..+-+. .....+.++..++-.-.+-|+....+++++++ |+-||...
T Consensus 127 ~~~~~-------~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~-slHWLS~vP~~l~d~~s~~~Nkg~iyi~ 198 (386)
T PLN02668 127 NYGGS-------MEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAF-SLHWLSQVPESVTDKRSAAYNKGRVFIH 198 (386)
T ss_pred hhhcc-------hhhhccccCCCceEEEecCccccccccCCCceEEEEeec-cceecccCchhhccCCcccccCCceEec
Confidence 00000 000000 00012455666666677778888899999986 66676631
Q ss_pred ---------------hHHHHHHHHHHhhccCCCcEEEEeccCC
Q 045407 253 ---------------ADLVLYFKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 253 ---------------~dL~~yFr~V~~~L~~pGGiFVfDl~gg 280 (382)
.|+...|+.=++-|. |||.+|+=+.|-
T Consensus 199 ~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELv-pGG~mvl~~~Gr 240 (386)
T PLN02668 199 GASESTANAYKRQFQADLAGFLRARAQEMK-RGGAMFLVCLGR 240 (386)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEEecC
Confidence 134455666677898 999999988764
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.54 E-value=4.1 Score=40.05 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=72.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec---cCCCchhhhhcccchhhh
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG---NVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g---DV~~~~~~~~~~~~~~~~ 192 (382)
+||+.|-|-|.+.+.+-++-+. .=+-+.-.|+.|..-+...-. ...+|..+.| ||..
T Consensus 104 rvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~-------------- 163 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLN-------------- 163 (271)
T ss_pred eEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhc--------------
Confidence 6999999999998887777764 667789999999876665321 1224555554 3321
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
++..+.||-|.==.||=-| +|+..++.||.+.|+ |+|+
T Consensus 164 -------------------------------------~L~d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLk-P~gv 201 (271)
T KOG1709|consen 164 -------------------------------------TLPDKHFDGIYYDTYSELY----EDLRHFHQHVVRLLK-PEGV 201 (271)
T ss_pred -------------------------------------cccccCcceeEeechhhHH----HHHHHHHHHHhhhcC-CCce
Confidence 1234669999776666555 899999999999999 9999
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
|-+
T Consensus 202 ~Sy 204 (271)
T KOG1709|consen 202 FSY 204 (271)
T ss_pred EEE
Confidence 876
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.2 Score=44.78 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=73.8
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...+.+|.|+||.+|..|..+...- ++.-+++..... ......++++.-|.-.=++..+++.=|.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~i--------------i~~i~~~~~~~~-~~~~~e~~v~~nDlP~NDFn~lF~~l~~ 78 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNI--------------IDAIRERCRSSN-NQPPPEFQVFFNDLPSNDFNTLFKSLPS 78 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHH--------------HHHHHHHHHCTT--SS--EEEEEEEE-TTS-HHHHHHCHHH
T ss_pred CCCceEEEecCCCCCccHHHHHHHH--------------HHHHHHHhhhhc-CCCCCeEEEEeCCCCCccHHHHHHhChh
Confidence 3446789999999999999988653 333333322110 0112468999988654444444333111
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC-------------------
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK------------------- 251 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~------------------- 251 (382)
.. .. ....+.+.++..++..-.+-|+....|++++++ |+.||..
T Consensus 79 ~~---------------~~-~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~-alHWLS~vP~~l~~~~~~~~Nkg~i~ 141 (334)
T PF03492_consen 79 FQ---------------QS-LKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSY-ALHWLSQVPEELVDKSSPAWNKGNIY 141 (334)
T ss_dssp HH---------------HH-HHHTTSEEEEEEES-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSS
T ss_pred hh---------------hc-cCCCceEEEEecCchhhhccCCCCceEEEEEec-hhhhcccCCcccccccccccccCcEE
Confidence 10 00 001234445555555566667778899999986 5555542
Q ss_pred -----------------hhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 252 -----------------RADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 252 -----------------r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
..|+...|+.=++-|+ |||++|+=+.|
T Consensus 142 ~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv-~GG~mvl~~~g 185 (334)
T PF03492_consen 142 ISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV-PGGRMVLTFLG 185 (334)
T ss_dssp SSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHHhhheec-cCcEEEEEEee
Confidence 1456666666778898 99999997765
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=87.31 E-value=3.6 Score=33.70 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=34.0
Q ss_pred CCccHhHHHHHH---hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTEWLR---SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~elar---~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||.|.++..+++ .+. ..|+.||.+++..+.+++.. +.++.||..++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~~-----------~~~i~gd~~~~~ 53 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG-IDVVVIDRDPERVEELREEG-----------VEVIYGDATDPE 53 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT-----------SEEEES-TTSHH
T ss_pred EcCCHHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHhcc-----------cccccccchhhh
Confidence 777777766554 222 36999999999988887762 568999998887
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.19 E-value=4.7 Score=33.36 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.3
Q ss_pred CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 123 GTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 123 GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
|.|.+++.+|+.-. ++|+++|.+++-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh
Confidence 56899999998876 8999999999999999875
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.87 E-value=2.4 Score=46.10 Aligned_cols=130 Identities=17% Similarity=0.116 Sum_probs=83.5
Q ss_pred CchHHHHHHhhcCChhhHHHHHHHHHHhh-CCCC--CCcccccCCCccHhHHHHHHh----CCCCeEEEEeCCHHHHHHH
Q 045407 81 PSKFLLYQQSVQSPKGDISYLQKFFLIYV-GGRQ--PLHLQEDFCGTALLSTEWLRS----DSRRTAVGLDLDLEALEWC 153 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di~yl~~~f~~y~-ggr~--p~~LLEl~CGTG~LS~elar~----g~~~tVvGVDLS~emL~~A 153 (382)
|=|+.+||++|+. .++--+ .++. +.+|+=+|.|-|=|...-++. .-+-.+++|.-.|.++-.-
T Consensus 342 ~VKY~~Yq~Ai~~----------AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL 411 (649)
T KOG0822|consen 342 PVKYDQYQQAILK----------ALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL 411 (649)
T ss_pred chHHHHHHHHHHH----------HHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence 4588899888532 221111 2222 677888999999876554432 1234689999999887766
Q ss_pred HHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCC
Q 045407 154 MENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSL 233 (382)
Q Consensus 154 ~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (382)
...+..- -..||.++..|||.+.. +.
T Consensus 412 ~~~n~~~----W~~~Vtii~~DMR~w~a--------------------------------------------------p~ 437 (649)
T KOG0822|consen 412 QNRNFEC----WDNRVTIISSDMRKWNA--------------------------------------------------PR 437 (649)
T ss_pred hhhchhh----hcCeeEEEeccccccCC--------------------------------------------------ch
Confidence 5555431 23589999999998871 02
Q ss_pred CCccEEEE-ccchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 234 PARDIICA-FNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 234 ~~fDiV~a-fn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.+.||+|+ +.-||++ .+-=-.++..|-..|+ |.||+|=--|
T Consensus 438 eq~DI~VSELLGSFGD---NELSPECLDG~q~fLk-pdgIsIP~sY 479 (649)
T KOG0822|consen 438 EQADIIVSELLGSFGD---NELSPECLDGAQKFLK-PDGISIPSSY 479 (649)
T ss_pred hhccchHHHhhccccC---ccCCHHHHHHHHhhcC-CCceEccchh
Confidence 56788876 3334443 1222457778888898 8899886443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.75 E-value=2.9 Score=41.94 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=37.5
Q ss_pred cccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 116 HLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 116 ~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
+++=.|||+ |++++.+++.-.-.+|+.+|++++=|+.|++..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 688899997 999999999887779999999999999999863
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.79 Score=42.81 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCM 154 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~ 154 (382)
..++.|+|||+|.++..+++.+ ..|+.-|+++......+
T Consensus 21 ~~~~vepF~G~g~V~~~~~~~~--~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 21 HKTYVEPFAGGGSVFLNLKQPG--KRVIINDINPDLINFWK 59 (260)
T ss_dssp -SEEEETT-TTSHHHHCC---S--SEEEEEES-HHHHHHHH
T ss_pred CCEEEEEecchhHHHHHhcccc--cceeeeechHHHHHHHH
Confidence 4578999999999998887766 47999999999888766
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.7 Score=43.93 Aligned_cols=152 Identities=19% Similarity=0.215 Sum_probs=98.4
Q ss_pred CCCCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCC-CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 77 STDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQP-LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 77 ~~~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p-~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
.+|.|-..+.|||..-.|..-++-+.- ||-.|..- ..|+=+| ---+.|+.++-.|..-+|.-||+|+-.+..-.+
T Consensus 118 aK~RP~p~~~yDQgfvTpEttv~Rv~l---m~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k 193 (354)
T COG1568 118 AKDRPEPLHQYDQGFVTPETTVSRVAL---MYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEK 193 (354)
T ss_pred HhcCCCcchhcccccccccceeeeeee---eccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHH
Confidence 478888899999999999888865433 44444322 2355555 445666777777766789999999999987665
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
-+. .-++.+|..+.-|+++|. |+++ ..+
T Consensus 194 ~ae----e~g~~~ie~~~~Dlr~pl--------pe~~----------------------------------------~~k 221 (354)
T COG1568 194 VAE----ELGYNNIEAFVFDLRNPL--------PEDL----------------------------------------KRK 221 (354)
T ss_pred HHH----HhCccchhheeehhcccC--------hHHH----------------------------------------Hhh
Confidence 432 224556889999999997 2332 355
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHh
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRL 289 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~ 289 (382)
||+++.== -.+-..|.+++.+=-.+|+++|+-=.|-+-.-.++..+++.
T Consensus 222 FDvfiTDP-----peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~e 270 (354)
T COG1568 222 FDVFITDP-----PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWRE 270 (354)
T ss_pred CCeeecCc-----hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHH
Confidence 77654211 01234666777777788887765555555444455555554
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=85.10 E-value=4.9 Score=39.34 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=29.6
Q ss_pred cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCC
Q 045407 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 237 DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg 280 (382)
.|.+...|.=.| +.-...|.+++..|. |||+.|||=|+-
T Consensus 177 ~IAll~lD~DlY----esT~~aLe~lyprl~-~GGiIi~DDY~~ 215 (248)
T PF05711_consen 177 RIALLHLDCDLY----ESTKDALEFLYPRLS-PGGIIIFDDYGH 215 (248)
T ss_dssp -EEEEEE---SH----HHHHHHHHHHGGGEE-EEEEEEESSTTT
T ss_pred cEEEEEEeccch----HHHHHHHHHHHhhcC-CCeEEEEeCCCC
Confidence 567777777667 677889999999999 999999987764
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component | Back alignment and domain information |
|---|
Probab=84.92 E-value=3.8 Score=35.05 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhh
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKL 287 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl 287 (382)
.+.+++..-++.+.+.+....|++|| |++||+++....
T Consensus 39 ~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~ 77 (116)
T TIGR00824 39 ENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAA 77 (116)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 45678888888888888645787777 999999876543
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.49 E-value=13 Score=33.54 Aligned_cols=57 Identities=7% Similarity=-0.126 Sum_probs=35.8
Q ss_pred cccccCCCccH----hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL----LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~----LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|+ +|. ++..|+++|+ +|++++-+++.+....+... . ...++.++.+|+.++.
T Consensus 8 ~ilItGa-sg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~----~-~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 8 VALVTGA-ARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVE----A-AGGKARARQVDVRDRA 68 (251)
T ss_pred EEEEcCC-CCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCeEEEEECCCCCHH
Confidence 4554454 444 4455677775 79999999776654333221 1 1235889999998876
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.09 E-value=6.3 Score=36.97 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=30.8
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+++|.+++-+....+... .. ..++.++..|++++.
T Consensus 25 la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~-~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 25 IAQAFARAGA--NVAVASRSQEKVDAAVAQLQ----QA-GPEGLGVSADVRDYA 71 (264)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----Hh-CCceEEEECCCCCHH
Confidence 3445666774 69999999887764433221 11 236788899998766
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=83.98 E-value=6.5 Score=39.30 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=35.6
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||..|||+ |.++..+|+.-...+|+++|.++++++.+++.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 3678889999 99999999886533699999999999998875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.97 E-value=1.1 Score=47.86 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=38.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhc
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~ 157 (382)
..++++||..|+||+-+++||+.-+. ..|++.|+++.+++..++|.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv 154 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNV 154 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhh
Confidence 44778999999999999999986332 36899999999999888874
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=82.79 E-value=2.3 Score=43.09 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=50.3
Q ss_pred CcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|.=-|.|-+|..++...+. .+++|+|-|+.+|+.|++.... -..|+.++|++..++.
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-----~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-----FDGRVTLVHGNFANLA 86 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-----cCCcEEEEeCcHHHHH
Confidence 56788888999999999999863 4599999999999999998532 1258999999876665
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.47 E-value=9.2 Score=39.38 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=36.2
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
..+|=+|+|+ |+++..||+.---.+|+.+|+++.-|+.|++
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3688889995 8999999998777799999999999999998
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.35 E-value=8.1 Score=38.35 Aligned_cols=139 Identities=16% Similarity=0.227 Sum_probs=85.1
Q ss_pred CchHHHHHHhhcCChhhH--HH----HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC------C---eEEEEeC
Q 045407 81 PSKFLLYQQSVQSPKGDI--SY----LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR------R---TAVGLDL 145 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di--~y----l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~------~---tVvGVDL 145 (382)
-+|-.+|=++......-+ .| +.+-|..+ .| ..++.||+.-+|.-|.-|.|+-+. . .+|+|||
T Consensus 6 kDKRDiYYRlAKe~gwRARSAFKLlqideef~i~-~g--v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDL 82 (294)
T KOG1099|consen 6 KDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIF-EG--VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDL 82 (294)
T ss_pred chhhHHHHHHHHhccchHHhHHHHhhhhhhhhHH-hh--hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEec
Confidence 356667776665555554 22 12222221 12 346789999999988887776442 1 1899999
Q ss_pred CHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCC
Q 045407 146 DLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDN 225 (382)
Q Consensus 146 S~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (382)
-+ +..| .-|.-+|+|+..+.-+. .+++-
T Consensus 83 Q~----------MaPI-----~GV~qlq~DIT~~stae-------~Ii~h------------------------------ 110 (294)
T KOG1099|consen 83 QP----------MAPI-----EGVIQLQGDITSASTAE-------AIIEH------------------------------ 110 (294)
T ss_pred cc----------CCcc-----CceEEeecccCCHhHHH-------HHHHH------------------------------
Confidence 76 1112 23677899999887322 22221
Q ss_pred cCccCCCCCCccEEEEcc--chhcccCCh------hHHHHHHHHHHhhccCCCcEEEEeccCCC
Q 045407 226 CSKQKSSLPARDIICAFN--YSCCCLHKR------ADLVLYFKHVLHALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 226 ~~~~~~~~~~fDiV~afn--~S~~yL~~r------~dL~~yFr~V~~~L~~pGGiFVfDl~gg~ 281 (382)
|...+-|+|||=- ++-+ ||+- +-|+..|.-+...|+ |||.||--++.|.
T Consensus 111 -----fggekAdlVvcDGAPDvTG-lHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 111 -----FGGEKADLVVCDGAPDVTG-LHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAKIFRGR 167 (294)
T ss_pred -----hCCCCccEEEeCCCCCccc-cccHHHHHHHHHHHHHHHHHhheec-CCCeeehhhhccC
Confidence 3345678888743 1211 3333 345677888888998 9999999888554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=17 Score=33.84 Aligned_cols=54 Identities=7% Similarity=-0.011 Sum_probs=35.1
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.|+++| .++..|++.|+ +|+.+|.+++-++...+.. ..++.++++|+.+..
T Consensus 9 vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~ 65 (261)
T PRK08265 9 AIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL--------GERARFIATDITDDA 65 (261)
T ss_pred EEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh--------CCeeEEEEecCCCHH
Confidence 444454333 24556677785 7999999987655433321 136889999998876
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=14 Score=41.90 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=43.4
Q ss_pred CcccccCCCccHhHHHHHHh----CCCCeEEEEeCCHHHHHHHHHh--ccccccCC----CCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS----DSRRTAVGLDLDLEALEWCMEN--NLNKVGAD----GYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~----g~~~tVvGVDLS~emL~~A~e~--~~~kl~~d----~~~RI~l~~gDV~~~~ 180 (382)
.+|+=+|+|-|=|-.+.++. |-+.+|++|.=.+.+....+.+ +.. ...+ -+.+|.+++.|||.+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~e-eW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDP-EWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccc-ccccccccCCCeEEEEeCcccccc
Confidence 56888999999887665544 4456899999996643333333 222 1111 1357999999999986
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 6e-12
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 5/124 (4%)
Query: 238 IICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTS--SEQKLRLQRRFAN 295
++ F+ S L +L L + GG+ V++ + ++ + +
Sbjct: 104 VVSMFS-SVGYLKTTEELGAAVASFAEHL-EPGGVVVVEPWWFPETFADGWVSADVVRRD 161
Query: 296 FTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHA-FSYNWRLWSLPEIKDCLEEAGFRS 354
V + TR+ +HF + K +RH + L+ E + AG R
Sbjct: 162 GRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRV 221
Query: 355 VHFW 358
+
Sbjct: 222 EYLE 225
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 7/125 (5%)
Query: 238 IICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFA--- 294
+ C F+ S L +A+L + + G+ V++ + + +
Sbjct: 114 VTCMFS-SIGHLAGQAELDAALERFAAHV-LPDGVVVVEPWWFPENFTPGYVAAGTVEAG 171
Query: 295 NFTYVWEQAEFDIIERKTRISLHFHLQKEQKKL-RHAFSYNWRLWSLPEIKDCLEEAGFR 353
T TRI +H+ + + + H S+ L++ + + AG
Sbjct: 172 GTTVTRVS-HSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLS 230
Query: 354 SVHFW 358
Sbjct: 231 VEFMP 235
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 7e-11
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANF 296
I + S L AD+ F L GG + D++ +++ F
Sbjct: 99 AITILCD-SLNYLQTEADVKQTFDSAARLL-TDGGKLLFDVHS------PYKMETLFNGK 150
Query: 297 TYVWEQAEFDII--------ERKTRISLHFHLQKEQKKLRHA-FSYNWRLWSLPEIKDCL 347
TY + I L F ++ E + +++ R + + L
Sbjct: 151 TYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWL 210
Query: 348 EEAGFRSVHFW 358
EAGFR
Sbjct: 211 REAGFRVCAVT 221
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANF 296
D+I S + DL YFK V + L K+GG+F+ D+ +L + N
Sbjct: 103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHL-KEGGVFIFDINS------YYKLSQVLGNN 155
Query: 297 TYVWEQAEFDIIER------KTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350
+ ++ E + + F ++ + R + R + +I+ L+
Sbjct: 156 DFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHG 215
Query: 351 GFRSVHFW 358
+
Sbjct: 216 QLNILDKV 223
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 7e-09
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Query: 238 IICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL---YGGTSSEQKLRLQRRFA 294
+ F+ DL F V AL K GG+F+ D + G + +++
Sbjct: 109 VTMFFS--TIMYFDEEDLRKLFSKVAEAL-KPGGVFITDFPCWFYGGRDGPVVWNEQKGE 165
Query: 295 NFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRH-AFSYNWRLWSLPEIKDCLEEAGFR 353
+ + E + +K R + + +++ +++ E++ L E F
Sbjct: 166 EKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFE 224
Query: 354 SVHFW 358
V +
Sbjct: 225 KVKIY 229
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 10/125 (8%)
Query: 238 IICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFA--- 294
++ + AD + V L + GG F++ L ++E + +++
Sbjct: 154 VVISSG--SINELDEADRRGLYASVREHL-EPGGKFLLSLAMSEAAESEPLERKQELPGR 210
Query: 295 -NFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353
YV E I++H + + ++ RL + ++ L +GF
Sbjct: 211 SGRRYVLHV-RHLPAEEIQEITIHPADETTDPFVV--CTHRRRLLAPDQVVRELVRSGFD 267
Query: 354 SVHFW 358
+
Sbjct: 268 VIAQT 272
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 38/269 (14%), Positives = 78/269 (28%), Gaps = 65/269 (24%)
Query: 167 SRISLFHGNVLQPLEAKLVR----YEPQKLVRNI-SLEECDNTLETST------------ 209
+ ++L E V + Q + ++I S EE D+ + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 210 -----------IESAVQDN--FTASSGDNCSKQKSS-----LPARDIICAFNYSCCCLH- 250
+E ++ N F S +Q S + RD + N +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 251 KRADLVLYFKHVLHALSKKGGIFV--MDLYGGT-------SSEQKLRLQRRFANFTYVWE 301
R L + L L + + + G+ ++Q + + W
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGV---LGSGKTWVALDVCLSYKVQCKMDFKIF-W- 186
Query: 302 QAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW--RLWSLPEIKDCLEEAGFRSVHFWL 359
++ + ++ LQ KL + NW R IK +
Sbjct: 187 ---LNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 360 REM-PDA----REMRNTEGLGGFS-RCKV 382
+ + ++N + F+ CK+
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 47/336 (13%), Positives = 100/336 (29%), Gaps = 70/336 (20%)
Query: 69 RDKNDTNPSTDMPSKFLLYQQSVQSPKG-DISYLQKFFLIYVGGRQ-----------PLH 116
R K T+ + + + ++ L Y+ R P
Sbjct: 273 RFKQVTD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 117 LQEDFCGTAL-----LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL 171
L ++ W + + ++ L LE K+ + R+S+
Sbjct: 330 L--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKM----FDRLSV 380
Query: 172 FHGNV------LQPLEAKLVRYEPQKLV---RNISLEECDNTLETSTIESAVQDNFTASS 222
F + L + +++ + +V SL E T +I S +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKL 439
Query: 223 GDNCSKQKSSLPARDIICAF-----------NYSCCCL--H----KRADLVLYFKHV--- 262
+ + +S + +I F Y + H + + + F+ V
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 263 LHALSKK---GGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFH 319
L +K ++ Q+L+ + Y+ + ER L F
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDNDPKY--ERLVNAILDFL 552
Query: 320 LQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSV 355
+ E+ + ++ R+ + E + EEA + V
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEA-HKQV 587
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 19/150 (12%)
Query: 238 IIC---AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD-------LYGGTSSEQKL 287
+IC +F + +++ L K++ + + GG+ V+D L G + K
Sbjct: 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMV-RPGGLLVIDHRNYDYILSTGCAPPGKN 192
Query: 288 RLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQ---KEQKKLRHAFSYNWRLWSLPEIK 344
+ + + + ++ F ++ L
Sbjct: 193 IYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFT 252
Query: 345 DCLEEA--GFRSVHF---WLREMPDAREMR 369
+ ++EA G + P +
Sbjct: 253 ELVQEAFGGRCQHSVLGDFKPYRPGQAYVP 282
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.93 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.92 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.92 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.91 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.91 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.88 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.88 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.86 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.83 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.81 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.78 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.77 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.77 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.76 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.76 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.74 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.74 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.74 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.74 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.73 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.73 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.72 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.72 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.71 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.7 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.7 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.7 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.7 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.7 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.69 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.69 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.68 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.68 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.68 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.68 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.67 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.67 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.67 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.67 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.66 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.65 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.64 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.64 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.64 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.64 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.64 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.63 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.62 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.61 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.61 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.6 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.6 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.6 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.59 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.58 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.58 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.57 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.57 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.57 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.56 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.56 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.56 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.55 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.55 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.55 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.54 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.54 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.54 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.54 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.52 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.52 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.52 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.52 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.52 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.51 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.51 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.51 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.5 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.5 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.5 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.49 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.49 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.49 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.49 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.49 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.49 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.48 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.48 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.48 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.47 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.46 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.46 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.46 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.45 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.45 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.45 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.44 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.44 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.44 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.43 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.43 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.43 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.43 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.43 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.42 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.42 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.41 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.41 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.41 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.41 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.41 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.4 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.4 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.4 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.4 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.39 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.39 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.38 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.38 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.38 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.38 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.38 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.38 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.38 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.37 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.37 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.37 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.36 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.36 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.36 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.36 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.36 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.35 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.35 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.35 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.35 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.34 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.34 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.34 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.34 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.33 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.33 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.33 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.33 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.33 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.33 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.32 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.32 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.32 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.32 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.32 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.31 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.31 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.31 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.31 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.3 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.3 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.3 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.3 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.29 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.29 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.29 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.29 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.28 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.28 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.28 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.28 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.27 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.27 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.26 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.25 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.25 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.25 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.25 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.24 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.24 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.24 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.24 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.24 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.23 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.23 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.22 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.21 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.2 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.2 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.2 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.2 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.2 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.2 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.19 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.19 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.19 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.18 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.17 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.16 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.15 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.15 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.15 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.15 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.14 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.13 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.13 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.11 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.1 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.1 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.09 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.08 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.07 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.07 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.06 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.05 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.05 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.02 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.02 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.0 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.0 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.98 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.96 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.96 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.94 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.94 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.93 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.92 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.92 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.92 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.89 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.89 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.88 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.88 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.88 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.88 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.86 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.86 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.86 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.85 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.81 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.8 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.8 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.79 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.76 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.73 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.72 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.68 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.67 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.67 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.64 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.46 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.44 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.44 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.44 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.44 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.43 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.42 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.38 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.3 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.28 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.26 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.21 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.19 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.09 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.07 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.03 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.03 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.01 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.98 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.91 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.85 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.84 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.84 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.81 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.6 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.34 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.16 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.15 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.08 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.0 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.97 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.92 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.83 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.81 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.78 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.76 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.3 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.29 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.23 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.04 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.0 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.82 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 95.69 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.58 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.49 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.42 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.05 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.03 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.59 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.39 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 93.39 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 91.94 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 91.37 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 91.28 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 89.31 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 89.28 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 89.25 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.04 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 88.52 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 88.39 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 87.98 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 87.69 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 87.41 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.32 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 87.15 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 87.11 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.95 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 86.84 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 86.27 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 86.21 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 86.06 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 85.56 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 85.42 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 85.38 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 85.11 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 85.09 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 85.08 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 85.03 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 84.6 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 84.32 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 84.19 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 84.14 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 84.07 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 83.93 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 83.9 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 83.71 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 83.61 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.45 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 83.39 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 83.39 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 83.32 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 83.3 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 82.95 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 82.88 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 82.82 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 82.66 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 82.57 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 82.57 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 82.54 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 82.52 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 82.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 81.79 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 81.75 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 81.7 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 81.69 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 81.66 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 81.53 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 81.47 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 81.33 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 81.22 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 80.93 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 80.7 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 80.66 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 80.64 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 80.57 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 80.53 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 80.43 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 80.42 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 80.39 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 80.34 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 80.33 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 80.33 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 80.32 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 80.29 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 80.2 |
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=198.49 Aligned_cols=208 Identities=17% Similarity=0.148 Sum_probs=154.8
Q ss_pred hHHHHHHhhcC--C--hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcc
Q 045407 83 KFLLYQQSVQS--P--KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNL 158 (382)
Q Consensus 83 ~~~LYd~~vq~--p--~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~ 158 (382)
...+|+..+.. + ...+.++.+++..+.. .+.+|||+|||||.++..|++.+. +|+|+|+|++||+.|+++.
T Consensus 18 ~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~- 92 (263)
T 3pfg_A 18 IAELYDLVHQGKGKDYHREAADLAALVRRHSP--KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRN- 92 (263)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCC--CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC-
Confidence 45678887752 2 2334667777766432 246899999999999999999985 6999999999999999985
Q ss_pred ccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccE
Q 045407 159 NKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDI 238 (382)
Q Consensus 159 ~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDi 238 (382)
.++.++++|+.+++ + ...||+
T Consensus 93 --------~~~~~~~~d~~~~~-----------------~----------------------------------~~~fD~ 113 (263)
T 3pfg_A 93 --------PDAVLHHGDMRDFS-----------------L----------------------------------GRRFSA 113 (263)
T ss_dssp --------TTSEEEECCTTTCC-----------------C----------------------------------SCCEEE
T ss_pred --------CCCEEEECChHHCC-----------------c----------------------------------cCCcCE
Confidence 26899999998766 1 467999
Q ss_pred EEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchh-hhhHh----hhccCCeEEEEeecccccccceEE
Q 045407 239 ICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSE-QKLRL----QRRFANFTYVWEQAEFDIIERKTR 313 (382)
Q Consensus 239 V~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e-~kl~~----~R~~~~~tyvWeq~~fD~~~~~~r 313 (382)
|+|...++.|+.+.+++..+|+.++++|+ |||+||++.+...... ..... ......+..+|.... ......
T Consensus 114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 189 (263)
T 3pfg_A 114 VTCMFSSIGHLAGQAELDAALERFAAHVL-PDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSR---EGEATR 189 (263)
T ss_dssp EEECTTGGGGSCHHHHHHHHHHHHHHTEE-EEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEE---ETTEEE
T ss_pred EEEcCchhhhcCCHHHHHHHHHHHHHhcC-CCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEe---cCcEEE
Confidence 99998899999999999999999999999 9999999865322111 00000 011123556676422 345677
Q ss_pred EEEEEEeecccceeeee-eeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 314 ISLHFHLQKEQKKLRHA-FSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 314 i~L~F~~~~~~~~lr~~-fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
+.++|++.++.+.+++. ..+++|+|+++||+++|++|||+.+.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~ 235 (263)
T 3pfg_A 190 IEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMP 235 (263)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred EEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEee
Confidence 78888876655344433 3366899999999999999999999885
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=190.31 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=154.4
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC
Q 045407 84 FLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA 163 (382)
Q Consensus 84 ~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~ 163 (382)
...|+..+....+. .++. ++..++.. ..+|||+|||||.++..+++. .+|+|+|+|+.||+.|+++...
T Consensus 8 a~~yd~~~~~~~~~-~~~~-~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~---- 76 (243)
T 3d2l_A 8 AYVYDELMQDVPYP-EWVA-WVLEQVEP--GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAME---- 76 (243)
T ss_dssp THHHHHHTTTCCHH-HHHH-HHHHHSCT--TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHH----
T ss_pred HHHHHHhhhcccHH-HHHH-HHHHHcCC--CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhh----
Confidence 46788887655443 2333 33333321 357999999999999999988 4799999999999999998532
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
...++.++++|+.+++ + ..+||+|++.+
T Consensus 77 -~~~~~~~~~~d~~~~~-----------------~----------------------------------~~~fD~v~~~~ 104 (243)
T 3d2l_A 77 -TNRHVDFWVQDMRELE-----------------L----------------------------------PEPVDAITILC 104 (243)
T ss_dssp -TTCCCEEEECCGGGCC-----------------C----------------------------------SSCEEEEEECT
T ss_pred -cCCceEEEEcChhhcC-----------------C----------------------------------CCCcCEEEEeC
Confidence 1247899999987654 1 35699999988
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHh---hhccCCeEEEEeecccccccceEEEEEEEEe
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRL---QRRFANFTYVWEQAEFDIIERKTRISLHFHL 320 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~---~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~ 320 (382)
+++.|+.+.+++...|+.++++|+ |||+||+++.+.......+.. ....+++.++|.. .++.....+...+++++
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (243)
T 3d2l_A 105 DSLNYLQTEADVKQTFDSAARLLT-DGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFA-DPGEEPLSVVHELTFFI 182 (243)
T ss_dssp TGGGGCCSHHHHHHHHHHHHHHEE-EEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEE-EECSSTTEEEEEEEEEE
T ss_pred CchhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEe-ecCccccEEEEEEEEEE
Confidence 899999999999999999999999 999999998753221110000 0011456778886 45555667777888877
Q ss_pred ecccceeeee-eeeeEEecCHHHHHHHHHHcCCcEEEEEe
Q 045407 321 QKEQKKLRHA-FSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 321 ~~~~~~lr~~-fsy~~Rlysl~EI~d~LeeAGF~~V~v~~ 359 (382)
..+.+.+.+. ..++.|.|+++||+.+|++|||+.+.++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 222 (243)
T 3d2l_A 183 EGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTG 222 (243)
T ss_dssp ECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEec
Confidence 6544344332 24677999999999999999999999974
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=187.39 Aligned_cols=211 Identities=16% Similarity=0.150 Sum_probs=154.7
Q ss_pred HHHHHHhhc-CChhh--HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 84 FLLYQQSVQ-SPKGD--ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 84 ~~LYd~~vq-~p~~D--i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
...|+..+. ...++ +.++.+++..+ +..+.+|||+|||||.++..|++.+. +|+|+|+|+.||+.|+++...
T Consensus 7 a~~yd~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~- 81 (246)
T 1y8c_A 7 AHIYDKLIRADVDYKKWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRS- 81 (246)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHH-
T ss_pred HHHHHHHccccccHHHHHHHHHHHHHHh--CCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhh-
Confidence 356877765 33333 35666666543 22456899999999999999999985 799999999999999998532
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
. ..++.++++|+.+++ + ..+||+|+
T Consensus 82 ---~-~~~~~~~~~d~~~~~-----------------~----------------------------------~~~fD~v~ 106 (246)
T 1y8c_A 82 ---Q-GLKPRLACQDISNLN-----------------I----------------------------------NRKFDLIT 106 (246)
T ss_dssp ---T-TCCCEEECCCGGGCC-----------------C----------------------------------SCCEEEEE
T ss_pred ---c-CCCeEEEecccccCC-----------------c----------------------------------cCCceEEE
Confidence 1 127899999987654 1 25799999
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHh---hhccCCeEEEEeecccccccceEEEEEE
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRL---QRRFANFTYVWEQAEFDIIERKTRISLH 317 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~---~R~~~~~tyvWeq~~fD~~~~~~ri~L~ 317 (382)
+.++++.|+.+.+++...|+.++++|+ |||+||+++.+.......+.. .....++.++|... .....+...++
T Consensus 107 ~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 182 (246)
T 1y8c_A 107 CCLDSTNYIIDSDDLKKYFKAVSNHLK-EGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQ---FEDDLVSMYIS 182 (246)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHTTEE-EEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEE---EETTEEEEEEE
T ss_pred EcCccccccCCHHHHHHHHHHHHHhcC-CCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecc---cCCceEEEEEE
Confidence 988799999888999999999999999 999999998753221110000 00124567788764 33455667777
Q ss_pred EEeecccceeeee-eeeeEEecCHHHHHHHHHHcCCcEEEEEe
Q 045407 318 FHLQKEQKKLRHA-FSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 318 F~~~~~~~~lr~~-fsy~~Rlysl~EI~d~LeeAGF~~V~v~~ 359 (382)
|+...+. .+++. ..+++|.|++++++++|++|||+.++++.
T Consensus 183 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 224 (246)
T 1y8c_A 183 FFVRDGE-FYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD 224 (246)
T ss_dssp EEEECSS-SEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEecCC-cccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence 7765443 44333 34678999999999999999999999974
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-23 Score=181.59 Aligned_cols=207 Identities=16% Similarity=0.141 Sum_probs=146.9
Q ss_pred HHHHHHhhc----CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 84 FLLYQQSVQ----SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 84 ~~LYd~~vq----~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
-..|+..+. .......++..++..+. ..+.+|||+|||||.++..|++.++ +|+|+|+|+.||+.|+++.
T Consensus 9 a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-- 82 (239)
T 3bxo_A 9 ADVYDLFYLGRGKDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-- 82 (239)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC--
T ss_pred HHHHHHHhhccHhhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC--
Confidence 456666653 23344467777776654 3356899999999999999999986 7999999999999999874
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.++.++++|+.+++ + ..+||+|
T Consensus 83 -------~~~~~~~~d~~~~~-----------------~----------------------------------~~~~D~v 104 (239)
T 3bxo_A 83 -------PDATLHQGDMRDFR-----------------L----------------------------------GRKFSAV 104 (239)
T ss_dssp -------TTCEEEECCTTTCC-----------------C----------------------------------SSCEEEE
T ss_pred -------CCCEEEECCHHHcc-----------------c----------------------------------CCCCcEE
Confidence 25889999997665 1 3579999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhh---ccCC--eEEEEeecccccccceEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQR---RFAN--FTYVWEQAEFDIIERKTRI 314 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R---~~~~--~tyvWeq~~fD~~~~~~ri 314 (382)
+|.+.++.|+.+.+++..+|++++++|+ |||+||++.+............. ..++ +.+++ .+++......+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 180 (239)
T 3bxo_A 105 VSMFSSVGYLKTTEELGAAVASFAEHLE-PGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVS---HSVREGNATRM 180 (239)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHTEE-EEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEE---EEEEETTEEEE
T ss_pred EEcCchHhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEeccCcccccccceEeeEEecCCceEEEEE---EEecCCCEEEE
Confidence 9988899999999999999999999999 99999997653221100000000 0011 12211 13444556677
Q ss_pred EEEEEeecccceeeeee-eeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 315 SLHFHLQKEQKKLRHAF-SYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 315 ~L~F~~~~~~~~lr~~f-sy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
.+++.+....+..++.. .++.|+||++||+.+|++|||+.+.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~ 225 (239)
T 3bxo_A 181 EVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLE 225 (239)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred EEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeE
Confidence 77777655332343333 356799999999999999999766654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=187.24 Aligned_cols=214 Identities=20% Similarity=0.302 Sum_probs=143.4
Q ss_pred chHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc
Q 045407 82 SKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV 161 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl 161 (382)
.|..+|+...+....++.++.+++... ..+.+.+|||+|||||.++..|++.|. +|+|+|+|++||+.|+++...
T Consensus 11 ~yd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~-- 85 (252)
T 1wzn_A 11 YYDTIYRRRIERVKAEIDFVEEIFKED-AKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKE-- 85 (252)
T ss_dssp GHHHHTHHHHHTHHHHHHHHHHHHHHT-CSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHh-cccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHh--
Confidence 345567666566677789999988764 334457899999999999999999985 799999999999999998532
Q ss_pred cCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE
Q 045407 162 GADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA 241 (382)
Q Consensus 162 ~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a 241 (382)
.+.++.++++|+.+++ + ..+||+|++
T Consensus 86 ---~~~~v~~~~~d~~~~~-----------------~----------------------------------~~~fD~v~~ 111 (252)
T 1wzn_A 86 ---RNLKIEFLQGDVLEIA-----------------F----------------------------------KNEFDAVTM 111 (252)
T ss_dssp ---TTCCCEEEESCGGGCC-----------------C----------------------------------CSCEEEEEE
T ss_pred ---cCCceEEEECChhhcc-----------------c----------------------------------CCCccEEEE
Confidence 1237999999997655 1 356999999
Q ss_pred ccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhh---hHhhhccCC--eEEEEeecccccccceEEEEE
Q 045407 242 FNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQK---LRLQRRFAN--FTYVWEQAEFDIIERKTRISL 316 (382)
Q Consensus 242 fn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~k---l~~~R~~~~--~tyvWeq~~fD~~~~~~ri~L 316 (382)
.+.++.|+ ..+++..+|+.++++|+ |||+||+|+.+....... .+....... +...|. .+++......+..
T Consensus 112 ~~~~~~~~-~~~~~~~~l~~~~~~L~-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 187 (252)
T 1wzn_A 112 FFSTIMYF-DEEDLRKLFSKVAEALK-PGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWR--EVEPAVQKLRFKR 187 (252)
T ss_dssp CSSGGGGS-CHHHHHHHHHHHHHHEE-EEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEE--EEETTTTEEEEEE
T ss_pred cCCchhcC-CHHHHHHHHHHHHHHcC-CCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeec--ccccccceeehee
Confidence 87777776 46789999999999999 999999997531000000 000000000 111233 2223223222222
Q ss_pred EEE-eecccceeeee-eeeeEEecCHHHHHHHHHHcCCcEEEEEec
Q 045407 317 HFH-LQKEQKKLRHA-FSYNWRLWSLPEIKDCLEEAGFRSVHFWLR 360 (382)
Q Consensus 317 ~F~-~~~~~~~lr~~-fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r 360 (382)
... +..+. .+++. ...+.|+|+++|++ +|++|||+.+++|..
T Consensus 188 ~~~~~~~~g-~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~ 231 (252)
T 1wzn_A 188 LVQILRPNG-EVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGN 231 (252)
T ss_dssp EEEEECTTS-CEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEET
T ss_pred eeeecccCC-ceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecc
Confidence 111 22222 33322 23467999999998 999999999999853
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=184.33 Aligned_cols=206 Identities=17% Similarity=0.101 Sum_probs=131.2
Q ss_pred HHHHHhhcC--ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc
Q 045407 85 LLYQQSVQS--PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG 162 (382)
Q Consensus 85 ~LYd~~vq~--p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~ 162 (382)
.+|+..+.+ +...+..+...+ . ..+.+|||+|||||.++..|++.|. +|+|||+|+.||+.|+++...
T Consensus 57 ~~y~~~~~~~~~~~~~~~~~~~~----~-~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~--- 126 (299)
T 3g2m_A 57 DTYRDLIQDADGTSEAREFATRT----G-PVSGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAE--- 126 (299)
T ss_dssp ---------CCCHHHHHHHHHHH----C-CCCSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHT---
T ss_pred HHHHHHhcccCccHHHHHHHHhh----C-CCCCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhh---
Confidence 467777653 333333333332 2 2244799999999999999999985 699999999999999998532
Q ss_pred CCCC---cceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 163 ADGY---SRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 163 ~d~~---~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.+. .+|.++++|+.+++ + ..+||+|
T Consensus 127 -~~~~~~~~v~~~~~d~~~~~-----------------~----------------------------------~~~fD~v 154 (299)
T 3g2m_A 127 -APADVRDRCTLVQGDMSAFA-----------------L----------------------------------DKRFGTV 154 (299)
T ss_dssp -SCHHHHTTEEEEECBTTBCC-----------------C----------------------------------SCCEEEE
T ss_pred -cccccccceEEEeCchhcCC-----------------c----------------------------------CCCcCEE
Confidence 110 47999999998765 1 4679999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhh----hccCCeEEE-EeecccccccceEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQ----RRFANFTYV-WEQAEFDIIERKTRI 314 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~----R~~~~~tyv-Weq~~fD~~~~~~ri 314 (382)
++.+.++.|+ +++++..+|+.++++|+ |||+||+.+++........... ....+..+. |. .+.+ .....
T Consensus 155 ~~~~~~~~~~-~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~--~~~~~ 228 (299)
T 3g2m_A 155 VISSGSINEL-DEADRRGLYASVREHLE-PGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHV--RHLP--AEEIQ 228 (299)
T ss_dssp EECHHHHTTS-CHHHHHHHHHHHHHHEE-EEEEEEEEEECCHHHHSCCCCC-------------CCE--EEEE--EEEEE
T ss_pred EECCcccccC-CHHHHHHHHHHHHHHcC-CCcEEEEEeecCccccccchhccceeecCCCcEEEEEE--EEec--cccEE
Confidence 9888788775 45789999999999999 9999999887643321100000 000122222 32 1222 12233
Q ss_pred EEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 315 SLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 315 ~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
.++|+.......-...+.+++|+|+++||+.+|++|||+.+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~ 272 (299)
T 3g2m_A 229 EITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQT 272 (299)
T ss_dssp EEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEE
Confidence 45554332211112346678899999999999999999999874
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=181.02 Aligned_cols=226 Identities=11% Similarity=0.139 Sum_probs=143.5
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC
Q 045407 85 LLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD 164 (382)
Q Consensus 85 ~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d 164 (382)
.+|+..+.........+..++...+....+.+|||+|||||.++..|++.|. +|+|+|+|+.||++|+++........
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~ 106 (293)
T 3thr_A 29 RVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEP 106 (293)
T ss_dssp HHHHHHHTCCSCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhccccc
Confidence 3788777555555544444444333323356899999999999999999986 79999999999999998753211111
Q ss_pred CCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccc
Q 045407 165 GYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNY 244 (382)
Q Consensus 165 ~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~ 244 (382)
...++.+.++|+.+++. ++ +...+||+|+|...
T Consensus 107 ~~~~~~~~~~d~~~~~~-------------~~----------------------------------~~~~~fD~V~~~g~ 139 (293)
T 3thr_A 107 AFDKWVIEEANWLTLDK-------------DV----------------------------------PAGDGFDAVICLGN 139 (293)
T ss_dssp HHHTCEEEECCGGGHHH-------------HS----------------------------------CCTTCEEEEEECTT
T ss_pred ccceeeEeecChhhCcc-------------cc----------------------------------ccCCCeEEEEEcCh
Confidence 22468889999876541 00 12467999999866
Q ss_pred hhcccCC----hhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhcc-CCeEEEEee--------cc--ccccc
Q 045407 245 SCCCLHK----RADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRF-ANFTYVWEQ--------AE--FDIIE 309 (382)
Q Consensus 245 S~~yL~~----r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~-~~~tyvWeq--------~~--fD~~~ 309 (382)
++.|+.+ .++...+|++++++|+ |||+|++.+.+.... ...... +....+|.. .. .+...
T Consensus 140 ~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 214 (293)
T 3thr_A 140 SFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDHRNYDYI----LSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKA 214 (293)
T ss_dssp CGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEEECHHHH----HHHTCCCSSCCSSBCCCSCEEEEEEEEEETTEE
T ss_pred HHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEeCCHHHH----hhcCCCCCccceeeccccccccccceEEEcCCc
Confidence 8999888 7889999999999999 999999987642111 111111 111111110 01 11112
Q ss_pred ceEEEEEEEEeecccc---eeeeeeeeeEEecCHHHHHHHHHHc--CCcEEEEEeccCchh
Q 045407 310 RKTRISLHFHLQKEQK---KLRHAFSYNWRLWSLPEIKDCLEEA--GFRSVHFWLREMPDA 365 (382)
Q Consensus 310 ~~~ri~L~F~~~~~~~---~lr~~fsy~~Rlysl~EI~d~LeeA--GF~~V~v~~r~~~~~ 365 (382)
...++..+|+++.... .....|....+-++..+++++|++| ||..|.+|. ++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~l~~af~GF~~v~~~g-df~~~ 274 (293)
T 3thr_A 215 HMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLG-DFKPY 274 (293)
T ss_dssp EEEEEEEEEEEC------CCEEEEEEEEECCCCHHHHHHHHHHTTTTCEEEEEEE-TTEEC
T ss_pred cEEEEEEEEecCCccccCCCCcceeeeecCHHHHHHHHHHHHHHhcCCceEEEec-ccccC
Confidence 2345566665543321 1112223233444678999999999 999999995 55443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-22 Score=184.78 Aligned_cols=191 Identities=13% Similarity=0.189 Sum_probs=125.9
Q ss_pred ChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC--CCCeEEEEeCCHHHHHHHHHhccccccCCCCcce
Q 045407 94 PKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD--SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRI 169 (382)
Q Consensus 94 p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g--~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI 169 (382)
|-|+. ..+..+..+|+. ...+|||+|||||.++..|+++. +..+|+|||+|++||+.|+++... . ....+|
T Consensus 51 P~Y~~~~~~i~~l~~~~~~--~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~-~--~~~~~v 125 (261)
T 4gek_A 51 PGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-Y--KAPTPV 125 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCC--TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT-S--CCSSCE
T ss_pred CCHHHHHHHHHHHHHHhCC--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh-h--ccCceE
Confidence 54543 455555565542 12479999999999999999874 345899999999999999998532 1 123589
Q ss_pred EEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc
Q 045407 170 SLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL 249 (382)
Q Consensus 170 ~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL 249 (382)
.++++|+++++ .+.+|+|++.+ ++.|+
T Consensus 126 ~~~~~D~~~~~----------------------------------------------------~~~~d~v~~~~-~l~~~ 152 (261)
T 4gek_A 126 DVIEGDIRDIA----------------------------------------------------IENASMVVLNF-TLQFL 152 (261)
T ss_dssp EEEESCTTTCC----------------------------------------------------CCSEEEEEEES-CGGGS
T ss_pred EEeeccccccc----------------------------------------------------ccccccceeee-eeeec
Confidence 99999998776 46799998865 66665
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEE-eccCCCch-hhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeeccccee
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSS-EQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKL 327 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~-e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~l 327 (382)
. .++...+|++++++|+ |||+||+ |....... ........ ..++ ...+ .|.+..- . ..
T Consensus 153 ~-~~~~~~~l~~i~~~Lk-pGG~lii~e~~~~~~~~~~~~~~~~-~~~~--~~~~-g~s~~ei----------~----~~ 212 (261)
T 4gek_A 153 E-PSERQALLDKIYQGLN-PGGALVLSEKFSFEDAKVGELLFNM-HHDF--KRAN-GYSELEI----------S----QK 212 (261)
T ss_dssp C-HHHHHHHHHHHHHHEE-EEEEEEEEEEBCCSSHHHHHHHHHH-HHHH--HHHT-TGGGSTT----------H----HH
T ss_pred C-chhHhHHHHHHHHHcC-CCcEEEEEeccCCCCHHHHHHHHHH-HHHH--HHHc-CCCHHHH----------H----HH
Confidence 4 4677889999999999 9999998 66543221 11110000 0000 0000 0100000 0 00
Q ss_pred eeeeeeeEEecCHHHHHHHHHHcCCcEEEEEeccC
Q 045407 328 RHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREM 362 (382)
Q Consensus 328 r~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~ 362 (382)
+...+..++.+|+++++.+|++|||+.|.+|++.+
T Consensus 213 ~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~ 247 (261)
T 4gek_A 213 RSMLENVMLTDSVETHKARLHKAGFEHSELWFQCF 247 (261)
T ss_dssp HHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEET
T ss_pred HhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEec
Confidence 11122335789999999999999999999998755
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=165.86 Aligned_cols=218 Identities=13% Similarity=0.072 Sum_probs=130.4
Q ss_pred chHHHHHHhhcCChh-hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 82 SKFLLYQQSVQSPKG-DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~-Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
..+..|...-....+ ........+...++...+.+|||+|||||.++..+++.++. +|+|+|+|+.||+.|+++..
T Consensus 12 ~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~-- 88 (253)
T 3g5l_A 12 HFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT-- 88 (253)
T ss_dssp -------------CHHHHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC--
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc--
Confidence 344555554333222 22222233333344344678999999999999999999874 89999999999999999852
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
..++.++++|+.+++ +....||+|+
T Consensus 89 -----~~~~~~~~~d~~~~~--------------------------------------------------~~~~~fD~v~ 113 (253)
T 3g5l_A 89 -----SPVVCYEQKAIEDIA--------------------------------------------------IEPDAYNVVL 113 (253)
T ss_dssp -----CTTEEEEECCGGGCC--------------------------------------------------CCTTCEEEEE
T ss_pred -----cCCeEEEEcchhhCC--------------------------------------------------CCCCCeEEEE
Confidence 247999999987655 1246799999
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhh---hHhhhccCCeEEEEeecccccccceEEEEEE
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQK---LRLQRRFANFTYVWEQAEFDIIERKTRISLH 317 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~k---l~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~ 317 (382)
|.+ ++.++ .++..+|+.++++|+ |||+||+.+......... ...........+.|.. .++...+ ...
T Consensus 114 ~~~-~l~~~---~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~ 183 (253)
T 3g5l_A 114 SSL-ALHYI---ASFDDICKKVYINLK-SSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDR-YFNESMR----TSH 183 (253)
T ss_dssp EES-CGGGC---SCHHHHHHHHHHHEE-EEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECC-TTCCCEE----EEE
T ss_pred Ech-hhhhh---hhHHHHHHHHHHHcC-CCcEEEEEeCCCccccCccccceeccCCceEEEEecc-ccccceE----EEe
Confidence 987 77776 457889999999999 999999976531110000 0000000112333443 2221111 011
Q ss_pred EEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEeccCchhhhhccccCcCcccc
Q 045407 318 FHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDAREMRNTEGLGGFSR 379 (382)
Q Consensus 318 F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~~~~~~~~~~~~~~~ 379 (382)
| . . .......+|+.+++.+|++|||+.+.+. ...|...... ..++....|
T Consensus 184 ~-~--~-------~~~~~~~~t~~~~~~~l~~aGF~~~~~~-e~~~~~~~~~-~~~~~~~~~ 233 (253)
T 3g5l_A 184 F-L--G-------EDVQKYHRTVTTYIQTLLKNGFQINSVI-EPEPAPELKD-LPEMQDEYR 233 (253)
T ss_dssp E-T--T-------EEEEEECCCHHHHHHHHHHTTEEEEEEE-CCCCCGGGSS-CGGGGGGGT
T ss_pred e-c--c-------ccCccEecCHHHHHHHHHHcCCeeeeee-cCCCchhhcc-ChhHHHhhc
Confidence 1 0 0 0112233499999999999999999986 4555544444 555554444
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-20 Score=163.49 Aligned_cols=170 Identities=19% Similarity=0.181 Sum_probs=119.5
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..+++..+..+|+|+|+|+.|++.|+++... ..++.++++|+.+++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~----------- 105 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG------NLKVKYIEADYSKYD----------- 105 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS------CTTEEEEESCTTTCC-----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc------CCCEEEEeCchhccC-----------
Confidence 345789999999999999999997667899999999999999998522 128999999998776
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+ ...||+|++.+ ++.++ ...+...+|++++++|+ |||
T Consensus 106 ------~----------------------------------~~~fD~v~~~~-~l~~~-~~~~~~~~l~~~~~~Lk-pgG 142 (234)
T 3dtn_A 106 ------F----------------------------------EEKYDMVVSAL-SIHHL-EDEDKKELYKRSYSILK-ESG 142 (234)
T ss_dssp ------C----------------------------------CSCEEEEEEES-CGGGS-CHHHHHHHHHHHHHHEE-EEE
T ss_pred ------C----------------------------------CCCceEEEEeC-ccccC-CHHHHHHHHHHHHHhcC-CCc
Confidence 1 26799999985 77776 44566789999999999 999
Q ss_pred EEEE-eccCCCchh-hhhHhhhccCCeEEEEeec----ccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHH
Q 045407 272 IFVM-DLYGGTSSE-QKLRLQRRFANFTYVWEQA----EFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKD 345 (382)
Q Consensus 272 iFVf-Dl~gg~s~e-~kl~~~R~~~~~tyvWeq~----~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d 345 (382)
+|++ |...+.... ... ... .|... .+.... + .. .+.+ . .+.+.++++++.+
T Consensus 143 ~l~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~--~----------~~-~~~~-~-~~~~~~~~~~~~~ 199 (234)
T 3dtn_A 143 IFINADLVHGETAFIENL-NKT-------IWRQYVENSGLTEEE--I----------AA-GYER-S-KLDKDIEMNQQLN 199 (234)
T ss_dssp EEEEEEECBCSSHHHHHH-HHH-------HHHHHHHTSSCCHHH--H----------HT-TC------CCCCCBHHHHHH
T ss_pred EEEEEEecCCCChhhhhH-HHH-------HHHHHHHhcCCCHHH--H----------HH-HHHh-c-ccccccCHHHHHH
Confidence 9998 544332221 111 000 12110 010000 0 00 0111 0 2347899999999
Q ss_pred HHHHcCCcEEEEEeccCch
Q 045407 346 CLEEAGFRSVHFWLREMPD 364 (382)
Q Consensus 346 ~LeeAGF~~V~v~~r~~~~ 364 (382)
+|++|||+.|++|++.++-
T Consensus 200 ll~~aGF~~v~~~~~~~~~ 218 (234)
T 3dtn_A 200 WLKEAGFRDVSCIYKYYQF 218 (234)
T ss_dssp HHHHTTCEEEEEEEEETTE
T ss_pred HHHHcCCCceeeeeeecce
Confidence 9999999999998876543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=150.91 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
....++..+.... +.+|||+|||||.++..|++.|. +|+|||+|++||+.|+++. .++.++++|
T Consensus 29 ~~~~~l~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d 92 (203)
T 3h2b_A 29 PDRVLIEPWATGV-----DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQTH---------PSVTFHHGT 92 (203)
T ss_dssp TTHHHHHHHHHHC-----CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHHC---------TTSEEECCC
T ss_pred HHHHHHHHHhccC-----CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHhC---------CCCeEEeCc
Confidence 3445666666542 34699999999999999999975 6999999999999999983 368999999
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL 255 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL 255 (382)
+.+++ + ...+||+|++.+ ++.++. .+++
T Consensus 93 ~~~~~-----------------~---------------------------------~~~~fD~v~~~~-~l~~~~-~~~~ 120 (203)
T 3h2b_A 93 ITDLS-----------------D---------------------------------SPKRWAGLLAWY-SLIHMG-PGEL 120 (203)
T ss_dssp GGGGG-----------------G---------------------------------SCCCEEEEEEES-SSTTCC-TTTH
T ss_pred ccccc-----------------c---------------------------------CCCCeEEEEehh-hHhcCC-HHHH
Confidence 87765 1 246799999975 666654 4688
Q ss_pred HHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW 335 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~ 335 (382)
..+++.++++|+ |||+|++-...+... . .+.. .....
T Consensus 121 ~~~l~~~~~~L~-pgG~l~i~~~~~~~~-------------~-~~~~----------------------------~~~~~ 157 (203)
T 3h2b_A 121 PDALVALRMAVE-DGGGLLMSFFSGPSL-------------E-PMYH----------------------------PVATA 157 (203)
T ss_dssp HHHHHHHHHTEE-EEEEEEEEEECCSSC-------------E-EECC----------------------------SSSCE
T ss_pred HHHHHHHHHHcC-CCcEEEEEEccCCch-------------h-hhhc----------------------------hhhhh
Confidence 999999999999 999999966542110 0 0000 01134
Q ss_pred EecCHHHHHHHHHHcCCcEEEEEec
Q 045407 336 RLWSLPEIKDCLEEAGFRSVHFWLR 360 (382)
Q Consensus 336 Rlysl~EI~d~LeeAGF~~V~v~~r 360 (382)
+.|+..+++.+|+++||+.+.+...
T Consensus 158 ~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 158 YRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp EECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCcEEEEEec
Confidence 6899999999999999999998643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-18 Score=148.29 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=118.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-ccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-VGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++.+. +|+|+|+|+.|++.|+++.... +......++.++++|+.+++
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------ 96 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS------------ 96 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC------------
T ss_pred CCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC------------
Confidence 45799999999999999999974 7999999999999999985331 11111237899999987665
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+...+||+|++. .++.++.+..+...+++.+++.|+ |||+
T Consensus 97 --------------------------------------~~~~~~D~v~~~-~~l~~~~~~~~~~~~l~~~~~~L~-pgG~ 136 (235)
T 3sm3_A 97 --------------------------------------FHDSSFDFAVMQ-AFLTSVPDPKERSRIIKEVFRVLK-PGAY 136 (235)
T ss_dssp --------------------------------------SCTTCEEEEEEE-SCGGGCCCHHHHHHHHHHHHHHEE-EEEE
T ss_pred --------------------------------------CCCCceeEEEEc-chhhcCCCHHHHHHHHHHHHHHcC-CCeE
Confidence 124679999987 488888888888899999999999 9999
Q ss_pred EEEeccCCCchhhhhHh--hhc----cCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHH
Q 045407 273 FVMDLYGGTSSEQKLRL--QRR----FANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDC 346 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~--~R~----~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~ 346 (382)
+++-.++.......+.. ... ...-.+... ... .. ...+..+.|+.++++++
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~--~~~~~~~~~~~~~l~~l 193 (235)
T 3sm3_A 137 LYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLAR--------------------DPE-TG--ETEFIAHHFTEKELVFL 193 (235)
T ss_dssp EEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEE--------------------CTT-TC--CEEEEEECBCHHHHHHH
T ss_pred EEEEECCcchhHHHHHHHhhhhccchhhhcceEec--------------------ccc-cC--CcceeeEeCCHHHHHHH
Confidence 99844322211111100 000 011111111 010 00 01345689999999999
Q ss_pred HHHcCCcEEEEEec
Q 045407 347 LEEAGFRSVHFWLR 360 (382)
Q Consensus 347 LeeAGF~~V~v~~r 360 (382)
|++|||+.+.+...
T Consensus 194 l~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 194 LTDCRFEIDYFRVK 207 (235)
T ss_dssp HHTTTEEEEEEEEE
T ss_pred HHHcCCEEEEEEec
Confidence 99999999998643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=154.35 Aligned_cols=207 Identities=17% Similarity=0.134 Sum_probs=118.4
Q ss_pred CCchHHHHHHhhcCChh-hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcc
Q 045407 80 MPSKFLLYQQSVQSPKG-DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNL 158 (382)
Q Consensus 80 ~p~~~~LYd~~vq~p~~-Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~ 158 (382)
.|.....|+..+....+ ...+....+...+....+.+|||+|||||.++..+++.+. .+|+|+|+|+.||+.|+++..
T Consensus 9 ~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~ 87 (243)
T 3bkw_A 9 QPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGP 87 (243)
T ss_dssp ----------------CGGGCTTHHHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSC
T ss_pred CHHHHHHHHHhccCCccHHHHHhHHHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcc
Confidence 34455667766654443 1112222333333333456899999999999999999975 279999999999999998852
Q ss_pred ccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccE
Q 045407 159 NKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDI 238 (382)
Q Consensus 159 ~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDi 238 (382)
. .++.++++|+.+++ +...+||+
T Consensus 88 ~-------~~~~~~~~d~~~~~--------------------------------------------------~~~~~fD~ 110 (243)
T 3bkw_A 88 D-------TGITYERADLDKLH--------------------------------------------------LPQDSFDL 110 (243)
T ss_dssp S-------SSEEEEECCGGGCC--------------------------------------------------CCTTCEEE
T ss_pred c-------CCceEEEcChhhcc--------------------------------------------------CCCCCceE
Confidence 1 36899999986654 12467999
Q ss_pred EEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEE
Q 045407 239 ICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHF 318 (382)
Q Consensus 239 V~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F 318 (382)
|++.+ ++.++. ++..+|+.++++|+ |||+||+...+.... ....+. |... ..... ...+.-
T Consensus 111 v~~~~-~l~~~~---~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~------~~~~~~----~~~~---~~~~~-~~~~~~ 171 (243)
T 3bkw_A 111 AYSSL-ALHYVE---DVARLFRTVHQALS-PGGHFVFSTEHPIYM------APARPG----WAID---AEGRR-TWPIDR 171 (243)
T ss_dssp EEEES-CGGGCS---CHHHHHHHHHHHEE-EEEEEEEEEECHHHH------CCSSCS----CEEC---TTSCE-EEEECC
T ss_pred EEEec-cccccc---hHHHHHHHHHHhcC-cCcEEEEEeCCcccc------cCcCcc----eeec---CCCce-EEeecc
Confidence 99876 666664 56789999999999 999999976431100 000011 1110 00000 000000
Q ss_pred Eeecccceeeeee--eeeEEecCHHHHHHHHHHcCCcEEEEEeccCchh
Q 045407 319 HLQKEQKKLRHAF--SYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDA 365 (382)
Q Consensus 319 ~~~~~~~~lr~~f--sy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~ 365 (382)
.+..+. .....+ ..+.+.|++.+++.+|++|||+.+.+. ...|..
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~-~~~~~~ 218 (243)
T 3bkw_A 172 YLVEGP-RKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVE-EFCPTD 218 (243)
T ss_dssp TTCCEE-ECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEE-ECCCCH
T ss_pred cccccc-eeeeeccCceEEEeccHHHHHHHHHHcCCEeeeec-cCCCch
Confidence 000000 000000 123456899999999999999999886 344443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=150.51 Aligned_cols=175 Identities=16% Similarity=0.174 Sum_probs=114.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.++ +|+|+|+|++|++.|+++... ...++.++++|+.+++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~------------- 98 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKS-----RESNVEFIVGDARKLS------------- 98 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCCCEEEECCTTSCC-------------
T ss_pred CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHh-----cCCCceEEECchhcCC-------------
Confidence 56899999999999999999987 799999999999999998532 1147999999987754
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ...+||+|++.. ++. ++...+....+++++++|+ |||+|
T Consensus 99 ----~---------------------------------~~~~~D~v~~~~-~~~-~~~~~~~~~~l~~~~~~L~-~gG~l 138 (227)
T 1ve3_A 99 ----F---------------------------------EDKTFDYVIFID-SIV-HFEPLELNQVFKEVRRVLK-PSGKF 138 (227)
T ss_dssp ----S---------------------------------CTTCEEEEEEES-CGG-GCCHHHHHHHHHHHHHHEE-EEEEE
T ss_pred ----C---------------------------------CCCcEEEEEEcC-chH-hCCHHHHHHHHHHHHHHcC-CCcEE
Confidence 1 245799999874 332 3455788999999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++-..+.......+.... ..... .|.. .+.+......+.+.|. ++. ..|..+.+.|+. ++.++|++|||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~w~~-~~~~~l~~~GF~ 208 (227)
T 1ve3_A 139 IMYFTDLRELLPRLKESL-VVGQK-YWIS-KVIPDQEERTVVIEFK--SEQ----DSFRVRFNVWGK-TGVELLAKLYFT 208 (227)
T ss_dssp EEEEECHHHHGGGCCC-----------CC-EEEEETTTTEEEEEC-----------CCEEEEECCCH-HHHHHHHTTTEE
T ss_pred EEEecChHHHHHHHHhhh-hcccc-eeec-ccccCccccEEEEEec--cch----hhheeehhhhch-HHHHHHHHHhhh
Confidence 985443111111000000 00111 1221 1111111122233332 121 235667789997 789999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
.|.+.
T Consensus 209 ~v~~~ 213 (227)
T 1ve3_A 209 KEAEE 213 (227)
T ss_dssp EEEEE
T ss_pred HHHHH
Confidence 99875
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=151.25 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=118.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++.+. .+|+|+|+|+.|++.|+++.... + ...++.++++|+.+++
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~~------------- 127 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNM-K--RRFKVFFRAQDSYGRH------------- 127 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTS-C--CSSEEEEEESCTTTSC-------------
T ss_pred CCeEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhc-C--CCccEEEEECCccccc-------------
Confidence 46799999999999999999874 48999999999999999985321 1 1147999999997765
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc-CChhHHHHHHHHHHhhccCCCcE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL-HKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL-~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ .....||+|++.+ ++.|+ ...+++..+|+.+++.|+ |||+
T Consensus 128 ----~--------------------------------~~~~~fD~v~~~~-~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~ 169 (298)
T 1ri5_A 128 ----M--------------------------------DLGKEFDVISSQF-SFHYAFSTSESLDIAQRNIARHLR-PGGY 169 (298)
T ss_dssp ----C--------------------------------CCSSCEEEEEEES-CGGGGGSSHHHHHHHHHHHHHTEE-EEEE
T ss_pred ----c--------------------------------CCCCCcCEEEECc-hhhhhcCCHHHHHHHHHHHHHhcC-CCCE
Confidence 1 0145799999876 44443 567889999999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccc---cceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHH
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDII---ERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEE 349 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~---~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Lee 349 (382)
||+...+.......+. ...+.+..|. . .++.. ........+|.+.... .....+++++++|+.+|++
T Consensus 170 l~~~~~~~~~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~~~~g~~~~~~l~~~~------~~~~~~~~~~~~l~~ll~~ 239 (298)
T 1ri5_A 170 FIMTVPSRDVILERYK-QGRMSNDFYK-I--ELEKMEDVPMESVREYRFTLLDSV------NNCIEYFVDFTRMVDGFKR 239 (298)
T ss_dssp EEEEEECHHHHHHHHH-HTCCBCSSEE-E--ECCCCSSCCTTTCCEEEEEETTSC------SSEEEECCCHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHc-cCccCCeeEE-E--EeCccccccccccceEEEEEchhh------cCCcccccCHHHHHHHHHH
Confidence 9998765322222221 1112111111 1 11110 0000001222221110 1123589999999999999
Q ss_pred cCCcEEEEE
Q 045407 350 AGFRSVHFW 358 (382)
Q Consensus 350 AGF~~V~v~ 358 (382)
|||+.+.+.
T Consensus 240 aGf~~v~~~ 248 (298)
T 1ri5_A 240 LGLSLVERK 248 (298)
T ss_dssp TTEEEEEEE
T ss_pred cCCEEEEec
Confidence 999998874
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=159.05 Aligned_cols=189 Identities=15% Similarity=0.104 Sum_probs=124.2
Q ss_pred CCchHHHHHHhhcCChh---hHHHHHHHHHHhh--CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 045407 80 MPSKFLLYQQSVQSPKG---DISYLQKFFLIYV--GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCM 154 (382)
Q Consensus 80 ~p~~~~LYd~~vq~p~~---Di~yl~~~f~~y~--ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~ 154 (382)
-+.++..|-+.-.++.. -+.|+.+.+.... +.....+|||+|||||.++..+++.|.. .|+|+|+|+.||+.|+
T Consensus 17 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~-~v~g~D~s~~~l~~a~ 95 (263)
T 2a14_A 17 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQ-DITLSDFTDRNREELE 95 (263)
T ss_dssp HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEE-EEEEEESCHHHHHHHH
T ss_pred HHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhc-ceeeccccHHHHHHHH
Confidence 34566666655444432 2567777776544 2223457999999999998888888863 7999999999999999
Q ss_pred HhccccccCC-------------C------------CcceE-EEeccCCCchhhhhcccchhhhhhccccccccCccccc
Q 045407 155 ENNLNKVGAD-------------G------------YSRIS-LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETS 208 (382)
Q Consensus 155 e~~~~kl~~d-------------~------------~~RI~-l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (382)
++.....++- + ..+|. ++++||.++.. +
T Consensus 96 ~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~----------------~---------- 149 (263)
T 2a14_A 96 KWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNP----------------L---------- 149 (263)
T ss_dssp HHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSST----------------T----------
T ss_pred HHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCC----------------C----------
Confidence 8642210000 0 01233 77777766420 0
Q ss_pred hhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhH
Q 045407 209 TIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLR 288 (382)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~ 288 (382)
.....++||+|+|.+.......+.+++..++++++++|+ |||+||+-...+
T Consensus 150 --------------------~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK-PGG~li~~~~~~-------- 200 (263)
T 2a14_A 150 --------------------APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVTLR-------- 200 (263)
T ss_dssp --------------------TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESS--------
T ss_pred --------------------CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEeec--------
Confidence 001146799999998554444677899999999999999 999999953210
Q ss_pred hhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 289 LQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 289 ~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
.+ .|.+ +. . . +....|+.++|+++|++|||+.+.+.
T Consensus 201 -----~~-~~~~----------------------g~-~---~--~~~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 201 -----LP-SYMV----------------------GK-R---E--FSCVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp -----CC-EEEE----------------------TT-E---E--EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -----Cc-ccee----------------------CC-e---E--eeccccCHHHHHHHHHHCCCEEEEEe
Confidence 11 1111 11 0 0 11135799999999999999998875
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=159.98 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=114.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC---CCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD---GYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d---~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..+|||+|||||.++..|++.+. .+|+|||+|++||+.|+++.... +.. .+-.+.+.++|+....+..
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~-~~v~GiD~S~~~l~~A~~~~~~~-~~~~~~~~~~~~f~~~d~~~d~~~~------- 119 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERYNKL-NSGIKTKYYKFDYIQETIRSDTFVS------- 119 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHH-CC----CCCEEEEEECCTTSSSHHH-------
T ss_pred CCeEEEEecCCcHhHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHhc-cccccccccccchhhhhcccchhhh-------
Confidence 46799999999998888988764 58999999999999999986331 100 0013678888885432100
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+ + + ..+..++||+|+|.+ ++.|+.+.+++..++++++++|+ ||
T Consensus 120 ----~--l----------------~-------------~~~~~~~FD~V~~~~-~lhy~~~~~~~~~~l~~~~r~Lk-pG 162 (302)
T 2vdw_A 120 ----S--V----------------R-------------EVFYFGKFNIIDWQF-AIHYSFHPRHYATVMNNLSELTA-SG 162 (302)
T ss_dssp ----H--H----------------H-------------TTCCSSCEEEEEEES-CGGGTCSTTTHHHHHHHHHHHEE-EE
T ss_pred ----h--h----------------h-------------ccccCCCeeEEEECc-hHHHhCCHHHHHHHHHHHHHHcC-CC
Confidence 0 0 0 002246799999987 67776555577899999999999 99
Q ss_pred cEEEEeccCCCchhhhhHhhhccCCeEE--------EEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHH
Q 045407 271 GIFVMDLYGGTSSEQKLRLQRRFANFTY--------VWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPE 342 (382)
Q Consensus 271 GiFVfDl~gg~s~e~kl~~~R~~~~~ty--------vWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~E 342 (382)
|+||+...+.+.....+ +. ..+.. .|.... .+....+ + .+.+.+. ...+.++++++++
T Consensus 163 G~~i~~~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~~~-~~~~~~~---~-~~~~~~~-----~~~~~e~~v~~~e 228 (302)
T 2vdw_A 163 GKVLITTMDGDKLSKLT---DK-KTFIIHKNLPSSENYMSVE-KIADDRI---V-VYNPSTM-----STPMTEYIIKKND 228 (302)
T ss_dssp EEEEEEEECHHHHTTCC---SC-EEEECCSSSCTTTSEEEEC-EEETTEE---E-EBCTTTB-----SSCEEEECCCHHH
T ss_pred CEEEEEeCCHHHHHHHH---hc-CCcccccccccccceeeec-ccccccc---c-eeecccc-----CCCceeeeeEHHH
Confidence 99999876533221111 00 01110 011100 0000000 1 1112221 1123458999999
Q ss_pred HHHHHHHcCCcEEEEE
Q 045407 343 IKDCLEEAGFRSVHFW 358 (382)
Q Consensus 343 I~d~LeeAGF~~V~v~ 358 (382)
|+.+++++||+.+...
T Consensus 229 l~~l~~~~Gl~lv~~~ 244 (302)
T 2vdw_A 229 IVRVFNEYGFVLVDNV 244 (302)
T ss_dssp HHHHHHHTTEEEEEEE
T ss_pred HHHHHHHCCCEEEEec
Confidence 9999999999998873
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=148.30 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=111.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++. +..+|+|+|+|+.|++.|+++... .+ ...++.++++|+.+++
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~-~~--~~~~~~~~~~d~~~~~------------- 106 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIAD-AN--LNDRIQIVQGDVHNIP------------- 106 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHH-TT--CTTTEEEEECBTTBCS-------------
T ss_pred CCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHh-cc--ccCceEEEEcCHHHCC-------------
Confidence 458999999999999999998 446899999999999999998533 11 1247999999997755
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....||+|++.+ ++.|+ .+...+++.+++.|+ |||++
T Consensus 107 -------------------------------------~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~L~-pgG~l 144 (219)
T 3dlc_A 107 -------------------------------------IEDNYADLIVSRG-SVFFW---EDVATAFREIYRILK-SGGKT 144 (219)
T ss_dssp -------------------------------------SCTTCEEEEEEES-CGGGC---SCHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------CCcccccEEEECc-hHhhc---cCHHHHHHHHHHhCC-CCCEE
Confidence 1246799999876 55665 456789999999999 99999
Q ss_pred EE-eccCCCchhhhhHh--hhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHc
Q 045407 274 VM-DLYGGTSSEQKLRL--QRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~--~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeA 350 (382)
++ +.++.......+.. ....+ .|.. .+..+.+.|+..+++++|++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------------------~~~~~~~~~~~~~~~~~l~~a 193 (219)
T 3dlc_A 145 YIGGGFGNKELRDSISAEMIRKNP----DWKE---------------------------FNRKNISQENVERFQNVLDEI 193 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCT----THHH---------------------------HHHHHSSHHHHHHHHHHHHHH
T ss_pred EEEeccCcHHHHHHHHHHHHHhHH----HHHh---------------------------hhhhccccCCHHHHHHHHHHc
Confidence 98 44443222111111 00001 1211 011123577999999999999
Q ss_pred CCcEEEEEe
Q 045407 351 GFRSVHFWL 359 (382)
Q Consensus 351 GF~~V~v~~ 359 (382)
||+.+.++.
T Consensus 194 Gf~~v~~~~ 202 (219)
T 3dlc_A 194 GISSYEIIL 202 (219)
T ss_dssp TCSSEEEEE
T ss_pred CCCeEEEEe
Confidence 999999874
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-18 Score=147.03 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=110.0
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..+++.|. +|+|+|+|+.||+.|+++. ++.++++|+.++...
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~----------~~~~~~~~~~~~~~~---------- 109 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAAG----------AGEVHLASYAQLAEA---------- 109 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHTC----------SSCEEECCHHHHHTT----------
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHhc----------ccccchhhHHhhccc----------
Confidence 357899999999999999999975 7999999999999999872 466888887655310
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.. ....+||+|++.+... ..+...+++.+++.|+ |||+
T Consensus 110 ----~~--------------------------------~~~~~fD~v~~~~~l~-----~~~~~~~l~~~~~~L~-pgG~ 147 (227)
T 3e8s_A 110 ----KV--------------------------------PVGKDYDLICANFALL-----HQDIIELLSAMRTLLV-PGGA 147 (227)
T ss_dssp ----CS--------------------------------CCCCCEEEEEEESCCC-----SSCCHHHHHHHHHTEE-EEEE
T ss_pred ----cc--------------------------------ccCCCccEEEECchhh-----hhhHHHHHHHHHHHhC-CCeE
Confidence 00 0134599999875332 3577899999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|++-..+...... ..+.-.|....+... .+. ...+.++.|++.+++.+|++|||
T Consensus 148 l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 148 LVIQTLHPWSVAD--------GDYQDGWREESFAGF-------------AGD-----WQPMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp EEEEECCTTTTCT--------TCCSCEEEEECCTTS-------------SSC-----CCCEEEEECCHHHHHHHHHHTTE
T ss_pred EEEEecCccccCc--------cccccccchhhhhcc-------------ccC-----cccceEEEecHHHHHHHHHHcCC
Confidence 9996654322210 112223443222110 000 01345688999999999999999
Q ss_pred cEEEEEe
Q 045407 353 RSVHFWL 359 (382)
Q Consensus 353 ~~V~v~~ 359 (382)
+.+++..
T Consensus 202 ~~~~~~~ 208 (227)
T 3e8s_A 202 RLVSLQE 208 (227)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999864
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-17 Score=142.36 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=84.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.|. +|+|+|+|+.||+.|+++. ..++.++++|+.++.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~--------~~~~~~~~~d~~~~~------------- 103 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRHG--------LDNVEFRQQDLFDWT------------- 103 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGGC--------CTTEEEEECCTTSCC-------------
T ss_pred CCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhcC--------CCCeEEEecccccCC-------------
Confidence 35899999999999999999974 7999999999999999832 247999999986653
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+||+|++.+ ++.|+.+ +++..+++.+++.|+ |||+|
T Consensus 104 --------------------------------------~~~~~D~v~~~~-~l~~~~~-~~~~~~l~~~~~~L~-pgG~l 142 (218)
T 3ou2_A 104 --------------------------------------PDRQWDAVFFAH-WLAHVPD-DRFEAFWESVRSAVA-PGGVV 142 (218)
T ss_dssp --------------------------------------CSSCEEEEEEES-CGGGSCH-HHHHHHHHHHHHHEE-EEEEE
T ss_pred --------------------------------------CCCceeEEEEec-hhhcCCH-HHHHHHHHHHHHHcC-CCeEE
Confidence 146799999975 6677654 568999999999999 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
++-..+
T Consensus 143 ~~~~~~ 148 (218)
T 3ou2_A 143 EFVDVT 148 (218)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 995443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=148.53 Aligned_cols=167 Identities=11% Similarity=0.087 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
..++.+.+..+. .+.+|||+|||||.++..+++.++ +|+|||+|+.||+.|+++... ++.++++|+.
T Consensus 30 ~~~~~~~l~~~~---~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~--------~v~~~~~d~~ 96 (250)
T 2p7i_A 30 HPFMVRAFTPFF---RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD--------GITYIHSRFE 96 (250)
T ss_dssp HHHHHHHHGGGC---CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS--------CEEEEESCGG
T ss_pred HHHHHHHHHhhc---CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC--------CeEEEEccHH
Confidence 356666665433 245799999999999999999986 699999999999999998521 6899999986
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
++. ...+||+|++.+ ++.|+.+ ...
T Consensus 97 ~~~---------------------------------------------------~~~~fD~v~~~~-~l~~~~~---~~~ 121 (250)
T 2p7i_A 97 DAQ---------------------------------------------------LPRRYDNIVLTH-VLEHIDD---PVA 121 (250)
T ss_dssp GCC---------------------------------------------------CSSCEEEEEEES-CGGGCSS---HHH
T ss_pred HcC---------------------------------------------------cCCcccEEEEhh-HHHhhcC---HHH
Confidence 543 146799999886 6777654 468
Q ss_pred HHHHHH-hhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEE
Q 045407 258 YFKHVL-HALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWR 336 (382)
Q Consensus 258 yFr~V~-~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~R 336 (382)
+|+.++ ++|+ |||++++...+........... .+ .|.. .... .... . ...+.+
T Consensus 122 ~l~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~---~~---~~~~-~~~~-------------~~~~-~----~~~~~~ 175 (250)
T 2p7i_A 122 LLKRINDDWLA-EGGRLFLVCPNANAVSRQIAVK---MG---IISH-NSAV-------------TEAE-F----AHGHRC 175 (250)
T ss_dssp HHHHHHHTTEE-EEEEEEEEEECTTCHHHHHHHH---TT---SSSS-TTCC-------------CHHH-H----HTTCCC
T ss_pred HHHHHHHHhcC-CCCEEEEEcCChHHHHHHHHHH---cC---cccc-chhc-------------cccc-c----cccccc
Confidence 999999 9999 9999999765443332211100 01 0100 0000 0000 0 011236
Q ss_pred ecCHHHHHHHHHHcCCcEEEEE
Q 045407 337 LWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 337 lysl~EI~d~LeeAGF~~V~v~ 358 (382)
.|+..+++++|++|||+.+++.
T Consensus 176 ~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 176 TYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEEEe
Confidence 8999999999999999999874
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=145.30 Aligned_cols=150 Identities=19% Similarity=0.120 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
..++..++.. .. .+.+|||+|||+|.++..+++.|. +|+|+|+|+.||+.|+++. ++.++++|+.
T Consensus 31 ~~~~~~~~~~-~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~----------~~~~~~~d~~ 95 (211)
T 3e23_A 31 SATLTKFLGE-LP--AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL----------GRPVRTMLFH 95 (211)
T ss_dssp CHHHHHHHTT-SC--TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH----------TSCCEECCGG
T ss_pred hHHHHHHHHh-cC--CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc----------CCceEEeeec
Confidence 3445554443 21 245799999999999999999974 7999999999999999984 3567788875
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+++ ....||+|+|.+ ++.|+. .+++..
T Consensus 96 ~~~---------------------------------------------------~~~~fD~v~~~~-~l~~~~-~~~~~~ 122 (211)
T 3e23_A 96 QLD---------------------------------------------------AIDAYDAVWAHA-CLLHVP-RDELAD 122 (211)
T ss_dssp GCC---------------------------------------------------CCSCEEEEEECS-CGGGSC-HHHHHH
T ss_pred cCC---------------------------------------------------CCCcEEEEEecC-chhhcC-HHHHHH
Confidence 544 146799999875 666655 578899
Q ss_pred HHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEe
Q 045407 258 YFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRL 337 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rl 337 (382)
+|+.+++.|+ |||+|++-+..+... . . . .+...++.
T Consensus 123 ~l~~~~~~Lk-pgG~l~~~~~~~~~~---------------~-~--------------------~-------~~~~~~~~ 158 (211)
T 3e23_A 123 VLKLIWRALK-PGGLFYASYKSGEGE---------------G-R--------------------D-------KLARYYNY 158 (211)
T ss_dssp HHHHHHHHEE-EEEEEEEEEECCSSC---------------E-E--------------------C-------TTSCEECC
T ss_pred HHHHHHHhcC-CCcEEEEEEcCCCcc---------------c-c--------------------c-------ccchhccC
Confidence 9999999999 999999965432110 0 0 0 01122468
Q ss_pred cCHHHHHHHHHHcC-CcEEEEEe
Q 045407 338 WSLPEIKDCLEEAG-FRSVHFWL 359 (382)
Q Consensus 338 ysl~EI~d~LeeAG-F~~V~v~~ 359 (382)
|+..+++.+|++|| |+.+.+..
T Consensus 159 ~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 159 PSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp CCHHHHHHHHHHHCCCSEEEEEE
T ss_pred CCHHHHHHHHHhCCCcEEEEEEe
Confidence 99999999999999 99999864
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=144.92 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
+..++..++.. .....+.+|||+|||||.++..|++.+. .+|+|+|+|+.||+.|+++... ..++.++++|+
T Consensus 78 ~~~~~~~~l~~-l~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~ 149 (254)
T 1xtp_A 78 DIEGSRNFIAS-LPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG------MPVGKFILASM 149 (254)
T ss_dssp HHHHHHHHHHT-STTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCG
T ss_pred HHHHHHHHHHh-hcccCCCEEEEECCCcCHHHHHHHHhhc-CEEEEEeCCHHHHHHHHHHhcc------CCceEEEEccH
Confidence 33555566554 3334467899999999999999999984 4799999999999999998532 14799999998
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
.+++ +....||+|++.. ++.|+.+ +++.
T Consensus 150 ~~~~--------------------------------------------------~~~~~fD~v~~~~-~l~~~~~-~~~~ 177 (254)
T 1xtp_A 150 ETAT--------------------------------------------------LPPNTYDLIVIQW-TAIYLTD-ADFV 177 (254)
T ss_dssp GGCC--------------------------------------------------CCSSCEEEEEEES-CGGGSCH-HHHH
T ss_pred HHCC--------------------------------------------------CCCCCeEEEEEcc-hhhhCCH-HHHH
Confidence 6654 1245799999876 6677654 6889
Q ss_pred HHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEE
Q 045407 257 LYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWR 336 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~R 336 (382)
.+|+.++++|+ |||+||+-.+.. ....+++. ... +..
T Consensus 178 ~~l~~~~~~Lk-pgG~l~i~~~~~-------------~~~~~~~~--------------------~~~---------~~~ 214 (254)
T 1xtp_A 178 KFFKHCQQALT-PNGYIFFKENCS-------------TGDRFLVD--------------------KED---------SSL 214 (254)
T ss_dssp HHHHHHHHHEE-EEEEEEEEEEBC---------------CCEEEE--------------------TTT---------TEE
T ss_pred HHHHHHHHhcC-CCeEEEEEecCC-------------Ccccceec--------------------ccC---------Ccc
Confidence 99999999999 999999943210 00001110 011 113
Q ss_pred ecCHHHHHHHHHHcCCcEEEEEe
Q 045407 337 LWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 337 lysl~EI~d~LeeAGF~~V~v~~ 359 (382)
.++..+++.+|++|||+.+++..
T Consensus 215 ~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 215 TRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EBCHHHHHHHHHHHTCCEEEEEE
T ss_pred cCCHHHHHHHHHHCCCEEEEeee
Confidence 57999999999999999998854
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=153.60 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=122.7
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHH-HhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWL-RSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~ela-r~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
++...+.... ..+.+|||+|||||.++..++ +..+..+|+|+|+|+.|++.|+++.... + ...+|.++++|+.+
T Consensus 107 ~~~~~l~~~l--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~ 181 (305)
T 3ocj_A 107 HFRRALQRHL--RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH-A--LAGQITLHRQDAWK 181 (305)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-T--TGGGEEEEECCGGG
T ss_pred HHHHHHHhhC--CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-C--CCCceEEEECchhc
Confidence 3444444433 235679999999999999996 5556679999999999999999986331 1 12469999999977
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
++ + ...||+|++.. ++.|+.+......+
T Consensus 182 ~~--------------------------------------------------~-~~~fD~v~~~~-~~~~~~~~~~~~~~ 209 (305)
T 3ocj_A 182 LD--------------------------------------------------T-REGYDLLTSNG-LNIYEPDDARVTEL 209 (305)
T ss_dssp CC--------------------------------------------------C-CSCEEEEECCS-SGGGCCCHHHHHHH
T ss_pred CC--------------------------------------------------c-cCCeEEEEECC-hhhhcCCHHHHHHH
Confidence 65 2 26799999854 78888898888899
Q ss_pred HHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE-Ee
Q 045407 259 FKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW-RL 337 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~-Rl 337 (382)
|+.++++|+ |||+||+..+...+.. ...+.|.-..+++...... .+ .+......++ ++
T Consensus 210 l~~~~~~Lk-pgG~l~i~~~~~~~~~----------~~~~~w~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~ 268 (305)
T 3ocj_A 210 YRRFWQALK-PGGALVTSFLTPPPAL----------SPDSPWDMQAIDPHDLQLQ---QL-------VFTRLIQPRWNAL 268 (305)
T ss_dssp HHHHHHHEE-EEEEEEEECCCCCTTT----------CTTCCCCGGGSCHHHHHHH---HH-------HHHHTTCCSCCCC
T ss_pred HHHHHHhcC-CCeEEEEEecCCCCcc----------cccccceeeccccchhhhh---hh-------HHHHHHhhhhhcc
Confidence 999999999 9999999665432221 1112233112221000000 00 0000011112 57
Q ss_pred cCHHHHHHHHHHcCCcEEEEE
Q 045407 338 WSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 338 ysl~EI~d~LeeAGF~~V~v~ 358 (382)
|+..+++.+|++|||+.+++.
T Consensus 269 ~~~~~~~~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 269 RTHAQTRAQLEEAGFTDLRFE 289 (305)
T ss_dssp CCHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEE
Confidence 999999999999999999986
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-17 Score=143.82 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=108.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.|. +|+|+|+|+.|++.|+++. ...++.++++|+.+++
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~~------------- 111 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERG-------EGPDLSFIKGDLSSLP------------- 111 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTT-------CBTTEEEEECBTTBCS-------------
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhc-------ccCCceEEEcchhcCC-------------
Confidence 45799999999999999999975 7999999999999999874 1247999999987665
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+...+||+|++.+ ++.|+. +...+++.+++.|+ |||+|
T Consensus 112 -------------------------------------~~~~~fD~v~~~~-~l~~~~---~~~~~l~~~~~~L~-pgG~l 149 (242)
T 3l8d_A 112 -------------------------------------FENEQFEAIMAIN-SLEWTE---EPLRALNEIKRVLK-SDGYA 149 (242)
T ss_dssp -------------------------------------SCTTCEEEEEEES-CTTSSS---CHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------CCCCCccEEEEcC-hHhhcc---CHHHHHHHHHHHhC-CCeEE
Confidence 1246799999875 566654 55688999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++-..+........ .|.. .+ + ...+.+.+++.+++.+|++|||+
T Consensus 150 ~i~~~~~~~~~~~~-----------~~~~-~~-----------------~-------~~~~~~~~~~~~~~~~l~~~Gf~ 193 (242)
T 3l8d_A 150 CIAILGPTAKPREN-----------SYPR-LY-----------------G-------KDVVCNTMMPWEFEQLVKEQGFK 193 (242)
T ss_dssp EEEEECTTCGGGGG-----------GGGG-GG-----------------T-------CCCSSCCCCHHHHHHHHHHTTEE
T ss_pred EEEEcCCcchhhhh-----------hhhh-hc-----------------c-------ccccccCCCHHHHHHHHHHcCCE
Confidence 99665432221100 0000 00 0 00123678999999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
.+.+.
T Consensus 194 ~~~~~ 198 (242)
T 3l8d_A 194 VVDGI 198 (242)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99863
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=145.48 Aligned_cols=170 Identities=16% Similarity=0.130 Sum_probs=120.9
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+..++... ...+.+|||+|||||.++..+++.+. +|+|+|+|+.||+.|+++.... ....+|.++++|+.++
T Consensus 55 ~l~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~ 127 (235)
T 3lcc_A 55 LIVHLVDTS--SLPLGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSS---PKAEYFSFVKEDVFTW 127 (235)
T ss_dssp HHHHHHHTT--CSCCEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTS---GGGGGEEEECCCTTTC
T ss_pred HHHHHHHhc--CCCCCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhcc---CCCcceEEEECchhcC
Confidence 444544431 22346899999999999999998774 7999999999999999986320 0124799999999876
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
. . ...||+|++.+ ++.++. +++...++
T Consensus 128 ~-----------------~----------------------------------~~~fD~v~~~~-~l~~~~-~~~~~~~l 154 (235)
T 3lcc_A 128 R-----------------P----------------------------------TELFDLIFDYV-FFCAIE-PEMRPAWA 154 (235)
T ss_dssp C-----------------C----------------------------------SSCEEEEEEES-STTTSC-GGGHHHHH
T ss_pred C-----------------C----------------------------------CCCeeEEEECh-hhhcCC-HHHHHHHH
Confidence 5 1 34799999864 666664 56889999
Q ss_pred HHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecC
Q 045407 260 KHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWS 339 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlys 339 (382)
+.+++.|+ |||+||+-.++.... ..+. . ..++
T Consensus 155 ~~~~~~Lk-pgG~l~~~~~~~~~~-------------------------------------~~~~-~---------~~~~ 186 (235)
T 3lcc_A 155 KSMYELLK-PDGELITLMYPITDH-------------------------------------VGGP-P---------YKVD 186 (235)
T ss_dssp HHHHHHEE-EEEEEEEEECCCSCC-------------------------------------CSCS-S---------CCCC
T ss_pred HHHHHHCC-CCcEEEEEEeccccc-------------------------------------CCCC-C---------ccCC
Confidence 99999999 999999854421000 0011 0 1378
Q ss_pred HHHHHHHHHHcCCcEEEEEeccCchhhhhccccCcCcccccc
Q 045407 340 LPEIKDCLEEAGFRSVHFWLREMPDAREMRNTEGLGGFSRCK 381 (382)
Q Consensus 340 l~EI~d~LeeAGF~~V~v~~r~~~~~~~~~~~~~~~~~~~~~ 381 (382)
..+++.+|+++||+.+.+.. .+... ....|...|.|+|
T Consensus 187 ~~~~~~~l~~~Gf~~~~~~~--~~~~~--~~~~g~e~~~~~~ 224 (235)
T 3lcc_A 187 VSTFEEVLVPIGFKAVSVEE--NPHAI--PTRKGKEKLGRWK 224 (235)
T ss_dssp HHHHHHHHGGGTEEEEEEEE--CTTCC--TTTTTSCEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEe--cCCcc--ccccCHHHHhhhh
Confidence 99999999999999988753 33332 2334555666665
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=146.55 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=89.5
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc-----cC---CCCcceEE
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV-----GA---DGYSRISL 171 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl-----~~---d~~~RI~l 171 (382)
++.+++... .-..+.+|||+|||||.++..|+++|. +|+|||+|+.||+.|++++...- +. ....+|.+
T Consensus 10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence 455555442 222346799999999999999999985 79999999999999999853100 00 01247999
Q ss_pred EeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC
Q 045407 172 FHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK 251 (382)
Q Consensus 172 ~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~ 251 (382)
+++|+.+++... ..+||+|++.+ ++++++
T Consensus 87 ~~~d~~~l~~~~-------------------------------------------------~~~fD~v~~~~-~l~~l~- 115 (203)
T 1pjz_A 87 WCGDFFALTARD-------------------------------------------------IGHCAAFYDRA-AMIALP- 115 (203)
T ss_dssp EEECCSSSTHHH-------------------------------------------------HHSEEEEEEES-CGGGSC-
T ss_pred EECccccCCccc-------------------------------------------------CCCEEEEEECc-chhhCC-
Confidence 999998876200 15699999864 777776
Q ss_pred hhHHHHHHHHHHhhccCCCcEEEE
Q 045407 252 RADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 252 r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.++...++++++++|+ |||++++
T Consensus 116 ~~~~~~~l~~~~r~Lk-pgG~~~l 138 (203)
T 1pjz_A 116 ADMRERYVQHLEALMP-QACSGLL 138 (203)
T ss_dssp HHHHHHHHHHHHHHSC-SEEEEEE
T ss_pred HHHHHHHHHHHHHHcC-CCcEEEE
Confidence 4677889999999999 9998443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=139.95 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-ccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-VGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-l~~d~~~RI~l~~gDV~ 177 (382)
.++.+.+... .+.+|||+|||||.++..|++.++..+|+|||+|+.||+.|+++.... +......++.++++|+.
T Consensus 19 ~~l~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 19 NGVVAALKQS----NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHT----TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 4555555432 245799999999999999999987678999999999999999985320 00000127999999985
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
.++ . ...+||+|+|.+ ++.|+ ...++..
T Consensus 95 ~~~-----------------~---------------------------------~~~~fD~v~~~~-~l~~~-~~~~~~~ 122 (217)
T 3jwh_A 95 YQD-----------------K---------------------------------RFHGYDAATVIE-VIEHL-DLSRLGA 122 (217)
T ss_dssp SCC-----------------G---------------------------------GGCSCSEEEEES-CGGGC-CHHHHHH
T ss_pred ccc-----------------c---------------------------------cCCCcCEEeeHH-HHHcC-CHHHHHH
Confidence 544 1 136799999775 77777 5568899
Q ss_pred HHHHHHhhccCCCcEEEEecc
Q 045407 258 YFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~ 278 (382)
+++.+++.|+ |||+||+-.+
T Consensus 123 ~l~~~~~~Lk-pgG~li~~~~ 142 (217)
T 3jwh_A 123 FERVLFEFAQ-PKIVIVTTPN 142 (217)
T ss_dssp HHHHHHTTTC-CSEEEEEEEB
T ss_pred HHHHHHHHcC-CCEEEEEccC
Confidence 9999999999 9998888543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=144.30 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=110.8
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..+++.. ..+|+|||+|+.||+.|+++... . .++.++++|+.+++
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~-~~~~~~~~d~~~~~----------- 115 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG-----N-NKIIFEANDILTKE----------- 115 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS-----C-TTEEEEECCTTTCC-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc-----C-CCeEEEECccccCC-----------
Confidence 335689999999999999999983 25899999999999999998532 1 58999999998765
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+...+||+|++.. ++.++. ..+...+|+.++++|+ |||
T Consensus 116 ---------------------------------------~~~~~fD~v~~~~-~l~~~~-~~~~~~~l~~~~~~L~-pgG 153 (266)
T 3ujc_A 116 ---------------------------------------FPENNFDLIYSRD-AILALS-LENKNKLFQKCYKWLK-PTG 153 (266)
T ss_dssp ---------------------------------------CCTTCEEEEEEES-CGGGSC-HHHHHHHHHHHHHHEE-EEE
T ss_pred ---------------------------------------CCCCcEEEEeHHH-HHHhcC-hHHHHHHHHHHHHHcC-CCC
Confidence 2246799999964 666653 4788999999999999 999
Q ss_pred EEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 272 IFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 272 iFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
++++-........ .+.-.|.. .+ ...+.+.++.++++.+|+++|
T Consensus 154 ~l~~~~~~~~~~~----------~~~~~~~~-----------------------~~---~~~~~~~~~~~~~~~~l~~~G 197 (266)
T 3ujc_A 154 TLLITDYCATEKE----------NWDDEFKE-----------------------YV---KQRKYTLITVEEYADILTACN 197 (266)
T ss_dssp EEEEEEEEESCGG----------GCCHHHHH-----------------------HH---HHHTCCCCCHHHHHHHHHHTT
T ss_pred EEEEEEeccCCcc----------cchHHHHH-----------------------HH---hcCCCCCCCHHHHHHHHHHcC
Confidence 9999433111100 00000000 00 001235789999999999999
Q ss_pred CcEEEEE
Q 045407 352 FRSVHFW 358 (382)
Q Consensus 352 F~~V~v~ 358 (382)
|+.+++.
T Consensus 198 f~~~~~~ 204 (266)
T 3ujc_A 198 FKNVVSK 204 (266)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 9999875
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-17 Score=146.75 Aligned_cols=166 Identities=15% Similarity=0.162 Sum_probs=115.6
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
+..++..+.+.+. ...+.+|||+|||||.++..+++.+. +|+|+|+|++||+.|+++... .+..++.+++
T Consensus 22 ~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~----~~~~~v~~~~ 91 (260)
T 1vl5_A 22 KGSDLAKLMQIAA----LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEG----NGHQQVEYVQ 91 (260)
T ss_dssp -CCCHHHHHHHHT----CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHH----TTCCSEEEEE
T ss_pred CHHHHHHHHHHhC----CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHh----cCCCceEEEE
Confidence 4455566666543 23356899999999999999999985 799999999999999987532 1224699999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
+|+.+++ +....||+|++.+ ++.|+.
T Consensus 92 ~d~~~l~--------------------------------------------------~~~~~fD~V~~~~-~l~~~~--- 117 (260)
T 1vl5_A 92 GDAEQMP--------------------------------------------------FTDERFHIVTCRI-AAHHFP--- 117 (260)
T ss_dssp CCC-CCC--------------------------------------------------SCTTCEEEEEEES-CGGGCS---
T ss_pred ecHHhCC--------------------------------------------------CCCCCEEEEEEhh-hhHhcC---
Confidence 9987765 2246799999875 666665
Q ss_pred HHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeee
Q 045407 254 DLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFS 332 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fs 332 (382)
+....|++++++|+ |||+|++ +............... ++. ....
T Consensus 118 d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~--------~~~-----------------~~~~--------- 162 (260)
T 1vl5_A 118 NPASFVSEAYRVLK-KGGQLLLVDNSAPENDAFDVFYNY--------VEK-----------------ERDY--------- 162 (260)
T ss_dssp CHHHHHHHHHHHEE-EEEEEEEEEEEBCSSHHHHHHHHH--------HHH-----------------HHCT---------
T ss_pred CHHHHHHHHHHHcC-CCCEEEEEEcCCCCCHHHHHHHHH--------HHH-----------------hcCc---------
Confidence 45689999999999 9999998 5543222111000000 000 0001
Q ss_pred eeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 333 YNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 333 y~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
.+.+.|+..++.++|++|||+.+.+.
T Consensus 163 ~~~~~~~~~~~~~~l~~aGf~~~~~~ 188 (260)
T 1vl5_A 163 SHHRAWKKSDWLKMLEEAGFELEELH 188 (260)
T ss_dssp TCCCCCBHHHHHHHHHHHTCEEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 11367899999999999999988764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=144.75 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=106.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.|. +|+|||+|++|++.|+++ +.++++|+.++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~------------ 95 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLK------------ 95 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHTT------------SEEECSCHHHHHH------------
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHhh------------cceeeccHHHHhh------------
Confidence 46799999999999999999986 599999999999998875 5678888765420
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.+...+||+|+|.. ++.++. .+++..+|+.+++.|+ |||+|
T Consensus 96 ------------------------------------~~~~~~fD~i~~~~-~l~~~~-~~~~~~~l~~~~~~Lk-pgG~l 136 (240)
T 3dli_A 96 ------------------------------------SLPDKYLDGVMISH-FVEHLD-PERLFELLSLCYSKMK-YSSYI 136 (240)
T ss_dssp ------------------------------------TSCTTCBSEEEEES-CGGGSC-GGGHHHHHHHHHHHBC-TTCCE
T ss_pred ------------------------------------hcCCCCeeEEEECC-chhhCC-cHHHHHHHHHHHHHcC-CCcEE
Confidence 02256799999964 677765 5688999999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++...+...... + .. .| .++ .+.+.|+..+++.+|++|||+
T Consensus 137 ~~~~~~~~~~~~-~--~~-------~~----~~~-------------------------~~~~~~~~~~l~~~l~~aGf~ 177 (240)
T 3dli_A 137 VIESPNPTSLYS-L--IN-------FY----IDP-------------------------THKKPVHPETLKFILEYLGFR 177 (240)
T ss_dssp EEEEECTTSHHH-H--HH-------HT----TST-------------------------TCCSCCCHHHHHHHHHHHTCE
T ss_pred EEEeCCcchhHH-H--HH-------Hh----cCc-------------------------cccccCCHHHHHHHHHHCCCe
Confidence 997665332211 0 00 00 000 123678999999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
.+.+.
T Consensus 178 ~~~~~ 182 (240)
T 3dli_A 178 DVKIE 182 (240)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98874
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=148.68 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=111.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCC-cceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGY-SRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~-~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||.++..+++.|. +|+|||+|+.||+.|+++... .+. .++.++++|+.+++.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~----~~~~~~v~~~~~d~~~~~~----------- 131 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEA----KGVSDNMQFIHCAAQDVAS----------- 131 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-----CCGGGEEEEESCGGGTGG-----------
T ss_pred CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh----cCCCcceEEEEcCHHHhhh-----------
Confidence 67899999999999999999974 799999999999999998532 121 479999999877651
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+...+||+|++.+ ++.|+.+ ...+|+.+++.|+ |||+
T Consensus 132 --------------------------------------~~~~~fD~v~~~~-~l~~~~~---~~~~l~~~~~~Lk-pgG~ 168 (285)
T 4htf_A 132 --------------------------------------HLETPVDLILFHA-VLEWVAD---PRSVLQTLWSVLR-PGGV 168 (285)
T ss_dssp --------------------------------------GCSSCEEEEEEES-CGGGCSC---HHHHHHHHHHTEE-EEEE
T ss_pred --------------------------------------hcCCCceEEEECc-hhhcccC---HHHHHHHHHHHcC-CCeE
Confidence 1246799999964 6667654 4789999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|++-..+........ .....+.++... ..... .. .....+.|++.+++.+|++|||
T Consensus 169 l~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~----------~~------~~~~~~~~~~~~l~~~l~~aGf 224 (285)
T 4htf_A 169 LSLMFYNAHGLLMHN---MVAGNFDYVQAG-----MPKKK----------KR------TLSPDYPRDPTQVYLWLEEAGW 224 (285)
T ss_dssp EEEEEEBHHHHHHHH---HHTTCHHHHHTT-----CCCC--------------------CCCSCCBCHHHHHHHHHHTTC
T ss_pred EEEEEeCCchHHHHH---HHhcCHHHHhhh-----ccccc----------cc------cCCCCCCCCHHHHHHHHHHCCC
Confidence 999765432211100 000111111100 00000 00 0012368999999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.+.+.
T Consensus 225 ~v~~~~ 230 (285)
T 4htf_A 225 QIMGKT 230 (285)
T ss_dssp EEEEEE
T ss_pred ceeeee
Confidence 998764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=142.27 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=119.7
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG 162 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~ 162 (382)
....|+.......+-...+...+.....-..+.+|||+|||||.++..+++.++. +|+|||+|+.|++.|+++... .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~-~~ 93 (257)
T 3f4k_A 16 ICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVK-AN 93 (257)
T ss_dssp HHHHHTTSSCSSSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHH-TT
T ss_pred HHHHHcCccccCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHH-cC
Confidence 4455555543333333444444443212222458999999999999999999874 899999999999999998533 11
Q ss_pred CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc
Q 045407 163 ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF 242 (382)
Q Consensus 163 ~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af 242 (382)
-..++.++++|+.+++ +...+||+|+|.
T Consensus 94 --~~~~~~~~~~d~~~~~--------------------------------------------------~~~~~fD~v~~~ 121 (257)
T 3f4k_A 94 --CADRVKGITGSMDNLP--------------------------------------------------FQNEELDLIWSE 121 (257)
T ss_dssp --CTTTEEEEECCTTSCS--------------------------------------------------SCTTCEEEEEEE
T ss_pred --CCCceEEEECChhhCC--------------------------------------------------CCCCCEEEEEec
Confidence 1236999999997665 124679999998
Q ss_pred cchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc--CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEe
Q 045407 243 NYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY--GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHL 320 (382)
Q Consensus 243 n~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~--gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~ 320 (382)
. ++.++ +...+|+.+++.|+ |||++++-.. ........+ .-.|..
T Consensus 122 ~-~l~~~----~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~---------~~~~~~------------------ 168 (257)
T 3f4k_A 122 G-AIYNI----GFERGMNEWSKYLK-KGGFIAVSEASWFTSERPAEI---------EDFWMD------------------ 168 (257)
T ss_dssp S-CSCCC----CHHHHHHHHHTTEE-EEEEEEEEEEEESSSCCCHHH---------HHHHHH------------------
T ss_pred C-hHhhc----CHHHHHHHHHHHcC-CCcEEEEEEeeccCCCChHHH---------HHHHHH------------------
Confidence 5 55555 46789999999999 9999998431 110000000 001211
Q ss_pred ecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 321 QKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 321 ~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
. + -.+++++++..+|++|||+.+.++
T Consensus 169 -----~----~---~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 169 -----A----Y---PEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp -----H----C---TTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred -----h----C---CCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 0 125789999999999999999976
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=142.58 Aligned_cols=100 Identities=20% Similarity=0.140 Sum_probs=83.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..+++++. +|+|+|+|+.|++.|+++.. .++.++++|+.+++
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~~------------- 102 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSFE------------- 102 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSCC-------------
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhcC-------------
Confidence 45799999999999999999974 79999999999999999852 37889999998766
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ..+||+|++.+ ++.++.+ .+...+++.+++.|+ |||++
T Consensus 103 ----~----------------------------------~~~fD~v~~~~-~l~~~~~-~~~~~~l~~~~~~Lk-pgG~l 141 (220)
T 3hnr_A 103 ----V----------------------------------PTSIDTIVSTY-AFHHLTD-DEKNVAIAKYSQLLN-KGGKI 141 (220)
T ss_dssp ----C----------------------------------CSCCSEEEEES-CGGGSCH-HHHHHHHHHHHHHSC-TTCEE
T ss_pred ----C----------------------------------CCCeEEEEECc-chhcCCh-HHHHHHHHHHHHhcC-CCCEE
Confidence 1 26799999885 7777665 344668999999999 99999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
++-.
T Consensus 142 ~i~~ 145 (220)
T 3hnr_A 142 VFAD 145 (220)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9953
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-17 Score=147.64 Aligned_cols=134 Identities=13% Similarity=0.062 Sum_probs=97.7
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG 162 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~ 162 (382)
....|+.......+....+...+.....-..+.+|||+|||||.++..+++.+ ..+|+|||+|+.||+.|+++... .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~-~~ 93 (267)
T 3kkz_A 16 ICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHV-TGQVTGLDFLSGFIDIFNRNARQ-SG 93 (267)
T ss_dssp HHHHHHTSSCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTC-SSEEEEEESCHHHHHHHHHHHHH-TT
T ss_pred HHHHHhhccccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHH-cC
Confidence 34455555444444445555555432212335689999999999999999994 35899999999999999998533 11
Q ss_pred CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc
Q 045407 163 ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF 242 (382)
Q Consensus 163 ~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af 242 (382)
-..+|.++++|+.+++ +...+||+|+|.
T Consensus 94 --~~~~v~~~~~d~~~~~--------------------------------------------------~~~~~fD~i~~~ 121 (267)
T 3kkz_A 94 --LQNRVTGIVGSMDDLP--------------------------------------------------FRNEELDLIWSE 121 (267)
T ss_dssp --CTTTEEEEECCTTSCC--------------------------------------------------CCTTCEEEEEES
T ss_pred --CCcCcEEEEcChhhCC--------------------------------------------------CCCCCEEEEEEc
Confidence 1246999999997765 124679999988
Q ss_pred cchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 243 NYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 243 n~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
+ ++.++ +...+|+.++++|+ |||++++-
T Consensus 122 ~-~~~~~----~~~~~l~~~~~~Lk-pgG~l~~~ 149 (267)
T 3kkz_A 122 G-AIYNI----GFERGLNEWRKYLK-KGGYLAVS 149 (267)
T ss_dssp S-CGGGT----CHHHHHHHHGGGEE-EEEEEEEE
T ss_pred C-Cceec----CHHHHHHHHHHHcC-CCCEEEEE
Confidence 6 55555 46789999999999 99999983
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=141.77 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-ccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-VGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-l~~d~~~RI~l~~gDV~ 177 (382)
.++.+++... .+.+|||+|||||.++..|++.++..+|+|||+|+.|++.|+++.... +......++.++++|+.
T Consensus 19 ~~l~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 19 GTVVAVLKSV----NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp HHHHHHHHHT----TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred HHHHHHHhhc----CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 5555555432 245799999999999999999987678999999999999999985321 10000127999999985
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
.++ . ...+||+|+|.+ ++.|+ ...++..
T Consensus 95 ~~~-----------------~---------------------------------~~~~fD~V~~~~-~l~~~-~~~~~~~ 122 (219)
T 3jwg_A 95 YRD-----------------K---------------------------------RFSGYDAATVIE-VIEHL-DENRLQA 122 (219)
T ss_dssp SCC-----------------G---------------------------------GGTTCSEEEEES-CGGGC-CHHHHHH
T ss_pred ccc-----------------c---------------------------------ccCCCCEEEEHH-HHHhC-CHHHHHH
Confidence 554 1 146799999765 77777 4467899
Q ss_pred HHHHHHhhccCCCcEEEEecc
Q 045407 258 YFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~ 278 (382)
+++.+++.|+ |||+||.-.+
T Consensus 123 ~l~~~~~~Lk-pgG~~i~~~~ 142 (219)
T 3jwg_A 123 FEKVLFEFTR-PQTVIVSTPN 142 (219)
T ss_dssp HHHHHHTTTC-CSEEEEEEEB
T ss_pred HHHHHHHhhC-CCEEEEEccc
Confidence 9999999999 9998887543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=143.52 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=108.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++.+. .+|+|+|+|+.||+.|+++.... +..++.++++|+.+++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~------------- 141 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEE----GKRVRNYFCCGLQDFT------------- 141 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGG----GGGEEEEEECCGGGCC-------------
T ss_pred CCEEEEECCCCCHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHhhhc----CCceEEEEEcChhhcC-------------
Confidence 56899999999999999999874 58999999999999999986331 1347899999986554
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ...+||+|++.+ ++.|+.+ .++..+|+.+++.|+ |||+|
T Consensus 142 ----~---------------------------------~~~~fD~v~~~~-~l~~~~~-~~~~~~l~~~~~~Lk-pgG~l 181 (241)
T 2ex4_A 142 ----P---------------------------------EPDSYDVIWIQW-VIGHLTD-QHLAEFLRRCKGSLR-PNGII 181 (241)
T ss_dssp ----C---------------------------------CSSCEEEEEEES-CGGGSCH-HHHHHHHHHHHHHEE-EEEEE
T ss_pred ----C---------------------------------CCCCEEEEEEcc-hhhhCCH-HHHHHHHHHHHHhcC-CCeEE
Confidence 1 134799999875 6777654 567899999999999 99999
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|+ |.... . ..+|.. ... ...++..+++++|++|||
T Consensus 182 ~i~~~~~~--------------~-~~~~~~-------------------~~~----------~~~~~~~~~~~~l~~aGf 217 (241)
T 2ex4_A 182 VIKDNMAQ--------------E-GVILDD-------------------VDS----------SVCRDLDVVRRIICSAGL 217 (241)
T ss_dssp EEEEEEBS--------------S-SEEEET-------------------TTT----------EEEEBHHHHHHHHHHTTC
T ss_pred EEEEccCC--------------C-cceecc-------------------cCC----------cccCCHHHHHHHHHHcCC
Confidence 98 43211 0 011211 011 123489999999999999
Q ss_pred cEEEEEe
Q 045407 353 RSVHFWL 359 (382)
Q Consensus 353 ~~V~v~~ 359 (382)
+.+.+..
T Consensus 218 ~~~~~~~ 224 (241)
T 2ex4_A 218 SLLAEER 224 (241)
T ss_dssp CEEEEEE
T ss_pred eEEEeee
Confidence 9998853
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-16 Score=136.79 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=96.1
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+..++........+.+|||+|||||.++..|++.+. +|+|+|+|+.||+.|+++... ..++.++++|+.++
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~ 109 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKR------WSHISWAATDILQF 109 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTT------CSSEEEEECCTTTC
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhccc------CCCeEEEEcchhhC
Confidence 3344444444444457899999999999999999984 799999999999999998532 23799999998766
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
. . ..+||+|+|. .++.|+.+.+++..+|
T Consensus 110 ~-----------------~----------------------------------~~~fD~v~~~-~~l~~~~~~~~~~~~l 137 (216)
T 3ofk_A 110 S-----------------T----------------------------------AELFDLIVVA-EVLYYLEDMTQMRTAI 137 (216)
T ss_dssp C-----------------C----------------------------------SCCEEEEEEE-SCGGGSSSHHHHHHHH
T ss_pred C-----------------C----------------------------------CCCccEEEEc-cHHHhCCCHHHHHHHH
Confidence 5 1 4679999997 5888999999999999
Q ss_pred HHHHhhccCCCcEEEEec
Q 045407 260 KHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl 277 (382)
+.+++.|+ |||+|++..
T Consensus 138 ~~~~~~L~-pgG~l~~~~ 154 (216)
T 3ofk_A 138 DNMVKMLA-PGGHLVFGS 154 (216)
T ss_dssp HHHHHTEE-EEEEEEEEE
T ss_pred HHHHHHcC-CCCEEEEEe
Confidence 99999999 999999954
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-16 Score=131.18 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=104.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++. .++.++++|+.+++
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~---------~~~~~~~~d~~~~~------------- 102 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDF---------PEARWVVGDLSVDQ------------- 102 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTSC-------------
T ss_pred CCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhC---------CCCcEEEcccccCC-------------
Confidence 45799999999999999999974 7999999999999999874 25889999987654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ....||+|++....+.++ ..+++..+++.+++.|+ |||++
T Consensus 103 ----~---------------------------------~~~~~D~i~~~~~~~~~~-~~~~~~~~l~~~~~~l~-~~G~l 143 (195)
T 3cgg_A 103 ----I---------------------------------SETDFDLIVSAGNVMGFL-AEDGREPALANIHRALG-ADGRA 143 (195)
T ss_dssp ----C---------------------------------CCCCEEEEEECCCCGGGS-CHHHHHHHHHHHHHHEE-EEEEE
T ss_pred ----C---------------------------------CCCceeEEEECCcHHhhc-ChHHHHHHHHHHHHHhC-CCCEE
Confidence 1 245799999875566655 55788999999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++.+... +.|+.+++..+|+++||+
T Consensus 144 ~~~~~~~-------------------------------------------------------~~~~~~~~~~~l~~~Gf~ 168 (195)
T 3cgg_A 144 VIGFGAG-------------------------------------------------------RGWVFGDFLEVAERVGLE 168 (195)
T ss_dssp EEEEETT-------------------------------------------------------SSCCHHHHHHHHHHHTEE
T ss_pred EEEeCCC-------------------------------------------------------CCcCHHHHHHHHHHcCCE
Confidence 9854210 017889999999999999
Q ss_pred EEEEEe
Q 045407 354 SVHFWL 359 (382)
Q Consensus 354 ~V~v~~ 359 (382)
.++++.
T Consensus 169 ~~~~~~ 174 (195)
T 3cgg_A 169 LENAFE 174 (195)
T ss_dssp EEEEES
T ss_pred Eeeeec
Confidence 888863
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=139.32 Aligned_cols=158 Identities=13% Similarity=0.051 Sum_probs=113.9
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++... .+.++.++++|+.+++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~--------------- 89 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQE-----KGVKITTVQSNLADFD--------------- 89 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHH-----HTCCEEEECCBTTTBS---------------
T ss_pred CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHh-----cCCceEEEEcChhhcC---------------
Confidence 799999999999999999975 799999999999999998532 1137899999987665
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+....||+|++. +.++ ..++...+++.+++.|+ |||+|++
T Consensus 90 -----------------------------------~~~~~fD~v~~~---~~~~-~~~~~~~~l~~~~~~L~-pgG~l~~ 129 (202)
T 2kw5_A 90 -----------------------------------IVADAWEGIVSI---FCHL-PSSLRQQLYPKVYQGLK-PGGVFIL 129 (202)
T ss_dssp -----------------------------------CCTTTCSEEEEE---CCCC-CHHHHHHHHHHHHTTCC-SSEEEEE
T ss_pred -----------------------------------CCcCCccEEEEE---hhcC-CHHHHHHHHHHHHHhcC-CCcEEEE
Confidence 124679999984 3444 56789999999999999 9999999
Q ss_pred eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEE
Q 045407 276 DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSV 355 (382)
Q Consensus 276 Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V 355 (382)
..+...... |.. +. . ...++.|+..+|+.+|+ ||+.+
T Consensus 130 ~~~~~~~~~---------------~~~--------------------~~-~-----~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 130 EGFAPEQLQ---------------YNT--------------------GG-P-----KDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp EEECTTTGG---------------GTS--------------------CC-S-----SSGGGCCCHHHHHHHCS--SSCEE
T ss_pred EEecccccc---------------CCC--------------------CC-C-----CcceeecCHHHHHHHhc--CceEE
Confidence 776432210 000 00 0 01135799999999998 99999
Q ss_pred EEEeccCchhhhhccccCcCcccc
Q 045407 356 HFWLREMPDAREMRNTEGLGGFSR 379 (382)
Q Consensus 356 ~v~~r~~~~~~~~~~~~~~~~~~~ 379 (382)
.+.-...+ ..+.....++..|-|
T Consensus 167 ~~~~~~~~-~~~g~~~~~~~~~i~ 189 (202)
T 2kw5_A 167 IANNLERN-LDEGAYHQGKAALIQ 189 (202)
T ss_dssp EEEEEEEE-CSCSSSSCCEEEEEE
T ss_pred EEEEEEee-cCCCCCcccHHHHHH
Confidence 87533322 233344445555544
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=149.58 Aligned_cols=118 Identities=12% Similarity=0.030 Sum_probs=91.8
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+..++.. .+-....+|||+|||||.++..+++. | .+|+|||+|++||+.|+++... .+ -..+|.++++|+.+
T Consensus 60 ~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~-~~--~~~~v~~~~~d~~~ 133 (302)
T 3hem_A 60 KRKLALDK-LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDE-VD--SPRRKEVRIQGWEE 133 (302)
T ss_dssp HHHHHHHT-TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHH-SC--CSSCEEEEECCGGG
T ss_pred HHHHHHHH-cCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHh-cC--CCCceEEEECCHHH
Confidence 44444443 33333458999999999999999998 6 5899999999999999998533 11 12379999999854
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh------
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR------ 252 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r------ 252 (382)
+ .++||+|++.. ++.++.++
T Consensus 134 ~-----------------------------------------------------~~~fD~v~~~~-~~~~~~d~~~~~~~ 159 (302)
T 3hem_A 134 F-----------------------------------------------------DEPVDRIVSLG-AFEHFADGAGDAGF 159 (302)
T ss_dssp C-----------------------------------------------------CCCCSEEEEES-CGGGTTCCSSCCCT
T ss_pred c-----------------------------------------------------CCCccEEEEcc-hHHhcCccccccch
Confidence 3 25799999884 77787655
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
+++..+|+.++++|+ |||+|++-..
T Consensus 160 ~~~~~~l~~~~~~Lk-pgG~l~i~~~ 184 (302)
T 3hem_A 160 ERYDTFFKKFYNLTP-DDGRMLLHTI 184 (302)
T ss_dssp THHHHHHHHHHHSSC-TTCEEEEEEE
T ss_pred hHHHHHHHHHHHhcC-CCcEEEEEEE
Confidence 788999999999999 9999999544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=146.68 Aligned_cols=122 Identities=16% Similarity=0.224 Sum_probs=91.2
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc--------cccC-----CCC
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN--------KVGA-----DGY 166 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~--------kl~~-----d~~ 166 (382)
.+.+++........+.+|||+|||||.++..|++.|. +|+|||+|+.||+.|++++.. ..+. ...
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSS 132 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCC
Confidence 4444444332223356799999999999999999995 799999999999999887521 0000 012
Q ss_pred cceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh
Q 045407 167 SRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC 246 (382)
Q Consensus 167 ~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~ 246 (382)
.+|.++++|+.+++. . ..++||+|++. .++
T Consensus 133 ~~i~~~~~D~~~l~~-----------------~--------------------------------~~~~FD~V~~~-~~l 162 (252)
T 2gb4_A 133 GSISLYCCSIFDLPR-----------------A--------------------------------NIGKFDRIWDR-GAL 162 (252)
T ss_dssp SSEEEEESCTTTGGG-----------------G--------------------------------CCCCEEEEEES-SST
T ss_pred CceEEEECccccCCc-----------------c--------------------------------cCCCEEEEEEh-hhh
Confidence 579999999988761 0 02679999985 477
Q ss_pred cccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 247 CCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 247 ~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
++|+ .++...++++++++|+ |||+|++
T Consensus 163 ~~l~-~~~~~~~l~~~~~~Lk-pGG~l~l 189 (252)
T 2gb4_A 163 VAIN-PGDHDRYADIILSLLR-KEFQYLV 189 (252)
T ss_dssp TTSC-GGGHHHHHHHHHHTEE-EEEEEEE
T ss_pred hhCC-HHHHHHHHHHHHHHcC-CCeEEEE
Confidence 7875 4677899999999999 9999975
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=138.59 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=107.0
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..+++.+ +..+|+|+|+|+.|++.|+++... .+..++.++++|+.+++
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~~d~~~~~------------ 101 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK----LGLKNVEVLKSEENKIP------------ 101 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH----HTCTTEEEEECBTTBCS------------
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH----cCCCcEEEEecccccCC------------
Confidence 4589999999999999999997 556899999999999999998533 12237999999987655
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+....||+|++.+ ++.++. +...+++.+++.|+ |||+
T Consensus 102 --------------------------------------~~~~~fD~v~~~~-~l~~~~---~~~~~l~~~~~~Lk-pgG~ 138 (219)
T 3dh0_A 102 --------------------------------------LPDNTVDFIFMAF-TFHELS---EPLKFLEELKRVAK-PFAY 138 (219)
T ss_dssp --------------------------------------SCSSCEEEEEEES-CGGGCS---SHHHHHHHHHHHEE-EEEE
T ss_pred --------------------------------------CCCCCeeEEEeeh-hhhhcC---CHHHHHHHHHHHhC-CCeE
Confidence 1246799999875 555554 56789999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
+++-.+.... . . .+. . ..+.|+..+++.+|+++||
T Consensus 139 l~i~~~~~~~------------~----------~---------------~~~-~-------~~~~~~~~~~~~~l~~~Gf 173 (219)
T 3dh0_A 139 LAIIDWKKEE------------R----------D---------------KGP-P-------PEEVYSEWEVGLILEDAGI 173 (219)
T ss_dssp EEEEEECSSC------------C----------S---------------SSC-C-------GGGSCCHHHHHHHHHHTTC
T ss_pred EEEEEecccc------------c----------c---------------cCC-c-------hhcccCHHHHHHHHHHCCC
Confidence 9983221100 0 0 000 0 1146799999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.+.++
T Consensus 174 ~~~~~~ 179 (219)
T 3dh0_A 174 RVGRVV 179 (219)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999875
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=144.55 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=104.1
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC-------------CC-------------C
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA-------------DG-------------Y 166 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~-------------d~-------------~ 166 (382)
.+.+|||+|||||.++..+++... .+|+|||+|+.||+.|+++.....+. .+ .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC-CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 356899999999996554444333 48999999999999998864210000 00 0
Q ss_pred cceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh
Q 045407 167 SRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC 246 (382)
Q Consensus 167 ~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~ 246 (382)
..+.++++|+.++.. +. ...+...+||+|+|.+ ++
T Consensus 150 ~~~~~~~~D~~~~~~----------------~~----------------------------~~~~~~~~fD~V~~~~-~l 184 (289)
T 2g72_A 150 RVKRVLPIDVHQPQP----------------LG----------------------------AGSPAPLPADALVSAF-CL 184 (289)
T ss_dssp HEEEEECCCTTSSST----------------TC----------------------------SSCSSCSSEEEEEEES-CH
T ss_pred hhceEEecccCCCCC----------------cc----------------------------ccccCCCCCCEEEehh-hh
Confidence 014566667765220 10 0012235699999987 44
Q ss_pred cccC-ChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccc
Q 045407 247 CCLH-KRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQK 325 (382)
Q Consensus 247 ~yL~-~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~ 325 (382)
.++. +.+++..+|++++++|+ |||+||+... .... +|. . +.
T Consensus 185 ~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~~--------------~~~~--~~~------------------~--~~- 226 (289)
T 2g72_A 185 EAVSPDLASFQRALDHITTLLR-PGGHLLLIGA--------------LEES--WYL------------------A--GE- 226 (289)
T ss_dssp HHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEE--------------ESCC--EEE------------------E--TT-
T ss_pred hhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEEe--------------cCcc--eEE------------------c--CC-
Confidence 4433 35789999999999999 9999999410 0000 000 0 11
Q ss_pred eeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEeccCch
Q 045407 326 KLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPD 364 (382)
Q Consensus 326 ~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~ 364 (382)
. .+..+.|++.+|+++|++|||+.+.+..-.+|.
T Consensus 227 ~-----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~ 260 (289)
T 2g72_A 227 A-----RLTVVPVSEEEVREALVRSGYKVRDLRTYIMPA 260 (289)
T ss_dssp E-----EEECCCCCHHHHHHHHHHTTEEEEEEEEEECCG
T ss_pred e-----eeeeccCCHHHHHHHHHHcCCeEEEeeEeeccc
Confidence 0 122467899999999999999999886544433
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=140.64 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=108.8
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC-------------CC------------C
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA-------------DG------------Y 166 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~-------------d~------------~ 166 (382)
..+.+|||+|||||.++..+++.++ .+|+|+|+|+.||+.|+++....-.. .+ .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3356899999999999999999986 47999999999999999875321000 00 0
Q ss_pred cce-EEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch
Q 045407 167 SRI-SLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS 245 (382)
Q Consensus 167 ~RI-~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S 245 (382)
.+| .++++|+.++.. + .....++||+|++.+ +
T Consensus 134 ~~v~~~~~~d~~~~~~----------------~------------------------------~~~~~~~fD~v~~~~-~ 166 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQP----------------L------------------------------GGVSLPPADCLLSTL-C 166 (265)
T ss_dssp HHEEEEEECCTTSSST----------------T------------------------------TTCCCCCEEEEEEES-C
T ss_pred hhheeEEEeeeccCCC----------------C------------------------------CccccCCccEEEEhh-h
Confidence 137 889999877541 0 001136799999876 3
Q ss_pred hcccC-ChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeeccc
Q 045407 246 CCCLH-KRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQ 324 (382)
Q Consensus 246 ~~yL~-~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~ 324 (382)
+.+++ ...+...+|++++++|+ |||+||+-...+ ++ +... +.
T Consensus 167 l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~-------------~~--~~~~---------------------~~ 209 (265)
T 2i62_A 167 LDAACPDLPAYRTALRNLGSLLK-PGGFLVMVDALK-------------SS--YYMI---------------------GE 209 (265)
T ss_dssp HHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESS-------------CC--EEEE---------------------TT
T ss_pred hhhhcCChHHHHHHHHHHHhhCC-CCcEEEEEecCC-------------Cc--eEEc---------------------CC
Confidence 33332 56789999999999999 999999954211 11 1110 11
Q ss_pred ceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEe
Q 045407 325 KKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 325 ~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~ 359 (382)
..+..+.++.+++.++|++|||+.+.+..
T Consensus 210 ------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 210 ------QKFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp ------EEEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ------ccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 01122567899999999999999988754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=141.79 Aligned_cols=149 Identities=13% Similarity=0.229 Sum_probs=106.0
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
....+|||+|||||.++..|++.. ..+|+|+|+|+.||+.|+++... .+ -..+|.++++|+.+++
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~-~~--~~~~v~~~~~d~~~~~----------- 99 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEE-LG--VSERVHFIHNDAAGYV----------- 99 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHH-TT--CTTTEEEEESCCTTCC-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh-cC--CCcceEEEECChHhCC-----------
Confidence 334689999999999999999874 24799999999999999988532 11 1137999999997765
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+ ...||+|+|.. ++.++. +...+|+.++++|+ |||
T Consensus 100 ---------------------------------------~-~~~fD~V~~~~-~~~~~~---~~~~~l~~~~r~Lk-pgG 134 (256)
T 1nkv_A 100 ---------------------------------------A-NEKCDVAACVG-ATWIAG---GFAGAEELLAQSLK-PGG 134 (256)
T ss_dssp ---------------------------------------C-SSCEEEEEEES-CGGGTS---SSHHHHHHHTTSEE-EEE
T ss_pred ---------------------------------------c-CCCCCEEEECC-ChHhcC---CHHHHHHHHHHHcC-CCe
Confidence 1 36799999954 555554 46888999999999 999
Q ss_pred EEEE-ecc-CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHH
Q 045407 272 IFVM-DLY-GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEE 349 (382)
Q Consensus 272 iFVf-Dl~-gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Lee 349 (382)
++++ +.. ...+....+ .+ .|. .. ...+++++.++..+|++
T Consensus 135 ~l~~~~~~~~~~~~~~~~--~~-------~~~--------------------~~---------~~~~~~~~~~~~~~l~~ 176 (256)
T 1nkv_A 135 IMLIGEPYWRQLPATEEI--AQ-------ACG--------------------VS---------STSDFLTLPGLVGAFDD 176 (256)
T ss_dssp EEEEEEEEETTCCSSHHH--HH-------TTT--------------------CS---------CGGGSCCHHHHHHHHHT
T ss_pred EEEEecCcccCCCChHHH--HH-------HHh--------------------cc---------cccccCCHHHHHHHHHH
Confidence 9998 321 100000000 00 000 00 01257899999999999
Q ss_pred cCCcEEEEE
Q 045407 350 AGFRSVHFW 358 (382)
Q Consensus 350 AGF~~V~v~ 358 (382)
|||+.+.+.
T Consensus 177 aGf~~~~~~ 185 (256)
T 1nkv_A 177 LGYDVVEMV 185 (256)
T ss_dssp TTBCCCEEE
T ss_pred CCCeeEEEE
Confidence 999998874
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=136.13 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=107.9
Q ss_pred CCcccccCCCccHhHHHH-HHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEW-LRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~el-ar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||+|.++..+ ++.| .+|+|+|+|+.||+.|+++.... +.++.++++|+.+++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~------------ 84 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSREN-----NFKLNISKGDIRKLP------------ 84 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHH-----TCCCCEEECCTTSCC------------
T ss_pred CCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhc-----CCceEEEECchhhCC------------
Confidence 467999999999985544 4555 58999999999999999885321 146889999997655
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+...+||+|++.+ ++.|+. .++....++.++++|+ |||+
T Consensus 85 --------------------------------------~~~~~fD~v~~~~-~l~~~~-~~~~~~~l~~~~~~Lk-pgG~ 123 (209)
T 2p8j_A 85 --------------------------------------FKDESMSFVYSYG-TIFHMR-KNDVKEAIDEIKRVLK-PGGL 123 (209)
T ss_dssp --------------------------------------SCTTCEEEEEECS-CGGGSC-HHHHHHHHHHHHHHEE-EEEE
T ss_pred --------------------------------------CCCCceeEEEEcC-hHHhCC-HHHHHHHHHHHHHHcC-CCcE
Confidence 1246799999875 666664 6789999999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|++..+....... ..+.. +|+. .|. . ..+. .....+.|+..|++.+|+++||
T Consensus 124 l~~~~~~~~~~~~-------~~~~~-~~~~-~~~--------~----~~~~-------~~~~~~~~~~~e~~~~~~~~g~ 175 (209)
T 2p8j_A 124 ACINFLTTKDERY-------NKGEK-IGEG-EFL--------Q----LERG-------EKVIHSYVSLEEADKYFKDMKV 175 (209)
T ss_dssp EEEEEEETTSTTT-------TCSEE-EETT-EEE--------E----CC-C-------CCEEEEEECHHHHHHTTTTSEE
T ss_pred EEEEEecccchhc-------cchhh-hccc-cce--------e----ccCC-------CceeEEecCHHHHHHHHhhcCc
Confidence 9997764221100 01111 1211 000 0 0011 1112378999999999999999
Q ss_pred cEEEE
Q 045407 353 RSVHF 357 (382)
Q Consensus 353 ~~V~v 357 (382)
.....
T Consensus 176 ~~~~~ 180 (209)
T 2p8j_A 176 LFKED 180 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 77665
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-16 Score=143.58 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=108.1
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..+++.+ .+|+|+|+|+.||+.|+++. .++.++++|+.+++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~------------ 113 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNY---------PHLHFDVADARNFR------------ 113 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTCC------------
T ss_pred CCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhCC------------
Confidence 35689999999999999999965 58999999999999999874 26889999987655
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ ..+||+|++.. ++.|+. +....|+.++++|+ |||+
T Consensus 114 -----~----------------------------------~~~fD~v~~~~-~l~~~~---d~~~~l~~~~~~Lk-pgG~ 149 (279)
T 3ccf_A 114 -----V----------------------------------DKPLDAVFSNA-MLHWVK---EPEAAIASIHQALK-SGGR 149 (279)
T ss_dssp -----C----------------------------------SSCEEEEEEES-CGGGCS---CHHHHHHHHHHHEE-EEEE
T ss_pred -----c----------------------------------CCCcCEEEEcc-hhhhCc---CHHHHHHHHHHhcC-CCcE
Confidence 1 35799999864 666665 45688999999999 9999
Q ss_pred EEEeccCCCchhhhh-HhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 273 FVMDLYGGTSSEQKL-RLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 273 FVfDl~gg~s~e~kl-~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|++...+........ ......... -|. + . .....++.++..+++.+|++||
T Consensus 150 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~-----------------~------~~~~~~~~~~~~~~~~~l~~aG 201 (279)
T 3ccf_A 150 FVAEFGGKGNIKYILEALYNALETL--GIH---N-----------------P------QALNPWYFPSIGEYVNILEKQG 201 (279)
T ss_dssp EEEEEECTTTTHHHHHHHHHHHHHH--TCC---C-----------------G------GGGCCCCCCCHHHHHHHHHHHT
T ss_pred EEEEecCCcchHHHHHHHHHHHHhc--CCc---c-----------------c------cCcCceeCCCHHHHHHHHHHcC
Confidence 999776432211000 000000000 000 0 0 0112346889999999999999
Q ss_pred CcEEEEEe
Q 045407 352 FRSVHFWL 359 (382)
Q Consensus 352 F~~V~v~~ 359 (382)
|+.+.+..
T Consensus 202 f~~~~~~~ 209 (279)
T 3ccf_A 202 FDVTYAAL 209 (279)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 99988653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-17 Score=147.31 Aligned_cols=119 Identities=17% Similarity=0.163 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+..++.....-..+.+|||+|||||.++..+++.++..+|+|+|+|+.|++.|+++... .+..++.++++|+.+
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~~d~~~ 98 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK----NGIKNVKFLQANIFS 98 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH----TTCCSEEEEECCGGG
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cCCCCcEEEEccccc
Confidence 3444444432222335689999999999999999998778999999999999999998532 122479999999876
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
++ +...+||+|++.+ ++.++.+. ...
T Consensus 99 ~~--------------------------------------------------~~~~~fD~v~~~~-~l~~~~~~---~~~ 124 (276)
T 3mgg_A 99 LP--------------------------------------------------FEDSSFDHIFVCF-VLEHLQSP---EEA 124 (276)
T ss_dssp CC--------------------------------------------------SCTTCEEEEEEES-CGGGCSCH---HHH
T ss_pred CC--------------------------------------------------CCCCCeeEEEEec-hhhhcCCH---HHH
Confidence 55 1246799999875 66666554 578
Q ss_pred HHHHHhhccCCCcEEEEe
Q 045407 259 FKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfD 276 (382)
++.+++.|+ |||+|++-
T Consensus 125 l~~~~~~L~-pgG~l~~~ 141 (276)
T 3mgg_A 125 LKSLKKVLK-PGGTITVI 141 (276)
T ss_dssp HHHHHHHEE-EEEEEEEE
T ss_pred HHHHHHHcC-CCcEEEEE
Confidence 999999999 99999983
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-16 Score=141.04 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|+++. .++.++++|+.+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~----------- 91 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---------PNTNFGKADLATWK----------- 91 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---------TTSEEEECCTTTCC-----------
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------CCcEEEECChhhcC-----------
Confidence 3456899999999999999999955468999999999999999872 36889999986543
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
....||+|++.. ++.|+. +....|++++++|+ |||
T Consensus 92 ----------------------------------------~~~~fD~v~~~~-~l~~~~---~~~~~l~~~~~~L~-pgG 126 (259)
T 2p35_A 92 ----------------------------------------PAQKADLLYANA-VFQWVP---DHLAVLSQLMDQLE-SGG 126 (259)
T ss_dssp ----------------------------------------CSSCEEEEEEES-CGGGST---THHHHHHHHGGGEE-EEE
T ss_pred ----------------------------------------ccCCcCEEEEeC-chhhCC---CHHHHHHHHHHhcC-CCe
Confidence 035699999864 666664 56789999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
+|++-..+
T Consensus 127 ~l~~~~~~ 134 (259)
T 2p35_A 127 VLAVQMPD 134 (259)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCC
Confidence 99996643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=139.26 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=109.1
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~ 188 (382)
.+-..+.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... + -..++.++++|+.+++
T Consensus 57 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~--~~~~~~~~~~d~~~~~-------- 124 (273)
T 3bus_A 57 LDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAA-G--LANRVTFSYADAMDLP-------- 124 (273)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHT-T--CTTTEEEEECCTTSCC--------
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhc-C--CCcceEEEECccccCC--------
Confidence 333335689999999999999999874 358999999999999999885321 1 1237999999997765
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccC
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
+...+||+|++.. ++.++.+ ...+|+.+++.|+
T Consensus 125 ------------------------------------------~~~~~fD~v~~~~-~l~~~~~---~~~~l~~~~~~L~- 157 (273)
T 3bus_A 125 ------------------------------------------FEDASFDAVWALE-SLHHMPD---RGRALREMARVLR- 157 (273)
T ss_dssp ------------------------------------------SCTTCEEEEEEES-CTTTSSC---HHHHHHHHHTTEE-
T ss_pred ------------------------------------------CCCCCccEEEEec-hhhhCCC---HHHHHHHHHHHcC-
Confidence 1246799999865 6666654 4788999999999
Q ss_pred CCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHH
Q 045407 269 KGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCL 347 (382)
Q Consensus 269 pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~L 347 (382)
|||++++ ++....+..... .. .+..+|. .+ .+.+++++.+++.+|
T Consensus 158 pgG~l~i~~~~~~~~~~~~~--~~---~~~~~~~----------------------------~~-~~~~~~~~~~~~~~l 203 (273)
T 3bus_A 158 PGGTVAIADFVLLAPVEGAK--KE---AVDAFRA----------------------------GG-GVLSLGGIDEYESDV 203 (273)
T ss_dssp EEEEEEEEEEEESSCCCHHH--HH---HHHHHHH----------------------------HH-TCCCCCCHHHHHHHH
T ss_pred CCeEEEEEEeeccCCCChhH--HH---HHHHHHh----------------------------hc-CccCCCCHHHHHHHH
Confidence 9999998 443211110000 00 0000010 00 012579999999999
Q ss_pred HHcCCcEEEEE
Q 045407 348 EEAGFRSVHFW 358 (382)
Q Consensus 348 eeAGF~~V~v~ 358 (382)
++|||+.+.+.
T Consensus 204 ~~aGf~~~~~~ 214 (273)
T 3bus_A 204 RQAELVVTSTV 214 (273)
T ss_dssp HHTTCEEEEEE
T ss_pred HHcCCeEEEEE
Confidence 99999998865
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=150.33 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC------------------------------
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA------------------------------ 163 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~------------------------------ 163 (382)
+.+|||+|||||.++..+++..+..+|+|||+|+.||+.|+++.......
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 45799999999999999999954468999999999999999985331100
Q ss_pred -----------------------C-CCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccc
Q 045407 164 -----------------------D-GYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFT 219 (382)
Q Consensus 164 -----------------------d-~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (382)
. -..+|.|+++|+...... +
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~---------------~--------------------- 170 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDD---------------L--------------------- 170 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHH---------------H---------------------
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccc---------------c---------------------
Confidence 0 002577777776543310 0
Q ss_pred cCCCCCcCccCCCCCCccEEEEccchhcccC---ChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 220 ASSGDNCSKQKSSLPARDIICAFNYSCCCLH---KRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 220 ~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~---~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
..+..+.||+|+|++ ++.|+| ..+++..+|+.++++|+ |||+||+..
T Consensus 171 ---------~~~~~~~fD~I~~~~-vl~~ihl~~~~~~~~~~l~~~~~~Lk-pGG~lil~~ 220 (292)
T 3g07_A 171 ---------VEAQTPEYDVVLCLS-LTKWVHLNWGDEGLKRMFRRIYRHLR-PGGILVLEP 220 (292)
T ss_dssp ---------HTTCCCCEEEEEEES-CHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred ---------ccccCCCcCEEEECh-HHHHhhhcCCHHHHHHHHHHHHHHhC-CCcEEEEec
Confidence 002256799999987 556666 78899999999999999 999999964
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-16 Score=140.40 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=108.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.+. +|+|+|+|+.|++.|+++... .+..++.++++|+.+++
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~------------- 82 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQE----KGVENVRFQQGTAESLP------------- 82 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHH----HTCCSEEEEECBTTBCC-------------
T ss_pred CCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHH----cCCCCeEEEecccccCC-------------
Confidence 46799999999999999999985 799999999999999987532 12236999999986654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....||+|++.. ++.++. +....++.++++|+ |||+|
T Consensus 83 -------------------------------------~~~~~fD~v~~~~-~l~~~~---~~~~~l~~~~~~Lk-pgG~l 120 (239)
T 1xxl_A 83 -------------------------------------FPDDSFDIITCRY-AAHHFS---DVRKAVREVARVLK-QDGRF 120 (239)
T ss_dssp -------------------------------------SCTTCEEEEEEES-CGGGCS---CHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------CCCCcEEEEEECC-chhhcc---CHHHHHHHHHHHcC-CCcEE
Confidence 1246799999875 555654 46788999999999 99999
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
++ |.............. .++. .... .+.+.|+..++.++|++|||
T Consensus 121 ~~~~~~~~~~~~~~~~~~--------~~~~-----------------~~~~---------~~~~~~~~~~~~~ll~~aGf 166 (239)
T 1xxl_A 121 LLVDHYAPEDPVLDEFVN--------HLNR-----------------LRDP---------SHVRESSLSEWQAMFSANQL 166 (239)
T ss_dssp EEEEECBCSSHHHHHHHH--------HHHH-----------------HHCT---------TCCCCCBHHHHHHHHHHTTE
T ss_pred EEEEcCCCCChhHHHHHH--------HHHH-----------------hccc---------cccCCCCHHHHHHHHHHCCC
Confidence 98 655322211100000 0000 0001 12367899999999999999
Q ss_pred cEEEEEe
Q 045407 353 RSVHFWL 359 (382)
Q Consensus 353 ~~V~v~~ 359 (382)
+.+.+..
T Consensus 167 ~~~~~~~ 173 (239)
T 1xxl_A 167 AYQDIQK 173 (239)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 9887753
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=135.57 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=102.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++. +|+|+|+.|++.|+++ ++.++++|+.+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~~------------- 97 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------GVFVLKGTAENLP------------- 97 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------TCEEEECBTTBCC-------------
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------CCEEEEcccccCC-------------
Confidence 457999999999999998765 9999999999999986 3678899986654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....||+|++.+ ++.++. +...+++.+++.|+ |||+|
T Consensus 98 -------------------------------------~~~~~fD~v~~~~-~l~~~~---~~~~~l~~~~~~L~-pgG~l 135 (219)
T 1vlm_A 98 -------------------------------------LKDESFDFALMVT-TICFVD---DPERALKEAYRILK-KGGYL 135 (219)
T ss_dssp -------------------------------------SCTTCEEEEEEES-CGGGSS---CHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------CCCCCeeEEEEcc-hHhhcc---CHHHHHHHHHHHcC-CCcEE
Confidence 1245799999875 666664 45789999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++............. .. . . .+. . +..+.+.|+..+++.+|+++||+
T Consensus 136 ~i~~~~~~~~~~~~~-~~-~-------~--------------------~~~-~----~~~~~~~~~~~~l~~~l~~~Gf~ 181 (219)
T 1vlm_A 136 IVGIVDRESFLGREY-EK-N-------K--------------------EKS-V----FYKNARFFSTEELMDLMRKAGFE 181 (219)
T ss_dssp EEEEECSSSHHHHHH-HH-T-------T--------------------TC--C----CSTTCCCCCHHHHHHHHHHTTCE
T ss_pred EEEEeCCccHHHHHH-HH-H-------h--------------------cCc-c----hhcccccCCHHHHHHHHHHCCCe
Confidence 996654332211110 00 0 0 000 0 00123689999999999999999
Q ss_pred EEEEEe
Q 045407 354 SVHFWL 359 (382)
Q Consensus 354 ~V~v~~ 359 (382)
.+.+.-
T Consensus 182 ~~~~~~ 187 (219)
T 1vlm_A 182 EFKVVQ 187 (219)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=139.48 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=88.2
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+.+++..+.. .+.+|||+|||||.++..|++.|. +|+|+|+|+.||+.|+++.. . .++++|+.++
T Consensus 43 ~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~---------~-~~~~~d~~~~ 108 (260)
T 2avn_A 43 LIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV---------K-NVVEAKAEDL 108 (260)
T ss_dssp HHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC---------S-CEEECCTTSC
T ss_pred HHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC---------C-CEEECcHHHC
Confidence 34555555543 356899999999999999999974 79999999999999999852 1 2788898765
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
+ +...+||+|++.+..+.+..+ ....|
T Consensus 109 ~--------------------------------------------------~~~~~fD~v~~~~~~~~~~~~---~~~~l 135 (260)
T 2avn_A 109 P--------------------------------------------------FPSGAFEAVLALGDVLSYVEN---KDKAF 135 (260)
T ss_dssp C--------------------------------------------------SCTTCEEEEEECSSHHHHCSC---HHHHH
T ss_pred C--------------------------------------------------CCCCCEEEEEEcchhhhcccc---HHHHH
Confidence 5 124679999997655555443 78899
Q ss_pred HHHHhhccCCCcEEEEeccC
Q 045407 260 KHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl~g 279 (382)
+.++++|+ |||+||+.+.+
T Consensus 136 ~~~~~~Lk-pgG~l~~~~~~ 154 (260)
T 2avn_A 136 SEIRRVLV-PDGLLIATVDN 154 (260)
T ss_dssp HHHHHHEE-EEEEEEEEEEB
T ss_pred HHHHHHcC-CCeEEEEEeCC
Confidence 99999999 99999998765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-16 Score=144.73 Aligned_cols=148 Identities=13% Similarity=0.025 Sum_probs=106.6
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..++++ + .+|+|||+|++|++.|+++... .+ -..++.++++|+.+++
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~-~~--~~~~v~~~~~d~~~~~------------ 180 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARE-LR--IDDHVRSRVCNMLDTP------------ 180 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHH-TT--CTTTEEEEECCTTSCC------------
T ss_pred CCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH-cC--CCCceEEEECChhcCC------------
Confidence 468999999999999999998 6 4799999999999999998533 11 1137999999997765
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+....||+|++. .++.|+ + ...+|+.++++|+ |||+
T Consensus 181 --------------------------------------~~~~~fD~V~~~-~~l~~~-~---~~~~l~~~~~~Lk-pgG~ 216 (312)
T 3vc1_A 181 --------------------------------------FDKGAVTASWNN-ESTMYV-D---LHDLFSEHSRFLK-VGGR 216 (312)
T ss_dssp --------------------------------------CCTTCEEEEEEE-SCGGGS-C---HHHHHHHHHHHEE-EEEE
T ss_pred --------------------------------------CCCCCEeEEEEC-CchhhC-C---HHHHHHHHHHHcC-CCcE
Confidence 224679999985 467776 3 8899999999999 9999
Q ss_pred EEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 273 FVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 273 FVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
||+ +....... ....-+|.. +.+ .+...+++..+++.+|++||
T Consensus 217 l~~~~~~~~~~~----------~~~~~~~~~------------------------~~~--~~~~~~~s~~~~~~~l~~aG 260 (312)
T 3vc1_A 217 YVTITGCWNPRY----------GQPSKWVSQ------------------------INA--HFECNIHSRREYLRAMADNR 260 (312)
T ss_dssp EEEEEEEECTTT----------CSCCHHHHH------------------------HHH--HHTCCCCBHHHHHHHHHTTT
T ss_pred EEEEEccccccc----------cchhHHHHH------------------------HHh--hhcCCCCCHHHHHHHHHHCC
Confidence 998 32211100 000000000 000 01124789999999999999
Q ss_pred CcEEEEE
Q 045407 352 FRSVHFW 358 (382)
Q Consensus 352 F~~V~v~ 358 (382)
|+.+.+.
T Consensus 261 f~~~~~~ 267 (312)
T 3vc1_A 261 LVPHTIV 267 (312)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9998874
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=139.37 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=84.7
Q ss_pred CCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..+.+|||+|||+|.++..|++. + .+|+|||+|+.||+.|+++.... + ...++.++++|+.+++
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-~--~~~~~~~~~~d~~~~~---------- 145 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQA-G--LADNITVKYGSFLEIP---------- 145 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHH-T--CTTTEEEEECCTTSCS----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhc-C--CCcceEEEEcCcccCC----------
Confidence 33568999999999999999998 5 47999999999999999875321 1 1247999999997765
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+...+||+|++.. ++.++.+ ...+|+.++++|+ ||
T Consensus 146 ----------------------------------------~~~~~fD~v~~~~-~l~~~~~---~~~~l~~~~~~Lk-pg 180 (297)
T 2o57_A 146 ----------------------------------------CEDNSYDFIWSQD-AFLHSPD---KLKVFQECARVLK-PR 180 (297)
T ss_dssp ----------------------------------------SCTTCEEEEEEES-CGGGCSC---HHHHHHHHHHHEE-EE
T ss_pred ----------------------------------------CCCCCEeEEEecc-hhhhcCC---HHHHHHHHHHHcC-CC
Confidence 2246799999875 6666655 6889999999999 99
Q ss_pred cEEEEe
Q 045407 271 GIFVMD 276 (382)
Q Consensus 271 GiFVfD 276 (382)
|+||+-
T Consensus 181 G~l~~~ 186 (297)
T 2o57_A 181 GVMAIT 186 (297)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999983
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-15 Score=138.44 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=117.7
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc---CCCCcceEEEeccCCCchhhhhcccch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG---ADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~---~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
.+.+|||+|||||.++..|++.+. .+|+|+|+|+.||+.|+++...... .....++.++++|+.++++..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~------ 106 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRI-NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLID------ 106 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTT------
T ss_pred CCCEEEEECCCCcHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhh------
Confidence 356899999999999999998653 5899999999999999997532100 001237999999997765100
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCC--CCCccEEEEccchhccc-CChhHHHHHHHHHHhhc
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS--LPARDIICAFNYSCCCL-HKRADLVLYFKHVLHAL 266 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fDiV~afn~S~~yL-~~r~dL~~yFr~V~~~L 266 (382)
.+. ..+||+|+|.+ ++.|+ .+.+++...|++++++|
T Consensus 107 ----------------------------------------~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L 145 (313)
T 3bgv_A 107 ----------------------------------------KFRDPQMCFDICSCQF-VCHYSFESYEQADMMLRNACERL 145 (313)
T ss_dssp ----------------------------------------TCSSTTCCEEEEEEET-CGGGGGGSHHHHHHHHHHHHTTE
T ss_pred ----------------------------------------hcccCCCCEEEEEEec-chhhccCCHHHHHHHHHHHHHHh
Confidence 011 24799999976 66665 77788999999999999
Q ss_pred cCCCcEEEEeccCCCchhhhhHhhh--ccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHH
Q 045407 267 SKKGGIFVMDLYGGTSSEQKLRLQR--RFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIK 344 (382)
Q Consensus 267 ~~pGGiFVfDl~gg~s~e~kl~~~R--~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~ 344 (382)
+ |||+||+.+.+.......+.... .+.+-.|.+.-...+.... .-....|.+. ........+++.+++.
T Consensus 146 k-pgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~f~l~-------~~~~~~~~~~~~~~~~ 216 (313)
T 3bgv_A 146 S-PGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPL-FGCKYDFNLE-------GVVDVPEFLVYFPLLN 216 (313)
T ss_dssp E-EEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCS-SCCEEEEEEC----------CCEEECCCHHHHH
T ss_pred C-CCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCC-ccceEEEEEC-------CcccCcceEEcHHHHH
Confidence 9 99999998776432211111100 0111011110000000000 0001112110 0011224678999999
Q ss_pred HHHHHcCCcEEEEE
Q 045407 345 DCLEEAGFRSVHFW 358 (382)
Q Consensus 345 d~LeeAGF~~V~v~ 358 (382)
++|+++||+.+.+.
T Consensus 217 ~l~~~~G~~~v~~~ 230 (313)
T 3bgv_A 217 EMAKKYNMKLVYKK 230 (313)
T ss_dssp HHGGGGTEEEEEEE
T ss_pred HHHHHcCcEEEEec
Confidence 99999999999864
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=133.73 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=82.8
Q ss_pred CCcccccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..+++ .| .+|+|||+|++|++.|+++... .+ ...++.++++|+.++
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~-~~--~~~~~~~~~~d~~~~------------- 126 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVAN-SE--NLRSKRVLLAGWEQF------------- 126 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT-CC--CCSCEEEEESCGGGC-------------
T ss_pred cCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh-cC--CCCCeEEEECChhhC-------------
Confidence 46899999999999999994 45 3899999999999999998532 11 124799999997432
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.++||+|++.. ++.++.. ++...+|+.+++.|+ |||+
T Consensus 127 ----------------------------------------~~~fD~v~~~~-~l~~~~~-~~~~~~l~~~~~~Lk-pgG~ 163 (287)
T 1kpg_A 127 ----------------------------------------DEPVDRIVSIG-AFEHFGH-ERYDAFFSLAHRLLP-ADGV 163 (287)
T ss_dssp ----------------------------------------CCCCSEEEEES-CGGGTCT-TTHHHHHHHHHHHSC-TTCE
T ss_pred ----------------------------------------CCCeeEEEEeC-chhhcCh-HHHHHHHHHHHHhcC-CCCE
Confidence 15699999876 6676643 577899999999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+++...
T Consensus 164 l~~~~~ 169 (287)
T 1kpg_A 164 MLLHTI 169 (287)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999544
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=146.94 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccc----cCCCCcceEEEeccCCCchhhhhcccc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKV----GADGYSRISLFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl----~~d~~~RI~l~~gDV~~~~~~~~~~~~ 188 (382)
+.+|||+|||||.++..|++.. +..+|+|+|+|+.||++|+++..... +.....+|.++++|+.++..
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~------- 156 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT------- 156 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG-------
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhh-------
Confidence 4579999999999999999873 56789999999999999998742210 10112479999999987631
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccC
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
+ ....+....||+|++.+ ++.++. +...+|+.++++|+
T Consensus 157 ---------~----------------------------~~~~~~~~~fD~V~~~~-~l~~~~---d~~~~l~~~~r~Lk- 194 (383)
T 4fsd_A 157 ---------A----------------------------EPEGVPDSSVDIVISNC-VCNLST---NKLALFKEIHRVLR- 194 (383)
T ss_dssp ---------C----------------------------BSCCCCTTCEEEEEEES-CGGGCS---CHHHHHHHHHHHEE-
T ss_pred ---------c----------------------------ccCCCCCCCEEEEEEcc-chhcCC---CHHHHHHHHHHHcC-
Confidence 0 00012346799999875 666665 45789999999999
Q ss_pred CCcEEEE-eccC
Q 045407 269 KGGIFVM-DLYG 279 (382)
Q Consensus 269 pGGiFVf-Dl~g 279 (382)
|||+|++ |++.
T Consensus 195 pgG~l~i~~~~~ 206 (383)
T 4fsd_A 195 DGGELYFSDVYA 206 (383)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCCEEEEEEecc
Confidence 9999999 6553
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=130.97 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=108.6
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++. ..++++|+.++.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~~-----------~~~~~~d~~~~~------------ 86 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEKL-----------DHVVLGDIETMD------------ 86 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTTS-----------SEEEESCTTTCC------------
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC-----------CcEEEcchhhcC------------
Confidence 35689999999999999999995 58999999999999998874 257888987643
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ .+...+||+|++.. ++.++.+. ...++.+++.|+ |||+
T Consensus 87 -----~-------------------------------~~~~~~fD~v~~~~-~l~~~~~~---~~~l~~~~~~L~-~gG~ 125 (230)
T 3cc8_A 87 -----M-------------------------------PYEEEQFDCVIFGD-VLEHLFDP---WAVIEKVKPYIK-QNGV 125 (230)
T ss_dssp -----C-------------------------------CSCTTCEEEEEEES-CGGGSSCH---HHHHHHTGGGEE-EEEE
T ss_pred -----C-------------------------------CCCCCccCEEEECC-hhhhcCCH---HHHHHHHHHHcC-CCCE
Confidence 0 02246799999864 66666644 588999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
+++.+.+.......... ..+ .|..... + .. ...+.+.|+..+++++|++|||
T Consensus 126 l~~~~~~~~~~~~~~~~---~~~---~~~~~~~-----------------~--~~---~~~~~~~~~~~~~~~~l~~~Gf 177 (230)
T 3cc8_A 126 ILASIPNVSHISVLAPL---LAG---NWTYTEY-----------------G--LL---DKTHIRFFTFNEMLRMFLKAGY 177 (230)
T ss_dssp EEEEEECTTSHHHHHHH---HTT---CCCCBSS-----------------S--TT---BTTCCCCCCHHHHHHHHHHTTE
T ss_pred EEEEeCCcchHHHHHHH---hcC---CceeccC-----------------C--CC---CcceEEEecHHHHHHHHHHcCC
Confidence 99977543222110000 001 1211000 0 00 0123478999999999999999
Q ss_pred cEEEEEeccC
Q 045407 353 RSVHFWLREM 362 (382)
Q Consensus 353 ~~V~v~~r~~ 362 (382)
+.+++....+
T Consensus 178 ~~~~~~~~~~ 187 (230)
T 3cc8_A 178 SISKVDRVYV 187 (230)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEeccc
Confidence 9998865343
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=136.13 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=83.7
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..+++. |. +|+|||+|++|++.|+++... .+ ...++.++++|+.+++
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~-~~--~~~~v~~~~~d~~~~~------------ 153 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLAS-ID--TNRSRQVLLQGWEDFA------------ 153 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHT-SC--CSSCEEEEESCGGGCC------------
T ss_pred cCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh-cC--CCCceEEEECChHHCC------------
Confidence 468999999999999999988 64 799999999999999998532 11 1136899999974322
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+||+|++.. ++.|+.. ++...+|+.+++.|+ |||+
T Consensus 154 -----------------------------------------~~fD~v~~~~-~l~~~~~-~~~~~~l~~~~~~Lk-pgG~ 189 (318)
T 2fk8_A 154 -----------------------------------------EPVDRIVSIE-AFEHFGH-ENYDDFFKRCFNIMP-ADGR 189 (318)
T ss_dssp -----------------------------------------CCCSEEEEES-CGGGTCG-GGHHHHHHHHHHHSC-TTCE
T ss_pred -----------------------------------------CCcCEEEEeC-hHHhcCH-HHHHHHHHHHHHhcC-CCcE
Confidence 5699999875 6666643 678999999999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
||+...
T Consensus 190 l~~~~~ 195 (318)
T 2fk8_A 190 MTVQSS 195 (318)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=135.07 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=79.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|++..+..+|+|||+|++||+.+.+++..++...+..++.++++|+.+++
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~------------- 94 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP------------- 94 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-------------
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-------------
Confidence 4579999999999999999997667999999999999965443333222334458999999998766
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC--ChhHHHHHHHHHHhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH--KRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~--~r~dL~~yFr~V~~~L~~pGG 271 (382)
+ .... |.|.. ..+++.++ -..+...+|+.++++|+ |||
T Consensus 95 ----~---------------------------------~~~~-d~v~~-~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG 134 (218)
T 3mq2_A 95 ----P---------------------------------LSGV-GELHV-LMPWGSLLRGVLGSSPEMLRGMAAVCR-PGA 134 (218)
T ss_dssp ----S---------------------------------CCCE-EEEEE-ESCCHHHHHHHHTSSSHHHHHHHHTEE-EEE
T ss_pred ----C---------------------------------CCCC-CEEEE-EccchhhhhhhhccHHHHHHHHHHHcC-CCc
Confidence 1 1233 65552 22222211 11223788999999999 999
Q ss_pred EEEEecc
Q 045407 272 IFVMDLY 278 (382)
Q Consensus 272 iFVfDl~ 278 (382)
+|++.+.
T Consensus 135 ~l~~~~~ 141 (218)
T 3mq2_A 135 SFLVALN 141 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=144.57 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=109.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..++++.+..+|+|+|+ ++|++.|+++.... ....||.++.+|+.++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~------------- 242 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL---SGSERIHGHGANLLDRD------------- 242 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC---TTGGGEEEEECCCCSSS-------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc---CcccceEEEEccccccC-------------
Confidence 56899999999999999999988889999999 99999999985321 11248999999997752
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .+ ...||+|++.+ ++.++ ..++....|++++++|+ |||.+
T Consensus 243 ----~-------------------------------~~-p~~~D~v~~~~-vlh~~-~~~~~~~~l~~~~~~L~-pgG~l 283 (363)
T 3dp7_A 243 ----V-------------------------------PF-PTGFDAVWMSQ-FLDCF-SEEEVISILTRVAQSIG-KDSKV 283 (363)
T ss_dssp ----C-------------------------------CC-CCCCSEEEEES-CSTTS-CHHHHHHHHHHHHHHCC-TTCEE
T ss_pred ----C-------------------------------CC-CCCcCEEEEec-hhhhC-CHHHHHHHHHHHHHhcC-CCcEE
Confidence 0 01 24799999876 33333 45678899999999999 99988
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|+ |...+......... .|.....+. .. ...+ ..|.|+.+|++++|++|||
T Consensus 284 ~i~e~~~~~~~~~~~~~---------~~~~~~~~~---------~~-~~~~----------~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 284 YIMETLWDRQRYETASY---------CLTQISLYF---------TA-MANG----------NSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp EEEECCTTSCSSHHHHH---------HHHHHHHHH---------HH-SSCS----------SCCSCCHHHHHHHHHTTTE
T ss_pred EEEeeccCCccccchhh---------HHHHhhhhH---------Hh-hhCC----------CCcccCHHHHHHHHHHcCC
Confidence 66 65432211100000 000000000 00 0001 1267899999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.+.++
T Consensus 335 ~~v~~~ 340 (363)
T 3dp7_A 335 EVEEIQ 340 (363)
T ss_dssp EESCCC
T ss_pred eEEEEE
Confidence 998886
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=140.02 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=80.6
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~ 188 (382)
.+...+.+|||+|||||.++..+++.+ .+|+|+|+|+.|++.|+++. ++.++++|+.+++
T Consensus 30 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~----------~~~~~~~d~~~~~-------- 89 (261)
T 3ege_A 30 LNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVHP----------QVEWFTGYAENLA-------- 89 (261)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCCT----------TEEEECCCTTSCC--------
T ss_pred hCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhcc----------CCEEEECchhhCC--------
Confidence 333446789999999999999999976 57999999999998776552 7899999997765
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccC
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
+...+||+|++.+ ++.++ .+...+|++++++|+
T Consensus 90 ------------------------------------------~~~~~fD~v~~~~-~l~~~---~~~~~~l~~~~~~Lk- 122 (261)
T 3ege_A 90 ------------------------------------------LPDKSVDGVISIL-AIHHF---SHLEKSFQEMQRIIR- 122 (261)
T ss_dssp ------------------------------------------SCTTCBSEEEEES-CGGGC---SSHHHHHHHHHHHBC-
T ss_pred ------------------------------------------CCCCCEeEEEEcc-hHhhc---cCHHHHHHHHHHHhC-
Confidence 2246799999986 45555 466789999999996
Q ss_pred CCc-EEEEecc
Q 045407 269 KGG-IFVMDLY 278 (382)
Q Consensus 269 pGG-iFVfDl~ 278 (382)
|| ++|++..
T Consensus 123 -gG~~~~~~~~ 132 (261)
T 3ege_A 123 -DGTIVLLTFD 132 (261)
T ss_dssp -SSCEEEEEEC
T ss_pred -CcEEEEEEcC
Confidence 88 5555653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=134.71 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=108.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|+|+|||||.++..+++..+..+++|+|+ +.|++.|+++.... .-..||.+..+|+.++.
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~------------- 232 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT---GLSGRAQVVVGSFFDPL------------- 232 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT---TCTTTEEEEECCTTSCC-------------
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc---CcCcCeEEecCCCCCCC-------------
Confidence 46899999999999999999988889999999 99999999875321 11258999999986432
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...||+|++.+ ++.|+. .++....+++++++|+ |||.+
T Consensus 233 ---------------------------------------p~~~D~v~~~~-vlh~~~-~~~~~~~l~~~~~~L~-pgG~l 270 (332)
T 3i53_A 233 ---------------------------------------PAGAGGYVLSA-VLHDWD-DLSAVAILRRCAEAAG-SGGVV 270 (332)
T ss_dssp ---------------------------------------CCSCSEEEEES-CGGGSC-HHHHHHHHHHHHHHHT-TTCEE
T ss_pred ---------------------------------------CCCCcEEEEeh-hhccCC-HHHHHHHHHHHHHhcC-CCCEE
Confidence 22799999987 444444 4568999999999999 99998
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
++ |...... . +. ..+|.. ++ .....+.++..|++++|++|||
T Consensus 271 ~i~e~~~~~~-~---------~~-------~~~d~~-----------------~~---~~~~~~~~t~~e~~~ll~~aGf 313 (332)
T 3i53_A 271 LVIEAVAGDE-H---------AG-------TGMDLR-----------------ML---TYFGGKERSLAELGELAAQAGL 313 (332)
T ss_dssp EEEECCCC-------------CC-------HHHHHH-----------------HH---HHHSCCCCCHHHHHHHHHHTTE
T ss_pred EEEeecCCCC-C---------cc-------HHHHHH-----------------HH---hhCCCCCCCHHHHHHHHHHCCC
Confidence 77 5542211 0 00 011110 00 0011257899999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.++++
T Consensus 314 ~~~~~~ 319 (332)
T 3i53_A 314 AVRAAH 319 (332)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999987
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-15 Score=126.59 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+...++..++ ....+|||+|||||.++..|++++ .+|+|||+|++||+.|+++... .+..++.++++++..
T Consensus 10 ~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~----~~~~~v~~~~~~~~~ 81 (185)
T 3mti_A 10 HMSHDFLAEVL--DDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSD----LGIENTELILDGHEN 81 (185)
T ss_dssp HHHHHHHHTTC--CTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH----HTCCCEEEEESCGGG
T ss_pred HHHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH----cCCCcEEEEeCcHHH
Confidence 44555555433 223579999999999999999995 5799999999999999998643 122478999977755
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC--------
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH-------- 250 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~-------- 250 (382)
+.. +...+||+|++.. .|++
T Consensus 82 l~~-------------------------------------------------~~~~~fD~v~~~~---~~~~~~~~~~~~ 109 (185)
T 3mti_A 82 LDH-------------------------------------------------YVREPIRAAIFNL---GYLPSADKSVIT 109 (185)
T ss_dssp GGG-------------------------------------------------TCCSCEEEEEEEE---C-----------
T ss_pred HHh-------------------------------------------------hccCCcCEEEEeC---CCCCCcchhccc
Confidence 431 1145699996542 4444
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEEeccCC
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg 280 (382)
...+....++.+++.|+ |||+|++-++.+
T Consensus 110 ~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~ 138 (185)
T 3mti_A 110 KPHTTLEAIEKILDRLE-VGGRLAIMIYYG 138 (185)
T ss_dssp CHHHHHHHHHHHHHHEE-EEEEEEEEEC--
T ss_pred ChhhHHHHHHHHHHhcC-CCcEEEEEEeCC
Confidence 44677888999999999 999999977754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-15 Score=134.39 Aligned_cols=176 Identities=10% Similarity=0.006 Sum_probs=107.0
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHH------HHHHHHHhccccccCCCCcceEEEe
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLE------ALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~e------mL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
+..++.. .+-....+|||+|||+|.++..+++. |+..+|+|+|+|+. |++.|+++.... ....+|.+++
T Consensus 32 ~~~l~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~---~~~~~v~~~~ 107 (275)
T 3bkx_A 32 RLAIAEA-WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG---PLGDRLTVHF 107 (275)
T ss_dssp HHHHHHH-HTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS---TTGGGEEEEC
T ss_pred HHHHHHH-cCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc---CCCCceEEEE
Confidence 3444443 23333568999999999999999998 56678999999997 999999985321 1114799999
Q ss_pred cc-CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 174 GN-VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 174 gD-V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
+| ++... + .+...+||+|++.. ++.|+.+.
T Consensus 108 ~d~~~~~~-----------------~-------------------------------~~~~~~fD~v~~~~-~l~~~~~~ 138 (275)
T 3bkx_A 108 NTNLSDDL-----------------G-------------------------------PIADQHFDRVVLAH-SLWYFASA 138 (275)
T ss_dssp SCCTTTCC-----------------G-------------------------------GGTTCCCSEEEEES-CGGGSSCH
T ss_pred CChhhhcc-----------------C-------------------------------CCCCCCEEEEEEcc-chhhCCCH
Confidence 98 43222 0 01246799999765 66777765
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEe-ccCCCchhhhhH-hhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeee
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVMD-LYGGTSSEQKLR-LQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHA 330 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVfD-l~gg~s~e~kl~-~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~ 330 (382)
.. +..+++.|.||||++++- +........... ..... ....|.. +. ..+
T Consensus 139 ~~----~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~--------------~~~------- 189 (275)
T 3bkx_A 139 NA----LALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAM--IQGLLYA--IA--------------PSD------- 189 (275)
T ss_dssp HH----HHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHH--HHHHHHH--HS--------------CCT-------
T ss_pred HH----HHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHH--HHHHHhh--cc--------------ccc-------
Confidence 43 344445555479999994 332111100000 00000 0000000 00 000
Q ss_pred eeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 331 FSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 331 fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
....++++++.+++.+|++|||+.+++.
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~ 217 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGT 217 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEE
Confidence 0123468999999999999999998864
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=134.48 Aligned_cols=132 Identities=12% Similarity=0.028 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCc---cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGT---ALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGT---G~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
.|+.+..........+.+|||+|||| |.++..+++..+..+|+|||+|+.||+.|+++.. ...++.++++|
T Consensus 63 ~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~------~~~~v~~~~~D 136 (274)
T 2qe6_A 63 KVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA------KDPNTAVFTAD 136 (274)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT------TCTTEEEEECC
T ss_pred HHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC------CCCCeEEEEee
Confidence 34444443222122246899999999 9988777787777899999999999999999852 12479999999
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL 255 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL 255 (382)
++++.+. .....+ ...+...+||+|++.+ ++.|+.+. +.
T Consensus 137 ~~~~~~~----------~~~~~~-----------------------------~~~~d~~~~d~v~~~~-vlh~~~d~-~~ 175 (274)
T 2qe6_A 137 VRDPEYI----------LNHPDV-----------------------------RRMIDFSRPAAIMLVG-MLHYLSPD-VV 175 (274)
T ss_dssp TTCHHHH----------HHSHHH-----------------------------HHHCCTTSCCEEEETT-TGGGSCTT-TH
T ss_pred CCCchhh----------hccchh-----------------------------hccCCCCCCEEEEEec-hhhhCCcH-HH
Confidence 9987631 000000 0002235799998764 77777765 78
Q ss_pred HHHHHHHHhhccCCCcEEEEecc
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
...|++++++|+ |||+|++...
T Consensus 176 ~~~l~~~~~~L~-pGG~l~i~~~ 197 (274)
T 2qe6_A 176 DRVVGAYRDALA-PGSYLFMTSL 197 (274)
T ss_dssp HHHHHHHHHHSC-TTCEEEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEEEEe
Confidence 999999999999 9999999554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=128.56 Aligned_cols=130 Identities=11% Similarity=0.053 Sum_probs=96.3
Q ss_pred HHHHHhhcCChhhHHHHHHHHHH-hhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC
Q 045407 85 LLYQQSVQSPKGDISYLQKFFLI-YVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA 163 (382)
Q Consensus 85 ~LYd~~vq~p~~Di~yl~~~f~~-y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~ 163 (382)
..|+.....+..-...+...+.. ......+.+|||+|||||.++..+++.+ .+|+|+|+|+.|++.|+++. .
T Consensus 10 ~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~-~---- 82 (263)
T 2yqz_A 10 YAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG--YRYIALDADAAMLEVFRQKI-A---- 82 (263)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT--CEEEEEESCHHHHHHHHHHT-T----
T ss_pred HHHhhhcccChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh-h----
Confidence 46777765444444444444421 1122335689999999999999999987 47999999999999999985 1
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
....++.++++|+.+++ +....||+|++.+
T Consensus 83 ~~~~~~~~~~~d~~~~~--------------------------------------------------~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 83 GVDRKVQVVQADARAIP--------------------------------------------------LPDESVHGVIVVH 112 (263)
T ss_dssp TSCTTEEEEESCTTSCC--------------------------------------------------SCTTCEEEEEEES
T ss_pred ccCCceEEEEcccccCC--------------------------------------------------CCCCCeeEEEECC
Confidence 12357999999987654 1246799999865
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
++.++. +....++.++++|+ |||++++-
T Consensus 113 -~l~~~~---~~~~~l~~~~~~L~-pgG~l~~~ 140 (263)
T 2yqz_A 113 -LWHLVP---DWPKVLAEAIRVLK-PGGALLEG 140 (263)
T ss_dssp -CGGGCT---THHHHHHHHHHHEE-EEEEEEEE
T ss_pred -chhhcC---CHHHHHHHHHHHCC-CCcEEEEE
Confidence 566655 56789999999999 99999987
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=136.96 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=123.5
Q ss_pred CCCchHHHHHHhhcCChhhHHHHHHHHHHhhCC--CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 79 DMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGG--RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 79 ~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~gg--r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|.....|...|..... ..+..+...+ .. ..+.+|||+|||||.++..+++..+..+++|+|+| .|++.|+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~ 207 (335)
T 2r3s_A 132 PEHPVWVQFAKAMSPMMA--NPAQLIAQLV-NENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKEN 207 (335)
T ss_dssp TTCTHHHHHHHHSGGGGH--HHHHHHHHHH-TC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh--hhHHHHHHhc-ccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHH
Confidence 345667777776643222 2233444433 22 34578999999999999999999766799999999 999999987
Q ss_pred ccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCc
Q 045407 157 NLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPAR 236 (382)
Q Consensus 157 ~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 236 (382)
.... + -..+|.++++|+.+++ + ...|
T Consensus 208 ~~~~-~--~~~~v~~~~~d~~~~~-----------------~----------------------------------~~~~ 233 (335)
T 2r3s_A 208 ARIQ-G--VASRYHTIAGSAFEVD-----------------Y----------------------------------GNDY 233 (335)
T ss_dssp HHHH-T--CGGGEEEEESCTTTSC-----------------C----------------------------------CSCE
T ss_pred HHhc-C--CCcceEEEecccccCC-----------------C----------------------------------CCCC
Confidence 5321 1 1247999999997654 1 2349
Q ss_pred cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE-EeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEE
Q 045407 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV-MDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRIS 315 (382)
Q Consensus 237 DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV-fDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~ 315 (382)
|+|++.+ ++.++ +.++....+++++++|+ |||.++ +|......... + +....++..
T Consensus 234 D~v~~~~-~l~~~-~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~--------~-----~~~~~~~~~------- 290 (335)
T 2r3s_A 234 DLVLLPN-FLHHF-DVATCEQLLRKIKTALA-VEGKVIVFDFIPNSDRIT--------P-----PDAAAFSLV------- 290 (335)
T ss_dssp EEEEEES-CGGGS-CHHHHHHHHHHHHHHEE-EEEEEEEEECCCCTTSSC--------S-----HHHHHHHHH-------
T ss_pred cEEEEcc-hhccC-CHHHHHHHHHHHHHhCC-CCcEEEEEeecCCCCcCC--------c-----hHHHHHHHH-------
Confidence 9999876 55554 44678999999999999 999555 57653211000 0 000000000
Q ss_pred EEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 316 LHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 316 L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
++ ......+.|+..+++++|++|||+.++++
T Consensus 291 ----------~~--~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 291 ----------ML--ATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp ----------HH--HHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred ----------HH--eeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 00 00001267899999999999999999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.1e-15 Score=142.19 Aligned_cols=154 Identities=13% Similarity=0.032 Sum_probs=110.5
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|+|+|||||.++..+++..+..+++|+|+ +.|++.|+++... ..-..+|.++++|+.++.
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~---~~l~~~v~~~~~d~~~~~----------- 265 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTG---RGLADRCEILPGDFFETI----------- 265 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH---TTCTTTEEEEECCTTTCC-----------
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhh---cCcCCceEEeccCCCCCC-----------
Confidence 3357899999999999999999988889999999 9999999987532 111358999999997432
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
...||+|++.+ .+.|+ +.++.+..+++++++|+ |||
T Consensus 266 -----------------------------------------p~~~D~v~~~~-vlh~~-~d~~~~~~L~~~~~~L~-pgG 301 (369)
T 3gwz_A 266 -----------------------------------------PDGADVYLIKH-VLHDW-DDDDVVRILRRIATAMK-PDS 301 (369)
T ss_dssp -----------------------------------------CSSCSEEEEES-CGGGS-CHHHHHHHHHHHHTTCC-TTC
T ss_pred -----------------------------------------CCCceEEEhhh-hhccC-CHHHHHHHHHHHHHHcC-CCC
Confidence 22699999887 44443 44667899999999999 999
Q ss_pred EEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHc
Q 045407 272 IFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350 (382)
Q Consensus 272 iFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeA 350 (382)
.+++ |......... | ...+|. .+... ..-+.++.+|++.+|++|
T Consensus 302 ~l~i~e~~~~~~~~~--------------~-~~~~d~---------~~~~~-----------~~g~~~t~~e~~~ll~~a 346 (369)
T 3gwz_A 302 RLLVIDNLIDERPAA--------------S-TLFVDL---------LLLVL-----------VGGAERSESEFAALLEKS 346 (369)
T ss_dssp EEEEEEEBCCSSCCH--------------H-HHHHHH---------HHHHH-----------HSCCCBCHHHHHHHHHTT
T ss_pred EEEEEEeccCCCCCC--------------c-hhHhhH---------HHHhh-----------cCCccCCHHHHHHHHHHC
Confidence 8887 5542211100 0 001111 00000 112578999999999999
Q ss_pred CCcEEEEEe
Q 045407 351 GFRSVHFWL 359 (382)
Q Consensus 351 GF~~V~v~~ 359 (382)
||+.++++-
T Consensus 347 Gf~~~~~~~ 355 (369)
T 3gwz_A 347 GLRVERSLP 355 (369)
T ss_dssp TEEEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999973
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.6e-15 Score=132.70 Aligned_cols=106 Identities=11% Similarity=-0.013 Sum_probs=81.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.++. +|+|||+|+.||+.|+++... ...++.++++|+.++..
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~------------ 122 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPR-----QTHKVIPLKGLWEDVAP------------ 122 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGG-----CSSEEEEEESCHHHHGG------------
T ss_pred CCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHh-----cCCCeEEEecCHHHhhc------------
Confidence 457999999999999999887763 899999999999999998532 12579999999876520
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE-ccc-hhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA-FNY-SCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a-fn~-S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
.+....||+|++ .+. +...++ ..+...+|++++++|+ |||
T Consensus 123 ------------------------------------~~~~~~fD~V~~d~~~~~~~~~~-~~~~~~~l~~~~r~Lk-pgG 164 (236)
T 1zx0_A 123 ------------------------------------TLPDGHFDGILYDTYPLSEETWH-THQFNFIKNHAFRLLK-PGG 164 (236)
T ss_dssp ------------------------------------GSCTTCEEEEEECCCCCBGGGTT-THHHHHHHHTHHHHEE-EEE
T ss_pred ------------------------------------ccCCCceEEEEECCcccchhhhh-hhhHHHHHHHHHHhcC-CCe
Confidence 022467999999 322 223332 4566788999999999 999
Q ss_pred EEEE
Q 045407 272 IFVM 275 (382)
Q Consensus 272 iFVf 275 (382)
+|++
T Consensus 165 ~l~~ 168 (236)
T 1zx0_A 165 VLTY 168 (236)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-15 Score=136.52 Aligned_cols=197 Identities=10% Similarity=0.091 Sum_probs=116.1
Q ss_pred CCCCchHHHHHHhhcCChhhH---HHHHHHHHHhh---C-CCCCCcccccCCCccHhHH----HHHHhCCCCeE--EEEe
Q 045407 78 TDMPSKFLLYQQSVQSPKGDI---SYLQKFFLIYV---G-GRQPLHLQEDFCGTALLST----EWLRSDSRRTA--VGLD 144 (382)
Q Consensus 78 ~~~p~~~~LYd~~vq~p~~Di---~yl~~~f~~y~---g-gr~p~~LLEl~CGTG~LS~----elar~g~~~tV--vGVD 144 (382)
.|.+.|...|+..+....... .++.+.+.... + ...+.+|||+|||||.++. .++.+++...| +|+|
T Consensus 10 ~d~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD 89 (292)
T 2aot_A 10 SDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVE 89 (292)
T ss_dssp GCHHHHHHHHHHHHTTBSHHHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEe
Confidence 466778888888886533211 22332222211 1 1234689999999997665 34455555544 9999
Q ss_pred CCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCC
Q 045407 145 LDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGD 224 (382)
Q Consensus 145 LS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (382)
+|++||+.|+++.....+ -...++.+.+++..++.. . . +
T Consensus 90 ~S~~ml~~a~~~~~~~~~-~~~v~~~~~~~~~~~~~~-------------~--~----------------~--------- 128 (292)
T 2aot_A 90 PSAEQIAKYKELVAKTSN-LENVKFAWHKETSSEYQS-------------R--M----------------L--------- 128 (292)
T ss_dssp SCHHHHHHHHHHHHTCSS-CTTEEEEEECSCHHHHHH-------------H--H----------------H---------
T ss_pred CCHHHHHHHHHHHHhccC-CCcceEEEEecchhhhhh-------------h--h----------------c---------
Confidence 999999999998532100 011234444555432210 0 0 0
Q ss_pred CcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecc
Q 045407 225 NCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAE 304 (382)
Q Consensus 225 ~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~ 304 (382)
..+...+||+|+|.+ ++.|+. ++...|++++++|+ |||+|++=..........+. ..+|+.
T Consensus 129 ----~~~~~~~fD~V~~~~-~l~~~~---d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~--------~~~~~~-- 189 (292)
T 2aot_A 129 ----EKKELQKWDFIHMIQ-MLYYVK---DIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLW--------KKYGSR-- 189 (292)
T ss_dssp ----TTTCCCCEEEEEEES-CGGGCS---CHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHH--------HHHGGG--
T ss_pred ----cccCCCceeEEEEee-eeeecC---CHHHHHHHHHHHcC-CCcEEEEEEecCCccHHHHH--------HHHHHh--
Confidence 002246799999886 666665 46788999999999 99999985433221111100 001111
Q ss_pred cccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 305 FDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 305 fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
+ ..+. +.+.+++.++..+|++|||+.+...
T Consensus 190 ~---------------~~~~---------~~~~~~~~~~~~~l~~aGf~~~~~~ 219 (292)
T 2aot_A 190 F---------------PQDD---------LCQYITSDDLTQMLDNLGLKYECYD 219 (292)
T ss_dssp S---------------CCCT---------TCCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred c---------------cCCC---------cccCCCHHHHHHHHHHCCCceEEEE
Confidence 0 0000 1256899999999999999988753
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=130.48 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=74.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.+. +|+|+|+|+.||+.|+++. .++.++++|+.+...
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~~------------ 105 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARANA---------PHADVYEWNGKGELP------------ 105 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHC---------TTSEEEECCSCSSCC------------
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhC---------CCceEEEcchhhccC------------
Confidence 45799999999999999999974 7999999999999999983 368999999854320
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCC-CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS-LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+. ..+||+|++. .+....++.+++.|+ |||+
T Consensus 106 -------------------------------------~~~~~~fD~v~~~----------~~~~~~l~~~~~~Lk-pgG~ 137 (226)
T 3m33_A 106 -------------------------------------AGLGAPFGLIVSR----------RGPTSVILRLPELAA-PDAH 137 (226)
T ss_dssp -------------------------------------TTCCCCEEEEEEE----------SCCSGGGGGHHHHEE-EEEE
T ss_pred -------------------------------------CcCCCCEEEEEeC----------CCHHHHHHHHHHHcC-CCcE
Confidence 12 3579999986 245678889999999 9999
Q ss_pred EE
Q 045407 273 FV 274 (382)
Q Consensus 273 FV 274 (382)
|+
T Consensus 138 l~ 139 (226)
T 3m33_A 138 FL 139 (226)
T ss_dssp EE
T ss_pred EE
Confidence 99
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=137.19 Aligned_cols=188 Identities=13% Similarity=0.083 Sum_probs=121.9
Q ss_pred CCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 80 MPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 80 ~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
.|.....|...|..... -+..++..+.....+.+|||+|||||.++..+++..+..+++|+|+ +.|++.|+++...
T Consensus 149 ~~~~~~~f~~~m~~~~~---~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~ 224 (352)
T 3mcz_A 149 DTRARDAFNDAMVRLSQ---PMVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHA 224 (352)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhh---hHHHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHh
Confidence 34555566666654111 1223333322112256899999999999999999988889999999 8899999987532
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
. ....||.++.+|+.++.. +....||+|
T Consensus 225 -~--~~~~~v~~~~~d~~~~~~-------------------------------------------------~~~~~~D~v 252 (352)
T 3mcz_A 225 -H--DLGGRVEFFEKNLLDARN-------------------------------------------------FEGGAADVV 252 (352)
T ss_dssp -T--TCGGGEEEEECCTTCGGG-------------------------------------------------GTTCCEEEE
T ss_pred -c--CCCCceEEEeCCcccCcc-------------------------------------------------cCCCCccEE
Confidence 1 112489999999977651 013459999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHF 318 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F 318 (382)
++.+ ++.++ +.++....+++++++|+ |||.+++ |..-...... +.+ ...+|. .+
T Consensus 253 ~~~~-vlh~~-~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~--------~~~-----~~~~~~---------~~ 307 (352)
T 3mcz_A 253 MLND-CLHYF-DAREAREVIGHAAGLVK-PGGALLILTMTMNDDRVT--------PAL-----SADFSL---------HM 307 (352)
T ss_dssp EEES-CGGGS-CHHHHHHHHHHHHHTEE-EEEEEEEEEECCCTTSSS--------SHH-----HHHHHH---------HH
T ss_pred EEec-ccccC-CHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCC--------Cch-----HHHhhH---------HH
Confidence 9976 44444 45678999999999999 9998877 6542111000 000 000110 00
Q ss_pred EeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 319 HLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 319 ~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
.... ...+.|+..|++++|++|||+.+++.
T Consensus 308 ~~~~----------~~~~~~t~~e~~~ll~~aGf~~~~~~ 337 (352)
T 3mcz_A 308 MVNT----------NHGELHPTPWIAGVVRDAGLAVGERS 337 (352)
T ss_dssp HHHS----------TTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HhhC----------CCCCcCCHHHHHHHHHHCCCceeeec
Confidence 0000 01256899999999999999999853
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=132.67 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=98.4
Q ss_pred CchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccc
Q 045407 81 PSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
......|++.- |.+-..++..+.. +.. ..+.+|||+|||||.++..|++.- +..+|+|+|+|+.||+.|+++...
T Consensus 8 ~~~~~~y~~~r--p~y~~~~~~~l~~-~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 83 (299)
T 3g5t_A 8 DFNSERYSSSR--PSYPSDFYKMIDE-YHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG 83 (299)
T ss_dssp TCCHHHHHHHS--CCCCHHHHHHHHH-HCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred ccChHHHhhcC--CCCCHHHHHHHHH-Hhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 34456777753 4444444443333 322 235789999999999999999752 557899999999999999998533
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
. .....++.++++|+.+++... ...+...+||+|
T Consensus 84 ~--~~~~~~v~~~~~d~~~~~~~~--------------------------------------------~~~~~~~~fD~V 117 (299)
T 3g5t_A 84 S--PDTYKNVSFKISSSDDFKFLG--------------------------------------------ADSVDKQKIDMI 117 (299)
T ss_dssp C--C-CCTTEEEEECCTTCCGGGC--------------------------------------------TTTTTSSCEEEE
T ss_pred c--cCCCCceEEEEcCHHhCCccc--------------------------------------------cccccCCCeeEE
Confidence 1 011358999999998876200 000113679999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+|.+ ++.|+ +...+|+.+++.|+ |||+|++
T Consensus 118 ~~~~-~l~~~----~~~~~l~~~~~~Lk-pgG~l~i 147 (299)
T 3g5t_A 118 TAVE-CAHWF----DFEKFQRSAYANLR-KDGTIAI 147 (299)
T ss_dssp EEES-CGGGS----CHHHHHHHHHHHEE-EEEEEEE
T ss_pred eHhh-HHHHh----CHHHHHHHHHHhcC-CCcEEEE
Confidence 9976 66666 67889999999999 9999988
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=123.92 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+..++..++ ..+.+|||+|||+|.++..+++.|+. +|+|+|+|+.|++.|+++... ..++.++++|+.+
T Consensus 30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~ 100 (215)
T 2pxx_A 30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRK 100 (215)
T ss_dssp HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTS
T ss_pred HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhc
Confidence 34555555544 23457999999999999999999874 799999999999999998521 2479999999876
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC--------
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH-------- 250 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~-------- 250 (382)
++ +....||+|++.. .+.++.
T Consensus 101 ~~--------------------------------------------------~~~~~fD~v~~~~-~~~~~~~~~~~~~~ 129 (215)
T 2pxx_A 101 LD--------------------------------------------------FPSASFDVVLEKG-TLDALLAGERDPWT 129 (215)
T ss_dssp CC--------------------------------------------------SCSSCEEEEEEES-HHHHHTTTCSCTTS
T ss_pred CC--------------------------------------------------CCCCcccEEEECc-chhhhccccccccc
Confidence 54 1245799999854 333322
Q ss_pred ----ChhHHHHHHHHHHhhccCCCcEEEEeccCC
Q 045407 251 ----KRADLVLYFKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 251 ----~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg 280 (382)
...+...+++.++++|+ |||+||+-.++.
T Consensus 130 ~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~ 162 (215)
T 2pxx_A 130 VSSEGVHTVDQVLSEVSRVLV-PGGRFISMTSAA 162 (215)
T ss_dssp CCHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCC
T ss_pred cccchhHHHHHHHHHHHHhCc-CCCEEEEEeCCC
Confidence 25678999999999999 999999966654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-15 Score=137.90 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=79.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..|++.+. +|+|||+|+.||+.|+++ .+|.++++|+.+++
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~----------~~v~~~~~~~e~~~-------------- 94 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRH----------PRVTYAVAPAEDTG-------------- 94 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCC----------TTEEEEECCTTCCC--------------
T ss_pred CCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhc----------CCceeehhhhhhhc--------------
Confidence 4799999999999999999985 799999999999866543 37999999987766
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
+....||+|+|.. ++.|+. ..+.|++++++|+ |||+|+
T Consensus 95 ------------------------------------~~~~sfD~v~~~~-~~h~~~----~~~~~~e~~rvLk-pgG~l~ 132 (257)
T 4hg2_A 95 ------------------------------------LPPASVDVAIAAQ-AMHWFD----LDRFWAELRRVAR-PGAVFA 132 (257)
T ss_dssp ------------------------------------CCSSCEEEEEECS-CCTTCC----HHHHHHHHHHHEE-EEEEEE
T ss_pred ------------------------------------ccCCcccEEEEee-ehhHhh----HHHHHHHHHHHcC-CCCEEE
Confidence 2356799999965 665543 4578999999999 999998
Q ss_pred EeccC
Q 045407 275 MDLYG 279 (382)
Q Consensus 275 fDl~g 279 (382)
+=.++
T Consensus 133 ~~~~~ 137 (257)
T 4hg2_A 133 AVTYG 137 (257)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 85443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=123.24 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=84.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++... .+..++.++++|+.+++
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~~d~~~~~------------- 93 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSI----ENLDNLHTRVVDLNNLT------------- 93 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH----HTCTTEEEEECCGGGCC-------------
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHh----CCCCCcEEEEcchhhCC-------------
Confidence 56899999999999999999974 799999999999999987532 12236899999986654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ..+||+|++.. ++.|+. .++...+++.++++|+ |||++
T Consensus 94 -------------------------------------~-~~~~D~v~~~~-~l~~~~-~~~~~~~l~~~~~~L~-~gG~l 132 (199)
T 2xvm_A 94 -------------------------------------F-DRQYDFILSTV-VLMFLE-AKTIPGLIANMQRCTK-PGGYN 132 (199)
T ss_dssp -------------------------------------C-CCCEEEEEEES-CGGGSC-GGGHHHHHHHHHHTEE-EEEEE
T ss_pred -------------------------------------C-CCCceEEEEcc-hhhhCC-HHHHHHHHHHHHHhcC-CCeEE
Confidence 1 46799999875 666654 5688999999999999 99997
Q ss_pred EE-ecc
Q 045407 274 VM-DLY 278 (382)
Q Consensus 274 Vf-Dl~ 278 (382)
++ +..
T Consensus 133 ~~~~~~ 138 (199)
T 2xvm_A 133 LIVAAM 138 (199)
T ss_dssp EEEEEB
T ss_pred EEEEee
Confidence 65 543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=126.49 Aligned_cols=109 Identities=21% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|++.++ +|+|||+|+.||+.|+++.. ..++.++++|+.++.....
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~--------- 118 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------AANISYRLLDGLVPEQAAQ--------- 118 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------CTTEEEEECCTTCHHHHHH---------
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------ccCceEEECcccccccccc---------
Confidence 35799999999999999999997 69999999999999999851 1379999999998762100
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE-
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI- 272 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi- 272 (382)
+. ....||+|++.+ ++.++ ..++...+|+.++++|+ |||+
T Consensus 119 ----~~--------------------------------~~~~~d~v~~~~-~~~~~-~~~~~~~~l~~~~~~Lk-pgG~l 159 (245)
T 3ggd_A 119 ----IH--------------------------------SEIGDANIYMRT-GFHHI-PVEKRELLGQSLRILLG-KQGAM 159 (245)
T ss_dssp ----HH--------------------------------HHHCSCEEEEES-SSTTS-CGGGHHHHHHHHHHHHT-TTCEE
T ss_pred ----cc--------------------------------cccCccEEEEcc-hhhcC-CHHHHHHHHHHHHHHcC-CCCEE
Confidence 00 012489998875 45554 55688999999999999 9997
Q ss_pred EEEeccC
Q 045407 273 FVMDLYG 279 (382)
Q Consensus 273 FVfDl~g 279 (382)
+|+|+..
T Consensus 160 ~i~~~~~ 166 (245)
T 3ggd_A 160 YLIELGT 166 (245)
T ss_dssp EEEEECT
T ss_pred EEEeCCc
Confidence 5557653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-14 Score=136.45 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=108.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|+|+|||+|.++..++++.|..+++..|+ |++++.|+++... .+..||+++.+|+.+++
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~----~~~~rv~~~~gD~~~~~------------- 241 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF----QEEEQIDFQEGDFFKDP------------- 241 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTTSC-------------
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh----cccCceeeecCccccCC-------------
Confidence 34799999999999999999999999999998 8899999987532 23469999999997654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.+.+|+|+..+-.++ .+.++.+..|++++++|+ |||.+
T Consensus 242 ---------------------------------------~~~~D~~~~~~vlh~--~~d~~~~~iL~~~~~al~-pgg~l 279 (353)
T 4a6d_A 242 ---------------------------------------LPEADLYILARVLHD--WADGKCSHLLERIYHTCK-PGGGI 279 (353)
T ss_dssp ---------------------------------------CCCCSEEEEESSGGG--SCHHHHHHHHHHHHHHCC-TTCEE
T ss_pred ---------------------------------------CCCceEEEeeeeccc--CCHHHHHHHHHHHHhhCC-CCCEE
Confidence 356799988764333 345778999999999999 88866
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|+ |..-+..... + |....+|. +....-+. |-+|..|++++|++|||
T Consensus 280 li~e~~~~~~~~~--------~-----~~~~~~dl---------~ml~~~~g-----------~ert~~e~~~ll~~AGf 326 (353)
T 4a6d_A 280 LVIESLLDEDRRG--------P-----LLTQLYSL---------NMLVQTEG-----------QERTPTHYHMLLSSAGF 326 (353)
T ss_dssp EEEECCCCTTSCC--------C-----HHHHHHHH---------HHHHSSSC-----------CCCCHHHHHHHHHHHTC
T ss_pred EEEEeeeCCCCCC--------C-----HHHHHHHH---------HHHHhCCC-----------cCCCHHHHHHHHHHCCC
Confidence 65 7542110000 0 00001121 00000111 45789999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.|+++
T Consensus 327 ~~v~v~ 332 (353)
T 4a6d_A 327 RDFQFK 332 (353)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.2e-14 Score=132.46 Aligned_cols=152 Identities=19% Similarity=0.134 Sum_probs=107.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++..+..+++|+|+ +.|++.|+++.... + -..+|.++++|+.++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~~-------------- 230 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL-L--AGERVSLVGGDMLQEV-------------- 230 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH-H--HTTSEEEEESCTTTCC--------------
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc-C--CCCcEEEecCCCCCCC--------------
Confidence 6899999999999999999987789999999 99999999875321 1 0147999999987632
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
...||+|++.+- +.++ ..++....+++++++|+ |||.++
T Consensus 231 --------------------------------------~~~~D~v~~~~v-l~~~-~~~~~~~~l~~~~~~L~-pgG~l~ 269 (334)
T 2ip2_A 231 --------------------------------------PSNGDIYLLSRI-IGDL-DEAASLRLLGNCREAMA-GDGRVV 269 (334)
T ss_dssp --------------------------------------CSSCSEEEEESC-GGGC-CHHHHHHHHHHHHHHSC-TTCEEE
T ss_pred --------------------------------------CCCCCEEEEchh-ccCC-CHHHHHHHHHHHHHhcC-CCCEEE
Confidence 346999998763 3333 45677899999999999 999887
Q ss_pred E-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 275 M-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 275 f-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
+ |..-..... .|....+|.. .....+ -+.++..|++++|++|||+
T Consensus 270 i~e~~~~~~~~--------------~~~~~~~~~~---------~~~~~~-----------~~~~t~~e~~~ll~~aGf~ 315 (334)
T 2ip2_A 270 VIERTISASEP--------------SPMSVLWDVH---------LFMACA-----------GRHRTTEEVVDLLGRGGFA 315 (334)
T ss_dssp EEECCBCSSSC--------------CHHHHHHHHH---------HHHHHS-----------CCCCBHHHHHHHHHHTTEE
T ss_pred EEEeccCCCCC--------------cchhHHhhhH---------hHhhCC-----------CcCCCHHHHHHHHHHCCCc
Confidence 7 554211100 0000011110 000001 1456899999999999999
Q ss_pred EEEEEe
Q 045407 354 SVHFWL 359 (382)
Q Consensus 354 ~V~v~~ 359 (382)
.++++-
T Consensus 316 ~~~~~~ 321 (334)
T 2ip2_A 316 VERIVD 321 (334)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 999873
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=134.03 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=106.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+++|+|+ +.||+.|+++.... + -..+|.++++|+.++.
T Consensus 183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~~------------- 245 (374)
T 1qzz_A 183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-G--LADRVTVAEGDFFKPL------------- 245 (374)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-T--CTTTEEEEECCTTSCC-------------
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc-C--CCCceEEEeCCCCCcC-------------
Confidence 56899999999999999999988789999999 99999999875321 1 1137999999987532
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...||+|++.+ ++.++. ..+....+++++++|+ |||.+
T Consensus 246 ---------------------------------------~~~~D~v~~~~-vl~~~~-~~~~~~~l~~~~~~L~-pgG~l 283 (374)
T 1qzz_A 246 ---------------------------------------PVTADVVLLSF-VLLNWS-DEDALTILRGCVRALE-PGGRL 283 (374)
T ss_dssp ---------------------------------------SCCEEEEEEES-CGGGSC-HHHHHHHHHHHHHHEE-EEEEE
T ss_pred ---------------------------------------CCCCCEEEEec-cccCCC-HHHHHHHHHHHHHhcC-CCcEE
Confidence 23499999876 444443 3566799999999999 99977
Q ss_pred EE-ec--cCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHc
Q 045407 274 VM-DL--YGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350 (382)
Q Consensus 274 Vf-Dl--~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeA 350 (382)
|+ |. ........ .|. ..+|..- ... ...+.|+..+++++|++|
T Consensus 284 ~i~e~~~~~~~~~~~-------------~~~-~~~~~~~---------~~~-----------~~~~~~~~~~~~~ll~~a 329 (374)
T 1qzz_A 284 LVLDRADVEGDGADR-------------FFS-TLLDLRM---------LTF-----------MGGRVRTRDEVVDLAGSA 329 (374)
T ss_dssp EEEECCH-------H-------------HHH-HHHHHHH---------HHH-----------HSCCCCCHHHHHHHHHTT
T ss_pred EEEechhhcCCCCCc-------------chh-hhcchHH---------HHh-----------CCCcCCCHHHHHHHHHHC
Confidence 65 66 31110000 000 0011100 000 012578999999999999
Q ss_pred CCcEEEEEe
Q 045407 351 GFRSVHFWL 359 (382)
Q Consensus 351 GF~~V~v~~ 359 (382)
||+.++++.
T Consensus 330 Gf~~~~~~~ 338 (374)
T 1qzz_A 330 GLALASERT 338 (374)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEEEE
Confidence 999999864
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-14 Score=140.67 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=102.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..++++.+..+++|+|+ +.|++.|+++ .+|.++++|+.++.
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~------------- 259 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----------SGVEHLGGDMFDGV------------- 259 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTCC-------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----------CCCEEEecCCCCCC-------------
Confidence 46899999999999999999999889999999 9999755432 47999999997632
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
... |+|++.+- +.+ ...++....|++++++|+ |||.+
T Consensus 260 ---------------------------------------p~~-D~v~~~~v-lh~-~~~~~~~~~l~~~~~~L~-pgG~l 296 (368)
T 3reo_A 260 ---------------------------------------PKG-DAIFIKWI-CHD-WSDEHCLKLLKNCYAALP-DHGKV 296 (368)
T ss_dssp ---------------------------------------CCC-SEEEEESC-GGG-BCHHHHHHHHHHHHHHSC-TTCEE
T ss_pred ---------------------------------------CCC-CEEEEech-hhc-CCHHHHHHHHHHHHHHcC-CCCEE
Confidence 223 99987763 322 245678899999999999 99977
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
++ |..-...... . ...|....+|. .... ....-+.++.+|++++|++|||
T Consensus 297 ~i~e~~~~~~~~~---------~-~~~~~~~~~d~---------~~~~----------~~~~g~~rt~~e~~~ll~~AGF 347 (368)
T 3reo_A 297 IVAEYILPPSPDP---------S-IATKVVIHTDA---------LMLA----------YNPGGKERTEKEFQALAMASGF 347 (368)
T ss_dssp EEEECCCCSSCCC---------C-HHHHHHHHHHH---------HHHH----------HSSBCCCCCHHHHHHHHHHTTC
T ss_pred EEEEeccCCCCCC---------c-hhhhHHHhhhH---------HHHh----------hcCCCccCCHHHHHHHHHHCCC
Confidence 66 7652211100 0 00000000111 0000 0011256799999999999999
Q ss_pred cEEEEEe
Q 045407 353 RSVHFWL 359 (382)
Q Consensus 353 ~~V~v~~ 359 (382)
+.++++-
T Consensus 348 ~~v~~~~ 354 (368)
T 3reo_A 348 RGFKVAS 354 (368)
T ss_dssp CEEEEEE
T ss_pred eeeEEEE
Confidence 9999863
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=131.21 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=86.0
Q ss_pred CCcccccCCCccH----hHHHHHHh-CC---CCeEEEEeCCHHHHHHHHHhcccc-----c-------------cC-CC-
Q 045407 114 PLHLQEDFCGTAL----LSTEWLRS-DS---RRTAVGLDLDLEALEWCMENNLNK-----V-------------GA-DG- 165 (382)
Q Consensus 114 p~~LLEl~CGTG~----LS~elar~-g~---~~tVvGVDLS~emL~~A~e~~~~k-----l-------------~~-d~- 165 (382)
+.+|+|+|||||. +++.|++. +. ..+|+|+|+|+.||+.|+++.... + .. ++
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 5789999999998 78878776 31 247999999999999999874210 0 00 11
Q ss_pred -------CcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCC-CCCcc
Q 045407 166 -------YSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS-LPARD 237 (382)
Q Consensus 166 -------~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD 237 (382)
..+|.|.++|+.++++ + .++||
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~--------------------------------------------------~~~~~fD 215 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQY--------------------------------------------------NVPGPFD 215 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSC--------------------------------------------------CCCCCEE
T ss_pred eeechhhcccCeEEecccCCCCC--------------------------------------------------CcCCCee
Confidence 0368999999987541 1 35799
Q ss_pred EEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 238 IICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 238 iV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+|+|.| ++.||. ++...+.++.++++|+ |||+|++..
T Consensus 216 lI~crn-vliyf~-~~~~~~vl~~~~~~L~-pgG~L~lg~ 252 (274)
T 1af7_A 216 AIFCRN-VMIYFD-KTTQEDILRRFVPLLK-PDGLLFAGH 252 (274)
T ss_dssp EEEECS-SGGGSC-HHHHHHHHHHHGGGEE-EEEEEEECT
T ss_pred EEEECC-chHhCC-HHHHHHHHHHHHHHhC-CCcEEEEEe
Confidence 999987 888985 5778999999999999 999999954
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-14 Score=122.73 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.+.+..+.. .+.+|||+|||||.++..+++.+. .+|+|+|+|+.|++.|+++... .+...+.++++|+.+
T Consensus 48 ~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~ 120 (205)
T 3grz_A 48 QLAMLGIERAMV--KPLTVADVGTGSGILAIAAHKLGA-KSVLATDISDESMTAAEENAAL----NGIYDIALQKTSLLA 120 (205)
T ss_dssp HHHHHHHHHHCS--SCCEEEEETCTTSHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHH----TTCCCCEEEESSTTT
T ss_pred HHHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH----cCCCceEEEeccccc
Confidence 344444444332 245799999999999999998865 4899999999999999998532 122238999999865
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
+. ...||+|++.. .+ ..+...
T Consensus 121 ~~----------------------------------------------------~~~fD~i~~~~-~~------~~~~~~ 141 (205)
T 3grz_A 121 DV----------------------------------------------------DGKFDLIVANI-LA------EILLDL 141 (205)
T ss_dssp TC----------------------------------------------------CSCEEEEEEES-CH------HHHHHH
T ss_pred cC----------------------------------------------------CCCceEEEECC-cH------HHHHHH
Confidence 43 46799999853 22 356889
Q ss_pred HHHHHhhccCCCcEEEEe
Q 045407 259 FKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfD 276 (382)
++.+++.|+ |||++++-
T Consensus 142 l~~~~~~L~-~gG~l~~~ 158 (205)
T 3grz_A 142 IPQLDSHLN-EDGQVIFS 158 (205)
T ss_dssp GGGSGGGEE-EEEEEEEE
T ss_pred HHHHHHhcC-CCCEEEEE
Confidence 999999999 99999983
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=121.27 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=83.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|++.++..+|+|+|+|++|++.|+++... . +..++.++++|+.+...
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~---~~~~v~~~~~d~~~~~~------------ 104 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK-F---VARNVTLVEAFAPEGLD------------ 104 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHH-H---TCTTEEEEECCTTTTCT------------
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-h---CCCcEEEEeCChhhhhh------------
Confidence 4679999999999999999999778999999999999999997532 1 22479999999865430
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
..+.||+|++.... .++..+|+.+++.|+ |||+|
T Consensus 105 --------------------------------------~~~~~D~i~~~~~~-------~~~~~~l~~~~~~Lk-pgG~l 138 (204)
T 3e05_A 105 --------------------------------------DLPDPDRVFIGGSG-------GMLEEIIDAVDRRLK-SEGVI 138 (204)
T ss_dssp --------------------------------------TSCCCSEEEESCCT-------TCHHHHHHHHHHHCC-TTCEE
T ss_pred --------------------------------------cCCCCCEEEECCCC-------cCHHHHHHHHHHhcC-CCeEE
Confidence 13669999876522 167789999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++...
T Consensus 139 ~~~~~ 143 (204)
T 3e05_A 139 VLNAV 143 (204)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99754
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-14 Score=130.01 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=84.5
Q ss_pred CCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..+.+|||+|||||.++..+++..+ ..+|+|+|+|+.|++.|+++... ...++.++++|+.+++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~v~~~~~d~~~~~---------- 85 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-----LPYDSEFLEGDATEIE---------- 85 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-----SSSEEEEEESCTTTCC----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-----cCCceEEEEcchhhcC----------
Confidence 4467899999999999999999855 26899999999999999998532 1238999999998765
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+ ..+||+|++.+ ++.++. +...+|++++++|+ ||
T Consensus 86 -------~----------------------------------~~~fD~v~~~~-~l~~~~---~~~~~l~~~~~~Lk-pg 119 (284)
T 3gu3_A 86 -------L----------------------------------NDKYDIAICHA-FLLHMT---TPETMLQKMIHSVK-KG 119 (284)
T ss_dssp -------C----------------------------------SSCEEEEEEES-CGGGCS---SHHHHHHHHHHTEE-EE
T ss_pred -------c----------------------------------CCCeeEEEECC-hhhcCC---CHHHHHHHHHHHcC-CC
Confidence 1 35799999976 556654 44689999999999 99
Q ss_pred cEEEE
Q 045407 271 GIFVM 275 (382)
Q Consensus 271 GiFVf 275 (382)
|+|++
T Consensus 120 G~l~~ 124 (284)
T 3gu3_A 120 GKIIC 124 (284)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99997
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-14 Score=130.33 Aligned_cols=108 Identities=9% Similarity=-0.062 Sum_probs=82.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++..+ .+|+|||+|++||+.|+++... ...++.++++|..+..
T Consensus 61 G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~-----~~~~~~~~~~~a~~~~------------- 121 (236)
T 3orh_A 61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-----QTHKVIPLKGLWEDVA------------- 121 (236)
T ss_dssp CEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGG-----CSSEEEEEESCHHHHG-------------
T ss_pred CCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhh-----CCCceEEEeehHHhhc-------------
Confidence 35799999999999999998876 4899999999999999998632 3357889998864432
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc-chhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN-YSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn-~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. .+...+||.|+.-. .+...+....+...+|++++++|+ |||+
T Consensus 122 ----~-------------------------------~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLk-PGG~ 165 (236)
T 3orh_A 122 ----P-------------------------------TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGV 165 (236)
T ss_dssp ----G-------------------------------GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEE
T ss_pred ----c-------------------------------cccccCCceEEEeeeecccchhhhcchhhhhhhhhheeC-CCCE
Confidence 0 12356799986421 122333445688899999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
|+|.
T Consensus 166 l~f~ 169 (236)
T 3orh_A 166 LTYC 169 (236)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9985
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=131.92 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=107.6
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..+++.++..+++++|+ +.|++.|+++.... + -..+|.++++|+.++.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~~------------ 246 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-G--LSDRVDVVEGDFFEPL------------ 246 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-T--CTTTEEEEECCTTSCC------------
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc-C--CCCceEEEeCCCCCCC------------
Confidence 356899999999999999999998889999999 99999999875321 1 1137999999986532
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
...||+|++.+ ++.++ ..++....+++++++|+ |||.
T Consensus 247 ----------------------------------------~~~~D~v~~~~-vl~~~-~~~~~~~~l~~~~~~L~-pgG~ 283 (360)
T 1tw3_A 247 ----------------------------------------PRKADAIILSF-VLLNW-PDHDAVRILTRCAEALE-PGGR 283 (360)
T ss_dssp ----------------------------------------SSCEEEEEEES-CGGGS-CHHHHHHHHHHHHHTEE-EEEE
T ss_pred ----------------------------------------CCCccEEEEcc-cccCC-CHHHHHHHHHHHHHhcC-CCcE
Confidence 23499999876 44443 34566899999999999 9997
Q ss_pred EEE-ecc-CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHc
Q 045407 273 FVM-DLY-GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350 (382)
Q Consensus 273 FVf-Dl~-gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeA 350 (382)
+|+ |.. -...... .|.. .+|.. .... ...+.++..+++++|++|
T Consensus 284 l~i~e~~~~~~~~~~-------------~~~~-~~~~~---------~~~~-----------~~~~~~t~~e~~~ll~~a 329 (360)
T 1tw3_A 284 ILIHERDDLHENSFN-------------EQFT-ELDLR---------MLVF-----------LGGALRTREKWDGLAASA 329 (360)
T ss_dssp EEEEECCBCGGGCCS-------------HHHH-HHHHH---------HHHH-----------HSCCCCBHHHHHHHHHHT
T ss_pred EEEEEEeccCCCCCc-------------chhh-hccHH---------Hhhh-----------cCCcCCCHHHHHHHHHHC
Confidence 776 654 1110000 0000 01100 0000 012568999999999999
Q ss_pred CCcEEEEEe
Q 045407 351 GFRSVHFWL 359 (382)
Q Consensus 351 GF~~V~v~~ 359 (382)
||+.++++.
T Consensus 330 Gf~~~~~~~ 338 (360)
T 1tw3_A 330 GLVVEEVRQ 338 (360)
T ss_dssp TEEEEEEEE
T ss_pred CCeEEEEEe
Confidence 999999863
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=120.62 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=85.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++++. .+|+|||+|++|++.|+++... . +..++.++++|+.++..
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~-~---~~~~v~~~~~d~~~~~~------------ 107 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGA-ASVLFVESDQRSAAVIARNIEA-L---GLSGATLRRGAVAAVVA------------ 107 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEECCHHHHHHHHHHHHH-H---TCSCEEEEESCHHHHHH------------
T ss_pred CCEEEEeCCCcCHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHH-c---CCCceEEEEccHHHHHh------------
Confidence 45799999999999999998875 4899999999999999998533 1 12479999999876541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHh--hccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLH--ALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~--~L~~pGG 271 (382)
. +...+||+|++-. . |.+..+++...++.+.+ .|+ |||
T Consensus 108 ----~--------------------------------~~~~~fD~i~~~~-p--~~~~~~~~~~~l~~~~~~~~L~-pgG 147 (189)
T 3p9n_A 108 ----A--------------------------------GTTSPVDLVLADP-P--YNVDSADVDAILAALGTNGWTR-EGT 147 (189)
T ss_dssp ----H--------------------------------CCSSCCSEEEECC-C--TTSCHHHHHHHHHHHHHSSSCC-TTC
T ss_pred ----h--------------------------------ccCCCccEEEECC-C--CCcchhhHHHHHHHHHhcCccC-CCe
Confidence 0 1136799998843 2 33445788999999999 999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
+||+....
T Consensus 148 ~l~~~~~~ 155 (189)
T 3p9n_A 148 VAVVERAT 155 (189)
T ss_dssp EEEEEEET
T ss_pred EEEEEecC
Confidence 99997754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-15 Score=143.59 Aligned_cols=143 Identities=16% Similarity=0.212 Sum_probs=99.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe-ccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH-GNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~-gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++.|. +|+|||+|+.|++.|+++... ....++. ++...++
T Consensus 108 ~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~~~~~~l~------------ 166 (416)
T 4e2x_A 108 DPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREKGIR-------VRTDFFEKATADDVR------------ 166 (416)
T ss_dssp SCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTTTCC-------EECSCCSHHHHHHHH------------
T ss_pred CCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHcCCC-------cceeeechhhHhhcc------------
Confidence 45899999999999999999986 799999999999999987321 1111121 1111111
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ ...+||+|++.+ ++.|+. +...+|+.++++|+ |||+
T Consensus 167 -----~---------------------------------~~~~fD~I~~~~-vl~h~~---d~~~~l~~~~r~Lk-pgG~ 203 (416)
T 4e2x_A 167 -----R---------------------------------TEGPANVIYAAN-TLCHIP---YVQSVLEGVDALLA-PDGV 203 (416)
T ss_dssp -----H---------------------------------HHCCEEEEEEES-CGGGCT---THHHHHHHHHHHEE-EEEE
T ss_pred -----c---------------------------------CCCCEEEEEECC-hHHhcC---CHHHHHHHHHHHcC-CCeE
Confidence 1 136799999986 666664 67889999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|++....- ..+.... .++. . +..+++.|+..+++.+|+++||
T Consensus 204 l~i~~~~~----~~~~~~~------------~~~~------------------~----~~~~~~~~s~~~l~~ll~~aGf 245 (416)
T 4e2x_A 204 FVFEDPYL----GDIVAKT------------SFDQ------------------I----FDEHFFLFSATSVQGMAQRCGF 245 (416)
T ss_dssp EEEEEECH----HHHHHHT------------CGGG------------------C----STTCCEECCHHHHHHHHHHTTE
T ss_pred EEEEeCCh----HHhhhhc------------chhh------------------h----hhhhhhcCCHHHHHHHHHHcCC
Confidence 99965421 1110000 1110 0 0113467999999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.+.+.
T Consensus 246 ~~~~~~ 251 (416)
T 4e2x_A 246 ELVDVQ 251 (416)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998875
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-14 Score=123.01 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=85.5
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
...+++..+.. .+.+|||+|||||.++..+ +. .+|+|+|+|+.|++.|+++. .++.++++|+.++
T Consensus 25 ~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~-~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~ 89 (211)
T 2gs9_A 25 EEERALKGLLP--PGESLLEVGAGTGYWLRRL---PY-PQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL 89 (211)
T ss_dssp HHHHHHHTTCC--CCSEEEEETCTTCHHHHHC---CC-SEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC
T ss_pred HHHHHHHHhcC--CCCeEEEECCCCCHhHHhC---CC-CeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC
Confidence 34444544332 4568999999999998887 43 27999999999999999984 2688999998765
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
+ +...+||+|++.+ ++.++. +....+
T Consensus 90 ~--------------------------------------------------~~~~~fD~v~~~~-~l~~~~---~~~~~l 115 (211)
T 2gs9_A 90 P--------------------------------------------------FPGESFDVVLLFT-TLEFVE---DVERVL 115 (211)
T ss_dssp C--------------------------------------------------SCSSCEEEEEEES-CTTTCS---CHHHHH
T ss_pred C--------------------------------------------------CCCCcEEEEEEcC-hhhhcC---CHHHHH
Confidence 5 1245799999874 666665 567899
Q ss_pred HHHHhhccCCCcEEEEeccCC
Q 045407 260 KHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl~gg 280 (382)
+.+++.|+ |||++|+-..+.
T Consensus 116 ~~~~~~L~-pgG~l~i~~~~~ 135 (211)
T 2gs9_A 116 LEARRVLR-PGGALVVGVLEA 135 (211)
T ss_dssp HHHHHHEE-EEEEEEEEEECT
T ss_pred HHHHHHcC-CCCEEEEEecCC
Confidence 99999999 999999966543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=131.50 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=120.5
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG 162 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~ 162 (382)
....|...|..... ...+..++..+ .-..+.+|||+|||||.++..++++.+..+++|+|+ +.|++.|+++.... +
T Consensus 162 ~~~~f~~~m~~~~~-~~~~~~l~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~ 237 (359)
T 1x19_A 162 EDNLYFEEIHRSNA-KFAIQLLLEEA-KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-G 237 (359)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHC-CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHhcc-chhHHHHHHhc-CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc-C
Confidence 66677776643322 01222333332 223356899999999999999999988789999999 99999999875321 1
Q ss_pred CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc
Q 045407 163 ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF 242 (382)
Q Consensus 163 ~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af 242 (382)
-..||.++++|+.+++ .+..|+|++.
T Consensus 238 --~~~~v~~~~~d~~~~~----------------------------------------------------~~~~D~v~~~ 263 (359)
T 1x19_A 238 --VADRMRGIAVDIYKES----------------------------------------------------YPEADAVLFC 263 (359)
T ss_dssp --CTTTEEEEECCTTTSC----------------------------------------------------CCCCSEEEEE
T ss_pred --CCCCEEEEeCccccCC----------------------------------------------------CCCCCEEEEe
Confidence 1237999999997765 2345999987
Q ss_pred cchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEee
Q 045407 243 NYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQ 321 (382)
Q Consensus 243 n~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~ 321 (382)
+ ++.++ ..++....|++++++|+ |||.+|+ |....... . +.+..+| . .... ..
T Consensus 264 ~-vlh~~-~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~-~--------~~~~~~~-~----~~~~---------~~ 317 (359)
T 1x19_A 264 R-ILYSA-NEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPE-N--------PNFDYLS-H----YILG---------AG 317 (359)
T ss_dssp S-CGGGS-CHHHHHHHHHHHHTTCC-TTCEEEEEEECCCCTT-S--------CCHHHHH-H----HGGG---------GG
T ss_pred c-hhccC-CHHHHHHHHHHHHHhcC-CCCEEEEEecccCCCC-C--------chHHHHH-H----HHHh---------cC
Confidence 5 44443 33568999999999999 9999955 76532210 0 0000000 0 0000 00
Q ss_pred cccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEe
Q 045407 322 KEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 322 ~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~ 359 (382)
.+. . ..+.++.+|++++|++|||+.++++.
T Consensus 318 ~g~-~-------~~~~~t~~e~~~ll~~aGf~~v~~~~ 347 (359)
T 1x19_A 318 MPF-S-------VLGFKEQARYKEILESLGYKDVTMVR 347 (359)
T ss_dssp SSC-C-------CCCCCCGGGHHHHHHHHTCEEEEEEE
T ss_pred CCC-c-------ccCCCCHHHHHHHHHHCCCceEEEEe
Confidence 011 0 11458999999999999999999863
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=114.53 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=85.0
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCc--ceEEEeccCCCchhhhhcccchh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYS--RISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~--RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++... .+.. |+.++++|+.++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~----~~~~~~~~~~~~~d~~~~~---------- 115 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKL----NNLDNYDIRVVHSDLYENV---------- 115 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH----TTCTTSCEEEEECSTTTTC----------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHH----cCCCccceEEEECchhccc----------
Confidence 35689999999999999999995 5899999999999999998532 1122 4999999987643
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
...+||+|++.. .|.+...++...++.+++.|+ ||
T Consensus 116 -----------------------------------------~~~~~D~v~~~~---~~~~~~~~~~~~l~~~~~~L~-~g 150 (194)
T 1dus_A 116 -----------------------------------------KDRKYNKIITNP---PIRAGKEVLHRIIEEGKELLK-DN 150 (194)
T ss_dssp -----------------------------------------TTSCEEEEEECC---CSTTCHHHHHHHHHHHHHHEE-EE
T ss_pred -----------------------------------------ccCCceEEEECC---CcccchhHHHHHHHHHHHHcC-CC
Confidence 135699999843 233346788999999999999 99
Q ss_pred cEEEEeccCC
Q 045407 271 GIFVMDLYGG 280 (382)
Q Consensus 271 GiFVfDl~gg 280 (382)
|++++-....
T Consensus 151 G~l~~~~~~~ 160 (194)
T 1dus_A 151 GEIWVVIQTK 160 (194)
T ss_dssp EEEEEEEEST
T ss_pred CEEEEEECCC
Confidence 9999976653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=137.94 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=95.8
Q ss_pred chHHHHHH--hhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 82 SKFLLYQQ--SVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 82 ~~~~LYd~--~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
+|-.+|.+ .+++..--..|...++.. .......+|||+|||||.++..+++.|. .+|+|||+| +|++.|+++...
T Consensus 31 ~ya~~~~~~~~l~d~~r~~~~~~~i~~~-~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~ 107 (376)
T 3r0q_C 31 TYSFLYHQKDMLSDRVRMDAYFNAVFQN-KHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKA 107 (376)
T ss_dssp GGGCHHHHHHHHTCHHHHHHHHHHHHTT-TTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHH
T ss_pred HHHHhHHHHHHhcChHHHHHHHHHHHhc-cccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHH
Confidence 34455654 233333333444444332 2233356899999999999999999986 389999999 999999987532
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.+ -..+|.++++|+.++. + ..+||+|
T Consensus 108 -~~--~~~~v~~~~~d~~~~~-----------------~----------------------------------~~~~D~I 133 (376)
T 3r0q_C 108 -NN--LDHIVEVIEGSVEDIS-----------------L----------------------------------PEKVDVI 133 (376)
T ss_dssp -TT--CTTTEEEEESCGGGCC-----------------C----------------------------------SSCEEEE
T ss_pred -cC--CCCeEEEEECchhhcC-----------------c----------------------------------CCcceEE
Confidence 11 1246999999997665 2 2679999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
++ +....++.....+..+++.+++.|+ |||+||++.
T Consensus 134 v~-~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~li~~~ 169 (376)
T 3r0q_C 134 IS-EWMGYFLLRESMFDSVISARDRWLK-PTGVMYPSH 169 (376)
T ss_dssp EE-CCCBTTBTTTCTHHHHHHHHHHHEE-EEEEEESSE
T ss_pred EE-cChhhcccchHHHHHHHHHHHhhCC-CCeEEEEec
Confidence 99 3233344445668889999999999 999999853
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-14 Score=138.54 Aligned_cols=149 Identities=15% Similarity=0.044 Sum_probs=102.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..++++.+..+++++|+ ++|++.|++. .+|.++.+|+.++.
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~------------- 257 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF----------PGVTHVGGDMFKEV------------- 257 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTCC-------------
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc----------CCeEEEeCCcCCCC-------------
Confidence 46899999999999999999998889999999 9998755432 48999999997632
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
... |+|++.+-.++ ...++....|++++++|+ |||.+
T Consensus 258 ---------------------------------------p~~-D~v~~~~vlh~--~~d~~~~~~L~~~~~~L~-pgG~l 294 (364)
T 3p9c_A 258 ---------------------------------------PSG-DTILMKWILHD--WSDQHCATLLKNCYDALP-AHGKV 294 (364)
T ss_dssp ---------------------------------------CCC-SEEEEESCGGG--SCHHHHHHHHHHHHHHSC-TTCEE
T ss_pred ---------------------------------------CCC-CEEEehHHhcc--CCHHHHHHHHHHHHHHcC-CCCEE
Confidence 223 99987763222 255788999999999999 99987
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEe-ecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWE-QAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWe-q~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
++ |..-...... . ..|. ...+|. .+.. ....-+.++.+|++++|++||
T Consensus 295 ~i~e~~~~~~~~~---------~--~~~~~~~~~d~---------~m~~----------~~~~g~~rt~~e~~~ll~~AG 344 (364)
T 3p9c_A 295 VLVQCILPVNPEA---------N--PSSQGVFHVDM---------IMLA----------HNPGGRERYEREFQALARGAG 344 (364)
T ss_dssp EEEECCBCSSCCS---------S--HHHHHHHHHHH---------HHHH----------HCSSCCCCBHHHHHHHHHHTT
T ss_pred EEEEeccCCCCCc---------c--hhhhhHHHhHH---------HHHh----------cccCCccCCHHHHHHHHHHCC
Confidence 66 6642111000 0 0000 000111 0000 000114578999999999999
Q ss_pred CcEEEEEe
Q 045407 352 FRSVHFWL 359 (382)
Q Consensus 352 F~~V~v~~ 359 (382)
|+.++++-
T Consensus 345 F~~v~~~~ 352 (364)
T 3p9c_A 345 FTGVKSTY 352 (364)
T ss_dssp CCEEEEEE
T ss_pred CceEEEEE
Confidence 99999863
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=138.59 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=116.3
Q ss_pred CCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcc
Q 045407 79 DMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNL 158 (382)
Q Consensus 79 ~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~ 158 (382)
..|.....|...|..... ..+..++..|..-..+.+|||+|||||.++..++++++..+++|+|+ +.|++.|++.
T Consensus 177 ~~~~~~~~f~~~m~~~~~--~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-- 251 (372)
T 1fp1_D 177 KDKKMNQIFNKSMVDVCA--TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-- 251 (372)
T ss_dssp SCHHHHHHHHHHHHHHHH--HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--
T ss_pred hCHHHHHHHHHHHHhhhH--HHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--
Confidence 345555666666532111 12234444432123356899999999999999999998889999999 9999766542
Q ss_pred ccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccE
Q 045407 159 NKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDI 238 (382)
Q Consensus 159 ~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDi 238 (382)
.+|.++++|+.+ + .+.||+
T Consensus 252 --------~~v~~~~~d~~~-~----------------------------------------------------~~~~D~ 270 (372)
T 1fp1_D 252 --------SGIEHVGGDMFA-S----------------------------------------------------VPQGDA 270 (372)
T ss_dssp --------TTEEEEECCTTT-C----------------------------------------------------CCCEEE
T ss_pred --------CCCEEEeCCccc-C----------------------------------------------------CCCCCE
Confidence 369999999976 3 233899
Q ss_pred EEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEE-eecccccccceEEEEE
Q 045407 239 ICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVW-EQAEFDIIERKTRISL 316 (382)
Q Consensus 239 V~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvW-eq~~fD~~~~~~ri~L 316 (382)
|++.+ ++.++. ..+....|++++++|+ |||.||+ |......... . +.| ....+|..
T Consensus 271 v~~~~-~lh~~~-d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~---------~--~~~~~~~~~d~~-------- 328 (372)
T 1fp1_D 271 MILKA-VCHNWS-DEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNT---------S--EESKLVSTLDNL-------- 328 (372)
T ss_dssp EEEES-SGGGSC-HHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCS---------S--HHHHHHHHHHHH--------
T ss_pred EEEec-ccccCC-HHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCcc---------c--hHHHHHHHhhHH--------
Confidence 99875 454444 4567799999999999 9998887 6542111000 0 000 00001100
Q ss_pred EEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEe
Q 045407 317 HFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 317 ~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~ 359 (382)
+.... ..+.|+.+|++.+|++|||+.++++.
T Consensus 329 -~~~~~-----------~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 329 -MFITV-----------GGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp -HHHHH-----------SCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred -HHhcc-----------CCccCCHHHHHHHHHHCCCceEEEEE
Confidence 00000 11456999999999999999999873
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-14 Score=129.35 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=84.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..+++.|. +|+|+|+|+.||+.|+++... .+ .++.++++|+.++.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~----~~-~~~~~~~~d~~~~~------------- 180 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEK----EN-LNISTALYDINAAN------------- 180 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH----TT-CCEEEEECCGGGCC-------------
T ss_pred CCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHH----cC-CceEEEEecccccc-------------
Confidence 45799999999999999999985 799999999999999998532 12 37999999987655
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ..+||+|++.. ++.|+ +.+++..+++.++++|+ |||+|
T Consensus 181 ----~----------------------------------~~~fD~i~~~~-~~~~~-~~~~~~~~l~~~~~~Lk-pgG~l 219 (286)
T 3m70_A 181 ----I----------------------------------QENYDFIVSTV-VFMFL-NRERVPSIIKNMKEHTN-VGGYN 219 (286)
T ss_dssp ----C----------------------------------CSCEEEEEECS-SGGGS-CGGGHHHHHHHHHHTEE-EEEEE
T ss_pred ----c----------------------------------cCCccEEEEcc-chhhC-CHHHHHHHHHHHHHhcC-CCcEE
Confidence 1 46799999976 66665 55788999999999999 99997
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 220 ~i 221 (286)
T 3m70_A 220 LI 221 (286)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=118.37 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=85.9
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..+++. ++..+|+|+|+|+.|++.|+++... .+ -..++.++++|+.++..
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~--~~~~v~~~~~d~~~~~~------------ 88 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD-LN--LIDRVTLIKDGHQNMDK------------ 88 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHH-TT--CGGGEEEECSCGGGGGG------------
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cC--CCCCeEEEECCHHHHhh------------
Confidence 57999999999999999998 3445899999999999999998532 11 12479999999876541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch-----hcccCChhHHHHHHHHHHhhccC
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS-----CCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S-----~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
+...+||+|++..-. ...+....+...+++.+++.|+
T Consensus 89 -------------------------------------~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk- 130 (197)
T 3eey_A 89 -------------------------------------YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLV- 130 (197)
T ss_dssp -------------------------------------TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEE-
T ss_pred -------------------------------------hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCc-
Confidence 113579999865311 1233455677889999999999
Q ss_pred CCcEEEEeccCC
Q 045407 269 KGGIFVMDLYGG 280 (382)
Q Consensus 269 pGGiFVfDl~gg 280 (382)
|||+|++-.+.+
T Consensus 131 ~gG~l~~~~~~~ 142 (197)
T 3eey_A 131 TGGIITVVIYYG 142 (197)
T ss_dssp EEEEEEEEECCB
T ss_pred CCCEEEEEEccC
Confidence 999999976543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=130.61 Aligned_cols=151 Identities=16% Similarity=0.115 Sum_probs=102.5
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..++++.+..+++|+|+ +.++. +++ ....+ ...||.++++|+.++.
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~-~~~~~--~~~~v~~~~~d~~~~~------------ 245 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHR-LDAPD--VAGRWKVVEGDFLREV------------ 245 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCC-CCCGG--GTTSEEEEECCTTTCC------------
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccc-ccccC--CCCCeEEEecCCCCCC------------
Confidence 356899999999999999999998889999999 45555 222 11111 1248999999986322
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+.||+|++.+ ++.++ ..++....|++++++|+ |||.
T Consensus 246 -----------------------------------------p~~D~v~~~~-vlh~~-~d~~~~~~L~~~~~~Lk-pgG~ 281 (348)
T 3lst_A 246 -----------------------------------------PHADVHVLKR-ILHNW-GDEDSVRILTNCRRVMP-AHGR 281 (348)
T ss_dssp -----------------------------------------CCCSEEEEES-CGGGS-CHHHHHHHHHHHHHTCC-TTCE
T ss_pred -----------------------------------------CCCcEEEEeh-hccCC-CHHHHHHHHHHHHHhcC-CCCE
Confidence 3799999886 44443 34567899999999999 9999
Q ss_pred EEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 273 FVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 273 FVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
||+ |........ +.+ ...+|. ..... ..-+.++..|++++|++||
T Consensus 282 l~i~e~~~~~~~~---------~~~-----~~~~d~---------~~~~~-----------~~~~~~t~~e~~~ll~~aG 327 (348)
T 3lst_A 282 VLVIDAVVPEGND---------AHQ-----SKEMDF---------MMLAA-----------RTGQERTAAELEPLFTAAG 327 (348)
T ss_dssp EEEEECCBCSSSS---------CCH-----HHHHHH---------HHHHT-----------TSCCCCBHHHHHHHHHHTT
T ss_pred EEEEEeccCCCCC---------cch-----hhhcCh---------hhhhc-----------CCCcCCCHHHHHHHHHHCC
Confidence 977 553211100 000 001110 00000 1125688999999999999
Q ss_pred CcEEEEEe
Q 045407 352 FRSVHFWL 359 (382)
Q Consensus 352 F~~V~v~~ 359 (382)
|+.++++-
T Consensus 328 f~~~~~~~ 335 (348)
T 3lst_A 328 LRLDRVVG 335 (348)
T ss_dssp EEEEEEEE
T ss_pred CceEEEEE
Confidence 99999974
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-14 Score=125.11 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHHhhCC-CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 94 PKGDISYLQKFFLIYVGG-RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~gg-r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
|..+...+...+...... ..+.+|||+|||||.++..+++.++..+|+|+|+|+.|++.|+++... .+ .++.++
T Consensus 10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~~-~~~~~~ 84 (215)
T 4dzr_A 10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER----FG-AVVDWA 84 (215)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CC
T ss_pred CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH----hC-CceEEE
Confidence 455555555555444433 446789999999999999999998767899999999999999987532 12 278889
Q ss_pred eccCCCc
Q 045407 173 HGNVLQP 179 (382)
Q Consensus 173 ~gDV~~~ 179 (382)
++|+.++
T Consensus 85 ~~d~~~~ 91 (215)
T 4dzr_A 85 AADGIEW 91 (215)
T ss_dssp HHHHHHH
T ss_pred EcchHhh
Confidence 9998763
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=125.29 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
.+...+...+..... ..+.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|+++... . +..++.++++|
T Consensus 93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~-~---~~~~v~~~~~d 167 (276)
T 2b3t_A 93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH-L---AIKNIHILQSD 167 (276)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH-H---TCCSEEEECCS
T ss_pred chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-c---CCCceEEEEcc
Confidence 344444444433333 335689999999999999999886667899999999999999998532 1 22369999999
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc------
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL------ 249 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL------ 249 (382)
+.++. ..++||+|++.. .|...
T Consensus 168 ~~~~~---------------------------------------------------~~~~fD~Iv~np-Py~~~~~~~l~ 195 (276)
T 2b3t_A 168 WFSAL---------------------------------------------------AGQQFAMIVSNP-PYIDEQDPHLQ 195 (276)
T ss_dssp TTGGG---------------------------------------------------TTCCEEEEEECC-CCBCTTCHHHH
T ss_pred hhhhc---------------------------------------------------ccCCccEEEECC-CCCCccccccC
Confidence 86543 135699999842 11111
Q ss_pred -----CC-----------hhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 250 -----HK-----------RADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 250 -----~~-----------r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+. .+.+...++.+++.|+ |||++++.+
T Consensus 196 ~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~ 238 (276)
T 2b3t_A 196 QGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEH 238 (276)
T ss_dssp SSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEEC
T ss_pred hhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 11 1466889999999999 999999853
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=120.42 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=83.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++..+..+|+|||+|+.||+.|+++... .+..+|.++++|+.++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~----~~~~~v~~~~~d~~~~~~------------ 105 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE----VGVPNIKLLWVDGSDLTD------------ 105 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH----HCCSSEEEEECCSSCGGG------------
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHH----cCCCCEEEEeCCHHHHHh------------
Confidence 3469999999999999999998777999999999999999998533 122479999999977541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh-----HHHHHHHHHHhhccC
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA-----DLVLYFKHVLHALSK 268 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~-----dL~~yFr~V~~~L~~ 268 (382)
. +....||+|++.+ ..-+...+. .....++.++++|+
T Consensus 106 ----~--------------------------------~~~~~~D~i~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~Lk- 147 (214)
T 1yzh_A 106 ----Y--------------------------------FEDGEIDRLYLNF-SDPWPKKRHEKRRLTYKTFLDTFKRILP- 147 (214)
T ss_dssp ----T--------------------------------SCTTCCSEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHSC-
T ss_pred ----h--------------------------------cCCCCCCEEEEEC-CCCccccchhhhccCCHHHHHHHHHHcC-
Confidence 0 2245699999764 332322221 24578999999999
Q ss_pred CCcEEEEec
Q 045407 269 KGGIFVMDL 277 (382)
Q Consensus 269 pGGiFVfDl 277 (382)
|||+|++-.
T Consensus 148 pgG~l~~~~ 156 (214)
T 1yzh_A 148 ENGEIHFKT 156 (214)
T ss_dssp TTCEEEEEE
T ss_pred CCcEEEEEe
Confidence 999999954
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=126.41 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=84.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...|||+|||||.++..+|+..+...|+|||+|++||+.|+++... .+..+|.++++|+.++.. .
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~----~~l~nv~~~~~Da~~~l~-~---------- 99 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE----EGLSNLRVMCHDAVEVLH-K---------- 99 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH----TTCSSEEEECSCHHHHHH-H----------
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH----hCCCcEEEEECCHHHHHH-H----------
Confidence 3468999999999999999999888999999999999999988532 233469999999876420 0
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH-----HHHHHHHHhhccC
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL-----VLYFKHVLHALSK 268 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL-----~~yFr~V~~~L~~ 268 (382)
. +....+|.|++++ +.-|...+... ..+++.+++.|+
T Consensus 100 ----~--------------------------------~~~~~~d~v~~~~-~~p~~~~~~~~rr~~~~~~l~~~~r~Lk- 141 (218)
T 3dxy_A 100 ----M--------------------------------IPDNSLRMVQLFF-PDPWHKARHNKRRIVQVPFAELVKSKLQ- 141 (218)
T ss_dssp ----H--------------------------------SCTTCEEEEEEES-CCCCCSGGGGGGSSCSHHHHHHHHHHEE-
T ss_pred ----H--------------------------------cCCCChheEEEeC-CCCccchhhhhhhhhhHHHHHHHHHHcC-
Confidence 0 1246799998763 44444443322 258999999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||+|+|-..
T Consensus 142 pGG~l~i~td 151 (218)
T 3dxy_A 142 LGGVFHMATD 151 (218)
T ss_dssp EEEEEEEEES
T ss_pred CCcEEEEEeC
Confidence 9999999554
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=119.48 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCc-ceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYS-RISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~-RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++.+ .+|+|||+|++|++.|+++... . +.. ++.++++|+.+...
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~-~---g~~~~v~~~~~d~~~~~~----------- 118 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDT-Y---GLSPRMRAVQGTAPAALA----------- 118 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-T---TCTTTEEEEESCTTGGGT-----------
T ss_pred CCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH-c---CCCCCEEEEeCchhhhcc-----------
Confidence 4579999999999999999995 5799999999999999998532 1 223 79999999876330
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
..+.||+|++.. ++ +.. +++.+++.|+ |||+
T Consensus 119 ---------------------------------------~~~~~D~v~~~~-~~-------~~~-~l~~~~~~Lk-pgG~ 149 (204)
T 3njr_A 119 ---------------------------------------DLPLPEAVFIGG-GG-------SQA-LYDRLWEWLA-PGTR 149 (204)
T ss_dssp ---------------------------------------TSCCCSEEEECS-CC-------CHH-HHHHHHHHSC-TTCE
T ss_pred ---------------------------------------cCCCCCEEEECC-cc-------cHH-HHHHHHHhcC-CCcE
Confidence 135699999755 22 334 8999999999 9999
Q ss_pred EEEeccC
Q 045407 273 FVMDLYG 279 (382)
Q Consensus 273 FVfDl~g 279 (382)
||+....
T Consensus 150 lv~~~~~ 156 (204)
T 3njr_A 150 IVANAVT 156 (204)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 9997754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=113.85 Aligned_cols=103 Identities=24% Similarity=0.265 Sum_probs=79.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCc-ceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYS-RISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~-RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||.++..+++..+..+|+|+|+|+.|++.|+++... .+.. ++ ++++|+.+...
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~~~~~~~-~~~~d~~~~~~----------- 89 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAIN----LGVSDRI-AVQQGAPRAFD----------- 89 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT----TTCTTSE-EEECCTTGGGG-----------
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH----hCCCCCE-EEecchHhhhh-----------
Confidence 4589999999999999999996557899999999999999998532 1222 68 88988754320
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. ..+.||+|++.. ++.+ ..+++.+++.|+ |||+
T Consensus 90 -----~---------------------------------~~~~~D~i~~~~-~~~~-------~~~l~~~~~~L~-~gG~ 122 (178)
T 3hm2_A 90 -----D---------------------------------VPDNPDVIFIGG-GLTA-------PGVFAAAWKRLP-VGGR 122 (178)
T ss_dssp -----G---------------------------------CCSCCSEEEECC--TTC-------TTHHHHHHHTCC-TTCE
T ss_pred -----c---------------------------------cCCCCCEEEECC-cccH-------HHHHHHHHHhcC-CCCE
Confidence 0 026799999765 3322 678899999999 9999
Q ss_pred EEEeccC
Q 045407 273 FVMDLYG 279 (382)
Q Consensus 273 FVfDl~g 279 (382)
+++....
T Consensus 123 l~~~~~~ 129 (178)
T 3hm2_A 123 LVANAVT 129 (178)
T ss_dssp EEEEECS
T ss_pred EEEEeec
Confidence 9996653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=122.56 Aligned_cols=104 Identities=9% Similarity=0.017 Sum_probs=78.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++.....+|+|||+|+.||+.+.+++.. ..++.++++|+.++..
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~------~~~v~~~~~d~~~~~~------------- 119 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWK------------- 119 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGG-------------
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc------CCCeEEEEcCCCCchh-------------
Confidence 479999999999999999886556899999999988766554321 1368889999877630
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. ..+ ...||+|++. +....+...++++++++|+ |||+|+
T Consensus 120 ---~------------------------------~~~-~~~fD~V~~~------~~~~~~~~~~l~~~~r~Lk-pgG~l~ 158 (210)
T 1nt2_A 120 ---Y------------------------------SGI-VEKVDLIYQD------IAQKNQIEILKANAEFFLK-EKGEVV 158 (210)
T ss_dssp ---T------------------------------TTT-CCCEEEEEEC------CCSTTHHHHHHHHHHHHEE-EEEEEE
T ss_pred ---h------------------------------ccc-ccceeEEEEe------ccChhHHHHHHHHHHHHhC-CCCEEE
Confidence 0 001 3579999875 2333555667999999999 999999
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+.+.
T Consensus 159 i~~~ 162 (210)
T 1nt2_A 159 IMVK 162 (210)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9863
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=122.07 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=82.0
Q ss_pred CCCCcccccCCCccHhHHHHHHh--CCCCeEEEEeCCHHHHHHHHHhccccc--cCCCCcc-------------------
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRS--DSRRTAVGLDLDLEALEWCMENNLNKV--GADGYSR------------------- 168 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~--g~~~tVvGVDLS~emL~~A~e~~~~kl--~~d~~~R------------------- 168 (382)
..+.+|||+|||||.++..+++. .+..+|+|+|+|+.||+.|+++..... +- ..+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 127 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQSERFGKPSYLEA 127 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhhhhcccccchhh
Confidence 34578999999999999999988 444589999999999999998743210 00 002
Q ss_pred ------eE-------------EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCcc
Q 045407 169 ------IS-------------LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQ 229 (382)
Q Consensus 169 ------I~-------------l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (382)
|. ++++|+.++..... +
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~-------------~------------------------------- 163 (250)
T 1o9g_A 128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSA-------------V------------------------------- 163 (250)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHH-------------H-------------------------------
T ss_pred hhhhhhhhhhccccccccccceeeccccccccccc-------------c-------------------------------
Confidence 56 88899876431000 0
Q ss_pred CCCCCCccEEEEccchhcccCC------hhHHHHHHHHHHhhccCCCcEEEE
Q 045407 230 KSSLPARDIICAFNYSCCCLHK------RADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 230 ~~~~~~fDiV~afn~S~~yL~~------r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
....+||+|+|-. .+.+... .+....+|+.++++|+ |||++++
T Consensus 164 -~~~~~fD~Iv~np-p~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~ 212 (250)
T 1o9g_A 164 -LAGSAPDVVLTDL-PYGERTHWEGQVPGQPVAGLLRSLASALP-AHAVIAV 212 (250)
T ss_dssp -HTTCCCSEEEEEC-CGGGSSSSSSCCCHHHHHHHHHHHHHHSC-TTCEEEE
T ss_pred -cCCCCceEEEeCC-CeeccccccccccccHHHHHHHHHHHhcC-CCcEEEE
Confidence 0023699999853 4444443 4677899999999999 9999998
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-13 Score=114.89 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=82.0
Q ss_pred CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 93 SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 93 ~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
-|..+...+.+.+... ...+.+|||+|||||.++..+++++ +|+|||+|+.|++. . .++.++
T Consensus 5 ~P~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~----------~~~~~~ 66 (170)
T 3q87_B 5 EPGEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---H----------RGGNLV 66 (170)
T ss_dssp CCCHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---C----------SSSCEE
T ss_pred CcCccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---c----------cCCeEE
Confidence 3666666666665432 1224579999999999999999998 79999999999986 1 368899
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
++|+.++. ...+||+|++ |..+.+..+.
T Consensus 67 ~~d~~~~~---------------------------------------------------~~~~fD~i~~-n~~~~~~~~~ 94 (170)
T 3q87_B 67 RADLLCSI---------------------------------------------------NQESVDVVVF-NPPYVPDTDD 94 (170)
T ss_dssp ECSTTTTB---------------------------------------------------CGGGCSEEEE-CCCCBTTCCC
T ss_pred ECChhhhc---------------------------------------------------ccCCCCEEEE-CCCCccCCcc
Confidence 99997744 1356999998 4444432222
Q ss_pred ------hHHHHHHHHHHhhccCCCcEEEEec
Q 045407 253 ------ADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 253 ------~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.+....++.+.+.| |||+|++=.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l--pgG~l~~~~ 123 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV--TVGMLYLLV 123 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC--CSSEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC--CCCEEEEEE
Confidence 23466788888888 799988843
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-14 Score=134.75 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=102.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..++++.+..+++|+|+ +.|++.|++. .+|.++++|+.+ +
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~-~------------- 243 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFT-S------------- 243 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTT-C-------------
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccC-C-------------
Confidence 46899999999999999999988789999999 9999866542 259999999865 3
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC---C
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK---G 270 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p---G 270 (382)
.+.||+|++.+ ++.++. ..+....|++++++|+ | |
T Consensus 244 ---------------------------------------~p~~D~v~~~~-~lh~~~-d~~~~~~l~~~~~~L~-p~~~g 281 (352)
T 1fp2_A 244 ---------------------------------------IPNADAVLLKY-ILHNWT-DKDCLRILKKCKEAVT-NDGKR 281 (352)
T ss_dssp ---------------------------------------CCCCSEEEEES-CGGGSC-HHHHHHHHHHHHHHHS-GGGCC
T ss_pred ---------------------------------------CCCccEEEeeh-hhccCC-HHHHHHHHHHHHHhCC-CCCCC
Confidence 23499999876 555544 4567799999999999 8 9
Q ss_pred cEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHH
Q 045407 271 GIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEE 349 (382)
Q Consensus 271 GiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Lee 349 (382)
|.+|+ |......... +. +.|....+|.. ++. +. -+.++.+|++++|++
T Consensus 282 G~l~i~e~~~~~~~~~--------~~--~~~~~~~~d~~-----------------~~~--~~--g~~~t~~e~~~ll~~ 330 (352)
T 1fp2_A 282 GKVTIIDMVIDKKKDE--------NQ--VTQIKLLMDVN-----------------MAC--LN--GKERNEEEWKKLFIE 330 (352)
T ss_dssp CEEEEEECEECTTTSC--------HH--HHHHHHHHHHH-----------------GGG--GT--CCCEEHHHHHHHHHH
T ss_pred cEEEEEEeecCCCCCc--------cc--hhhhHhhccHH-----------------HHh--cc--CCCCCHHHHHHHHHH
Confidence 98776 6542211100 00 00000011110 000 00 145689999999999
Q ss_pred cCCcEEEEEe
Q 045407 350 AGFRSVHFWL 359 (382)
Q Consensus 350 AGF~~V~v~~ 359 (382)
|||+.++++.
T Consensus 331 aGf~~~~~~~ 340 (352)
T 1fp2_A 331 AGFQHYKISP 340 (352)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCeeEEEe
Confidence 9999999874
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=133.57 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=85.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.|. .+|+|||+| +||+.|+++.... + -..+|.++++|+.+++
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~-~~v~gvD~s-~~l~~a~~~~~~~-~--~~~~v~~~~~d~~~~~------------- 128 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA-RKVIGIECS-SISDYAVKIVKAN-K--LDHVVTIIKGKVEEVE------------- 128 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC-SEEEEEECS-THHHHHHHHHHHT-T--CTTTEEEEESCTTTCC-------------
T ss_pred CCEEEEEeccchHHHHHHHHCCC-CEEEEECcH-HHHHHHHHHHHHc-C--CCCcEEEEECcHHHcc-------------
Confidence 34799999999999999999975 489999999 5999999875331 1 1236999999998775
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ +..+||+|++..- ..+++....+..+++.+.+.|+ |||+|
T Consensus 129 ----~---------------------------------~~~~fD~Iis~~~-~~~l~~~~~~~~~l~~~~r~Lk-pgG~l 169 (349)
T 3q7e_A 129 ----L---------------------------------PVEKVDIIISEWM-GYCLFYESMLNTVLHARDKWLA-PDGLI 169 (349)
T ss_dssp ----C---------------------------------SSSCEEEEEECCC-BBTBTBTCCHHHHHHHHHHHEE-EEEEE
T ss_pred ----C---------------------------------CCCceEEEEEccc-cccccCchhHHHHHHHHHHhCC-CCCEE
Confidence 2 2467999999542 2335556788899999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|++..
T Consensus 170 i~~~~ 174 (349)
T 3q7e_A 170 FPDRA 174 (349)
T ss_dssp ESCEE
T ss_pred ccccc
Confidence 87643
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=123.94 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.++..+.... .+.+|||+|||||.++..+++..+..+|+|||+|++|++.|+++... .+- ..+|.++++|+.+
T Consensus 61 ~~l~~~~~~~----~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~v~~~~~d~~~ 133 (232)
T 3ntv_A 61 DLIKQLIRMN----NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLAT-YHF--ENQVRIIEGNALE 133 (232)
T ss_dssp HHHHHHHHHH----TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHH-TTC--TTTEEEEESCGGG
T ss_pred HHHHHHHhhc----CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECCHHH
Confidence 4555555432 24579999999999999999966667999999999999999998532 111 1379999999876
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
..... + ..+||+|++.. .......+
T Consensus 134 ~~~~~--------------~----------------------------------~~~fD~V~~~~-------~~~~~~~~ 158 (232)
T 3ntv_A 134 QFENV--------------N----------------------------------DKVYDMIFIDA-------AKAQSKKF 158 (232)
T ss_dssp CHHHH--------------T----------------------------------TSCEEEEEEET-------TSSSHHHH
T ss_pred HHHhh--------------c----------------------------------cCCccEEEEcC-------cHHHHHHH
Confidence 53000 0 35799998543 23457789
Q ss_pred HHHHHhhccCCCcEEEEe
Q 045407 259 FKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfD 276 (382)
|+.+++.|+ |||+||+|
T Consensus 159 l~~~~~~Lk-pgG~lv~d 175 (232)
T 3ntv_A 159 FEIYTPLLK-HQGLVITD 175 (232)
T ss_dssp HHHHGGGEE-EEEEEEEE
T ss_pred HHHHHHhcC-CCeEEEEe
Confidence 999999999 99999996
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-14 Score=126.31 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=80.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+|+|||+|+.|++.|+++... . +..+|.++++|+.++...
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~---~~~~v~~~~~d~~~~~~~----------- 135 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA-L---QLENTTFCHDRAETFGQR----------- 135 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-H---TCSSEEEEESCHHHHTTC-----------
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-c---CCCCEEEEeccHHHhccc-----------
Confidence 4579999999999999999766667899999999999999987532 1 223699999998654400
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ....+||+|+|.. + .++..+++.+++.|+ |||+|
T Consensus 136 ----~--------------------------------~~~~~fD~V~~~~-----~---~~~~~~l~~~~~~Lk-pgG~l 170 (240)
T 1xdz_A 136 ----K--------------------------------DVRESYDIVTARA-----V---ARLSVLSELCLPLVK-KNGLF 170 (240)
T ss_dssp ----T--------------------------------TTTTCEEEEEEEC-----C---SCHHHHHHHHGGGEE-EEEEE
T ss_pred ----c--------------------------------cccCCccEEEEec-----c---CCHHHHHHHHHHhcC-CCCEE
Confidence 0 0035799999865 1 457889999999999 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 171 ~~ 172 (240)
T 1xdz_A 171 VA 172 (240)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=121.33 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=81.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+|+..+...|+|||+|+.||+.|+++... .+..+|.++++|+.++..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~----~~~~nv~~~~~d~~~l~~------------- 102 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD----SEAQNVKLLNIDADTLTD------------- 102 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH----SCCSSEEEECCCGGGHHH-------------
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH----cCCCCEEEEeCCHHHHHh-------------
Confidence 468999999999999999997778999999999999999998532 123479999999876431
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh-----HHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA-----DLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~-----dL~~yFr~V~~~L~~p 269 (382)
. +....||.|++.+ +.-|...+. ....+++.+++.|+ |
T Consensus 103 ---~--------------------------------~~~~~~d~v~~~~-~~p~~~~~~~~~rl~~~~~l~~~~~~Lk-p 145 (213)
T 2fca_A 103 ---V--------------------------------FEPGEVKRVYLNF-SDPWPKKRHEKRRLTYSHFLKKYEEVMG-K 145 (213)
T ss_dssp ---H--------------------------------CCTTSCCEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHHT-T
T ss_pred ---h--------------------------------cCcCCcCEEEEEC-CCCCcCccccccccCcHHHHHHHHHHcC-C
Confidence 0 2245689887643 322322211 13678999999999 9
Q ss_pred CcEEEEec
Q 045407 270 GGIFVMDL 277 (382)
Q Consensus 270 GGiFVfDl 277 (382)
||+|++-.
T Consensus 146 gG~l~~~t 153 (213)
T 2fca_A 146 GGSIHFKT 153 (213)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEe
Confidence 99999955
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.2e-13 Score=133.97 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcc------ccccCCCCcceEEE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNL------NKVGADGYSRISLF 172 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~------~kl~~d~~~RI~l~ 172 (382)
..+.+++.. ++-....+|||+|||||.++..+|+......|+|||+|++|+++|+++.. ...+- ...+|.|+
T Consensus 160 ~~i~~il~~-l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-~~~rVefi 237 (438)
T 3uwp_A 160 DLVAQMIDE-IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLE 237 (438)
T ss_dssp HHHHHHHHH-HCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB-CCCEEEEE
T ss_pred HHHHHHHHh-cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEEE
Confidence 345666654 33333467999999999999999976443469999999999999998531 11111 12489999
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
+||+.++++... ...+|+|++-++ + | .
T Consensus 238 ~GD~~~lp~~d~------------------------------------------------~~~aDVVf~Nn~-~--F--~ 264 (438)
T 3uwp_A 238 RGDFLSEEWRER------------------------------------------------IANTSVIFVNNF-A--F--G 264 (438)
T ss_dssp ECCTTSHHHHHH------------------------------------------------HHTCSEEEECCT-T--C--C
T ss_pred ECcccCCccccc------------------------------------------------cCCccEEEEccc-c--c--C
Confidence 999998873100 246899997543 2 2 2
Q ss_pred hHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
.++...|+.+++.|+ |||+||+ +.+
T Consensus 265 pdl~~aL~Ei~RvLK-PGGrIVssE~f 290 (438)
T 3uwp_A 265 PEVDHQLKERFANMK-EGGRIVSSKPF 290 (438)
T ss_dssp HHHHHHHHHHHTTSC-TTCEEEESSCS
T ss_pred chHHHHHHHHHHcCC-CCcEEEEeecc
Confidence 688999999999999 9999998 554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=117.49 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=80.8
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||.++..+++.-+ ..+|+|+|+|++|++.|+++... .+- ..+|.++++|+.+... .
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~v~~~~~d~~~~~~-~--------- 125 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER-ANL--NDRVEVRTGLALDSLQ-Q--------- 125 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHH-TTC--TTTEEEEESCHHHHHH-H---------
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEEcCHHHHHH-H---------
Confidence 45799999999999999999844 46899999999999999987532 111 2379999999865431 0
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+. . ....+||+|++-.. ......+|+.+++.|+ |||+
T Consensus 126 -----~~----------------~--------------~~~~~fD~v~~d~~-------~~~~~~~l~~~~~~L~-pgG~ 162 (223)
T 3duw_A 126 -----IE----------------N--------------EKYEPFDFIFIDAD-------KQNNPAYFEWALKLSR-PGTV 162 (223)
T ss_dssp -----HH----------------H--------------TTCCCCSEEEECSC-------GGGHHHHHHHHHHTCC-TTCE
T ss_pred -----HH----------------h--------------cCCCCcCEEEEcCC-------cHHHHHHHHHHHHhcC-CCcE
Confidence 00 0 00256999986532 3466789999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
+|+|
T Consensus 163 lv~~ 166 (223)
T 3duw_A 163 IIGD 166 (223)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=128.52 Aligned_cols=135 Identities=18% Similarity=0.113 Sum_probs=94.2
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC
Q 045407 84 FLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA 163 (382)
Q Consensus 84 ~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~ 163 (382)
+..+....++..-...|...+... .....+.+|||+|||||.++..+++.|. .+|+|||+|+ |++.|+++... .+
T Consensus 36 ~~~~~~ml~d~~r~~~~~~~i~~~-~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~v~gvD~s~-~~~~a~~~~~~-~~- 110 (340)
T 2fyt_A 36 YGIHEEMLKDKIRTESYRDFIYQN-PHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRL-NK- 110 (340)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHC-GGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESST-HHHHHHHHHHH-TT-
T ss_pred hhHHHHHhcCHHHHHHHHHHHHhh-hhhcCCCEEEEeeccCcHHHHHHHHcCC-CEEEEEChHH-HHHHHHHHHHH-cC-
Confidence 334444444444334444444432 2223346799999999999999999975 4899999996 99999987532 11
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
-..+|.++++|+.++. + ...+||+|++..
T Consensus 111 -~~~~i~~~~~d~~~~~-----------------~---------------------------------~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 111 -LEDTITLIKGKIEEVH-----------------L---------------------------------PVEKVDVIISEW 139 (340)
T ss_dssp -CTTTEEEEESCTTTSC-----------------C---------------------------------SCSCEEEEEECC
T ss_pred -CCCcEEEEEeeHHHhc-----------------C---------------------------------CCCcEEEEEEcC
Confidence 1147999999998765 2 235799999854
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
-. .++....++..+++.+++.|+ |||+||.+
T Consensus 140 ~~-~~l~~~~~~~~~l~~~~~~Lk-pgG~lip~ 170 (340)
T 2fyt_A 140 MG-YFLLFESMLDSVLYAKNKYLA-KGGSVYPD 170 (340)
T ss_dssp CB-TTBTTTCHHHHHHHHHHHHEE-EEEEEESC
T ss_pred ch-hhccCHHHHHHHHHHHHhhcC-CCcEEEcc
Confidence 22 224455678889999999999 99999843
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-13 Score=128.44 Aligned_cols=104 Identities=10% Similarity=0.003 Sum_probs=81.8
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..++.+-+..+|+|||+|++||+.|+++... . +..+|.++++|+.+++
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~-~---gl~~v~~v~gDa~~l~----------- 185 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG-L---GVDGVNVITGDETVID----------- 185 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH-H---TCCSEEEEESCGGGGG-----------
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh-c---CCCCeEEEECchhhCC-----------
Confidence 446789999999998776655554457899999999999999998532 1 2258999999986654
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
..+||+|++... .++...+|++++++|+ |||
T Consensus 186 -----------------------------------------d~~FDvV~~~a~-------~~d~~~~l~el~r~Lk-PGG 216 (298)
T 3fpf_A 186 -----------------------------------------GLEFDVLMVAAL-------AEPKRRVFRNIHRYVD-TET 216 (298)
T ss_dssp -----------------------------------------GCCCSEEEECTT-------CSCHHHHHHHHHHHCC-TTC
T ss_pred -----------------------------------------CCCcCEEEECCC-------ccCHHHHHHHHHHHcC-CCc
Confidence 367999987432 2577899999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
+||+....
T Consensus 217 ~Lvv~~~~ 224 (298)
T 3fpf_A 217 RIIYRTYT 224 (298)
T ss_dssp EEEEEECC
T ss_pred EEEEEcCc
Confidence 99997654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=128.64 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=80.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..|.+|||+|||+|.++.++++..+..+|+|||+|+.|+++|+++...-.......++.++++|+.++..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~---------- 163 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR---------- 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----------
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH----------
Confidence 3467899999999999999998865568999999999999999975210000112589999999866541
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccCC
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSKK 269 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~p 269 (382)
. ....+||+|++-... .......| ..+|+.++++|+ |
T Consensus 164 ------~--------------------------------~~~~~fDvIi~d~~~--~~~~~~~l~~~~~l~~~~~~Lk-p 202 (304)
T 3bwc_A 164 ------Q--------------------------------TPDNTYDVVIIDTTD--PAGPASKLFGEAFYKDVLRILK-P 202 (304)
T ss_dssp ------S--------------------------------SCTTCEEEEEEECC-----------CCHHHHHHHHHHEE-E
T ss_pred ------h--------------------------------ccCCceeEEEECCCC--ccccchhhhHHHHHHHHHHhcC-C
Confidence 0 013579999984322 22222333 688999999999 9
Q ss_pred CcEEEEe
Q 045407 270 GGIFVMD 276 (382)
Q Consensus 270 GGiFVfD 276 (382)
||+|++-
T Consensus 203 gG~lv~~ 209 (304)
T 3bwc_A 203 DGICCNQ 209 (304)
T ss_dssp EEEEEEE
T ss_pred CcEEEEe
Confidence 9999985
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-14 Score=129.24 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=38.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..+|||+|||||.++..+++.|. .+|+|||+|+.||++|+++.
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~ 80 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSD 80 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTC
T ss_pred CCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhC
Confidence 35799999999999999999985 38999999999999998874
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-12 Score=114.76 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG 174 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g 174 (382)
....++..+.... .+.+|||+|||||.++..|++.- +..+|+|||+|++|++.|+++... .+- ..+|.++++
T Consensus 45 ~~~~~l~~l~~~~----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~v~~~~~ 117 (221)
T 3u81_A 45 AKGQIMDAVIREY----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF-AGL--QDKVTILNG 117 (221)
T ss_dssp HHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HTC--GGGEEEEES
T ss_pred HHHHHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHH-cCC--CCceEEEEC
Confidence 3345555544432 25679999999999999999852 246899999999999999997532 111 237999999
Q ss_pred cCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH
Q 045407 175 NVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254 (382)
Q Consensus 175 DV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d 254 (382)
|+.+... . +. ..+...+||+|++-.....| ..
T Consensus 118 d~~~~l~-------------~--~~-----------------------------~~~~~~~fD~V~~d~~~~~~----~~ 149 (221)
T 3u81_A 118 ASQDLIP-------------Q--LK-----------------------------KKYDVDTLDMVFLDHWKDRY----LP 149 (221)
T ss_dssp CHHHHGG-------------G--TT-----------------------------TTSCCCCCSEEEECSCGGGH----HH
T ss_pred CHHHHHH-------------H--HH-----------------------------HhcCCCceEEEEEcCCcccc----hH
Confidence 9755320 0 00 00113679999876544443 45
Q ss_pred HHHHHHHHHhhccCCCcEEEEec
Q 045407 255 LVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVfDl 277 (382)
...+++.+ +.|+ |||+||+|-
T Consensus 150 ~~~~~~~~-~~Lk-pgG~lv~~~ 170 (221)
T 3u81_A 150 DTLLLEKC-GLLR-KGTVLLADN 170 (221)
T ss_dssp HHHHHHHT-TCCC-TTCEEEESC
T ss_pred HHHHHHhc-cccC-CCeEEEEeC
Confidence 55677777 9998 999999964
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-14 Score=127.10 Aligned_cols=63 Identities=10% Similarity=-0.007 Sum_probs=50.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCC-HHHHHHH---HHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLD-LEALEWC---MENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS-~emL~~A---~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+.+|||+|||||.++..++++.+..+|+|||+| +.||+.| +++.. ..+..+|.++++|+.+++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~----~~~~~~v~~~~~d~~~l~ 91 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPS----KGGLSNVVFVIAAAESLP 91 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGG----GTCCSSEEEECCBTTBCC
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHH----HcCCCCeEEEEcCHHHhh
Confidence 457999999999999999987777789999999 7777776 65532 223347999999987665
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=123.46 Aligned_cols=106 Identities=9% Similarity=-0.028 Sum_probs=78.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|+++|. +|+|||+|+.||+.|+++... . ++++++.+.+..
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~-----~-----~v~~~~~~~~~~----------- 102 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALAD-----R-----CVTIDLLDITAE----------- 102 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSS-----S-----CCEEEECCTTSC-----------
T ss_pred cCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHh-----c-----cceeeeeecccc-----------
Confidence 45899999999999999999985 799999999999999998532 1 234444333300
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+. .+ ..++||+|+|.. ++.++. ++++..+++.++++| |||++
T Consensus 103 ----~~-----------------------------~~-~~~~fD~Vv~~~-~l~~~~-~~~~~~~l~~l~~lL--PGG~l 144 (261)
T 3iv6_A 103 ----IP-----------------------------KE-LAGHFDFVLNDR-LINRFT-TEEARRACLGMLSLV--GSGTV 144 (261)
T ss_dssp ----CC-----------------------------GG-GTTCCSEEEEES-CGGGSC-HHHHHHHHHHHHHHH--TTSEE
T ss_pred ----cc-----------------------------cc-cCCCccEEEEhh-hhHhCC-HHHHHHHHHHHHHhC--cCcEE
Confidence 00 00 035799999864 666654 568899999999998 79999
Q ss_pred EEeccCC
Q 045407 274 VMDLYGG 280 (382)
Q Consensus 274 VfDl~gg 280 (382)
++-+..|
T Consensus 145 ~lS~~~g 151 (261)
T 3iv6_A 145 RASVKLG 151 (261)
T ss_dssp EEEEEBS
T ss_pred EEEeccC
Confidence 9976543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-13 Score=127.47 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=94.1
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC
Q 045407 85 LLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD 164 (382)
Q Consensus 85 ~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d 164 (382)
..+....+++.--..|...+... ..-..+.+|||+|||||.++..+++.|. .+|+|||+| +|++.|+++.... +
T Consensus 11 ~~~~~ml~d~~r~~~y~~ai~~~-~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~v~~vD~s-~~~~~a~~~~~~~-~-- 84 (328)
T 1g6q_1 11 GIHEEMLQDTVRTLSYRNAIIQN-KDLFKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMS-SIIEMAKELVELN-G-- 84 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-HHHHTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESS-THHHHHHHHHHHT-T--
T ss_pred hHHHHHhcCHHHHHHHHHHHHhh-HhhcCCCEEEEecCccHHHHHHHHHCCC-CEEEEEChH-HHHHHHHHHHHHc-C--
Confidence 34444555555544554444322 1111235799999999999999999875 489999999 6999999875321 1
Q ss_pred CCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccc
Q 045407 165 GYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNY 244 (382)
Q Consensus 165 ~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~ 244 (382)
-..+|.++++|+.++. + +..+||+|++-.-
T Consensus 85 ~~~~i~~~~~d~~~~~-----------------~---------------------------------~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 85 FSDKITLLRGKLEDVH-----------------L---------------------------------PFPKVDIIISEWM 114 (328)
T ss_dssp CTTTEEEEESCTTTSC-----------------C---------------------------------SSSCEEEEEECCC
T ss_pred CCCCEEEEECchhhcc-----------------C---------------------------------CCCcccEEEEeCc
Confidence 1247999999998765 1 1357999998532
Q ss_pred hhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 245 SCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 245 S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
..++.....+..+++.+.+.|+ |||++|++
T Consensus 115 -~~~l~~~~~~~~~l~~~~~~Lk-pgG~li~~ 144 (328)
T 1g6q_1 115 -GYFLLYESMMDTVLYARDHYLV-EGGLIFPD 144 (328)
T ss_dssp -BTTBSTTCCHHHHHHHHHHHEE-EEEEEESC
T ss_pred -hhhcccHHHHHHHHHHHHhhcC-CCeEEEEe
Confidence 2234556678889999999999 99999854
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=120.70 Aligned_cols=112 Identities=10% Similarity=0.038 Sum_probs=82.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..++++++. +|+|||+|+.|++.|+++... .+ -..++.++++|+.++..
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~-~~--~~~~v~~~~~D~~~~~~------------ 113 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAY-NQ--LEDQIEIIEYDLKKITD------------ 113 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHH-TT--CTTTEEEECSCGGGGGG------------
T ss_pred CCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHH-CC--CcccEEEEECcHHHhhh------------
Confidence 467999999999999999999874 899999999999999998532 11 11379999999977651
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc---cch-hccc------------CChhHHHH
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF---NYS-CCCL------------HKRADLVL 257 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af---n~S-~~yL------------~~r~dL~~ 257 (382)
.+...+||+|++- +.. -..+ ....++..
T Consensus 114 ------------------------------------~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 157 (259)
T 3lpm_A 114 ------------------------------------LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLED 157 (259)
T ss_dssp ------------------------------------TSCTTCEEEEEECCCC-----------------------HHHHH
T ss_pred ------------------------------------hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHH
Confidence 0124679999982 111 0011 12256788
Q ss_pred HHHHHHhhccCCCcEEEEeccC
Q 045407 258 YFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~g 279 (382)
.++.+++.|+ |||+|++ +++
T Consensus 158 ~l~~~~~~Lk-pgG~l~~-~~~ 177 (259)
T 3lpm_A 158 TIRVAASLLK-QGGKANF-VHR 177 (259)
T ss_dssp HHHHHHHHEE-EEEEEEE-EEC
T ss_pred HHHHHHHHcc-CCcEEEE-EEc
Confidence 9999999999 9999999 443
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=125.40 Aligned_cols=128 Identities=14% Similarity=0.088 Sum_probs=92.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.++..+|+|+|+|+.||+.|+++... ....+.++++|+.+..
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~-----~~~~~~~~~~d~~~~~------------- 258 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA-----NGVEGEVFASNVFSEV------------- 258 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH-----TTCCCEEEECSTTTTC-------------
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----hCCCCEEEEccccccc-------------
Confidence 4579999999999999999999877899999999999999998532 1124667888875433
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc--CChhHHHHHHHHHHhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL--HKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL--~~r~dL~~yFr~V~~~L~~pGG 271 (382)
.+.||+|++.. .+.+. ....+....|+.++++|+ |||
T Consensus 259 ---------------------------------------~~~fD~Iv~~~-~~~~g~~~~~~~~~~~l~~~~~~Lk-pgG 297 (343)
T 2pjd_A 259 ---------------------------------------KGRFDMIISNP-PFHDGMQTSLDAAQTLIRGAVRHLN-SGG 297 (343)
T ss_dssp ---------------------------------------CSCEEEEEECC-CCCSSSHHHHHHHHHHHHHHGGGEE-EEE
T ss_pred ---------------------------------------cCCeeEEEECC-CcccCccCCHHHHHHHHHHHHHhCC-CCc
Confidence 45799999854 22211 135678999999999999 999
Q ss_pred EEEEeccCCCchhhhhHhhhccCCeEEEEee
Q 045407 272 IFVMDLYGGTSSEQKLRLQRRFANFTYVWEQ 302 (382)
Q Consensus 272 iFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq 302 (382)
+|++-.+...++.. ...+.+..+..+-++
T Consensus 298 ~l~i~~~~~~~~~~--~l~~~f~~~~~~~~~ 326 (343)
T 2pjd_A 298 ELRIVANAFLPYPD--VLDETFGFHEVIAQT 326 (343)
T ss_dssp EEEEEEETTSSHHH--HHHHHHSCCEEEEEC
T ss_pred EEEEEEcCCCCcHH--HHHHhcCceEEEeeC
Confidence 99996554333332 223344555544443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=117.49 Aligned_cols=103 Identities=11% Similarity=0.072 Sum_probs=80.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++..+..+|+|||+|++|++.|+++... ..++.++++|+.++...
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~----------- 137 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE------RENIIPILGDANKPQEY----------- 137 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT------CTTEEEEECCTTCGGGG-----------
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc------CCCeEEEECCCCCcccc-----------
Confidence 3579999999999999999984356899999999999999998532 15799999999875410
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .+ ...||+|+ +.+..+.....+++.+++.|+ |||+|
T Consensus 138 ----~-------------------------------~~-~~~~D~v~------~~~~~~~~~~~~l~~~~~~Lk-pgG~l 174 (230)
T 1fbn_A 138 ----A-------------------------------NI-VEKVDVIY------EDVAQPNQAEILIKNAKWFLK-KGGYG 174 (230)
T ss_dssp ----T-------------------------------TT-SCCEEEEE------ECCCSTTHHHHHHHHHHHHEE-EEEEE
T ss_pred ----c-------------------------------cc-CccEEEEE------EecCChhHHHHHHHHHHHhCC-CCcEE
Confidence 0 01 25699998 234555566788999999999 99999
Q ss_pred EEe
Q 045407 274 VMD 276 (382)
Q Consensus 274 VfD 276 (382)
++=
T Consensus 175 ~i~ 177 (230)
T 1fbn_A 175 MIA 177 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.2e-13 Score=117.45 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=80.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCC--cceEEEeccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGY--SRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~--~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.++..+++++. .+|+|||+|++||+.|+++... .+. .++.++++|+.++..
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~v~~~~~d~~~~~~----------- 118 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQT----LKCSSEQAEVINQSSLDFLK----------- 118 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHH----TTCCTTTEEEECSCHHHHTT-----------
T ss_pred CeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHH----hCCCccceEEEECCHHHHHH-----------
Confidence 3699999999999999888886 4899999999999999998532 122 379999999865430
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC-ccEEEEccchhcccCChhHHHHHHHHH--HhhccCC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA-RDIICAFNYSCCCLHKRADLVLYFKHV--LHALSKK 269 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fDiV~afn~S~~yL~~r~dL~~yFr~V--~~~L~~p 269 (382)
. +...+ ||+|++-. .+. ..+....++.+ .+.|+ |
T Consensus 119 -----~--------------------------------~~~~~~fD~I~~~~-~~~----~~~~~~~l~~~~~~~~Lk-p 155 (201)
T 2ift_A 119 -----Q--------------------------------PQNQPHFDVVFLDP-PFH----FNLAEQAISLLCENNWLK-P 155 (201)
T ss_dssp -----S--------------------------------CCSSCCEEEEEECC-CSS----SCHHHHHHHHHHHTTCEE-E
T ss_pred -----h--------------------------------hccCCCCCEEEECC-CCC----CccHHHHHHHHHhcCccC-C
Confidence 0 01356 99999753 222 34667778888 56799 9
Q ss_pred CcEEEEeccCCC
Q 045407 270 GGIFVMDLYGGT 281 (382)
Q Consensus 270 GGiFVfDl~gg~ 281 (382)
||+|++.....+
T Consensus 156 gG~l~i~~~~~~ 167 (201)
T 2ift_A 156 NALIYVETEKDK 167 (201)
T ss_dssp EEEEEEEEESSS
T ss_pred CcEEEEEECCCC
Confidence 999999876543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-12 Score=126.07 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhC--CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 99 SYLQKFFLIYVG--GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 99 ~yl~~~f~~y~g--gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
..+...+....+ ...+.+|||+|||||.++..+++++. +|+|||+|+.||+.|+++... .+..+.++++|+
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~-----~~~~v~~~~~D~ 289 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEA-----NALKAQALHSDV 289 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHH-----TTCCCEEEECST
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHH-----cCCCeEEEEcch
Confidence 444444443332 12245799999999999999999974 799999999999999998532 123589999999
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc--CChhH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL--HKRAD 254 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL--~~r~d 254 (382)
.++. . ...+||+|++. ..+.+. ...++
T Consensus 290 ~~~~-----------------~---------------------------------~~~~fD~Ii~n-pp~~~~~~~~~~~ 318 (381)
T 3dmg_A 290 DEAL-----------------T---------------------------------EEARFDIIVTN-PPFHVGGAVILDV 318 (381)
T ss_dssp TTTS-----------------C---------------------------------TTCCEEEEEEC-CCCCTTCSSCCHH
T ss_pred hhcc-----------------c---------------------------------cCCCeEEEEEC-CchhhcccccHHH
Confidence 7765 1 13579999974 233321 12578
Q ss_pred HHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccc
Q 045407 255 LVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFD 306 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD 306 (382)
...+|+.++++|+ |||+|++-.+....+... +.+.+.++..+ ++..|-
T Consensus 319 ~~~~l~~~~~~Lk-pGG~l~iv~n~~l~~~~~--l~~~f~~v~~l-~~~gF~ 366 (381)
T 3dmg_A 319 AQAFVNVAAARLR-PGGVFFLVSNPFLKYEPL--LEEKFGAFQTL-KVAEYK 366 (381)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEECTTSCHHHH--HHHHHSCCEEE-EESSSE
T ss_pred HHHHHHHHHHhcC-cCcEEEEEEcCCCChHHH--HHHhhccEEEE-eCCCEE
Confidence 8899999999999 999999987655444432 34456666666 544443
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.7e-13 Score=121.73 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=79.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc--cccCCCCcceEEEeccCCCc-hhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN--KVGADGYSRISLFHGNVLQP-LEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~--kl~~d~~~RI~l~~gDV~~~-~~~~~~~~~~~ 190 (382)
..+|||+|||+|.++..+|+..+...|+|||+|+.||+.|+++... +....+..+|.++++|+.+. +.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~--------- 117 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPN--------- 117 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHH---------
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhh---------
Confidence 3468999999999999999998878899999999999999886421 11112335799999998762 20
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH-----HHHHHHHHHhh
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD-----LVLYFKHVLHA 265 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d-----L~~yFr~V~~~ 265 (382)
. |....+|.|++.+ +--|+..+.. ...+|+.+++.
T Consensus 118 -------~--------------------------------~~~~~~D~v~~~~-~dp~~k~~h~krr~~~~~~l~~~~~~ 157 (235)
T 3ckk_A 118 -------F--------------------------------FYKGQLTKMFFLF-PDPHFKRTKHKWRIISPTLLAEYAYV 157 (235)
T ss_dssp -------H--------------------------------CCTTCEEEEEEES-CC-----------CCCHHHHHHHHHH
T ss_pred -------h--------------------------------CCCcCeeEEEEeC-CCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 0 2245789987543 3223322221 14689999999
Q ss_pred ccCCCcEEEEec
Q 045407 266 LSKKGGIFVMDL 277 (382)
Q Consensus 266 L~~pGGiFVfDl 277 (382)
|+ |||+|+|-.
T Consensus 158 Lk-pGG~l~~~t 168 (235)
T 3ckk_A 158 LR-VGGLVYTIT 168 (235)
T ss_dssp EE-EEEEEEEEE
T ss_pred CC-CCCEEEEEe
Confidence 99 999999854
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=119.02 Aligned_cols=105 Identities=22% Similarity=0.185 Sum_probs=81.1
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||..+..+++.-+ ..+|+|||+|++|++.|+++... .+- ..+|.++++|+.+...
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~g~--~~~v~~~~~d~~~~l~----------- 129 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL-AGV--DQRVTLREGPALQSLE----------- 129 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH-TTC--TTTEEEEESCHHHHHH-----------
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEEcCHHHHHH-----------
Confidence 45799999999999999999844 46899999999999999998532 111 2379999999865330
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. + ....+||+|++-.. ......+|+.+++.|+ |||+
T Consensus 130 --~--~--------------------------------~~~~~fD~V~~d~~-------~~~~~~~l~~~~~~Lk-pGG~ 165 (248)
T 3tfw_A 130 --S--L--------------------------------GECPAFDLIFIDAD-------KPNNPHYLRWALRYSR-PGTL 165 (248)
T ss_dssp --T--C--------------------------------CSCCCCSEEEECSC-------GGGHHHHHHHHHHTCC-TTCE
T ss_pred --h--c--------------------------------CCCCCeEEEEECCc-------hHHHHHHHHHHHHhcC-CCeE
Confidence 0 0 00247999998542 3566789999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
+|+|
T Consensus 166 lv~~ 169 (248)
T 3tfw_A 166 IIGD 169 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=130.66 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=100.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE-eccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF-HGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~-~gDV~~~~~~~~~~~~~~~~ 192 (382)
..++||+|||||.++..|++.|. .+|+|||+|+.||+|+.+++ .|+..+ ..|++.+..
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga-~~V~aVDvs~~mL~~a~r~~---------~rv~~~~~~ni~~l~~----------- 144 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGA-KLVYAVDVGTNQLVWKLRQD---------DRVRSMEQYNFRYAEP----------- 144 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSSSCSCHHHHTC---------TTEEEECSCCGGGCCG-----------
T ss_pred ccEEEecCCCccHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC---------cccceecccCceecch-----------
Confidence 35799999999999999999975 48999999999999977653 244333 346544330
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+++.+.||+|+|- .||. .+...|+.+++.|+ |||.
T Consensus 145 ------------------------------------~~l~~~~fD~v~~d-~sf~------sl~~vL~e~~rvLk-pGG~ 180 (291)
T 3hp7_A 145 ------------------------------------VDFTEGLPSFASID-VSFI------SLNLILPALAKILV-DGGQ 180 (291)
T ss_dssp ------------------------------------GGCTTCCCSEEEEC-CSSS------CGGGTHHHHHHHSC-TTCE
T ss_pred ------------------------------------hhCCCCCCCEEEEE-eeHh------hHHHHHHHHHHHcC-cCCE
Confidence 01223459999873 3443 24778999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
||+=+.+ .++. .+ + ..+ ++. .++. ...+.+++.++.++|+++||
T Consensus 181 lv~lvkP--qfe~----~~---------~--~~~---------------~~G-~vrd---~~~~~~~~~~v~~~~~~~Gf 224 (291)
T 3hp7_A 181 VVALVKP--QFEA----GR---------E--QIG---------------KNG-IVRE---SSIHEKVLETVTAFAVDYGF 224 (291)
T ss_dssp EEEEECG--GGTS----CG---------G--GCC----------------CC-CCCC---HHHHHHHHHHHHHHHHHTTE
T ss_pred EEEEECc--cccc----Ch---------h--hcC---------------CCC-ccCC---HHHHHHHHHHHHHHHHHCCC
Confidence 9983321 1110 00 0 000 000 1110 11256789999999999999
Q ss_pred cEEEEEeccCchhhhhccccCc
Q 045407 353 RSVHFWLREMPDAREMRNTEGL 374 (382)
Q Consensus 353 ~~V~v~~r~~~~~~~~~~~~~~ 374 (382)
....+..... .--.+|.|-+
T Consensus 225 ~v~~~~~spi--~g~~gn~e~l 244 (291)
T 3hp7_A 225 SVKGLDFSPI--QGGHGNIEFL 244 (291)
T ss_dssp EEEEEEECSS--CCGGGCCCEE
T ss_pred EEEEEEECCC--CCCCcCHHHH
Confidence 9888654333 2234555533
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-13 Score=116.25 Aligned_cols=100 Identities=14% Similarity=-0.033 Sum_probs=80.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++..+..+|+|+|+|+.|++.|+++... .+..++.++++|+.++.
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~-------------- 128 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE----LKLENIEPVQSRVEEFP-------------- 128 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH----TTCSSEEEEECCTTTSC--------------
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCeEEEecchhhCC--------------
Confidence 479999999999999999986667899999999999999987532 12234999999987654
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
..++||+|++.. + .++..+++.+++.|+ |||+|+
T Consensus 129 -------------------------------------~~~~~D~i~~~~-----~---~~~~~~l~~~~~~L~-~gG~l~ 162 (207)
T 1jsx_A 129 -------------------------------------SEPPFDGVISRA-----F---ASLNDMVSWCHHLPG-EQGRFY 162 (207)
T ss_dssp -------------------------------------CCSCEEEEECSC-----S---SSHHHHHHHHTTSEE-EEEEEE
T ss_pred -------------------------------------ccCCcCEEEEec-----c---CCHHHHHHHHHHhcC-CCcEEE
Confidence 135699999743 2 346789999999999 999999
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+-..
T Consensus 163 ~~~~ 166 (207)
T 1jsx_A 163 ALKG 166 (207)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-13 Score=114.01 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=78.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++. .++.++++| .+
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~v~~~~~d---~~------------- 70 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKF---------DSVITLSDP---KE------------- 70 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHC---------TTSEEESSG---GG-------------
T ss_pred CCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhC---------CCcEEEeCC---CC-------------
Confidence 45799999999999999999984 8999999999999999982 378899998 22
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....||+|++.+ ++.++. +...+++.+++.|+ |||+|
T Consensus 71 -------------------------------------~~~~~~D~v~~~~-~l~~~~---~~~~~l~~~~~~L~-pgG~l 108 (170)
T 3i9f_A 71 -------------------------------------IPDNSVDFILFAN-SFHDMD---DKQHVISEVKRILK-DDGRV 108 (170)
T ss_dssp -------------------------------------SCTTCEEEEEEES-CSTTCS---CHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------CCCCceEEEEEcc-chhccc---CHHHHHHHHHHhcC-CCCEE
Confidence 1246799999875 556654 56789999999999 99999
Q ss_pred EEe
Q 045407 274 VMD 276 (382)
Q Consensus 274 VfD 276 (382)
++-
T Consensus 109 ~~~ 111 (170)
T 3i9f_A 109 III 111 (170)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=115.86 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.++..+.... .+.+|||+|||||.++..|++.-+ ..+|+|+|+|++|++.|+++... .+- ..+|.++++|+.
T Consensus 54 ~~l~~l~~~~----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~v~~~~~d~~ 126 (225)
T 3tr6_A 54 QLLALLVKLM----QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK-AGL--SDKIGLRLSPAK 126 (225)
T ss_dssp HHHHHHHHHH----TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH-TTC--TTTEEEEESCHH
T ss_pred HHHHHHHHhh----CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCC--CCceEEEeCCHH
Confidence 4555444432 245799999999999999998733 46899999999999999998532 111 236999999986
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+.... +. ......+||+|++-. .......
T Consensus 127 ~~~~~---------------~~-----------------------------~~~~~~~fD~v~~~~-------~~~~~~~ 155 (225)
T 3tr6_A 127 DTLAE---------------LI-----------------------------HAGQAWQYDLIYIDA-------DKANTDL 155 (225)
T ss_dssp HHHHH---------------HH-----------------------------TTTCTTCEEEEEECS-------CGGGHHH
T ss_pred HHHHH---------------hh-----------------------------hccCCCCccEEEECC-------CHHHHHH
Confidence 54300 00 000126799998533 2456788
Q ss_pred HHHHHHhhccCCCcEEEEe
Q 045407 258 YFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfD 276 (382)
+|+.+++.|+ |||+||+|
T Consensus 156 ~l~~~~~~L~-pgG~lv~~ 173 (225)
T 3tr6_A 156 YYEESLKLLR-EGGLIAVD 173 (225)
T ss_dssp HHHHHHHHEE-EEEEEEEE
T ss_pred HHHHHHHhcC-CCcEEEEe
Confidence 9999999999 99999996
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=124.30 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=84.9
Q ss_pred CCCcccccCCCc--cHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 113 QPLHLQEDFCGT--ALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 113 ~p~~LLEl~CGT--G~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
....|||+|||+ +.++.++++ ..+..+|+|||+|+.||++|+++... .+..++.|+++|++++...
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~----~~~~~~~~v~aD~~~~~~~------- 146 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS----TPEGRTAYVEADMLDPASI------- 146 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC----CSSSEEEEEECCTTCHHHH-------
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc----CCCCcEEEEEecccChhhh-------
Confidence 346899999997 434455544 45678999999999999999988532 2234799999999997510
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
...-.+ ...|......+|+ +|.++-||.+.++...+++.++++|+ |
T Consensus 147 ---l~~~~~-----------------------------~~~~D~~~p~av~-~~avLH~l~d~~~p~~~l~~l~~~L~-P 192 (277)
T 3giw_A 147 ---LDAPEL-----------------------------RDTLDLTRPVALT-VIAIVHFVLDEDDAVGIVRRLLEPLP-S 192 (277)
T ss_dssp ---HTCHHH-----------------------------HTTCCTTSCCEEE-EESCGGGSCGGGCHHHHHHHHHTTSC-T
T ss_pred ---hccccc-----------------------------ccccCcCCcchHH-hhhhHhcCCchhhHHHHHHHHHHhCC-C
Confidence 000000 0001122233444 57788899887778999999999999 9
Q ss_pred CcEEEEeccC
Q 045407 270 GGIFVMDLYG 279 (382)
Q Consensus 270 GGiFVfDl~g 279 (382)
||+|++....
T Consensus 193 GG~Lvls~~~ 202 (277)
T 3giw_A 193 GSYLAMSIGT 202 (277)
T ss_dssp TCEEEEEEEC
T ss_pred CcEEEEEecc
Confidence 9999996543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=118.83 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.++..+... .+.+...+|||+|||||..+..|++.- +..+|+|||+|++|++.|+++... .+- ...+|.++++|..
T Consensus 43 ~~l~~l~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~-~~~~i~~~~gda~ 119 (221)
T 3dr5_A 43 QLLTTLAAT-TNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE-AGY-SPSRVRFLLSRPL 119 (221)
T ss_dssp HHHHHHHHH-SCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHH-TTC-CGGGEEEECSCHH
T ss_pred HHHHHHHHh-hCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC-CcCcEEEEEcCHH
Confidence 445444443 232212378999999999999999863 356899999999999999998532 111 1148999999986
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+... .+..++||+|++-.. ......
T Consensus 120 ~~l~------------------------------------------------~~~~~~fD~V~~d~~-------~~~~~~ 144 (221)
T 3dr5_A 120 DVMS------------------------------------------------RLANDSYQLVFGQVS-------PMDLKA 144 (221)
T ss_dssp HHGG------------------------------------------------GSCTTCEEEEEECCC-------TTTHHH
T ss_pred HHHH------------------------------------------------HhcCCCcCeEEEcCc-------HHHHHH
Confidence 5431 011357999987532 245577
Q ss_pred HHHHHHhhccCCCcEEEEe
Q 045407 258 YFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfD 276 (382)
+|+.+++.|+ |||++|+|
T Consensus 145 ~l~~~~~~Lk-pGG~lv~d 162 (221)
T 3dr5_A 145 LVDAAWPLLR-RGGALVLA 162 (221)
T ss_dssp HHHHHHHHEE-EEEEEEET
T ss_pred HHHHHHHHcC-CCcEEEEe
Confidence 9999999999 99999996
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=113.98 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=79.6
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..+++.+ .+|+|+|+|++|++.|+++... .+..++.++++|+.+..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~--~~v~~vD~~~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~----------- 138 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV--QHVCSVERIKGLQWQARRRLKN----LDLHNVSTRHGDGWQGW----------- 138 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHHH----TTCCSEEEEESCGGGCC-----------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHH----cCCCceEEEECCcccCC-----------
Confidence 335689999999999999999996 4799999999999999998532 23347999999986644
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
. ...+||+|++.. ++.++.+ .+++.|+ |||
T Consensus 139 ------~---------------------------------~~~~~D~i~~~~-~~~~~~~---------~~~~~L~-pgG 168 (210)
T 3lbf_A 139 ------Q---------------------------------ARAPFDAIIVTA-APPEIPT---------ALMTQLD-EGG 168 (210)
T ss_dssp ------G---------------------------------GGCCEEEEEESS-BCSSCCT---------HHHHTEE-EEE
T ss_pred ------c---------------------------------cCCCccEEEEcc-chhhhhH---------HHHHhcc-cCc
Confidence 1 135799999875 4555553 5788999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
++|+-+.+
T Consensus 169 ~lv~~~~~ 176 (210)
T 3lbf_A 169 ILVLPVGE 176 (210)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcC
Confidence 99998765
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=116.87 Aligned_cols=108 Identities=17% Similarity=0.036 Sum_probs=80.5
Q ss_pred CCcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+||| ||.++..+++.. ..+|+|+|+|+.||+.|+++... .+ .++.++++|+..+..
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~-~~v~~~~~d~~~~~~----------- 118 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIER----NN-SNVRLVKSNGGIIKG----------- 118 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHH----TT-CCCEEEECSSCSSTT-----------
T ss_pred CCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHH----hC-CCcEEEeCCchhhhh-----------
Confidence 4579999999 999999999994 35899999999999999998532 12 279999999754431
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc----------------CChhHHH
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL----------------HKRADLV 256 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL----------------~~r~dL~ 256 (382)
+..+.||+|++-. .+... +..+.+.
T Consensus 119 --------------------------------------~~~~~fD~I~~np-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
T 3evz_A 119 --------------------------------------VVEGTFDVIFSAP-PYYDKPLGRVLTEREAIGGGKYGEEFSV 159 (230)
T ss_dssp --------------------------------------TCCSCEEEEEECC-CCC---------------CCSSSCHHHH
T ss_pred --------------------------------------cccCceeEEEECC-CCcCCccccccChhhhhccCccchHHHH
Confidence 1136799999642 22211 1223358
Q ss_pred HHHHHHHhhccCCCcEEEEecc
Q 045407 257 LYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
..++.+++.|+ |||+|++=+.
T Consensus 160 ~~l~~~~~~Lk-pgG~l~~~~~ 180 (230)
T 3evz_A 160 KLLEEAFDHLN-PGGKVALYLP 180 (230)
T ss_dssp HHHHHHGGGEE-EEEEEEEEEE
T ss_pred HHHHHHHHHhC-CCeEEEEEec
Confidence 89999999999 9999999543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=125.47 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=93.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++.++..+|+|||+|+.|++.|+++... .+-....++.++++|+.++.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~-ngl~~~~~v~~~~~D~~~~~------------- 288 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALSGV------------- 288 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HCGGGGGGEEEEECSTTTTC-------------
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHH-cCCCcCceEEEEechhhccC-------------
Confidence 4689999999999999999998778999999999999999998543 11111236889999987643
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc--CChhHHHHHHHHHHhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL--HKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL--~~r~dL~~yFr~V~~~L~~pGG 271 (382)
....||+|++-. .|... ........+|+.++++|+ |||
T Consensus 289 --------------------------------------~~~~fD~Ii~np-pfh~~~~~~~~~~~~~l~~~~~~Lk-pgG 328 (375)
T 4dcm_A 289 --------------------------------------EPFRFNAVLCNP-PFHQQHALTDNVAWEMFHHARRCLK-ING 328 (375)
T ss_dssp --------------------------------------CTTCEEEEEECC-CC-------CCHHHHHHHHHHHHEE-EEE
T ss_pred --------------------------------------CCCCeeEEEECC-CcccCcccCHHHHHHHHHHHHHhCC-CCc
Confidence 145799999842 22211 123445578999999999 999
Q ss_pred EEEEeccCCCchhhhhHhhhccCCeEEEEee
Q 045407 272 IFVMDLYGGTSSEQKLRLQRRFANFTYVWEQ 302 (382)
Q Consensus 272 iFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq 302 (382)
+|++=.+....+.. .+.+.+.++..+-++
T Consensus 329 ~l~iv~n~~~~~~~--~l~~~fg~~~~~a~~ 357 (375)
T 4dcm_A 329 ELYIVANRHLDYFH--KLKKIFGNCTTIATN 357 (375)
T ss_dssp EEEEEEETTSCHHH--HHHHHHSCCEEEEEC
T ss_pred EEEEEEECCcCHHH--HHHHhcCCEEEEeeC
Confidence 99995544333433 234456666655554
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=119.24 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=82.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC-CcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG-YSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~-~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||.++..++++.+..+|+|||+|++|++.|+++... +...+ ..++.++++|+.++.....
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~-~~~~~l~~~v~~~~~D~~~~~~~~~-------- 107 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLEL-PDNAAFSARIEVLEADVTLRAKARV-------- 107 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTS-GGGTTTGGGEEEEECCTTCCHHHHH--------
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHh-hhhCCCcceEEEEeCCHHHHhhhhh--------
Confidence 4579999999999999999998767899999999999999998521 00011 1379999999988731000
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc--ch------------hcccCChhHHHHH
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN--YS------------CCCLHKRADLVLY 258 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn--~S------------~~yL~~r~dL~~y 258 (382)
...+....||+|++-- +. +........+...
T Consensus 108 -----------------------------------~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~ 152 (260)
T 2ozv_A 108 -----------------------------------EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDW 152 (260)
T ss_dssp -----------------------------------HTTCCTTCEEEEEECCCC---------------------CCHHHH
T ss_pred -----------------------------------hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHH
Confidence 0002245799999841 10 1111122347889
Q ss_pred HHHHHhhccCCCcEEEEec
Q 045407 259 FKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl 277 (382)
++.+++.|+ |||+|+|-+
T Consensus 153 l~~~~~~Lk-pgG~l~~~~ 170 (260)
T 2ozv_A 153 IRTASAIMV-SGGQLSLIS 170 (260)
T ss_dssp HHHHHHHEE-EEEEEEEEE
T ss_pred HHHHHHHcC-CCCEEEEEE
Confidence 999999999 999999943
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-13 Score=130.53 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=101.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..++++.+..+++|+|+ +.|++.|++. .+|.++++|+.+ +
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~-~------------- 248 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN----------ENLNFVGGDMFK-S------------- 248 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC----------SSEEEEECCTTT-C-------------
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC----------CCcEEEeCccCC-C-------------
Confidence 35799999999999999999998889999999 7899655431 359999999876 3
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC---C
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK---G 270 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p---G 270 (382)
.+.||+|++.+ ++.++ ..++....+++++++|+ | |
T Consensus 249 ---------------------------------------~~~~D~v~~~~-vlh~~-~d~~~~~~l~~~~~~L~-p~~~g 286 (358)
T 1zg3_A 249 ---------------------------------------IPSADAVLLKW-VLHDW-NDEQSLKILKNSKEAIS-HKGKD 286 (358)
T ss_dssp ---------------------------------------CCCCSEEEEES-CGGGS-CHHHHHHHHHHHHHHTG-GGGGG
T ss_pred ---------------------------------------CCCceEEEEcc-cccCC-CHHHHHHHHHHHHHhCC-CCCCC
Confidence 23599999876 44443 34567799999999999 8 9
Q ss_pred cEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHH
Q 045407 271 GIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEE 349 (382)
Q Consensus 271 GiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Lee 349 (382)
|.+|+ |...+..... +. +.|....+|.. +.. ....+.++..|++.+|++
T Consensus 287 G~l~i~e~~~~~~~~~--------~~--~~~~~~~~d~~---------~~~-----------~~~g~~~t~~e~~~ll~~ 336 (358)
T 1zg3_A 287 GKVIIIDISIDETSDD--------RG--LTELQLDYDLV---------MLT-----------MFLGKERTKQEWEKLIYD 336 (358)
T ss_dssp CEEEEEECEECTTCSC--------HH--HHHHHHHHHHH---------HHH-----------HHSCCCEEHHHHHHHHHH
T ss_pred cEEEEEEeccCCCCcc--------ch--hhhHHHhhCHH---------Hhc-----------cCCCCCCCHHHHHHHHHH
Confidence 97666 7652211100 00 00000011110 000 001246799999999999
Q ss_pred cCCcEEEEEe
Q 045407 350 AGFRSVHFWL 359 (382)
Q Consensus 350 AGF~~V~v~~ 359 (382)
|||+.++++-
T Consensus 337 aGf~~~~~~~ 346 (358)
T 1zg3_A 337 AGFSSYKITP 346 (358)
T ss_dssp TTCCEEEEEE
T ss_pred cCCCeeEEEe
Confidence 9999999873
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=109.73 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=81.0
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++... .+. ..++.++++|+.++.
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~-~~~--~~~~~~~~~d~~~~~----------- 95 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQR-HGL--GDNVTLMEGDAPEAL----------- 95 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH-TTC--CTTEEEEESCHHHHH-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHH-cCC--CcceEEEecCHHHhc-----------
Confidence 335689999999999999999998 5899999999999999987532 111 147899999976522
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
. ..+.||+|++... + ..+...++.+++.|+ |||
T Consensus 96 ------~---------------------------------~~~~~D~v~~~~~----~---~~~~~~l~~~~~~l~-~gG 128 (192)
T 1l3i_A 96 ------C---------------------------------KIPDIDIAVVGGS----G---GELQEILRIIKDKLK-PGG 128 (192)
T ss_dssp ------T---------------------------------TSCCEEEEEESCC----T---TCHHHHHHHHHHTEE-EEE
T ss_pred ------c---------------------------------cCCCCCEEEECCc----h---HHHHHHHHHHHHhcC-CCc
Confidence 0 0247999997642 1 246889999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
++++....
T Consensus 129 ~l~~~~~~ 136 (192)
T 1l3i_A 129 RIIVTAIL 136 (192)
T ss_dssp EEEEEECB
T ss_pred EEEEEecC
Confidence 99997653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-12 Score=117.23 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=76.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.|. +|+|+|+|+.|++.|+++... .+. .+.++++|+.++.
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~----~~~-~v~~~~~d~~~~~------------- 180 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKR----NGV-RPRFLEGSLEAAL------------- 180 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHH----TTC-CCEEEESCHHHHG-------------
T ss_pred CCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHH----cCC-cEEEEECChhhcC-------------
Confidence 45799999999999999999986 799999999999999998532 121 2888998875421
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+||+|++.. . ...+...++.+++.|+ |||+|
T Consensus 181 --------------------------------------~~~~fD~Vv~n~-~------~~~~~~~l~~~~~~Lk-pgG~l 214 (254)
T 2nxc_A 181 --------------------------------------PFGPFDLLVANL-Y------AELHAALAPRYREALV-PGGRA 214 (254)
T ss_dssp --------------------------------------GGCCEEEEEEEC-C------HHHHHHHHHHHHHHEE-EEEEE
T ss_pred --------------------------------------cCCCCCEEEECC-c------HHHHHHHHHHHHHHcC-CCCEE
Confidence 135699999742 1 2457889999999999 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 215 il 216 (254)
T 2nxc_A 215 LL 216 (254)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=111.14 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.+. .+|+|+|+|++|++.|+++... .+ -..++.++++|+.++..
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~-~~--~~~~~~~~~~d~~~~~~------------ 95 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIM-TK--AENRFTLLKMEAERAID------------ 95 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHT-TT--CGGGEEEECSCHHHHHH------------
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHH-cC--CCCceEEEECcHHHhHH------------
Confidence 46799999999999999999864 5899999999999999998532 11 11379999999866420
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHH--hhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVL--HALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~--~~L~~pGG 271 (382)
. ....||+|++.. .+. .......++.+. +.|+ |||
T Consensus 96 ----~---------------------------------~~~~fD~i~~~~-~~~----~~~~~~~~~~l~~~~~L~-~gG 132 (177)
T 2esr_A 96 ----C---------------------------------LTGRFDLVFLDP-PYA----KETIVATIEALAAKNLLS-EQV 132 (177)
T ss_dssp ----H---------------------------------BCSCEEEEEECC-SSH----HHHHHHHHHHHHHTTCEE-EEE
T ss_pred ----h---------------------------------hcCCCCEEEECC-CCC----cchHHHHHHHHHhCCCcC-CCc
Confidence 0 034599999753 221 134455566665 8999 999
Q ss_pred EEEEeccCC
Q 045407 272 IFVMDLYGG 280 (382)
Q Consensus 272 iFVfDl~gg 280 (382)
+|++.....
T Consensus 133 ~l~~~~~~~ 141 (177)
T 2esr_A 133 MVVCETDKT 141 (177)
T ss_dssp EEEEEEETT
T ss_pred EEEEEECCc
Confidence 999987653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=109.72 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=78.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.++. |+|+|+|++|++.|+++... .+ .++.++++|+.++...
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~----~~-~~~~~~~~d~~~~~~~----------- 103 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRR----TG-LGARVVALPVEVFLPE----------- 103 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHH----HT-CCCEEECSCHHHHHHH-----------
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHH----cC-CceEEEeccHHHHHHh-----------
Confidence 347999999999999999999874 99999999999999998532 11 1789999998764200
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+. . ...+||+|++.. .+. ....++...+.+ ++.|+ |||+|
T Consensus 104 ----~~----------------~---------------~~~~~D~i~~~~-~~~--~~~~~~~~~~~~-~~~L~-~gG~~ 143 (171)
T 1ws6_A 104 ----AK----------------A---------------QGERFTVAFMAP-PYA--MDLAALFGELLA-SGLVE-AGGLY 143 (171)
T ss_dssp ----HH----------------H---------------TTCCEEEEEECC-CTT--SCTTHHHHHHHH-HTCEE-EEEEE
T ss_pred ----hh----------------c---------------cCCceEEEEECC-CCc--hhHHHHHHHHHh-hcccC-CCcEE
Confidence 00 0 023699999854 222 333444444444 59999 99999
Q ss_pred EEeccCC
Q 045407 274 VMDLYGG 280 (382)
Q Consensus 274 VfDl~gg 280 (382)
++.....
T Consensus 144 ~~~~~~~ 150 (171)
T 1ws6_A 144 VLQHPKD 150 (171)
T ss_dssp EEEEETT
T ss_pred EEEeCCc
Confidence 9977643
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=122.22 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=51.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..+++. +..+|+|+|+|++||++|+++... .+- ..++.++++|+.++.
T Consensus 125 ~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~-~~l--~~~v~~~~~D~~~~~ 186 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAER-HGV--SDRFFVRKGEFLEPF 186 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHH-TTC--TTSEEEEESSTTGGG
T ss_pred CEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-cCC--CCceEEEECcchhhc
Confidence 47999999999999999999 667899999999999999998533 111 136999999987643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=115.99 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=80.2
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..+++. |+..+|+|||+|+.|++.+.+++... .++.++++|+.++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~------------ 140 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHK------------ 140 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGG------------
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhh------------
Confidence 47999999999999999998 45568999999999888877765321 479999999987541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+. +....||+|++... .......+++++++.|+ |||+|
T Consensus 141 ----~~-------------------------------~~~~~~D~V~~~~~------~~~~~~~~~~~~~~~Lk-pgG~l 178 (233)
T 2ipx_A 141 ----YR-------------------------------MLIAMVDVIFADVA------QPDQTRIVALNAHTFLR-NGGHF 178 (233)
T ss_dssp ----GG-------------------------------GGCCCEEEEEECCC------CTTHHHHHHHHHHHHEE-EEEEE
T ss_pred ----hc-------------------------------ccCCcEEEEEEcCC------CccHHHHHHHHHHHHcC-CCeEE
Confidence 00 01357999998332 34455677889999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++.+.
T Consensus 179 ~i~~~ 183 (233)
T 2ipx_A 179 VISIK 183 (233)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99765
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=127.19 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=86.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+||++|||+|.++.++++..+..+|++||||++|+++|+++... ....|+.++++|.+++..
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~----~~~~rv~v~~~Da~~~l~------------ 153 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI----PRAPRVKIRVDDARMVAE------------ 153 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC----CCTTTEEEEESCHHHHHH------------
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc----cCCCceEEEECcHHHHHh------------
Confidence 4589999999999999999976667899999999999999998532 123589999999876531
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~pGG 271 (382)
.+...+||+|++-.+.-.+.. ..| ..+|+.++++|+ |||
T Consensus 154 ------------------------------------~~~~~~fDvIi~D~~~~~~~~--~~L~t~efl~~~~r~Lk-pgG 194 (317)
T 3gjy_A 154 ------------------------------------SFTPASRDVIIRDVFAGAITP--QNFTTVEFFEHCHRGLA-PGG 194 (317)
T ss_dssp ------------------------------------TCCTTCEEEEEECCSTTSCCC--GGGSBHHHHHHHHHHEE-EEE
T ss_pred ------------------------------------hccCCCCCEEEECCCCccccc--hhhhHHHHHHHHHHhcC-CCc
Confidence 011357999998544433322 233 689999999999 999
Q ss_pred EEEEeccCC
Q 045407 272 IFVMDLYGG 280 (382)
Q Consensus 272 iFVfDl~gg 280 (382)
+||+.+...
T Consensus 195 vlv~~~~~~ 203 (317)
T 3gjy_A 195 LYVANCGDH 203 (317)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEecCC
Confidence 999988643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=114.49 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=78.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++++. .+|+|||+|+.||+.|+++... .+..++.++++|+.++..
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~----~~~~~v~~~~~D~~~~~~------------- 117 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLAT----LKAGNARVVNSNAMSFLA------------- 117 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHH----TTCCSEEEECSCHHHHHS-------------
T ss_pred CeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHH----cCCCcEEEEECCHHHHHh-------------
Confidence 3699999999999999888886 3899999999999999988532 122479999999865330
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHh--hccCCCcE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLH--ALSKKGGI 272 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~--~L~~pGGi 272 (382)
.....||+|++-. .|. .......++.+.+ .|+ |||+
T Consensus 118 ------------------------------------~~~~~fD~V~~~~-p~~----~~~~~~~l~~l~~~~~L~-pgG~ 155 (202)
T 2fpo_A 118 ------------------------------------QKGTPHNIVFVDP-PFR----RGLLEETINLLEDNGWLA-DEAL 155 (202)
T ss_dssp ------------------------------------SCCCCEEEEEECC-SSS----TTTHHHHHHHHHHTTCEE-EEEE
T ss_pred ------------------------------------hcCCCCCEEEECC-CCC----CCcHHHHHHHHHhcCccC-CCcE
Confidence 0135799998743 222 2345566677765 498 9999
Q ss_pred EEEeccC
Q 045407 273 FVMDLYG 279 (382)
Q Consensus 273 FVfDl~g 279 (382)
|++....
T Consensus 156 l~i~~~~ 162 (202)
T 2fpo_A 156 IYVESEV 162 (202)
T ss_dssp EEEEEEG
T ss_pred EEEEECC
Confidence 9998764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=115.65 Aligned_cols=134 Identities=17% Similarity=0.132 Sum_probs=90.8
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
.+....++..+.... . +.+|||+|||+|.++..|++..+ ..+|+|+|+|+++++.|+++... .+. ..+|.++
T Consensus 45 ~~~~~~~l~~l~~~~-~---~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~--~~~v~~~ 117 (239)
T 2hnk_A 45 SPEEGQFLNILTKIS-G---AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE-NGL--ENKIFLK 117 (239)
T ss_dssp CHHHHHHHHHHHHHH-T---CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-TTC--GGGEEEE
T ss_pred CHHHHHHHHHHHHhh-C---cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCCEEEE
Confidence 344456666655432 2 45799999999999999999854 46899999999999999998532 111 1369999
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCC--CCccEEEEccchhcccC
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSL--PARDIICAFNYSCCCLH 250 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~fDiV~afn~S~~yL~ 250 (382)
++|+.+... .. .. +.....-...|.. .+||+|++..
T Consensus 118 ~~d~~~~~~-~~------------~~----------------------~~~~~~~~~~f~~~~~~fD~I~~~~------- 155 (239)
T 2hnk_A 118 LGSALETLQ-VL------------ID----------------------SKSAPSWASDFAFGPSSIDLFFLDA------- 155 (239)
T ss_dssp ESCHHHHHH-HH------------HH----------------------CSSCCGGGTTTCCSTTCEEEEEECS-------
T ss_pred ECCHHHHHH-HH------------Hh----------------------hcccccccccccCCCCCcCEEEEeC-------
Confidence 999765320 00 00 0000000112444 6799998763
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
....+..+|+.+++.|+ |||++|++.
T Consensus 156 ~~~~~~~~l~~~~~~L~-pgG~lv~~~ 181 (239)
T 2hnk_A 156 DKENYPNYYPLILKLLK-PGGLLIADN 181 (239)
T ss_dssp CGGGHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcC-CCeEEEEEc
Confidence 23566789999999999 999999974
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-12 Score=106.53 Aligned_cols=99 Identities=11% Similarity=0.004 Sum_probs=76.7
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++... .+..++.++++|+.++.
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~----~~~~~~~~~~~d~~~~~------------ 96 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRC--KFVYAIDYLDGAIEVTKQNLAK----FNIKNCQIIKGRAEDVL------------ 96 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTS--SEEEEEECSHHHHHHHHHHHHH----TTCCSEEEEESCHHHHG------------
T ss_pred CCCEEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHH----cCCCcEEEEECCccccc------------
Confidence 34579999999999999999943 5899999999999999998532 12247999999986522
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
..+.||+|++..- .++...++.+++. |||+
T Consensus 97 ---------------------------------------~~~~~D~i~~~~~--------~~~~~~l~~~~~~---~gG~ 126 (183)
T 2yxd_A 97 ---------------------------------------DKLEFNKAFIGGT--------KNIEKIIEILDKK---KINH 126 (183)
T ss_dssp ---------------------------------------GGCCCSEEEECSC--------SCHHHHHHHHHHT---TCCE
T ss_pred ---------------------------------------cCCCCcEEEECCc--------ccHHHHHHHHhhC---CCCE
Confidence 1256999998764 4556777777777 6999
Q ss_pred EEEeccC
Q 045407 273 FVMDLYG 279 (382)
Q Consensus 273 FVfDl~g 279 (382)
|++...+
T Consensus 127 l~~~~~~ 133 (183)
T 2yxd_A 127 IVANTIV 133 (183)
T ss_dssp EEEEESC
T ss_pred EEEEecc
Confidence 9997654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-13 Score=124.77 Aligned_cols=108 Identities=9% Similarity=0.051 Sum_probs=79.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+|||+|||||.++..|+...+..+++|+|+|+.||+.|+++... ++.. .++.+ +|.....
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~-~g~~--~~v~~--~d~~~~~------------- 111 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK-LKTT--IKYRF--LNKESDV------------- 111 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH-SCCS--SEEEE--ECCHHHH-------------
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-cCCC--ccEEE--ecccccC-------------
Confidence 7789999999999999999998889999999999999999998532 2221 14544 4542221
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
..++||+|++++.-. || .+....+..+++.|+ |||+|
T Consensus 112 --------------------------------------~~~~~DvVLa~k~LH-lL---~~~~~al~~v~~~L~-pggvf 148 (200)
T 3fzg_A 112 --------------------------------------YKGTYDVVFLLKMLP-VL---KQQDVNILDFLQLFH-TQNFV 148 (200)
T ss_dssp --------------------------------------TTSEEEEEEEETCHH-HH---HHTTCCHHHHHHTCE-EEEEE
T ss_pred --------------------------------------CCCCcChhhHhhHHH-hh---hhhHHHHHHHHHHhC-CCCEE
Confidence 146699999998544 44 344555558999999 99999
Q ss_pred EE-e--ccCCCc
Q 045407 274 VM-D--LYGGTS 282 (382)
Q Consensus 274 Vf-D--l~gg~s 282 (382)
|- + -.+|.+
T Consensus 149 ISfptksl~Gr~ 160 (200)
T 3fzg_A 149 ISFPIKSLSGKE 160 (200)
T ss_dssp EEEECCCCC--C
T ss_pred EEeChHHhcCCC
Confidence 97 7 444443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-12 Score=123.53 Aligned_cols=126 Identities=14% Similarity=0.064 Sum_probs=89.2
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL 171 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l 171 (382)
++..-...|...++.. .....+.+|||+|||||.++..+++.|. .+|+|||+|+ |++.|+++... .+ -..+|.+
T Consensus 30 ~d~~r~~~y~~~i~~~-l~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~-~~--l~~~v~~ 103 (348)
T 2y1w_A 30 QDYVRTGTYQRAILQN-HTDFKDKIVLDVGCGSGILSFFAAQAGA-RKIYAVEAST-MAQHAEVLVKS-NN--LTDRIVV 103 (348)
T ss_dssp TCHHHHHHHHHHHHHT-GGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-HHHHHHHHHHH-TT--CTTTEEE
T ss_pred cchHHHHHHHHHHHhc-cccCCcCEEEEcCCCccHHHHHHHhCCC-CEEEEECCHH-HHHHHHHHHHH-cC--CCCcEEE
Confidence 3333333455555543 2223356899999999999999999875 4899999996 99999887432 11 1147999
Q ss_pred EeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC
Q 045407 172 FHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK 251 (382)
Q Consensus 172 ~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~ 251 (382)
+++|+.+++ + .++||+|++..- +.+ ..
T Consensus 104 ~~~d~~~~~-----------------~----------------------------------~~~~D~Ivs~~~-~~~-~~ 130 (348)
T 2y1w_A 104 IPGKVEEVS-----------------L----------------------------------PEQVDIIISEPM-GYM-LF 130 (348)
T ss_dssp EESCTTTCC-----------------C----------------------------------SSCEEEEEECCC-BTT-BT
T ss_pred EEcchhhCC-----------------C----------------------------------CCceeEEEEeCc-hhc-CC
Confidence 999997765 2 356999998642 222 23
Q ss_pred hhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 252 RADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 252 r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.+.+...|.++++.|+ |||++|+..
T Consensus 131 ~~~~~~~l~~~~~~Lk-pgG~li~~~ 155 (348)
T 2y1w_A 131 NERMLESYLHAKKYLK-PSGNMFPTI 155 (348)
T ss_dssp TTSHHHHHHHGGGGEE-EEEEEESCE
T ss_pred hHHHHHHHHHHHhhcC-CCeEEEEec
Confidence 3567888899999999 999999753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-12 Score=112.70 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=65.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..++ .+|+|+|+|+. ++.++++|+.+++
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------------~~~~~~~d~~~~~------------- 110 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------------DPRVTVCDMAQVP------------- 110 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------------STTEEESCTTSCS-------------
T ss_pred CCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------------CceEEEeccccCC-------------
Confidence 4679999999999998874 36999999996 2457888987654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+...+||+|++.. ++ |. .+...+++.++++|+ |||++
T Consensus 111 -------------------------------------~~~~~fD~v~~~~-~l---~~-~~~~~~l~~~~~~L~-~gG~l 147 (215)
T 2zfu_A 111 -------------------------------------LEDESVDVAVFCL-SL---MG-TNIRDFLEEANRVLK-PGGLL 147 (215)
T ss_dssp -------------------------------------CCTTCEEEEEEES-CC---CS-SCHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------CCCCCEeEEEEeh-hc---cc-cCHHHHHHHHHHhCC-CCeEE
Confidence 1245799999864 33 22 577899999999999 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 148 ~i 149 (215)
T 2zfu_A 148 KV 149 (215)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.3e-13 Score=122.50 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=80.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.+++.|++..+..+|+|||+|+.|+++|+++... + +..+|.++++|+.++...
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~---~l~~v~~~~~d~~~~~~~----------- 145 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV-L---GLKGARALWGRAEVLARE----------- 145 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-H---TCSSEEEEECCHHHHTTS-----------
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-h---CCCceEEEECcHHHhhcc-----------
Confidence 4689999999999999999987778999999999999999998533 2 223599999998654410
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.....+||+|+|-.. .++...++.+++.|+ |||+|
T Consensus 146 ------------------------------------~~~~~~fD~I~s~a~--------~~~~~ll~~~~~~Lk-pgG~l 180 (249)
T 3g89_A 146 ------------------------------------AGHREAYARAVARAV--------APLCVLSELLLPFLE-VGGAA 180 (249)
T ss_dssp ------------------------------------TTTTTCEEEEEEESS--------CCHHHHHHHHGGGEE-EEEEE
T ss_pred ------------------------------------cccCCCceEEEECCc--------CCHHHHHHHHHHHcC-CCeEE
Confidence 000357999998531 356788999999999 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 181 ~~ 182 (249)
T 3g89_A 181 VA 182 (249)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-13 Score=121.63 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCC-cceEEEeccC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGY-SRISLFHGNV 176 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~-~RI~l~~gDV 176 (382)
+.++...+.... .+.+|||+|||||.++..+++.| .+|+|+|+|+.||+.|+++... .+. .++.++++|+
T Consensus 66 ~~~l~~~~~~~~---~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~~~d~ 136 (241)
T 3gdh_A 66 AEHIAGRVSQSF---KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEV----YGIADKIEFICGDF 136 (241)
T ss_dssp HHHHHHHHHHHS---CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH----TTCGGGEEEEESCH
T ss_pred HHHHHHHhhhcc---CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHH----cCCCcCeEEEECCh
Confidence 455555544322 23579999999999999999998 5899999999999999998532 121 3799999998
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
.++. . ...||+|++. ..+.++... .
T Consensus 137 ~~~~-----------------~----------------------------------~~~~D~v~~~-~~~~~~~~~---~ 161 (241)
T 3gdh_A 137 LLLA-----------------S----------------------------------FLKADVVFLS-PPWGGPDYA---T 161 (241)
T ss_dssp HHHG-----------------G----------------------------------GCCCSEEEEC-CCCSSGGGG---G
T ss_pred HHhc-----------------c----------------------------------cCCCCEEEEC-CCcCCcchh---h
Confidence 6654 1 3579999965 355554433 2
Q ss_pred HHHHHHHhhccCCCcEEEEecc
Q 045407 257 LYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
..+..++++|+ |||++|++..
T Consensus 162 ~~~~~~~~~L~-pgG~~i~~~~ 182 (241)
T 3gdh_A 162 AETFDIRTMMS-PDGFEIFRLS 182 (241)
T ss_dssp SSSBCTTTSCS-SCHHHHHHHH
T ss_pred hHHHHHHhhcC-CcceeHHHHH
Confidence 35668889999 9999988763
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-12 Score=108.35 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=78.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.+. .+|+|+|+|++|++.|+++... .+ -..++.++++|+.++...
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~-~~--~~~~~~~~~~d~~~~~~~----------- 109 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAI-TK--EPEKFEVRKMDANRALEQ----------- 109 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHH-HT--CGGGEEEEESCHHHHHHH-----------
T ss_pred CCCEEEeCCccCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHH-hC--CCcceEEEECcHHHHHHH-----------
Confidence 45799999999999999998764 4899999999999999988532 11 113799999998664300
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHH--HhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHV--LHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V--~~~L~~pGG 271 (382)
+.. ....||+|++.. .+. .... ...++.+ ++.|+ |||
T Consensus 110 --~~~---------------------------------~~~~fD~i~~~~-~~~-~~~~---~~~~~~l~~~~~L~-~gG 148 (187)
T 2fhp_A 110 --FYE---------------------------------EKLQFDLVLLDP-PYA-KQEI---VSQLEKMLERQLLT-NEA 148 (187)
T ss_dssp --HHH---------------------------------TTCCEEEEEECC-CGG-GCCH---HHHHHHHHHTTCEE-EEE
T ss_pred --HHh---------------------------------cCCCCCEEEECC-CCC-chhH---HHHHHHHHHhcccC-CCC
Confidence 000 135699999753 222 2233 3344444 88899 999
Q ss_pred EEEEeccCC
Q 045407 272 IFVMDLYGG 280 (382)
Q Consensus 272 iFVfDl~gg 280 (382)
+|++.....
T Consensus 149 ~l~~~~~~~ 157 (187)
T 2fhp_A 149 VIVCETDKT 157 (187)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCc
Confidence 999987643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-12 Score=114.86 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=79.9
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||.++..+++. ++..+|+|+|+|++|++.|+++... .+. ..++.++++|+.++.
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~--~~~v~~~~~d~~~~~------------ 158 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW-AGF--DDRVTIKLKDIYEGI------------ 158 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-HTC--TTTEEEECSCGGGCC------------
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHH-cCC--CCceEEEECchhhcc------------
Confidence 457999999999999999999 7677999999999999999998532 111 236999999986543
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
....||+|++- + .+...+++++++.|+ |||+
T Consensus 159 ---------------------------------------~~~~~D~v~~~------~---~~~~~~l~~~~~~L~-~gG~ 189 (255)
T 3mb5_A 159 ---------------------------------------EEENVDHVILD------L---PQPERVVEHAAKALK-PGGF 189 (255)
T ss_dssp ---------------------------------------CCCSEEEEEEC------S---SCGGGGHHHHHHHEE-EEEE
T ss_pred ---------------------------------------CCCCcCEEEEC------C---CCHHHHHHHHHHHcC-CCCE
Confidence 13569999872 1 233567999999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+++-..
T Consensus 190 l~~~~~ 195 (255)
T 3mb5_A 190 FVAYTP 195 (255)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 998553
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=121.78 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=78.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++.|.. +|+|+|+|+.|+++|+++... .+- ..++.++++|+.++.
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~-n~~--~~~v~~~~~D~~~~~-------------- 188 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHL-NKV--EDRMSAYNMDNRDFP-------------- 188 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHH-TTC--TTTEEEECSCTTTCC--------------
T ss_pred CEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHH-cCC--CceEEEEECCHHHhc--------------
Confidence 47999999999999999999975 799999999999999998532 111 136999999998776
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. ...||+|++- .. .....+++.++++|+ |||+|+
T Consensus 189 ---~----------------------------------~~~fD~Vi~~-----~p---~~~~~~l~~~~~~Lk-pgG~l~ 222 (278)
T 2frn_A 189 ---G----------------------------------ENIADRILMG-----YV---VRTHEFIPKALSIAK-DGAIIH 222 (278)
T ss_dssp ---C----------------------------------CSCEEEEEEC-----CC---SSGGGGHHHHHHHEE-EEEEEE
T ss_pred ---c----------------------------------cCCccEEEEC-----Cc---hhHHHHHHHHHHHCC-CCeEEE
Confidence 1 3569999872 11 122567889999999 999999
Q ss_pred Eec
Q 045407 275 MDL 277 (382)
Q Consensus 275 fDl 277 (382)
+-.
T Consensus 223 ~~~ 225 (278)
T 2frn_A 223 YHN 225 (278)
T ss_dssp EEE
T ss_pred EEE
Confidence 843
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-12 Score=112.26 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=79.1
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++. |+..+|+|+|+|+.|++.++++... ..++.++++|+.++..
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~------~~~v~~~~~d~~~~~~----------- 136 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEE----------- 136 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGG-----------
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc------cCCCEEEEccCCCcch-----------
Confidence 347999999999999999987 5556899999999999999988532 1479999999987541
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+. .+ ...||+|++-.. .......+++++++.|+ |||+
T Consensus 137 -----~~------------------------------~~-~~~~D~v~~~~~------~~~~~~~~l~~~~~~Lk-pgG~ 173 (227)
T 1g8a_A 137 -----YR------------------------------AL-VPKVDVIFEDVA------QPTQAKILIDNAEVYLK-RGGY 173 (227)
T ss_dssp -----GT------------------------------TT-CCCEEEEEECCC------STTHHHHHHHHHHHHEE-EEEE
T ss_pred -----hh------------------------------cc-cCCceEEEECCC------CHhHHHHHHHHHHHhcC-CCCE
Confidence 00 00 246999996432 33444566999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
|++-
T Consensus 174 l~~~ 177 (227)
T 1g8a_A 174 GMIA 177 (227)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=116.36 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=80.6
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+...+..+.. ..+.+|||+|||||.++..+++..+..+|+|+|+|+.|++.|+++. .++.++++|+.+++
T Consensus 74 ~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~ 143 (269)
T 1p91_A 74 IVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRLP 143 (269)
T ss_dssp HHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSCS
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhCC
Confidence 3444444332 2245799999999999999999843458999999999999999874 25789999987655
Q ss_pred hhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHH
Q 045407 181 EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFK 260 (382)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr 260 (382)
+ ...+||+|++... ...++
T Consensus 144 -----------------~---------------------------------~~~~fD~v~~~~~-----------~~~l~ 162 (269)
T 1p91_A 144 -----------------F---------------------------------SDTSMDAIIRIYA-----------PCKAE 162 (269)
T ss_dssp -----------------B---------------------------------CTTCEEEEEEESC-----------CCCHH
T ss_pred -----------------C---------------------------------CCCceeEEEEeCC-----------hhhHH
Confidence 1 2457999998542 12478
Q ss_pred HHHhhccCCCcEEEEeccC
Q 045407 261 HVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 261 ~V~~~L~~pGGiFVfDl~g 279 (382)
.+++.|+ |||+|++-..+
T Consensus 163 ~~~~~L~-pgG~l~~~~~~ 180 (269)
T 1p91_A 163 ELARVVK-PGGWVITATPG 180 (269)
T ss_dssp HHHHHEE-EEEEEEEEEEC
T ss_pred HHHHhcC-CCcEEEEEEcC
Confidence 9999999 99999985544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=114.42 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=79.8
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++.....+ ..++.++++|+.+.+
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~------------ 161 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEAE------------ 161 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGCC------------
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhcC------------
Confidence 457999999999999999998 6667899999999999999998532101 247999999986653
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+....||+|++- +. +...++++++++|+ |||+
T Consensus 162 --------------------------------------~~~~~~D~v~~~------~~---~~~~~l~~~~~~L~-~gG~ 193 (258)
T 2pwy_A 162 --------------------------------------LEEAAYDGVALD------LM---EPWKVLEKAALALK-PDRF 193 (258)
T ss_dssp --------------------------------------CCTTCEEEEEEE------SS---CGGGGHHHHHHHEE-EEEE
T ss_pred --------------------------------------CCCCCcCEEEEC------Cc---CHHHHHHHHHHhCC-CCCE
Confidence 113569999972 22 33478999999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+++-..
T Consensus 194 l~~~~~ 199 (258)
T 2pwy_A 194 LVAYLP 199 (258)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 998553
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-13 Score=121.53 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
...++..+... . .|.+|||+|||||..+..||+.-+ ..+|+|||+|++|++.|+++... .+- ..+|.++++|
T Consensus 48 ~~~~l~~l~~~-~---~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~--~~~i~~~~gd 120 (242)
T 3r3h_A 48 QAQFMQMLIRL-T---RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE-AKQ--EHKIKLRLGP 120 (242)
T ss_dssp HHHHHHHHHHH-H---TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHH-TTC--TTTEEEEESC
T ss_pred HHHHHHHHHhh-c---CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEEcC
Confidence 33555555443 2 255799999999999999998643 56899999999999999987532 111 2489999999
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL 255 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL 255 (382)
+.+.... +. .. ...++||+|++-.. ....
T Consensus 121 a~~~l~~---------------~~---------------~~--------------~~~~~fD~V~~d~~-------~~~~ 149 (242)
T 3r3h_A 121 ALDTLHS---------------LL---------------NE--------------GGEHQFDFIFIDAD-------KTNY 149 (242)
T ss_dssp HHHHHHH---------------HH---------------HH--------------HCSSCEEEEEEESC-------GGGH
T ss_pred HHHHHHH---------------Hh---------------hc--------------cCCCCEeEEEEcCC-------hHHh
Confidence 8664310 00 00 00257999987542 3567
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 045407 256 VLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfD 276 (382)
..+|+.+++.|+ |||++|+|
T Consensus 150 ~~~l~~~~~~Lk-pGG~lv~d 169 (242)
T 3r3h_A 150 LNYYELALKLVT-PKGLIAID 169 (242)
T ss_dssp HHHHHHHHHHEE-EEEEEEEE
T ss_pred HHHHHHHHHhcC-CCeEEEEE
Confidence 889999999999 99999996
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=117.32 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh----CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS----DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~----g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
....+..++... . +.+|||+|||||.++..|++. ++..+|+|||+|++||+.|+.. ..+|.++
T Consensus 69 ~~~~l~~~l~~~-~---~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---------~~~v~~~ 135 (236)
T 2bm8_A 69 TQAVYHDMLWEL-R---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---------MENITLH 135 (236)
T ss_dssp HHHHHHHHHHHH-C---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---------CTTEEEE
T ss_pred HHHHHHHHHHhc-C---CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---------CCceEEE
Confidence 345555555432 2 457999999999999999997 5667999999999999877621 1479999
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
++|+.++.. +.. +...+||+|++... |
T Consensus 136 ~gD~~~~~~--------------l~~--------------------------------~~~~~fD~I~~d~~-----~-- 162 (236)
T 2bm8_A 136 QGDCSDLTT--------------FEH--------------------------------LREMAHPLIFIDNA-----H-- 162 (236)
T ss_dssp ECCSSCSGG--------------GGG--------------------------------GSSSCSSEEEEESS-----C--
T ss_pred ECcchhHHH--------------HHh--------------------------------hccCCCCEEEECCc-----h--
Confidence 999987520 000 00236999987432 2
Q ss_pred hHHHHHHHHHHh-hccCCCcEEEEec
Q 045407 253 ADLVLYFKHVLH-ALSKKGGIFVMDL 277 (382)
Q Consensus 253 ~dL~~yFr~V~~-~L~~pGGiFVfDl 277 (382)
.++..+|+.+++ .|+ |||+||++.
T Consensus 163 ~~~~~~l~~~~r~~Lk-pGG~lv~~d 187 (236)
T 2bm8_A 163 ANTFNIMKWAVDHLLE-EGDYFIIED 187 (236)
T ss_dssp SSHHHHHHHHHHHTCC-TTCEEEECS
T ss_pred HhHHHHHHHHHHhhCC-CCCEEEEEe
Confidence 267789999997 999 999999953
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-12 Score=135.76 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhcccccc--CCCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVG--ADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~--~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
+.+|||+|||||.++..|++.+ +..+|+|||+|+.||++|+++....+. ..+..+|.|+++|+.+++.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~--------- 792 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS--------- 792 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT---------
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc---------
Confidence 4579999999999999999998 445899999999999999985322111 1133589999999988761
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
....||+|++. .++.|+.+ ..+..+++.+++.|+ ||
T Consensus 793 -----------------------------------------~d~sFDlVV~~-eVLeHL~d-p~l~~~L~eI~RvLK-PG 828 (950)
T 3htx_A 793 -----------------------------------------RLHDVDIGTCL-EVIEHMEE-DQACEFGEKVLSLFH-PK 828 (950)
T ss_dssp -----------------------------------------TSCSCCEEEEE-SCGGGSCH-HHHHHHHHHHHHTTC-CS
T ss_pred -----------------------------------------ccCCeeEEEEe-CchhhCCh-HHHHHHHHHHHHHcC-CC
Confidence 24679999995 57888765 566789999999999 89
Q ss_pred cEEEEec
Q 045407 271 GIFVMDL 277 (382)
Q Consensus 271 GiFVfDl 277 (382)
++|+..
T Consensus 829 -~LIIST 834 (950)
T 3htx_A 829 -LLIVST 834 (950)
T ss_dssp -EEEEEE
T ss_pred -EEEEEe
Confidence 555543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=110.53 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=76.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.+ .+|+|+|+|+.|++.|+++... .+ ++.++++|+.+..
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~----~~--~v~~~~~d~~~~~------------- 129 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY----YN--NIKLILGDGTLGY------------- 129 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT----CS--SEEEEESCGGGCC-------------
T ss_pred CCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhh----cC--CeEEEECCccccc-------------
Confidence 4579999999999999999998 5899999999999999998522 11 7999999986522
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ...+||+|++.. .+.++. ..+++.|+ |||++
T Consensus 130 ----~---------------------------------~~~~fD~v~~~~-~~~~~~---------~~~~~~L~-pgG~l 161 (231)
T 1vbf_A 130 ----E---------------------------------EEKPYDRVVVWA-TAPTLL---------CKPYEQLK-EGGIM 161 (231)
T ss_dssp ----G---------------------------------GGCCEEEEEESS-BBSSCC---------HHHHHTEE-EEEEE
T ss_pred ----c---------------------------------cCCCccEEEECC-cHHHHH---------HHHHHHcC-CCcEE
Confidence 0 035699999875 444443 35788999 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
|+.+..
T Consensus 162 ~~~~~~ 167 (231)
T 1vbf_A 162 ILPIGV 167 (231)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 998753
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=120.24 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccc--------cccCCCCcceEEEeccCCCchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLN--------KVGADGYSRISLFHGNVLQPLEAKL 184 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~--------kl~~d~~~RI~l~~gDV~~~~~~~~ 184 (382)
..+|||+|||+|.++..+++. |+..+|+|+|+|++|++.|+++... .+. ....+|.++++|+.+...
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~-~~~~~v~~~~~d~~~~~~--- 181 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE-EWPDNVDFIHKDISGATE--- 181 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS-CCCCCEEEEESCTTCCC----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc-ccCCceEEEECChHHccc---
Confidence 457999999999999999998 7767999999999999999997532 000 012479999999977530
Q ss_pred cccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHh
Q 045407 185 VRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLH 264 (382)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~ 264 (382)
.+....||+|++-.- .. ...++++++
T Consensus 182 ---------------------------------------------~~~~~~fD~V~~~~~------~~---~~~l~~~~~ 207 (336)
T 2b25_A 182 ---------------------------------------------DIKSLTFDAVALDML------NP---HVTLPVFYP 207 (336)
T ss_dssp ---------------------------------------------------EEEEEECSS------ST---TTTHHHHGG
T ss_pred ---------------------------------------------ccCCCCeeEEEECCC------CH---HHHHHHHHH
Confidence 011346999997321 11 227899999
Q ss_pred hccCCCcEEEEecc
Q 045407 265 ALSKKGGIFVMDLY 278 (382)
Q Consensus 265 ~L~~pGGiFVfDl~ 278 (382)
.|+ |||+|++-..
T Consensus 208 ~Lk-pgG~lv~~~~ 220 (336)
T 2b25_A 208 HLK-HGGVCAVYVV 220 (336)
T ss_dssp GEE-EEEEEEEEES
T ss_pred hcC-CCcEEEEEeC
Confidence 999 9999997544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=113.82 Aligned_cols=102 Identities=18% Similarity=0.066 Sum_probs=78.9
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||..+..+++.-+ ..+|+|||+|+.|++.|+++... .+- ..+|.++++|+.+...
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~v~~~~~d~~~~~~----------- 122 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD-NGL--IDRVELQVGDPLGIAA----------- 122 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HSG--GGGEEEEESCHHHHHT-----------
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCC--CceEEEEEecHHHHhc-----------
Confidence 45799999999999999998744 46899999999999999987532 111 1379999999765320
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. + .. ||+|++-.. ..+...+|+.+++.|+ |||+
T Consensus 123 -----~--------------------------------~-~~-fD~v~~~~~-------~~~~~~~l~~~~~~Lk-pgG~ 155 (210)
T 3c3p_A 123 -----G--------------------------------Q-RD-IDILFMDCD-------VFNGADVLERMNRCLA-KNAL 155 (210)
T ss_dssp -----T--------------------------------C-CS-EEEEEEETT-------TSCHHHHHHHHGGGEE-EEEE
T ss_pred -----c--------------------------------C-CC-CCEEEEcCC-------hhhhHHHHHHHHHhcC-CCeE
Confidence 0 0 24 999987532 2456789999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
+|+|
T Consensus 156 lv~~ 159 (210)
T 3c3p_A 156 LIAV 159 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=115.67 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=80.9
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
|.+|||+|||||..+..+++.-+ ..+|+|+|+|++|++.|+++... .+ -..+|.++++|..+...
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g--~~~~i~~~~gda~~~l~----------- 145 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK-AG--VDHKIDFREGPALPVLD----------- 145 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH-TT--CGGGEEEEESCHHHHHH-----------
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cC--CCCCeEEEECCHHHHHH-----------
Confidence 56899999999999999999843 46899999999999999997532 11 12479999999865420
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. +.. .++...+||+|++-.. ......+|+.+++.|+ |||+
T Consensus 146 --~--l~~----------------------------~~~~~~~fD~V~~d~~-------~~~~~~~l~~~~~~Lk-pGG~ 185 (247)
T 1sui_A 146 --E--MIK----------------------------DEKNHGSYDFIFVDAD-------KDNYLNYHKRLIDLVK-VGGV 185 (247)
T ss_dssp --H--HHH----------------------------SGGGTTCBSEEEECSC-------STTHHHHHHHHHHHBC-TTCC
T ss_pred --H--HHh----------------------------ccCCCCCEEEEEEcCc-------hHHHHHHHHHHHHhCC-CCeE
Confidence 0 000 0000256999987532 2456889999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
+|+|
T Consensus 186 lv~d 189 (247)
T 1sui_A 186 IGYD 189 (247)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-12 Score=131.01 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=83.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|++|||+|||+|.+|..||++|. +|+|||+|+.||+.|+.++.. .+...|.+.++++.++..
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~----~~~~~~~~~~~~~~~~~~------------ 128 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEE----NPDFAAEFRVGRIEEVIA------------ 128 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT----STTSEEEEEECCHHHHHH------------
T ss_pred CCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHh----cCCCceEEEECCHHHHhh------------
Confidence 78899999999999999999995 799999999999999998643 233579999999876531
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. +...+||+|+|+. .+-|+.+...+. ....+...|++.+-.|
T Consensus 129 ----~--------------------------------~~~~~fD~v~~~e-~~ehv~~~~~~~-~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 129 ----A--------------------------------LEEGEFDLAIGLS-VFHHIVHLHGID-EVKRLLSRLADVTQAV 170 (569)
T ss_dssp ----H--------------------------------CCTTSCSEEEEES-CHHHHHHHHCHH-HHHHHHHHHHHHSSEE
T ss_pred ----h--------------------------------ccCCCccEEEECc-chhcCCCHHHHH-HHHHHHHHhcccccee
Confidence 0 1146799999986 777777654433 3445777788444567
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
++-+.+
T Consensus 171 ~~~~~~ 176 (569)
T 4azs_A 171 ILELAV 176 (569)
T ss_dssp EEECCC
T ss_pred eEEecc
Confidence 777654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.7e-12 Score=118.96 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
.|.+|||+|||+|.++.++++..+..+|++||+|++|+++|+++... +. .-...|+.++++|.++...
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~-~~~~~~~~rv~v~~~D~~~~l~---------- 143 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPS-IAGKLDDPRVDVQVDDGFMHIA---------- 143 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHH-HHTTTTSTTEEEEESCSHHHHH----------
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHh-hccccCCCceEEEECcHHHHHh----------
Confidence 47789999999999999999884446899999999999999997421 10 1123589999999865430
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH--HHHHHHHHHhhccCC
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSKK 269 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~p 269 (382)
. ...+||+|++-. ......... ...+|+.++++|+ |
T Consensus 144 ------~---------------------------------~~~~fD~Ii~d~--~~~~~~~~~l~~~~~~~~~~~~L~-p 181 (275)
T 1iy9_A 144 ------K---------------------------------SENQYDVIMVDS--TEPVGPAVNLFTKGFYAGIAKALK-E 181 (275)
T ss_dssp ------T---------------------------------CCSCEEEEEESC--SSCCSCCCCCSTTHHHHHHHHHEE-E
T ss_pred ------h---------------------------------CCCCeeEEEECC--CCCCCcchhhhHHHHHHHHHHhcC-C
Confidence 0 135699999843 222111111 2578999999999 9
Q ss_pred CcEEEEeccC
Q 045407 270 GGIFVMDLYG 279 (382)
Q Consensus 270 GGiFVfDl~g 279 (382)
||+||+....
T Consensus 182 gG~lv~~~~~ 191 (275)
T 1iy9_A 182 DGIFVAQTDN 191 (275)
T ss_dssp EEEEEEECCC
T ss_pred CcEEEEEcCC
Confidence 9999998643
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-12 Score=110.01 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=78.1
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++.+ +..+|+|+|+|+.|++.|+++... . +..++.++++|+..+.
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~---~~~~v~~~~~d~~~~~------------ 141 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-L---GYDNVIVIVGDGTLGY------------ 141 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-H---TCTTEEEEESCGGGCC------------
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-c---CCCCeEEEECCcccCC------------
Confidence 4579999999999999999987 446899999999999999987532 1 2236899999974332
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. ...+||+|++.. ++.++. ..+++.|+ |||+
T Consensus 142 -----~---------------------------------~~~~fD~v~~~~-~~~~~~---------~~~~~~L~-pgG~ 172 (215)
T 2yxe_A 142 -----E---------------------------------PLAPYDRIYTTA-AGPKIP---------EPLIRQLK-DGGK 172 (215)
T ss_dssp -----G---------------------------------GGCCEEEEEESS-BBSSCC---------HHHHHTEE-EEEE
T ss_pred -----C---------------------------------CCCCeeEEEECC-chHHHH---------HHHHHHcC-CCcE
Confidence 0 035699999875 444443 37889999 9999
Q ss_pred EEEeccCC
Q 045407 273 FVMDLYGG 280 (382)
Q Consensus 273 FVfDl~gg 280 (382)
+|+-+..+
T Consensus 173 lv~~~~~~ 180 (215)
T 2yxe_A 173 LLMPVGRY 180 (215)
T ss_dssp EEEEESSS
T ss_pred EEEEECCC
Confidence 99987644
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=125.04 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=83.9
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+|||+|||+|.++.++++..+..+|+|||+|+.|++.|+++... +. .-...+|.++++|+.++..
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~-~~~gl~~~rv~~~~~D~~~~l~--------- 188 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD-VAIGYEDPRVNLVIGDGVAFLK--------- 188 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH-HHGGGGSTTEEEEESCHHHHHH---------
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh-hccccCCCcEEEEECCHHHHHH---------
Confidence 347789999999999999999986556899999999999999997532 10 0012489999999865430
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH--HHHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~ 268 (382)
. +...+||+|++-.. ..++.... ...+|+.++++|+
T Consensus 189 -------~--------------------------------~~~~~fDlIi~d~~--~p~~~~~~l~~~~~l~~~~~~Lk- 226 (334)
T 1xj5_A 189 -------N--------------------------------AAEGSYDAVIVDSS--DPIGPAKELFEKPFFQSVARALR- 226 (334)
T ss_dssp -------T--------------------------------SCTTCEEEEEECCC--CTTSGGGGGGSHHHHHHHHHHEE-
T ss_pred -------h--------------------------------ccCCCccEEEECCC--CccCcchhhhHHHHHHHHHHhcC-
Confidence 0 11357999998432 12222222 3789999999999
Q ss_pred CCcEEEEec
Q 045407 269 KGGIFVMDL 277 (382)
Q Consensus 269 pGGiFVfDl 277 (382)
|||+||++.
T Consensus 227 pgG~lv~~~ 235 (334)
T 1xj5_A 227 PGGVVCTQA 235 (334)
T ss_dssp EEEEEEEEC
T ss_pred CCcEEEEec
Confidence 999999974
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=111.40 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.....++..+... . .+.+|||+|||||.++..+++..+ ..+|+|+|+|++|++.|+++... .+. ..+|.+++
T Consensus 55 ~~~~~~l~~l~~~-~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~--~~~i~~~~ 127 (229)
T 2avd_A 55 CEQAQLLANLARL-I---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ-AEA--EHKIDLRL 127 (229)
T ss_dssp HHHHHHHHHHHHH-T---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH-TTC--TTTEEEEE
T ss_pred HHHHHHHHHHHHh-c---CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCC--CCeEEEEE
Confidence 3344566555543 2 245799999999999999998743 46899999999999999987532 111 14799999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
+|+.+... . +. .. -...+||+|++-.. ..
T Consensus 128 ~d~~~~~~-------------~--~~----------------~~-------------~~~~~~D~v~~d~~-------~~ 156 (229)
T 2avd_A 128 KPALETLD-------------E--LL----------------AA-------------GEAGTFDVAVVDAD-------KE 156 (229)
T ss_dssp SCHHHHHH-------------H--HH----------------HT-------------TCTTCEEEEEECSC-------ST
T ss_pred cCHHHHHH-------------H--HH----------------hc-------------CCCCCccEEEECCC-------HH
Confidence 99854320 0 00 00 00157999998432 34
Q ss_pred HHHHHHHHHHhhccCCCcEEEEe
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
....+|+.+.+.|+ |||++|+|
T Consensus 157 ~~~~~l~~~~~~L~-pgG~lv~~ 178 (229)
T 2avd_A 157 NCSAYYERCLQLLR-PGGILAVL 178 (229)
T ss_dssp THHHHHHHHHHHEE-EEEEEEEE
T ss_pred HHHHHHHHHHHHcC-CCeEEEEE
Confidence 56789999999999 99999996
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.28 E-value=7.8e-12 Score=114.29 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=77.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc--ccCC--CCcceEEEeccCCCchhhhhcccchh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK--VGAD--GYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k--l~~d--~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|||+|||||.++..+++.++...|+|||+|+.||+.|+++.... .... +..++.++++|+.+... .
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~-~------- 122 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP-N------- 122 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG-G-------
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH-H-------
Confidence 4689999999999999999998778999999999999999874320 0000 22479999999976320 0
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH-----HHHHHHHHHhh
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD-----LVLYFKHVLHA 265 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d-----L~~yFr~V~~~ 265 (382)
. +....+|.|+..+ +--++..+.. ...+++.+.+.
T Consensus 123 -------~--------------------------------~~~~~~d~v~~~~-p~p~~k~~~~~~r~~~~~~l~~~~~~ 162 (246)
T 2vdv_E 123 -------F--------------------------------FEKGQLSKMFFCF-PDPHFKQRKHKARIITNTLLSEYAYV 162 (246)
T ss_dssp -------T--------------------------------SCTTCEEEEEEES-CCCC------CSSCCCHHHHHHHHHH
T ss_pred -------h--------------------------------ccccccCEEEEEC-CCcccccchhHHhhccHHHHHHHHHH
Confidence 0 2245678776442 2222222111 14789999999
Q ss_pred ccCCCcEEEE
Q 045407 266 LSKKGGIFVM 275 (382)
Q Consensus 266 L~~pGGiFVf 275 (382)
|+ |||+|++
T Consensus 163 Lk-pgG~l~~ 171 (246)
T 2vdv_E 163 LK-EGGVVYT 171 (246)
T ss_dssp EE-EEEEEEE
T ss_pred cC-CCCEEEE
Confidence 99 9999998
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=120.47 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC--------CCcceEEEeccCCCchhhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD--------GYSRISLFHGNVLQPLEAKL 184 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d--------~~~RI~l~~gDV~~~~~~~~ 184 (382)
.|.+|||+|||+|.++.++++. +..+|+|||+|++|+++|+++. . +... ...++.++++|+++...
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~-~~~~l~~~~~~~~~~~v~~~~~D~~~~l~--- 148 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-K-IDNGLLEAMLNGKHEKAKLTIGDGFEFIK--- 148 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-C-TTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-h-hccccccccccCCCCcEEEEECchHHHhc---
Confidence 4678999999999999999998 4468999999999999999985 2 2100 12589999999865430
Q ss_pred cccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHH
Q 045407 185 VRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHV 262 (382)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V 262 (382)
. ..+||+|++-.. ..+.....+ ..+|+.+
T Consensus 149 ----------------------------------------------~-~~~fD~Ii~d~~--~~~~~~~~l~~~~~l~~~ 179 (281)
T 1mjf_A 149 ----------------------------------------------N-NRGFDVIIADST--DPVGPAKVLFSEEFYRYV 179 (281)
T ss_dssp ----------------------------------------------H-CCCEEEEEEECC--CCC-----TTSHHHHHHH
T ss_pred ----------------------------------------------c-cCCeeEEEECCC--CCCCcchhhhHHHHHHHH
Confidence 0 246999997432 222222343 7889999
Q ss_pred HhhccCCCcEEEEec
Q 045407 263 LHALSKKGGIFVMDL 277 (382)
Q Consensus 263 ~~~L~~pGGiFVfDl 277 (382)
+++|+ |||+|++..
T Consensus 180 ~~~L~-pgG~lv~~~ 193 (281)
T 1mjf_A 180 YDALN-NPGIYVTQA 193 (281)
T ss_dssp HHHEE-EEEEEEEEE
T ss_pred HHhcC-CCcEEEEEc
Confidence 99999 999999975
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=111.48 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.++..++... . +.+|||+|||+|.++..+++..+..+|+|+|+|+++++.|+++... .+. ..+|.++++|+.+
T Consensus 44 ~~l~~~~~~~-~---~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~--~~~v~~~~~d~~~ 116 (233)
T 2gpy_A 44 ESLLHLLKMA-A---PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKA-LGL--ESRIELLFGDALQ 116 (233)
T ss_dssp HHHHHHHHHH-C---CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-TTC--TTTEEEECSCGGG
T ss_pred HHHHHHHhcc-C---CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECCHHH
Confidence 5555555432 2 3479999999999999999996657899999999999999998532 111 1379999999876
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
.... + ....+||+|++... + .+...+
T Consensus 117 ~~~~---------------~--------------------------------~~~~~fD~I~~~~~-~------~~~~~~ 142 (233)
T 2gpy_A 117 LGEK---------------L--------------------------------ELYPLFDVLFIDAA-K------GQYRRF 142 (233)
T ss_dssp SHHH---------------H--------------------------------TTSCCEEEEEEEGG-G------SCHHHH
T ss_pred HHHh---------------c--------------------------------ccCCCccEEEECCC-H------HHHHHH
Confidence 4200 0 00256999987432 1 367889
Q ss_pred HHHHHhhccCCCcEEEEe
Q 045407 259 FKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfD 276 (382)
|+.+++.|+ |||++|++
T Consensus 143 l~~~~~~L~-pgG~lv~~ 159 (233)
T 2gpy_A 143 FDMYSPMVR-PGGLILSD 159 (233)
T ss_dssp HHHHGGGEE-EEEEEEEE
T ss_pred HHHHHHHcC-CCeEEEEE
Confidence 999999999 99999996
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=117.21 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=81.1
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
...|||+|||||.++++++..+ +..+|+|+|+|+.|++.|+++... .+..+|.++++|+.+++.
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~----~g~~~i~~~~~D~~~~~~----------- 268 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA----SGLSWIRFLRADARHLPR----------- 268 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH----TTCTTCEEEECCGGGGGG-----------
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH----cCCCceEEEeCChhhCcc-----------
Confidence 4579999999999999999987 666899999999999999998633 222379999999987661
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc-cCChhH----HHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC-LHKRAD----LVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y-L~~r~d----L~~yFr~V~~~L~ 267 (382)
..+.||+|++-- .|+. +.+..+ ....++.+.+.|+
T Consensus 269 ---------------------------------------~~~~~D~Ii~np-Pyg~r~~~~~~~~~~~~~~~~~~~~~Lk 308 (354)
T 3tma_A 269 ---------------------------------------FFPEVDRILANP-PHGLRLGRKEGLFHLYWDFLRGALALLP 308 (354)
T ss_dssp ---------------------------------------TCCCCSEEEECC-CSCC----CHHHHHHHHHHHHHHHHTSC
T ss_pred ---------------------------------------ccCCCCEEEECC-CCcCccCCcccHHHHHHHHHHHHHHhcC
Confidence 134589988721 2221 111122 3678889999999
Q ss_pred CCCcEEEEecc
Q 045407 268 KKGGIFVMDLY 278 (382)
Q Consensus 268 ~pGGiFVfDl~ 278 (382)
|||.+++=..
T Consensus 309 -pgG~l~i~t~ 318 (354)
T 3tma_A 309 -PGGRVALLTL 318 (354)
T ss_dssp -TTCEEEEEES
T ss_pred -CCcEEEEEeC
Confidence 9999999543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=112.66 Aligned_cols=124 Identities=21% Similarity=0.240 Sum_probs=87.4
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
.+....++..+.... . +.+|||+|||+|..+..|++.-+ ..+|+|+|+|+++++.|+++... .+- ..+|.++
T Consensus 57 ~~~~~~~l~~l~~~~-~---~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~--~~~i~~~ 129 (232)
T 3cbg_A 57 SPEQAQFLGLLISLT-G---AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK-AGV--AEKISLR 129 (232)
T ss_dssp CHHHHHHHHHHHHHH-T---CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HTC--GGGEEEE
T ss_pred CHHHHHHHHHHHHhc-C---CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEE
Confidence 344445665555432 2 45799999999999999998744 46899999999999999987432 111 1479999
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
++|+.+... .+.. . + ..++||+|++... .
T Consensus 130 ~~d~~~~l~-------------~l~~------------------~------------~-~~~~fD~V~~d~~-------~ 158 (232)
T 3cbg_A 130 LGPALATLE-------------QLTQ------------------G------------K-PLPEFDLIFIDAD-------K 158 (232)
T ss_dssp ESCHHHHHH-------------HHHT------------------S------------S-SCCCEEEEEECSC-------G
T ss_pred EcCHHHHHH-------------HHHh------------------c------------C-CCCCcCEEEECCC-------H
Confidence 999754320 0000 0 0 0157999987543 3
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEe
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
.....+|+.+++.|+ |||++|+|
T Consensus 159 ~~~~~~l~~~~~~Lk-pgG~lv~~ 181 (232)
T 3cbg_A 159 RNYPRYYEIGLNLLR-RGGLMVID 181 (232)
T ss_dssp GGHHHHHHHHHHTEE-EEEEEEEE
T ss_pred HHHHHHHHHHHHHcC-CCeEEEEe
Confidence 567889999999999 99999997
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-12 Score=119.81 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=85.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC-CCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA-DGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~-d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+|||+|||+|.++.++++..+..+|++||+|+.|+++|+++... ++. -...|+.++++|+++...
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~-~~~~~~~~~v~~~~~D~~~~l~--------- 146 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN-ISCGYEDKRVNVFIEDASKFLE--------- 146 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT-TSGGGGSTTEEEEESCHHHHHH---------
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH-hccccCCCcEEEEECChHHHHH---------
Confidence 347789999999999999999986667899999999999999997522 110 012589999999865430
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~ 268 (382)
. ...+||+|++- +...+.....+ ..+|+.++++|+
T Consensus 147 -------~---------------------------------~~~~fD~Ii~d--~~~~~~~~~~l~~~~~l~~~~~~L~- 183 (283)
T 2i7c_A 147 -------N---------------------------------VTNTYDVIIVD--SSDPIGPAETLFNQNFYEKIYNALK- 183 (283)
T ss_dssp -------H---------------------------------CCSCEEEEEEE--CCCTTTGGGGGSSHHHHHHHHHHEE-
T ss_pred -------h---------------------------------CCCCceEEEEc--CCCCCCcchhhhHHHHHHHHHHhcC-
Confidence 0 03569999983 22333333455 699999999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||+||+...
T Consensus 184 pgG~lv~~~~ 193 (283)
T 2i7c_A 184 PNGYCVAQCE 193 (283)
T ss_dssp EEEEEEEECC
T ss_pred CCcEEEEECC
Confidence 9999999754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=119.92 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
.|.+|||+|||||.++.++++..+..+|+|||+|++|+++|+++... +. .-...++.++++|+.++..
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~-~~~~~~~~~v~~~~~D~~~~l~---------- 184 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN-ISCGYEDKRVNVFIEDASKFLE---------- 184 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT-TSGGGGSTTEEEEESCHHHHHH----------
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh-hccccCCCcEEEEEccHHHHHh----------
Confidence 46789999999999999999885556899999999999999998532 10 0012489999999865430
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccCC
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSKK 269 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~p 269 (382)
. ...+||+|++-. ...+.....+ ..+|+.++++|+ |
T Consensus 185 ------~---------------------------------~~~~fDvIi~d~--~~p~~~~~~l~~~~~l~~~~~~Lk-p 222 (321)
T 2pt6_A 185 ------N---------------------------------VTNTYDVIIVDS--SDPIGPAETLFNQNFYEKIYNALK-P 222 (321)
T ss_dssp ------H---------------------------------CCSCEEEEEEEC--CCSSSGGGGGSSHHHHHHHHHHEE-E
T ss_pred ------h---------------------------------cCCCceEEEECC--cCCCCcchhhhHHHHHHHHHHhcC-C
Confidence 0 035699999743 2222222334 689999999999 9
Q ss_pred CcEEEEeccC
Q 045407 270 GGIFVMDLYG 279 (382)
Q Consensus 270 GGiFVfDl~g 279 (382)
||+|++....
T Consensus 223 gG~lv~~~~~ 232 (321)
T 2pt6_A 223 NGYCVAQCES 232 (321)
T ss_dssp EEEEEEEECC
T ss_pred CcEEEEEcCC
Confidence 9999997643
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=122.55 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=84.1
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHhccccccCCCCcceEEEe
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWC-------MENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A-------~e~~~~kl~~d~~~RI~l~~ 173 (382)
+..++.. ++-....+|||+|||||.++..+|+.....+|+|||+|+.|+++| +++... .+- ...+|.+++
T Consensus 231 v~~ml~~-l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~-~Gl-~~~nV~~i~ 307 (433)
T 1u2z_A 231 LSDVYQQ-CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKL-YGM-RLNNVEFSL 307 (433)
T ss_dssp HHHHHHH-TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH-TTB-CCCCEEEEE
T ss_pred HHHHHHh-cCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH-cCC-CCCceEEEE
Confidence 3444433 333334689999999999999999975445899999999999999 665321 110 024799999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
+|.....+. +. ....+||+|++.+..+ . .
T Consensus 308 gD~~~~~~~---------------~~-------------------------------~~~~~FDvIvvn~~l~---~--~ 336 (433)
T 1u2z_A 308 KKSFVDNNR---------------VA-------------------------------ELIPQCDVILVNNFLF---D--E 336 (433)
T ss_dssp SSCSTTCHH---------------HH-------------------------------HHGGGCSEEEECCTTC---C--H
T ss_pred cCccccccc---------------cc-------------------------------cccCCCCEEEEeCccc---c--c
Confidence 864321110 00 0024699999755331 1 6
Q ss_pred HHHHHHHHHHhhccCCCcEEEE-eccC
Q 045407 254 DLVLYFKHVLHALSKKGGIFVM-DLYG 279 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVf-Dl~g 279 (382)
++...|+.+++.|+ |||++|+ |.++
T Consensus 337 d~~~~L~el~r~LK-pGG~lVi~d~f~ 362 (433)
T 1u2z_A 337 DLNKKVEKILQTAK-VGCKIISLKSLR 362 (433)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEESSCSS
T ss_pred cHHHHHHHHHHhCC-CCeEEEEeeccC
Confidence 78889999999999 9999998 5443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=108.62 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=90.3
Q ss_pred CCchHHHHHHhhcCC-----hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 045407 80 MPSKFLLYQQSVQSP-----KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCM 154 (382)
Q Consensus 80 ~p~~~~LYd~~vq~p-----~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~ 154 (382)
.|....+.+..+... ..++.++...+ +-....+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|+
T Consensus 57 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~ 130 (248)
T 2yvl_A 57 RPTLEEIILLGFERKTQIIYPKDSFYIALKL----NLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQ 130 (248)
T ss_dssp CCCHHHHHHHTSCCSSCCCCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHhcCcCCCCcccchhHHHHHHhc----CCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHH
Confidence 344445554544433 34445444433 22224579999999999999999994 58999999999999999
Q ss_pred HhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCC
Q 045407 155 ENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLP 234 (382)
Q Consensus 155 e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (382)
++... .+- ..++.++++|+.++. + ...
T Consensus 131 ~~~~~-~~~--~~~~~~~~~d~~~~~-----------------~---------------------------------~~~ 157 (248)
T 2yvl_A 131 KNLKK-FNL--GKNVKFFNVDFKDAE-----------------V---------------------------------PEG 157 (248)
T ss_dssp HHHHH-TTC--CTTEEEECSCTTTSC-----------------C---------------------------------CTT
T ss_pred HHHHH-cCC--CCcEEEEEcChhhcc-----------------c---------------------------------CCC
Confidence 97532 111 147899999986643 1 135
Q ss_pred CccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 235 ARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 235 ~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.||+|++. . .+...+++.+.+.|+ |||++++-..
T Consensus 158 ~~D~v~~~------~---~~~~~~l~~~~~~L~-~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFVD------V---REPWHYLEKVHKSLM-EGAPVGFLLP 191 (248)
T ss_dssp CBSEEEEC------S---SCGGGGHHHHHHHBC-TTCEEEEEES
T ss_pred cccEEEEC------C---cCHHHHHHHHHHHcC-CCCEEEEEeC
Confidence 69999972 1 233567899999999 9999999664
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=117.27 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=78.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||+|.++..+++.+.. .+|+|+|+|++|++.|+++... .+..++.++++|+.+...
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~g~~~v~~~~~d~~~~~~----------- 140 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER----LGIENVIFVCGDGYYGVP----------- 140 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH----TTCCSEEEEESCGGGCCG-----------
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH----cCCCCeEEEECChhhccc-----------
Confidence 468999999999999999999863 6799999999999999988532 222359999999876430
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
...+||+|++.. .+.++. +.+.+.|+ |||+
T Consensus 141 ---------------------------------------~~~~fD~Iv~~~-~~~~~~---------~~~~~~Lk-pgG~ 170 (317)
T 1dl5_A 141 ---------------------------------------EFSPYDVIFVTV-GVDEVP---------ETWFTQLK-EGGR 170 (317)
T ss_dssp ---------------------------------------GGCCEEEEEECS-BBSCCC---------HHHHHHEE-EEEE
T ss_pred ---------------------------------------cCCCeEEEEEcC-CHHHHH---------HHHHHhcC-CCcE
Confidence 035699999876 444443 46788999 9999
Q ss_pred EEEeccC
Q 045407 273 FVMDLYG 279 (382)
Q Consensus 273 FVfDl~g 279 (382)
+++-+.+
T Consensus 171 lvi~~~~ 177 (317)
T 1dl5_A 171 VIVPINL 177 (317)
T ss_dssp EEEEBCB
T ss_pred EEEEECC
Confidence 9998643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.4e-12 Score=128.15 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=81.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.+. .+|+|||+|+ |++.|+++... .+ -..+|.++++|+.++.
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~-~~V~gvD~s~-~l~~A~~~~~~-~g--l~~~v~~~~~d~~~~~------------- 220 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGA-RKIYAVEAST-MAQHAEVLVKS-NN--LTDRIVVIPGKVEEVS------------- 220 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTC-SEEEEEECHH-HHHHHHHHHHH-TT--CTTTEEEEESCTTTCC-------------
T ss_pred CCEEEEecCcccHHHHHHHHcCC-CEEEEEEcHH-HHHHHHHHHHH-cC--CCCcEEEEECchhhCc-------------
Confidence 46899999999999999999764 4899999999 99999887532 11 1147999999997754
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .++||+|++- .+.|+...+++...|..+++.|+ |||++
T Consensus 221 ----~----------------------------------~~~fD~Ivs~--~~~~~~~~e~~~~~l~~~~~~Lk-pgG~l 259 (480)
T 3b3j_A 221 ----L----------------------------------PEQVDIIISE--PMGYMLFNERMLESYLHAKKYLK-PSGNM 259 (480)
T ss_dssp ----C----------------------------------SSCEEEEECC--CCHHHHTCHHHHHHHHHGGGGEE-EEEEE
T ss_pred ----c----------------------------------CCCeEEEEEe--CchHhcCcHHHHHHHHHHHHhcC-CCCEE
Confidence 2 3569999983 23333344677888889999999 99999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
++..
T Consensus 260 i~~~ 263 (480)
T 3b3j_A 260 FPTI 263 (480)
T ss_dssp ESCE
T ss_pred EEEe
Confidence 9643
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.7e-12 Score=121.96 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=79.6
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
.|.+|||+|||+|.++.++++..+..+|++||+|++|+++|+++... +. .-...||.++++|+++...
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~-~~~~~~~~rv~~~~~D~~~~l~---------- 176 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG-MSCGFSHPKLDLFCGDGFEFLK---------- 176 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT-TSGGGGCTTEEEECSCHHHHHH----------
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-hccccCCCCEEEEEChHHHHHH----------
Confidence 46789999999999999999986567899999999999999997532 10 0012589999999865430
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccCC
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSKK 269 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~p 269 (382)
. ...+||+|++-. ...+.....+ ..+|+.++++|+ |
T Consensus 177 ------~---------------------------------~~~~fD~Ii~d~--~~~~~~~~~l~t~~~l~~~~~~Lk-p 214 (314)
T 2b2c_A 177 ------N---------------------------------HKNEFDVIITDS--SDPVGPAESLFGQSYYELLRDALK-E 214 (314)
T ss_dssp ------H---------------------------------CTTCEEEEEECC--C-------------HHHHHHHHEE-E
T ss_pred ------h---------------------------------cCCCceEEEEcC--CCCCCcchhhhHHHHHHHHHhhcC-C
Confidence 0 135799999733 3333323344 689999999999 9
Q ss_pred CcEEEEec
Q 045407 270 GGIFVMDL 277 (382)
Q Consensus 270 GGiFVfDl 277 (382)
||+|+++.
T Consensus 215 gG~lv~~~ 222 (314)
T 2b2c_A 215 DGILSSQG 222 (314)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEEC
Confidence 99999986
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=115.16 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=79.2
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++..... +..++.++++|+.++.
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---g~~~v~~~~~d~~~~~------------ 175 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIADFI------------ 175 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTTCC------------
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECchhccC------------
Confidence 457999999999999999998 555689999999999999999853210 2247999999987632
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
....||+|++ .+. +....++.+++.|+ |||+
T Consensus 176 ---------------------------------------~~~~fD~Vi~------~~~---~~~~~l~~~~~~Lk-pgG~ 206 (275)
T 1yb2_A 176 ---------------------------------------SDQMYDAVIA------DIP---DPWNHVQKIASMMK-PGSV 206 (275)
T ss_dssp ---------------------------------------CSCCEEEEEE------CCS---CGGGSHHHHHHTEE-EEEE
T ss_pred ---------------------------------------cCCCccEEEE------cCc---CHHHHHHHHHHHcC-CCCE
Confidence 1356999998 223 33578899999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+++-..
T Consensus 207 l~i~~~ 212 (275)
T 1yb2_A 207 ATFYLP 212 (275)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 998553
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-12 Score=119.91 Aligned_cols=104 Identities=12% Similarity=-0.104 Sum_probs=73.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE--eccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF--HGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~--~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.++..++++ .+|+|||+|+ |+..|+++... . ...+.+|.++ ++|+++++
T Consensus 76 ~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~-~-~~~~~~v~~~~~~~D~~~l~------------ 137 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRI-T-ESYGWNIVKFKSRVDIHTLP------------ 137 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCC-C-CBTTGGGEEEECSCCTTTSC------------
T ss_pred CEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhh-h-hccCCCeEEEecccCHhHCC------------
Confidence 47999999999999999988 3699999999 65433322111 0 0011268889 89987654
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh----hHHHHHHHHHHhhccC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR----ADLVLYFKHVLHALSK 268 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r----~dL~~yFr~V~~~L~~ 268 (382)
..+||+|+|-.. ++.... ......|+.++++|+
T Consensus 138 ----------------------------------------~~~fD~V~sd~~--~~~~~~~~d~~~~l~~L~~~~r~Lk- 174 (265)
T 2oxt_A 138 ----------------------------------------VERTDVIMCDVG--ESSPKWSVESERTIKILELLEKWKV- 174 (265)
T ss_dssp ----------------------------------------CCCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----------------------------------------CCCCcEEEEeCc--ccCCccchhHHHHHHHHHHHHHHhc-
Confidence 457999999643 333221 112248899999999
Q ss_pred CCc--EEEEeccC
Q 045407 269 KGG--IFVMDLYG 279 (382)
Q Consensus 269 pGG--iFVfDl~g 279 (382)
||| .||++++.
T Consensus 175 pGG~~~fv~kv~~ 187 (265)
T 2oxt_A 175 KNPSADFVVKVLC 187 (265)
T ss_dssp HCTTCEEEEEESC
T ss_pred cCCCeEEEEEeCC
Confidence 999 99998886
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-12 Score=121.51 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc-cCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV-GADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl-~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+|||+|||||.++.++++..+..+|++||+|++|++.|+++... + ..-...++.++++|.++...
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~-~~~~~~~~rv~v~~~Da~~~l~--------- 163 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG-MAIGYSSSKLTLHVGDGFEFMK--------- 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH-HHGGGGCTTEEEEESCHHHHHH---------
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH-hhcccCCCcEEEEECcHHHHHh---------
Confidence 346789999999999999999987667899999999999999997421 1 00012489999999865320
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH--HHHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~ 268 (382)
. ...+||+|++-.. ..+..... ...+|+.++++|+
T Consensus 164 -------~---------------------------------~~~~fD~Ii~d~~--~~~~~~~~l~~~~~l~~~~~~Lk- 200 (304)
T 2o07_A 164 -------Q---------------------------------NQDAFDVIITDSS--DPMGPAESLFKESYYQLMKTALK- 200 (304)
T ss_dssp -------T---------------------------------CSSCEEEEEEECC-------------CHHHHHHHHHEE-
T ss_pred -------h---------------------------------CCCCceEEEECCC--CCCCcchhhhHHHHHHHHHhccC-
Confidence 0 1356999998332 22111111 2578999999999
Q ss_pred CCcEEEEec
Q 045407 269 KGGIFVMDL 277 (382)
Q Consensus 269 pGGiFVfDl 277 (382)
|||+||++.
T Consensus 201 pgG~lv~~~ 209 (304)
T 2o07_A 201 EDGVLCCQG 209 (304)
T ss_dssp EEEEEEEEE
T ss_pred CCeEEEEec
Confidence 999999976
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=122.64 Aligned_cols=125 Identities=16% Similarity=0.100 Sum_probs=88.2
Q ss_pred cCChhhHHHHHHHHHHh--hCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcce
Q 045407 92 QSPKGDISYLQKFFLIY--VGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRI 169 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y--~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI 169 (382)
+|..=-..|-..+.+.. ..| .+|||+|||||.||...|+.|.. +|+|||.|+ |++.|++.... .+ -..+|
T Consensus 63 ~D~~Rt~aY~~Ai~~~~~~~~~---k~VLDvG~GtGiLs~~Aa~aGA~-~V~ave~s~-~~~~a~~~~~~-n~--~~~~i 134 (376)
T 4hc4_A 63 ADRVRTDAYRLGILRNWAALRG---KTVLDVGAGTGILSIFCAQAGAR-RVYAVEASA-IWQQAREVVRF-NG--LEDRV 134 (376)
T ss_dssp HCHHHHHHHHHHHHTTHHHHTT---CEEEEETCTTSHHHHHHHHTTCS-EEEEEECST-THHHHHHHHHH-TT--CTTTE
T ss_pred CCHHHHHHHHHHHHhCHHhcCC---CEEEEeCCCccHHHHHHHHhCCC-EEEEEeChH-HHHHHHHHHHH-cC--CCceE
Confidence 44444445654444321 123 36999999999999999999974 899999996 89999876432 11 12479
Q ss_pred EEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc
Q 045407 170 SLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL 249 (382)
Q Consensus 170 ~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL 249 (382)
.++++||.++. + ..++|+|+|=... .+|
T Consensus 135 ~~i~~~~~~~~-----------------l----------------------------------pe~~DvivsE~~~-~~l 162 (376)
T 4hc4_A 135 HVLPGPVETVE-----------------L----------------------------------PEQVDAIVSEWMG-YGL 162 (376)
T ss_dssp EEEESCTTTCC-----------------C----------------------------------SSCEEEEECCCCB-TTB
T ss_pred EEEeeeeeeec-----------------C----------------------------------CccccEEEeeccc-ccc
Confidence 99999998876 3 4679999984433 334
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.....+..++....+.|+ |||++|.+.
T Consensus 163 ~~e~~l~~~l~a~~r~Lk-p~G~~iP~~ 189 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLK-EGGLLLPAS 189 (376)
T ss_dssp TTTCSHHHHHHHHHHHEE-EEEEEESCE
T ss_pred cccchhhhHHHHHHhhCC-CCceECCcc
Confidence 444566666766778888 999999864
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=110.97 Aligned_cols=123 Identities=16% Similarity=0.117 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
...++..+... ..|.+|||+|||||..+..+++.-+ ..+|+|+|+|++|++.|+++... .+ -..+|.++++|
T Consensus 58 ~~~~l~~l~~~----~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g--~~~~i~~~~gd 130 (237)
T 3c3y_A 58 AGQLMSFVLKL----VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK-AG--VEHKINFIESD 130 (237)
T ss_dssp HHHHHHHHHHH----TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-TT--CGGGEEEEESC
T ss_pred HHHHHHHHHHh----hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cC--CCCcEEEEEcC
Confidence 33455554443 1256899999999999999999743 46899999999999999987532 11 12479999999
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL 255 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL 255 (382)
..+... . +.+ .++..++||+|++-. .....
T Consensus 131 a~~~l~-------------~--l~~----------------------------~~~~~~~fD~I~~d~-------~~~~~ 160 (237)
T 3c3y_A 131 AMLALD-------------N--LLQ----------------------------GQESEGSYDFGFVDA-------DKPNY 160 (237)
T ss_dssp HHHHHH-------------H--HHH----------------------------STTCTTCEEEEEECS-------CGGGH
T ss_pred HHHHHH-------------H--HHh----------------------------ccCCCCCcCEEEECC-------chHHH
Confidence 865420 0 000 000135799998643 23467
Q ss_pred HHHHHHHHhhccCCCcEEEEec
Q 045407 256 VLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl 277 (382)
..+|+.+++.|+ |||++|+|-
T Consensus 161 ~~~l~~~~~~L~-pGG~lv~d~ 181 (237)
T 3c3y_A 161 IKYHERLMKLVK-VGGIVAYDN 181 (237)
T ss_dssp HHHHHHHHHHEE-EEEEEEEEC
T ss_pred HHHHHHHHHhcC-CCeEEEEec
Confidence 889999999999 999999973
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=101.19 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=76.9
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++. |+..+++|+|+|+ |++. .++.++++|+.++++...
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------~~~~~~~~d~~~~~~~~~-------- 79 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------VGVDFLQGDFRDELVMKA-------- 79 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------TTEEEEESCTTSHHHHHH--------
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------CcEEEEEcccccchhhhh--------
Confidence 458999999999999999998 6657899999999 7632 368899999987652100
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh--hH------HHHHHHHHHh
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR--AD------LVLYFKHVLH 264 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r--~d------L~~yFr~V~~ 264 (382)
+. . .+...+||+|++.. .+.++... +. ....++.+++
T Consensus 80 ---~~------------------~-------------~~~~~~~D~i~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (180)
T 1ej0_A 80 ---LL------------------E-------------RVGDSKVQVVMSDM-APNMSGTPAVDIPRAMYLVELALEMCRD 124 (180)
T ss_dssp ---HH------------------H-------------HHTTCCEEEEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hh------------------c-------------cCCCCceeEEEECC-CccccCCCccchHHHHHHHHHHHHHHHH
Confidence 00 0 01135799999843 33333322 11 2688999999
Q ss_pred hccCCCcEEEEeccCCC
Q 045407 265 ALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 265 ~L~~pGGiFVfDl~gg~ 281 (382)
.|+ |||++++-.+...
T Consensus 125 ~L~-~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 125 VLA-PGGSFVVKVFQGE 140 (180)
T ss_dssp HEE-EEEEEEEEEESST
T ss_pred HcC-CCcEEEEEEecCC
Confidence 999 9999999655443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6e-12 Score=119.98 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=80.3
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc-cCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV-GADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl-~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
.|.+|||+|||+|.++.++++..+..+|++||+|+.|+++|+++... + ..-...++.++++|++++..
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~-~~~~~~~~~v~~~~~D~~~~l~---------- 158 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQ-TSCGFDDPRAEIVIANGAEYVR---------- 158 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHH-HHGGGGCTTEEEEESCHHHHGG----------
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHh-hccccCCCceEEEECcHHHHHh----------
Confidence 36789999999999999999985456899999999999999997521 0 00112489999999865430
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc-cCChhHH--HHHHHHHHhhccC
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC-LHKRADL--VLYFKHVLHALSK 268 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y-L~~r~dL--~~yFr~V~~~L~~ 268 (382)
. ...+||+|++-. .+. +.....+ ..+|+.++++|+
T Consensus 159 ------~---------------------------------~~~~fD~Ii~d~--~~~~~~~~~~l~~~~~l~~~~~~Lk- 196 (296)
T 1inl_A 159 ------K---------------------------------FKNEFDVIIIDS--TDPTAGQGGHLFTEEFYQACYDALK- 196 (296)
T ss_dssp ------G---------------------------------CSSCEEEEEEEC------------CCSHHHHHHHHHHEE-
T ss_pred ------h---------------------------------CCCCceEEEEcC--CCcccCchhhhhHHHHHHHHHHhcC-
Confidence 0 135699999732 221 2222222 688999999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||+|++...
T Consensus 197 pgG~lv~~~~ 206 (296)
T 1inl_A 197 EDGVFSAETE 206 (296)
T ss_dssp EEEEEEEECC
T ss_pred CCcEEEEEcc
Confidence 9999999754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-11 Score=111.80 Aligned_cols=103 Identities=11% Similarity=0.070 Sum_probs=81.4
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..+|+. |+..+|+|||+|++||+.+++++.. ...+..+.+|.+.|....
T Consensus 79 ~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~------~~ni~~V~~d~~~p~~~~---------- 142 (233)
T 4df3_A 79 DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD------RRNIFPILGDARFPEKYR---------- 142 (233)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT------CTTEEEEESCTTCGGGGT----------
T ss_pred CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh------hcCeeEEEEeccCccccc----------
Confidence 47999999999999999987 7888999999999999999988532 246889999998876210
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....+|+|++-. .-..+....++++++.|+ |||.|
T Consensus 143 -------------------------------------~~~~~vDvVf~d~------~~~~~~~~~l~~~~r~LK-pGG~l 178 (233)
T 4df3_A 143 -------------------------------------HLVEGVDGLYADV------AQPEQAAIVVRNARFFLR-DGGYM 178 (233)
T ss_dssp -------------------------------------TTCCCEEEEEECC------CCTTHHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------cccceEEEEEEec------cCChhHHHHHHHHHHhcc-CCCEE
Confidence 1145689886532 222466788999999999 99999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
++-+
T Consensus 179 vI~i 182 (233)
T 4df3_A 179 LMAI 182 (233)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-11 Score=111.76 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=78.7
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..+++. ++..+|+|+|+|+++++.|+++... .+ -..++.++++|+.++.
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~--~~~~v~~~~~d~~~~~------------ 177 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-WG--LIERVTIKVRDISEGF------------ 177 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-TT--CGGGEEEECCCGGGCC------------
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-cC--CCCCEEEEECCHHHcc------------
Confidence 457999999999999999999 7667999999999999999998532 11 0147999999985432
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
....||+|++- + .+...+++.++++|+ |||+
T Consensus 178 ---------------------------------------~~~~~D~V~~~------~---~~~~~~l~~~~~~L~-pgG~ 208 (277)
T 1o54_A 178 ---------------------------------------DEKDVDALFLD------V---PDPWNYIDKCWEALK-GGGR 208 (277)
T ss_dssp ---------------------------------------SCCSEEEEEEC------C---SCGGGTHHHHHHHEE-EEEE
T ss_pred ---------------------------------------cCCccCEEEEC------C---cCHHHHHHHHHHHcC-CCCE
Confidence 13569999872 1 233578899999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+++-..
T Consensus 209 l~~~~~ 214 (277)
T 1o54_A 209 FATVCP 214 (277)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999553
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.3e-12 Score=119.63 Aligned_cols=105 Identities=9% Similarity=-0.151 Sum_probs=74.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE--eccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF--HGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~--~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.++..++++ .+|+|||+|+ |+..|+++... ....+.+|.++ ++|+++++
T Consensus 84 ~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~--~~~~~~~v~~~~~~~D~~~l~------------ 145 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRL--VETFGWNLITFKSKVDVTKME------------ 145 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCC--CCCTTGGGEEEECSCCGGGCC------------
T ss_pred CEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhh--hhhcCCCeEEEeccCcHhhCC------------
Confidence 47999999999999999998 3699999999 76444333211 00111268899 88986543
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh----hHHHHHHHHHHhhccC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR----ADLVLYFKHVLHALSK 268 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r----~dL~~yFr~V~~~L~~ 268 (382)
..+||+|+|-.. ++.... ......|+.+++.|+
T Consensus 146 ----------------------------------------~~~fD~Vvsd~~--~~~~~~~~d~~~~l~~L~~~~r~Lk- 182 (276)
T 2wa2_A 146 ----------------------------------------PFQADTVLCDIG--ESNPTAAVEASRTLTVLNVISRWLE- 182 (276)
T ss_dssp ----------------------------------------CCCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----------------------------------------CCCcCEEEECCC--cCCCchhhhHHHHHHHHHHHHHHhc-
Confidence 357999999643 333221 111247899999999
Q ss_pred CCc--EEEEeccCC
Q 045407 269 KGG--IFVMDLYGG 280 (382)
Q Consensus 269 pGG--iFVfDl~gg 280 (382)
||| .||++++..
T Consensus 183 pGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 183 YNQGCGFCVKVLNP 196 (276)
T ss_dssp HSTTCEEEEEESCC
T ss_pred cCCCcEEEEEeCCC
Confidence 999 999988863
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=112.01 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=78.6
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++.....+. -..++.++++|+.+..
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-~~~~v~~~~~d~~~~~------------ 166 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDLADSE------------ 166 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEEEECSCGGGCC------------
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCCcEEEEECchHhcC------------
Confidence 457999999999999999995 55568999999999999999985321010 0247999999986554
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+....||+|++- +. +...++++++++|+ |||+
T Consensus 167 --------------------------------------~~~~~~D~v~~~------~~---~~~~~l~~~~~~L~-pgG~ 198 (280)
T 1i9g_A 167 --------------------------------------LPDGSVDRAVLD------ML---APWEVLDAVSRLLV-AGGV 198 (280)
T ss_dssp --------------------------------------CCTTCEEEEEEE------SS---CGGGGHHHHHHHEE-EEEE
T ss_pred --------------------------------------CCCCceeEEEEC------Cc---CHHHHHHHHHHhCC-CCCE
Confidence 113569999972 12 23467999999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+++-..
T Consensus 199 l~~~~~ 204 (280)
T 1i9g_A 199 LMVYVA 204 (280)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999553
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=118.35 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=82.9
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC--CCCcceEEEeccCCCchhhhhcccchh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA--DGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
.|.+|||+|||+|.++.++++..+..+|+|||+|+.|+++|+++... +.. -...++.++++|+++...
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~-~~~~~~~~~~v~~~~~D~~~~l~--------- 146 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE-WHQGAFDDPRAVLVIDDARAYLE--------- 146 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHH-HHTTGGGCTTEEEEESCHHHHHH---------
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHh-hccccccCCceEEEEchHHHHHH---------
Confidence 46789999999999999999985556899999999999999997421 100 012589999999865420
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc-CChhH--HHHHHHHHHhhcc
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL-HKRAD--LVLYFKHVLHALS 267 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL-~~r~d--L~~yFr~V~~~L~ 267 (382)
. ...+||+|++-...-..+ ..... ...+|+.++++|+
T Consensus 147 -------~---------------------------------~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk 186 (314)
T 1uir_A 147 -------R---------------------------------TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN 186 (314)
T ss_dssp -------H---------------------------------CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE
T ss_pred -------h---------------------------------cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcC
Confidence 0 135799999854321100 11122 3789999999999
Q ss_pred CCCcEEEEec
Q 045407 268 KKGGIFVMDL 277 (382)
Q Consensus 268 ~pGGiFVfDl 277 (382)
|||+|++-.
T Consensus 187 -pgG~lv~~~ 195 (314)
T 1uir_A 187 -PGGVMGMQT 195 (314)
T ss_dssp -EEEEEEEEE
T ss_pred -CCcEEEEEc
Confidence 999999964
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=118.16 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=81.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.|. +|+|||+|+.||++|+++... .+- ...++.++++|+.++... .
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~-~gl-~~~~v~~i~~D~~~~l~~-~--------- 219 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVL-AGL-EQAPIRWICEDAMKFIQR-E--------- 219 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHH-HTC-TTSCEEEECSCHHHHHHH-H---------
T ss_pred CCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHH-cCC-CccceEEEECcHHHHHHH-H---------
Confidence 35799999999999999999885 799999999999999998532 111 111589999998765410 0
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE----ccchhc--ccCChhHHHHHHHHHHhhcc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA----FNYSCC--CLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a----fn~S~~--yL~~r~dL~~yFr~V~~~L~ 267 (382)
.. ...+||+|++ +..+-. -++-..++...++.+.+.|+
T Consensus 220 ---~~---------------------------------~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lk 263 (332)
T 2igt_A 220 ---ER---------------------------------RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS 263 (332)
T ss_dssp ---HH---------------------------------HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC
T ss_pred ---Hh---------------------------------cCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0246999998 332200 11223577889999999999
Q ss_pred CCCcEEEEecc
Q 045407 268 KKGGIFVMDLY 278 (382)
Q Consensus 268 ~pGGiFVfDl~ 278 (382)
|||+|++...
T Consensus 264 -pgG~lli~~~ 273 (332)
T 2igt_A 264 -PKALGLVLTA 273 (332)
T ss_dssp -TTCCEEEEEE
T ss_pred -cCcEEEEEEC
Confidence 9999887554
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=108.25 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=74.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeC-CHHHHHHHHHhccccc-cCCCC-----cceEEEeccCCCchhhhhcc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDL-DLEALEWCMENNLNKV-GADGY-----SRISLFHGNVLQPLEAKLVR 186 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDL-S~emL~~A~e~~~~kl-~~d~~-----~RI~l~~gDV~~~~~~~~~~ 186 (382)
..+|||+|||||.++..+++.|. .+|+|+|+ |++||+.|+++..... ...+. .+|.+...|..+....
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~-~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 154 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGA-DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS---- 154 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC-SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH----
T ss_pred CCeEEEecccccHHHHHHHHcCC-CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH----
Confidence 35799999999999999999885 38999999 8999999999852100 00111 2577776665443200
Q ss_pred cchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhc
Q 045407 187 YEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHAL 266 (382)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L 266 (382)
+... +...+||+|++.. . +....++...++.+.+.|
T Consensus 155 -----~~~~-----------------------------------~~~~~fD~Ii~~d-v---l~~~~~~~~ll~~l~~~L 190 (281)
T 3bzb_A 155 -----LQRC-----------------------------------TGLQRFQVVLLAD-L---LSFHQAHDALLRSVKMLL 190 (281)
T ss_dssp -----HHHH-----------------------------------HSCSSBSEEEEES-C---CSCGGGHHHHHHHHHHHB
T ss_pred -----HHhh-----------------------------------ccCCCCCEEEEeC-c---ccChHHHHHHHHHHHHHh
Confidence 0000 0135799998854 2 233467788888999988
Q ss_pred cC--C--CcEEEE
Q 045407 267 SK--K--GGIFVM 275 (382)
Q Consensus 267 ~~--p--GGiFVf 275 (382)
++ | ||++++
T Consensus 191 k~~~p~~gG~l~v 203 (281)
T 3bzb_A 191 ALPANDPTAVALV 203 (281)
T ss_dssp CCTTTCTTCEEEE
T ss_pred cccCCCCCCEEEE
Confidence 61 5 997655
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.9e-11 Score=102.96 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
+..-+..+....... +...+.+|||+|||||.++..+++.|. .+|+|||+|+.|++.|+++.. ++.+++
T Consensus 33 ~~~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~---------~~~~~~ 101 (200)
T 1ne2_A 33 DASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCG---------GVNFMV 101 (200)
T ss_dssp CHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCT---------TSEEEE
T ss_pred CHHHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhcC---------CCEEEE
Confidence 333334444444332 223356899999999999999999864 379999999999999999851 688999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
+|+.+++ ..||+|++- -.+.++.. .
T Consensus 102 ~d~~~~~-----------------------------------------------------~~~D~v~~~-~p~~~~~~-~ 126 (200)
T 1ne2_A 102 ADVSEIS-----------------------------------------------------GKYDTWIMN-PPFGSVVK-H 126 (200)
T ss_dssp CCGGGCC-----------------------------------------------------CCEEEEEEC-CCC-------
T ss_pred CcHHHCC-----------------------------------------------------CCeeEEEEC-CCchhccC-c
Confidence 9985432 469999974 34555443 3
Q ss_pred HHHHHHHHHHhhccCCCcEEEEe
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
....+++.+.+.| |++++.-
T Consensus 127 ~~~~~l~~~~~~~---g~~~~~~ 146 (200)
T 1ne2_A 127 SDRAFIDKAFETS---MWIYSIG 146 (200)
T ss_dssp -CHHHHHHHHHHE---EEEEEEE
T ss_pred hhHHHHHHHHHhc---CcEEEEE
Confidence 3457888898888 5666664
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=108.22 Aligned_cols=113 Identities=10% Similarity=0.027 Sum_probs=75.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++++ .+|+|||+++.+ . ..++.++++|++++.....+ .
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~-------~--------~~~v~~~~~D~~~~~~~~~~-------~ 81 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME-------E--------IAGVRFIRCDIFKETIFDDI-------D 81 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC-------C--------CTTCEEEECCTTSSSHHHHH-------H
T ss_pred CCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc-------c--------CCCeEEEEccccCHHHHHHH-------H
Confidence 3579999999999999999994 589999999831 1 13689999999887521110 0
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc---c----hhcccCChhHHHHHHHHHHhhc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN---Y----SCCCLHKRADLVLYFKHVLHAL 266 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn---~----S~~yL~~r~dL~~yFr~V~~~L 266 (382)
..+.. . ..++||+|+|-- . ........+.+...++.+.+.|
T Consensus 82 ~~~~~------------------~--------------~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L 129 (191)
T 3dou_A 82 RALRE------------------E--------------GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYL 129 (191)
T ss_dssp HHHHH------------------H--------------TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHhhc------------------c--------------cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 00000 0 013799999832 1 1112222234567899999999
Q ss_pred cCCCcEEEEeccCCCch
Q 045407 267 SKKGGIFVMDLYGGTSS 283 (382)
Q Consensus 267 ~~pGGiFVfDl~gg~s~ 283 (382)
+ |||.||+-++.+...
T Consensus 130 k-pGG~lv~k~~~~~~~ 145 (191)
T 3dou_A 130 R-NGGNVLLKQFQGDMT 145 (191)
T ss_dssp E-EEEEEEEEEECSTHH
T ss_pred c-CCCEEEEEEcCCCCH
Confidence 9 999999988866543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-11 Score=117.48 Aligned_cols=104 Identities=13% Similarity=-0.028 Sum_probs=73.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeC----CHHHHHHHHHhccccccCCCCcceEEEec-cCCCchhhhhcccch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDL----DLEALEWCMENNLNKVGADGYSRISLFHG-NVLQPLEAKLVRYEP 189 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDL----S~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV~~~~~~~~~~~~~ 189 (382)
.+|||+|||||.++..+++++ +|+|||+ ++.+++.+. .. ..+..+|.++++ |++.++
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~---~V~gvD~~~~~~~~~~~~~~---~~---~~~~~~v~~~~~~D~~~l~--------- 145 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLK---NVREVKGLTKGGPGHEEPIP---MS---TYGWNLVRLQSGVDVFFIP--------- 145 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTST---TEEEEEEECCCSTTSCCCCC---CC---STTGGGEEEECSCCTTTSC---------
T ss_pred CEEEEEcCCCCHHHHHHHhcC---CEEEEeccccCchhHHHHHH---hh---hcCCCCeEEEeccccccCC---------
Confidence 579999999999999999983 6999999 665552111 11 111247899998 876554
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh---cccCChhHHHHHHHHHHhhc
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC---CCLHKRADLVLYFKHVLHAL 266 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~---~yL~~r~dL~~yFr~V~~~L 266 (382)
..+||+|+|-. ++ .++.+.......|+.++++|
T Consensus 146 -------------------------------------------~~~fD~V~sd~-~~~~g~~~~d~~~~l~~L~~~~~~L 181 (305)
T 2p41_A 146 -------------------------------------------PERCDTLLCDI-GESSPNPTVEAGRTLRVLNLVENWL 181 (305)
T ss_dssp -------------------------------------------CCCCSEEEECC-CCCCSSHHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------------------------cCCCCEEEECC-ccccCcchhhHHHHHHHHHHHHHHh
Confidence 35799999932 22 22222232336889999999
Q ss_pred cCCCcEEEEeccCCC
Q 045407 267 SKKGGIFVMDLYGGT 281 (382)
Q Consensus 267 ~~pGGiFVfDl~gg~ 281 (382)
+ |||+||++++.+.
T Consensus 182 k-pGG~~v~kv~~~~ 195 (305)
T 2p41_A 182 S-NNTQFCVKVLNPY 195 (305)
T ss_dssp C-TTCEEEEEESCCC
T ss_pred C-CCCEEEEEeCCCC
Confidence 9 9999999998763
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=122.15 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCCcccccCCC------ccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhc
Q 045407 113 QPLHLQEDFCG------TALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLV 185 (382)
Q Consensus 113 ~p~~LLEl~CG------TG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~ 185 (382)
.|.+|||+||| ||..+..+++. .+..+|+|||+|+.|. . ...+|.|+++|+.++++...+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-----~--------~~~rI~fv~GDa~dlpf~~~l 282 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-----V--------DELRIRTIQGDQNDAEFLDRI 282 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-----G--------CBTTEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-----h--------cCCCcEEEEecccccchhhhh
Confidence 36789999999 76667776654 4667999999999983 1 124899999999987731100
Q ss_pred ccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhh
Q 045407 186 RYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHA 265 (382)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~ 265 (382)
.- ...+||+|+|.. + |...+...+|+.++++
T Consensus 283 -----------~~---------------------------------~d~sFDlVisdg-s----H~~~d~~~aL~el~rv 313 (419)
T 3sso_A 283 -----------AR---------------------------------RYGPFDIVIDDG-S----HINAHVRTSFAALFPH 313 (419)
T ss_dssp -----------HH---------------------------------HHCCEEEEEECS-C----CCHHHHHHHHHHHGGG
T ss_pred -----------hc---------------------------------ccCCccEEEECC-c----ccchhHHHHHHHHHHh
Confidence 00 025799999742 2 2346889999999999
Q ss_pred ccCCCcEEEE-ecc
Q 045407 266 LSKKGGIFVM-DLY 278 (382)
Q Consensus 266 L~~pGGiFVf-Dl~ 278 (382)
|+ |||+||+ |++
T Consensus 314 LK-PGGvlVi~Dl~ 326 (419)
T 3sso_A 314 VR-PGGLYVIEDMW 326 (419)
T ss_dssp EE-EEEEEEEECGG
T ss_pred cC-CCeEEEEEecc
Confidence 99 9999999 665
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=107.77 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=76.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.++ .+|+|+|+|++|++.|+++... .+..++.++++|+..+.
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~------------- 153 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLER----AGVKNVHVILGDGSKGF------------- 153 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHH----TTCCSEEEEESCGGGCC-------------
T ss_pred CCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH----cCCCCcEEEECCcccCC-------------
Confidence 45799999999999999999986 5799999999999999997532 22335899999972211
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ...+||+|++.. ++.++. ..+++.|+ |||++
T Consensus 154 ----~---------------------------------~~~~fD~Ii~~~-~~~~~~---------~~~~~~L~-pgG~l 185 (235)
T 1jg1_A 154 ----P---------------------------------PKAPYDVIIVTA-GAPKIP---------EPLIEQLK-IGGKL 185 (235)
T ss_dssp ----G---------------------------------GGCCEEEEEECS-BBSSCC---------HHHHHTEE-EEEEE
T ss_pred ----C---------------------------------CCCCccEEEECC-cHHHHH---------HHHHHhcC-CCcEE
Confidence 0 023599999875 444433 26788999 99999
Q ss_pred EEeccCC
Q 045407 274 VMDLYGG 280 (382)
Q Consensus 274 VfDl~gg 280 (382)
|+-+.++
T Consensus 186 vi~~~~~ 192 (235)
T 1jg1_A 186 IIPVGSY 192 (235)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9987643
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-10 Score=97.30 Aligned_cols=127 Identities=13% Similarity=0.217 Sum_probs=75.4
Q ss_pred CCcccccCCCccHhHHHHHHhCC--CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS--RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~--~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+|||+|||||.++..++++.+ ..+|+|+|+|+.+ . ..++.++++|+.++.. .
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------~--------~~~v~~~~~d~~~~~~---------~ 78 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------P--------IPNVYFIQGEIGKDNM---------N 78 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------C--------CTTCEEEECCTTTTSS---------C
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------C--------CCCceEEEccccchhh---------h
Confidence 35799999999999999999865 4689999999921 1 1368899999977641 0
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc----CCh----hHHHHHHHHHH
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL----HKR----ADLVLYFKHVL 263 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL----~~r----~dL~~yFr~V~ 263 (382)
.+.+....+.... ........ ..+....||+|+|.. ++.+. .+. +.....++.++
T Consensus 79 ~~~~~~~i~~~~~---~~~~~~~~-------------~~~~~~~fD~v~~~~-~~~~~g~~~~d~~~~~~~~~~~l~~~~ 141 (201)
T 2plw_A 79 NIKNINYIDNMNN---NSVDYKLK-------------EILQDKKIDIILSDA-AVPCIGNKIDDHLNSCELTLSITHFME 141 (201)
T ss_dssp CC--------------CHHHHHHH-------------HHHTTCCEEEEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccc---hhhHHHHH-------------hhcCCCcccEEEeCC-CcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 1111111000000 00000000 002235799999853 33332 111 11235889999
Q ss_pred hhccCCCcEEEEeccCCCc
Q 045407 264 HALSKKGGIFVMDLYGGTS 282 (382)
Q Consensus 264 ~~L~~pGGiFVfDl~gg~s 282 (382)
+.|+ |||.||+.++.+..
T Consensus 142 ~~Lk-pgG~lv~~~~~~~~ 159 (201)
T 2plw_A 142 QYIN-IGGTYIVKMYLGSQ 159 (201)
T ss_dssp HHEE-EEEEEEEEEECSTT
T ss_pred HHcc-CCCEEEEEEeCCCC
Confidence 9999 99999998876543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-11 Score=105.56 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=77.0
Q ss_pred CCcccccCCCccHhHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHhccccccC--CCCcceEEEeccCCCchhhhhcc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-----SRRTAVGLDLDLEALEWCMENNLNKVGA--DGYSRISLFHGNVLQPLEAKLVR 186 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-----~~~tVvGVDLS~emL~~A~e~~~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~ 186 (382)
..+|||+|||||.++..+++.. +..+|+|+|+|++|++.|+++... .+- -...++.++++|+.+.... .
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~-~-- 156 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKR-DKPELLKIDNFKIIHKNIYQVNEE-E-- 156 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHH-HCGGGGSSTTEEEEECCGGGCCHH-H--
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHH-cCccccccCCEEEEECChHhcccc-c--
Confidence 3579999999999999999986 345899999999999999988532 110 0024799999998653200 0
Q ss_pred cchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhc
Q 045407 187 YEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHAL 266 (382)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L 266 (382)
. +...+||+|++.... .. .++.+++.|
T Consensus 157 -----------~--------------------------------~~~~~fD~I~~~~~~-~~---------~~~~~~~~L 183 (227)
T 2pbf_A 157 -----------K--------------------------------KELGLFDAIHVGASA-SE---------LPEILVDLL 183 (227)
T ss_dssp -----------H--------------------------------HHHCCEEEEEECSBB-SS---------CCHHHHHHE
T ss_pred -----------C--------------------------------ccCCCcCEEEECCch-HH---------HHHHHHHhc
Confidence 0 003569999876532 22 247888999
Q ss_pred cCCCcEEEEecc
Q 045407 267 SKKGGIFVMDLY 278 (382)
Q Consensus 267 ~~pGGiFVfDl~ 278 (382)
+ |||++|+-+.
T Consensus 184 k-pgG~lv~~~~ 194 (227)
T 2pbf_A 184 A-ENGKLIIPIE 194 (227)
T ss_dssp E-EEEEEEEEEE
T ss_pred C-CCcEEEEEEc
Confidence 9 9999999775
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=106.57 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=76.0
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccC--CCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGA--DGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..+|||+|||||.++..+++. |+..+|+|+|+|+.|++.|+++... .+. .+..++.++++|+....
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~---------- 146 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPTLLSSGRVQLVVGDGRMGY---------- 146 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HCTHHHHTSSEEEEESCGGGCC----------
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-hcccccCCCcEEEEECCcccCc----------
Confidence 357999999999999999988 5656899999999999999987532 110 00237899999986433
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
. ...+||+|++... +.. .++.+++.|+ ||
T Consensus 147 -------~---------------------------------~~~~fD~i~~~~~-~~~---------~~~~~~~~Lk-pg 175 (226)
T 1i1n_A 147 -------A---------------------------------EEAPYDAIHVGAA-APV---------VPQALIDQLK-PG 175 (226)
T ss_dssp -------G---------------------------------GGCCEEEEEECSB-BSS---------CCHHHHHTEE-EE
T ss_pred -------c---------------------------------cCCCcCEEEECCc-hHH---------HHHHHHHhcC-CC
Confidence 0 0356999987653 221 2367889999 99
Q ss_pred cEEEEecc
Q 045407 271 GIFVMDLY 278 (382)
Q Consensus 271 GiFVfDl~ 278 (382)
|++|+-+.
T Consensus 176 G~lv~~~~ 183 (226)
T 1i1n_A 176 GRLILPVG 183 (226)
T ss_dssp EEEEEEES
T ss_pred cEEEEEEe
Confidence 99999764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=112.62 Aligned_cols=101 Identities=9% Similarity=0.065 Sum_probs=78.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.+...+|+|+|+|++|+++|+++... .+..++.++++|+.+++
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~----n~l~~~~~~~~d~~~~~------------- 182 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL----NKLNNVIPILADNRDVE------------- 182 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH----TTCSSEEEEESCGGGCC-------------
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCEEEEECChHHcC-------------
Confidence 3579999999999999999997656899999999999999998532 12236889999986542
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ...||+|++-.- . .+...++.+.+.|+ |||++
T Consensus 183 ----~----------------------------------~~~~D~Vi~d~p-~-------~~~~~l~~~~~~Lk-pgG~l 215 (272)
T 3a27_A 183 ----L----------------------------------KDVADRVIMGYV-H-------KTHKFLDKTFEFLK-DRGVI 215 (272)
T ss_dssp ----C----------------------------------TTCEEEEEECCC-S-------SGGGGHHHHHHHEE-EEEEE
T ss_pred ----c----------------------------------cCCceEEEECCc-c-------cHHHHHHHHHHHcC-CCCEE
Confidence 0 246899976432 1 44567888999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++-.+
T Consensus 216 ~~s~~ 220 (272)
T 3a27_A 216 HYHET 220 (272)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98555
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-10 Score=99.22 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=76.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.|.. +|+|+|+|+.|++.|+++... .+ .++.++++|+.+++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~a~~~~~~----~~-~~~~~~~~d~~~~~------------- 110 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAK-EVICVEVDKEAVDVLIENLGE----FK-GKFKVFIGDVSEFN------------- 110 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHTGG----GT-TSEEEEESCGGGCC-------------
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHHHHH----cC-CCEEEEECchHHcC-------------
Confidence 457999999999999999999763 799999999999999998632 11 27999999985533
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
..||+|++- -.+.... +.....+++.+.+.| ||++
T Consensus 111 ----------------------------------------~~~D~v~~~-~p~~~~~-~~~~~~~l~~~~~~l---~~~~ 145 (207)
T 1wy7_A 111 ----------------------------------------SRVDIVIMN-PPFGSQR-KHADRPFLLKAFEIS---DVVY 145 (207)
T ss_dssp ----------------------------------------CCCSEEEEC-CCCSSSS-TTTTHHHHHHHHHHC---SEEE
T ss_pred ----------------------------------------CCCCEEEEc-CCCcccc-CCchHHHHHHHHHhc---CcEE
Confidence 368999864 2333332 245567888888887 7888
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
++.+
T Consensus 146 ~~~~ 149 (207)
T 1wy7_A 146 SIHL 149 (207)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8774
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=113.78 Aligned_cols=138 Identities=17% Similarity=0.098 Sum_probs=92.5
Q ss_pred chHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 82 SKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
..+..|..-.-..+...+.+...+. .-....+|||+|||||..+..+++.. ...+|+|+|+|+.||+.|+++...
T Consensus 90 ~~~~~~~~G~~~~qd~~s~l~~~~l---~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~- 165 (315)
T 1ixk_A 90 TSTPEFLTGLIYIQEASSMYPPVAL---DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR- 165 (315)
T ss_dssp GGSHHHHTTSEEECCHHHHHHHHHH---CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-
T ss_pred ccChhHhcceEEEeCHHHHHHHHHh---CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH-
Confidence 3455565543333334444433332 22223579999999999999999874 336899999999999999998532
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
. +..+|.++++|+.++.. . ...||+|+
T Consensus 166 ~---g~~~v~~~~~D~~~~~~----------------~----------------------------------~~~fD~Il 192 (315)
T 1ixk_A 166 L---GVLNVILFHSSSLHIGE----------------L----------------------------------NVEFDKIL 192 (315)
T ss_dssp H---TCCSEEEESSCGGGGGG----------------G----------------------------------CCCEEEEE
T ss_pred h---CCCeEEEEECChhhccc----------------c----------------------------------cccCCEEE
Confidence 2 22368999999876551 1 34699998
Q ss_pred Ec--cchhcccCChhHH----------------HHHHHHHHhhccCCCcEEEEec
Q 045407 241 AF--NYSCCCLHKRADL----------------VLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 241 af--n~S~~yL~~r~dL----------------~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+- |.+.++++...++ ...++++++.|+ |||++|+..
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lk-pGG~lv~st 246 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYST 246 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence 73 4445555433322 588999999999 999999953
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=113.70 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=81.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc-hhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP-LEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~-~~~~~~~~~~~~~ 192 (382)
+.+|||+| |||.++..+++.++..+|+|||+|+.||+.|+++... . +..+|.++++|+.++ +
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~-~---g~~~v~~~~~D~~~~l~------------ 235 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANE-I---GYEDIEIFTFDLRKPLP------------ 235 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHH-H---TCCCEEEECCCTTSCCC------------
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-c---CCCCEEEEEChhhhhch------------
Confidence 46899999 9999999999998766899999999999999998532 1 222799999999873 2
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc-
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG- 271 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG- 271 (382)
. .....||+|++-. .+.. ..+..+++.++++|+ |||
T Consensus 236 -----~--------------------------------~~~~~fD~Vi~~~-p~~~----~~~~~~l~~~~~~Lk-pgG~ 272 (373)
T 2qm3_A 236 -----D--------------------------------YALHKFDTFITDP-PETL----EAIRAFVGRGIATLK-GPRC 272 (373)
T ss_dssp -----T--------------------------------TTSSCBSEEEECC-CSSH----HHHHHHHHHHHHTBC-STTC
T ss_pred -----h--------------------------------hccCCccEEEECC-CCch----HHHHHHHHHHHHHcc-cCCe
Confidence 0 0024699999742 1111 136899999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
++++.+..
T Consensus 273 ~~~~~~~~ 280 (373)
T 2qm3_A 273 AGYFGITR 280 (373)
T ss_dssp EEEEEECT
T ss_pred EEEEEEec
Confidence 66888775
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=101.26 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=73.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCC---------CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE-eccCCCchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR---------RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF-HGNVLQPLEAK 183 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~---------~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~-~gDV~~~~~~~ 183 (382)
..+|||+|||||.++..++++... .+|+|+|+|+.+ . ..++.++ ++|+.++....
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-------~--------~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-------P--------LEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-------C--------CTTCEEECSCCTTSHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-------c--------CCCCeEEEeccCCCHHHHH
Confidence 457999999999999999998432 589999999931 1 1257889 99987765211
Q ss_pred hcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc---chhcccCChh----HHH
Q 045407 184 LVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN---YSCCCLHKRA----DLV 256 (382)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn---~S~~yL~~r~----dL~ 256 (382)
.+ .. . +...+||+|+|.. .+..+..+.. .+.
T Consensus 88 ~~--------~~--~--------------------------------~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~ 125 (196)
T 2nyu_A 88 RI--------LE--V--------------------------------LPGRRADVILSDMAPNATGFRDLDHDRLISLCL 125 (196)
T ss_dssp HH--------HH--H--------------------------------SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHH
T ss_pred HH--------HH--h--------------------------------cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHH
Confidence 00 00 0 1124699999843 2222212211 125
Q ss_pred HHHHHHHhhccCCCcEEEEeccCCC
Q 045407 257 LYFKHVLHALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfDl~gg~ 281 (382)
..++.+++.|+ |||+||+-++.+.
T Consensus 126 ~~l~~~~~~Lk-pgG~lv~~~~~~~ 149 (196)
T 2nyu_A 126 TLLSVTPDILQ-PGGTFLCKTWAGS 149 (196)
T ss_dssp HHHHHHHHHEE-EEEEEEEEECCSG
T ss_pred HHHHHHHHHhc-CCCEEEEEecCCc
Confidence 88999999999 9999999766544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=117.85 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=83.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCc--ceEEEeccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYS--RISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~--RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.++..+|+.|. .+|+|||+|+.||++|++|... .+.. ++.++++|+.+....
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~----n~~~~~~v~~~~~D~~~~l~~---------- 278 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEA----NHLDMANHQLVVMDVFDYFKY---------- 278 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHH----TTCCCTTEEEEESCHHHHHHH----------
T ss_pred CeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH----cCCCccceEEEECCHHHHHHH----------
Confidence 4799999999999999999875 3899999999999999998632 1212 799999998664300
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh----ccc-CChhHHHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC----CCL-HKRADLVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~----~yL-~~r~dL~~yFr~V~~~L~ 267 (382)
+.. ...+||+|++---.+ .++ .-..++...++.+.+.|+
T Consensus 279 ---~~~---------------------------------~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~ 322 (385)
T 2b78_A 279 ---ARR---------------------------------HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS 322 (385)
T ss_dssp ---HHH---------------------------------TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEE
T ss_pred ---HHH---------------------------------hCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 000 024699998732221 222 233556677889999999
Q ss_pred CCCcEEEEeccCCCc
Q 045407 268 KKGGIFVMDLYGGTS 282 (382)
Q Consensus 268 ~pGGiFVfDl~gg~s 282 (382)
|||++++.....+.
T Consensus 323 -pgG~l~~~~~~~~~ 336 (385)
T 2b78_A 323 -ENGLIIASTNAANM 336 (385)
T ss_dssp -EEEEEEEEECCTTS
T ss_pred -CCcEEEEEeCCCcC
Confidence 99999998875543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=112.77 Aligned_cols=62 Identities=6% Similarity=-0.135 Sum_probs=50.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
+.+|||+|||||.++..++++.+..+|+|+|+|+.||+.|+++... .+ -..+|.++++|+.+
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~--~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ-NN--LSDLIKVVKVPQKT 127 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-TT--CTTTEEEEECCTTC
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH-cC--CCccEEEEEcchhh
Confidence 4579999999999999999885556899999999999999998532 11 12369999999866
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=108.82 Aligned_cols=112 Identities=12% Similarity=-0.027 Sum_probs=78.7
Q ss_pred CcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||..+..+++.-.. .+|+|+|+|+.||+.++++... . +..++.++++|+.++...
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~-~---g~~~v~~~~~D~~~~~~~----------- 149 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR-M---GVLNTIIINADMRKYKDY----------- 149 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH-T---TCCSEEEEESCHHHHHHH-----------
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH-h---CCCcEEEEeCChHhcchh-----------
Confidence 47999999999999999985332 5899999999999999987532 2 223799999998765410
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCCh------------hHHHHHH
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHKR------------ADLVLYF 259 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~r------------~dL~~yF 259 (382)
+. .....||+|++- |.+.+.+... ......+
T Consensus 150 ----~~-------------------------------~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l 194 (274)
T 3ajd_A 150 ----LL-------------------------------KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELI 194 (274)
T ss_dssp ----HH-------------------------------HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHH
T ss_pred ----hh-------------------------------hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHH
Confidence 00 003469999875 3344443311 3447889
Q ss_pred HHHHhhccCCCcEEEEec
Q 045407 260 KHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl 277 (382)
+++++.|+ |||++|+-.
T Consensus 195 ~~~~~~Lk-pgG~lv~st 211 (274)
T 3ajd_A 195 DIGIDLLK-KDGELVYST 211 (274)
T ss_dssp HHHHHHEE-EEEEEEEEE
T ss_pred HHHHHhCC-CCCEEEEEE
Confidence 99999999 999999954
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-11 Score=112.84 Aligned_cols=100 Identities=8% Similarity=0.009 Sum_probs=77.0
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+|||+|||+|.++.++++. . .+|++||+|++|+++|+++... +. .-...|+.++.+|.++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~-~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPH-FHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTT-HHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHh-hccccCCCeEEEEechHHHHH----------
Confidence 34678999999999999999998 4 6999999999999999986421 10 001248999999874321
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
.+||+|++-. .++ ..+|+.++++|+ ||
T Consensus 138 -------------------------------------------~~fD~Ii~d~------~dp---~~~~~~~~~~L~-pg 164 (262)
T 2cmg_A 138 -------------------------------------------KKYDLIFCLQ------EPD---IHRIDGLKRMLK-ED 164 (262)
T ss_dssp -------------------------------------------CCEEEEEESS------CCC---HHHHHHHHTTEE-EE
T ss_pred -------------------------------------------hhCCEEEECC------CCh---HHHHHHHHHhcC-CC
Confidence 5699999752 232 238999999999 99
Q ss_pred cEEEEec
Q 045407 271 GIFVMDL 277 (382)
Q Consensus 271 GiFVfDl 277 (382)
|+||+..
T Consensus 165 G~lv~~~ 171 (262)
T 2cmg_A 165 GVFISVA 171 (262)
T ss_dssp EEEEEEE
T ss_pred cEEEEEc
Confidence 9999964
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=106.20 Aligned_cols=104 Identities=9% Similarity=-0.019 Sum_probs=74.0
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..+++. |+..+|+|||+|+.||+...+.+.. ..+|.++++|++.+....
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------r~nv~~i~~Da~~~~~~~---------- 141 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------RPNIFPLLADARFPQSYK---------- 141 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------CTTEEEEECCTTCGGGTT----------
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCeEEEEcccccchhhh----------
Confidence 57999999999999999976 5567999999999997654443321 136899999998775100
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+.||+|++-. +. ........+.+.+.|+ |||.|
T Consensus 142 -------------------------------------~~~~~~D~I~~d~-a~-----~~~~~il~~~~~~~Lk-pGG~l 177 (232)
T 3id6_C 142 -------------------------------------SVVENVDVLYVDI-AQ-----PDQTDIAIYNAKFFLK-VNGDM 177 (232)
T ss_dssp -------------------------------------TTCCCEEEEEECC-CC-----TTHHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------ccccceEEEEecC-CC-----hhHHHHHHHHHHHhCC-CCeEE
Confidence 0035799998753 21 2233334456666999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+-+.
T Consensus 178 visik 182 (232)
T 3id6_C 178 LLVIK 182 (232)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99764
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=106.76 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC-CcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG-YSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~-~~RI~l~~gDV~ 177 (382)
..+.++... .+-....+|||+|||||.++..|++++. +|+|||+|+.|++.|+++... .+ ..++.++++|+.
T Consensus 15 ~i~~~i~~~-~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~----~~~~~~v~~~~~D~~ 87 (285)
T 1zq9_A 15 LIINSIIDK-AALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQG----TPVASKLQVLVGDVL 87 (285)
T ss_dssp HHHHHHHHH-TCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT----STTGGGEEEEESCTT
T ss_pred HHHHHHHHh-cCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHh----cCCCCceEEEEccee
Confidence 344444443 3333346799999999999999999985 799999999999999997521 11 147999999997
Q ss_pred Cch
Q 045407 178 QPL 180 (382)
Q Consensus 178 ~~~ 180 (382)
+++
T Consensus 88 ~~~ 90 (285)
T 1zq9_A 88 KTD 90 (285)
T ss_dssp TSC
T ss_pred ccc
Confidence 765
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-10 Score=109.54 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCC-cceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGY-SRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~-~RI~l~~gDV~~~~ 180 (382)
...|||+|||||.+++++++.+...+|+|+|+|+.||+.|+++... .+. .+|.++++|+.+++
T Consensus 218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~----~gl~~~i~~~~~D~~~~~ 281 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALA----AGVLDKIKFIQGDATQLS 281 (373)
T ss_dssp SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHH----TTCGGGCEEEECCGGGGG
T ss_pred CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH----cCCCCceEEEECChhhCC
Confidence 3469999999999999999999755799999999999999998633 121 47999999998766
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-10 Score=108.98 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC-----CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR-----RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~-----~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.++..++........+.+|||+|||||.++..+++..+. .+++|+|+|+.|++.|+.+.... + .++.+++
T Consensus 116 ~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~----g-~~~~i~~ 190 (344)
T 2f8l_A 116 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----R-QKMTLLH 190 (344)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----T-CCCEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC----C-CCceEEE
Confidence 444444443222223468999999999999999988643 57999999999999999975321 1 2678999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
+|.+.+. ...+||+|++- --|+|+...+
T Consensus 191 ~D~l~~~---------------------------------------------------~~~~fD~Ii~N-PPfg~~~~~~ 218 (344)
T 2f8l_A 191 QDGLANL---------------------------------------------------LVDPVDVVISD-LPVGYYPDDE 218 (344)
T ss_dssp SCTTSCC---------------------------------------------------CCCCEEEEEEE-CCCSEESCHH
T ss_pred CCCCCcc---------------------------------------------------ccCCccEEEEC-CCCCCcCchh
Confidence 9986543 13569998874 3455654322
Q ss_pred H--------------H-HHHHHHHHhhccCCCcEEEEec
Q 045407 254 D--------------L-VLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 254 d--------------L-~~yFr~V~~~L~~pGGiFVfDl 277 (382)
. . ...+.++.+.|+ |||++++-+
T Consensus 219 ~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk-~gG~~~~v~ 256 (344)
T 2f8l_A 219 NAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLV 256 (344)
T ss_dssp HHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred hhhhccccCCCCcchHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 1 1 368999999999 999999976
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=121.29 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=83.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+++.+++.|. .+|+|||+|+.||++|++|... .+- ...++.++++|+.++..
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~-ngl-~~~~v~~i~~D~~~~l~------------- 604 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRL-NGL-TGRAHRLIQADCLAWLR------------- 604 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHH-TTC-CSTTEEEEESCHHHHHH-------------
T ss_pred CcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH-cCC-CccceEEEecCHHHHHH-------------
Confidence 3699999999999999999886 4799999999999999998532 111 11379999999876431
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc-------ccCChhHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC-------CLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~-------yL~~r~dL~~yFr~V~~~L~ 267 (382)
. ...+||+|++---++. -+.-..+....++.+.+.|+
T Consensus 605 ---~---------------------------------~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk 648 (703)
T 3v97_A 605 ---E---------------------------------ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLR 648 (703)
T ss_dssp ---H---------------------------------CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEE
T ss_pred ---h---------------------------------cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 0 0357999987332211 12233577888999999999
Q ss_pred CCCcEEEEeccC
Q 045407 268 KKGGIFVMDLYG 279 (382)
Q Consensus 268 ~pGGiFVfDl~g 279 (382)
|||++++....
T Consensus 649 -pgG~L~~s~~~ 659 (703)
T 3v97_A 649 -AGGTIMFSNNK 659 (703)
T ss_dssp -EEEEEEEEECC
T ss_pred -CCcEEEEEECC
Confidence 99999998764
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=105.67 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=81.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|+|+|||||.+++.+++.++..+|+|+|+|+.+|+.|++|... .+- ..+|.++++|..+..
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~-~gl--~~~i~~~~~d~l~~l-------------- 79 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA-HGL--KEKIQVRLANGLAAF-------------- 79 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TTC--TTTEEEEECSGGGGC--------------
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CceEEEEECchhhhc--------------
Confidence 479999999999999999999877899999999999999998532 221 237999999985433
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCC-CccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLP-ARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
..+ +||+|+..+ ++ -.-+...+..+...|+ ++|.|
T Consensus 80 -------------------------------------~~~~~~D~IviaG--~G----g~~i~~Il~~~~~~L~-~~~~l 115 (225)
T 3kr9_A 80 -------------------------------------EETDQVSVITIAG--MG----GRLIARILEEGLGKLA-NVERL 115 (225)
T ss_dssp -------------------------------------CGGGCCCEEEEEE--EC----HHHHHHHHHHTGGGCT-TCCEE
T ss_pred -------------------------------------ccCcCCCEEEEcC--CC----hHHHHHHHHHHHHHhC-CCCEE
Confidence 122 599888643 12 1346788999999999 99999
Q ss_pred EEeccCC
Q 045407 274 VMDLYGG 280 (382)
Q Consensus 274 VfDl~gg 280 (382)
|+--..+
T Consensus 116 Vlq~~~~ 122 (225)
T 3kr9_A 116 ILQPNNR 122 (225)
T ss_dssp EEEESSC
T ss_pred EEECCCC
Confidence 9955443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-10 Score=107.33 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=79.2
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|.+|||+|||+|.|+..|+ +..+++|+|||+.|+++|+++... .+.+..+.++|+...+
T Consensus 105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~-----~g~~~~~~v~D~~~~~------------ 164 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFARE-----KDWDFTFALQDVLCAP------------ 164 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHH-----TTCEEEEEECCTTTSC------------
T ss_pred CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHh-----cCCCceEEEeecccCC------------
Confidence 47899999999999999999 446899999999999999998422 2357889999986555
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ .+++|+|+++- ++-||..... ...| .+.+.|+ ++|+
T Consensus 165 -----~----------------------------------~~~~DvvLllk-~lh~LE~q~~-~~~~-~ll~aL~-~~~v 201 (253)
T 3frh_A 165 -----P----------------------------------AEAGDLALIFK-LLPLLEREQA-GSAM-ALLQSLN-TPRM 201 (253)
T ss_dssp -----C----------------------------------CCBCSEEEEES-CHHHHHHHST-THHH-HHHHHCB-CSEE
T ss_pred -----C----------------------------------CCCcchHHHHH-HHHHhhhhch-hhHH-HHHHHhc-CCCE
Confidence 1 46799999985 5555654333 2344 8888999 9999
Q ss_pred EEE-e--ccCCCc
Q 045407 273 FVM-D--LYGGTS 282 (382)
Q Consensus 273 FVf-D--l~gg~s 282 (382)
||- + -.+|.+
T Consensus 202 vVsfPtksl~Gr~ 214 (253)
T 3frh_A 202 AVSFPTRSLGGRG 214 (253)
T ss_dssp EEEEECC------
T ss_pred EEEcChHHhcCCC
Confidence 996 7 344433
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=102.24 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=75.5
Q ss_pred CcccccCCCccHhHHHHHHhCC------CCeEEEEeCCHHHHHHHHHhccccccC--CCCcceEEEeccCCCchhhhhcc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS------RRTAVGLDLDLEALEWCMENNLNKVGA--DGYSRISLFHGNVLQPLEAKLVR 186 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~------~~tVvGVDLS~emL~~A~e~~~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~ 186 (382)
.+|||+|||||.++..|++... ..+|+|+|+|++|++.|+++... .+. -...++.++++|+.++.
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~------ 158 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT-DDRSMLDSGQLLIVEGDGRKGY------ 158 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH-HHHHHHHHTSEEEEESCGGGCC------
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHh-cCccccCCCceEEEECCcccCC------
Confidence 5799999999999999998532 24799999999999999987532 110 00237899999986532
Q ss_pred cchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhc
Q 045407 187 YEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHAL 266 (382)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L 266 (382)
. ...+||+|++... +.++. +.+++.|
T Consensus 159 -----------~---------------------------------~~~~fD~I~~~~~-~~~~~---------~~~~~~L 184 (227)
T 1r18_A 159 -----------P---------------------------------PNAPYNAIHVGAA-APDTP---------TELINQL 184 (227)
T ss_dssp -----------G---------------------------------GGCSEEEEEECSC-BSSCC---------HHHHHTE
T ss_pred -----------C---------------------------------cCCCccEEEECCc-hHHHH---------HHHHHHh
Confidence 0 0256999987653 33322 6788999
Q ss_pred cCCCcEEEEeccC
Q 045407 267 SKKGGIFVMDLYG 279 (382)
Q Consensus 267 ~~pGGiFVfDl~g 279 (382)
+ |||++|+-+..
T Consensus 185 k-pgG~lvi~~~~ 196 (227)
T 1r18_A 185 A-SGGRLIVPVGP 196 (227)
T ss_dssp E-EEEEEEEEESC
T ss_pred c-CCCEEEEEEec
Confidence 9 99999998864
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-10 Score=104.27 Aligned_cols=106 Identities=15% Similarity=0.057 Sum_probs=82.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|+|+|||||.+++.+++.|+..+|+|+|+|+.||+.|++|... .+- ..+|.+.++|..++..
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~-~gl--~~~I~~~~gD~l~~~~------------- 86 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE-HGL--TSKIDVRLANGLSAFE------------- 86 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH-TTC--TTTEEEEECSGGGGCC-------------
T ss_pred CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECchhhccc-------------
Confidence 479999999999999999999877899999999999999998532 221 2479999999876540
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
+..+||+|+..+ ++ -.-+...+..+...|+ ++|.||
T Consensus 87 -------------------------------------~~~~~D~IviaG--mG----g~lI~~IL~~~~~~l~-~~~~lI 122 (230)
T 3lec_A 87 -------------------------------------EADNIDTITICG--MG----GRLIADILNNDIDKLQ-HVKTLV 122 (230)
T ss_dssp -------------------------------------GGGCCCEEEEEE--EC----HHHHHHHHHHTGGGGT-TCCEEE
T ss_pred -------------------------------------cccccCEEEEeC--Cc----hHHHHHHHHHHHHHhC-cCCEEE
Confidence 012699987643 22 1457778888999998 999999
Q ss_pred EeccCC
Q 045407 275 MDLYGG 280 (382)
Q Consensus 275 fDl~gg 280 (382)
+-=+.+
T Consensus 123 lqp~~~ 128 (230)
T 3lec_A 123 LQPNNR 128 (230)
T ss_dssp EEESSC
T ss_pred EECCCC
Confidence 955444
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=110.33 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=84.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|..|||+|||+|.||..|+...+..+++|+|+|+.||+.++++... .+.+..+.++|+....
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~-----~g~~~~~~v~D~~~~~------------- 194 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTR-----LNVPHRTNVADLLEDR------------- 194 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHH-----TTCCEEEEECCTTTSC-------------
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh-----cCCCceEEEeeecccC-------------
Confidence 8899999999999999999998889999999999999999998522 2346788888876544
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .+++|+|+++- ++-||.+... ...| .++++|+ ++|+|
T Consensus 195 ----p----------------------------------~~~~DvaL~lk-ti~~Le~q~k-g~g~-~ll~aL~-~~~vv 232 (281)
T 3lcv_B 195 ----L----------------------------------DEPADVTLLLK-TLPCLETQQR-GSGW-EVIDIVN-SPNIV 232 (281)
T ss_dssp ----C----------------------------------CSCCSEEEETT-CHHHHHHHST-THHH-HHHHHSS-CSEEE
T ss_pred ----C----------------------------------CCCcchHHHHH-HHHHhhhhhh-HHHH-HHHHHhC-CCCEE
Confidence 1 56799999986 6666654433 3445 8999999 99999
Q ss_pred EE-ec--cCCCc
Q 045407 274 VM-DL--YGGTS 282 (382)
Q Consensus 274 Vf-Dl--~gg~s 282 (382)
|- |. .+|.+
T Consensus 233 VSfp~ksl~Grs 244 (281)
T 3lcv_B 233 VTFPTKSLGQRS 244 (281)
T ss_dssp EEEECC------
T ss_pred EeccchhhcCCC
Confidence 97 87 56654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-10 Score=108.34 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=81.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCc-ceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYS-RISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~-RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++.|. .+|+|+|+|+.||++|+++... .+-. ++.++++|+.+.... .
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~-~~v~~vD~s~~~l~~a~~n~~~----n~~~~~v~~~~~d~~~~~~~-~-------- 283 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKL----NGVEDRMKFIVGSAFEEMEK-L-------- 283 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHH----TTCGGGEEEEESCHHHHHHH-H--------
T ss_pred CCeEEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH----cCCCccceEEECCHHHHHHH-H--------
Confidence 35799999999999999999874 4899999999999999998632 1212 799999998665310 0
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc-----ccCChhHHHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC-----CLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~-----yL~~r~dL~~yFr~V~~~L~ 267 (382)
.. ...+||+|++---.+. .+.-..+....++.+.+.|+
T Consensus 284 ----~~---------------------------------~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 326 (396)
T 2as0_A 284 ----QK---------------------------------KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK 326 (396)
T ss_dssp ----HH---------------------------------TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE
T ss_pred ----Hh---------------------------------hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0246999987321110 01111567788999999999
Q ss_pred CCCcEEEEeccCCC
Q 045407 268 KKGGIFVMDLYGGT 281 (382)
Q Consensus 268 ~pGGiFVfDl~gg~ 281 (382)
|||++++-....+
T Consensus 327 -pgG~lv~~~~~~~ 339 (396)
T 2as0_A 327 -DGGILVTCSCSQH 339 (396)
T ss_dssp -EEEEEEEEECCTT
T ss_pred -CCcEEEEEECCCC
Confidence 9999888555433
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-10 Score=104.11 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=83.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|+|+|||||.+++.+++.++..+|+|+|+|+.+|+.|++|... .+- ..+|.+.++|..++..
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~-~gl--~~~I~v~~gD~l~~~~------------- 86 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS-SGL--TEQIDVRKGNGLAVIE------------- 86 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TTC--TTTEEEEECSGGGGCC-------------
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CceEEEEecchhhccC-------------
Confidence 479999999999999999999867899999999999999998532 111 2479999999866540
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
...+||+|+..+ ++ -+-+...+..+...|+ ++|.||
T Consensus 87 -------------------------------------~~~~~D~Iviag--mG----g~lI~~IL~~~~~~L~-~~~~lI 122 (244)
T 3gnl_A 87 -------------------------------------KKDAIDTIVIAG--MG----GTLIRTILEEGAAKLA-GVTKLI 122 (244)
T ss_dssp -------------------------------------GGGCCCEEEEEE--EC----HHHHHHHHHHTGGGGT-TCCEEE
T ss_pred -------------------------------------ccccccEEEEeC--Cc----hHHHHHHHHHHHHHhC-CCCEEE
Confidence 012599988632 22 1457788889999998 899999
Q ss_pred EeccCCCch
Q 045407 275 MDLYGGTSS 283 (382)
Q Consensus 275 fDl~gg~s~ 283 (382)
+-=..+...
T Consensus 123 lq~~~~~~~ 131 (244)
T 3gnl_A 123 LQPNIAAWQ 131 (244)
T ss_dssp EEESSCHHH
T ss_pred EEcCCChHH
Confidence 965544433
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-10 Score=109.38 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=84.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCC-c-ceEEEeccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGY-S-RISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~-~-RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.++..+++.|. ..|+|||+|+.||++|+++... .+. . ++.++++|+.++... .
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~-~~V~~vD~s~~al~~a~~n~~~----ngl~~~~v~~~~~D~~~~~~~-~-------- 287 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVEL----NKLDLSKAEFVRDDVFKLLRT-Y-------- 287 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHH----TTCCGGGEEEEESCHHHHHHH-H--------
T ss_pred CeEEEeeccCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH----cCCCccceEEEECCHHHHHHH-H--------
Confidence 4799999999999999999874 4899999999999999998532 121 2 799999998665310 0
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh-----cccCChhHHHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC-----CCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~-----~yL~~r~dL~~yFr~V~~~L~ 267 (382)
.. ...+||+|++--=.+ ....-...+...+..+.+.|+
T Consensus 288 ----~~---------------------------------~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 330 (396)
T 3c0k_A 288 ----RD---------------------------------RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN 330 (396)
T ss_dssp ----HH---------------------------------TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE
T ss_pred ----Hh---------------------------------cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC
Confidence 00 024689988732111 011222577889999999999
Q ss_pred CCCcEEEEeccCCCc
Q 045407 268 KKGGIFVMDLYGGTS 282 (382)
Q Consensus 268 ~pGGiFVfDl~gg~s 282 (382)
|||++++-.+.++.
T Consensus 331 -pgG~l~~~~~~~~~ 344 (396)
T 3c0k_A 331 -EGGILLTFSCSGLM 344 (396)
T ss_dssp -EEEEEEEEECCTTC
T ss_pred -CCcEEEEEeCCCcC
Confidence 99999997765543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-09 Score=106.94 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=81.1
Q ss_pred CcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||+|..+..+++.-.. .+|+|+|+|+.+|+.++++... . +..+|.++++|+.++..
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~-~---g~~~v~~~~~D~~~~~~------------ 324 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR-M---GIKIVKPLVKDARKAPE------------ 324 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-T---TCCSEEEECSCTTCCSS------------
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-c---CCCcEEEEEcChhhcch------------
Confidence 47999999999999999987443 5899999999999999988532 2 22468999999876540
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCChhHH----------------
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHKRADL---------------- 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~r~dL---------------- 255 (382)
.+....||+|++- |.+.+.++...++
T Consensus 325 ------------------------------------~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q 368 (450)
T 2yxl_A 325 ------------------------------------IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQ 368 (450)
T ss_dssp ------------------------------------SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHH
T ss_pred ------------------------------------hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHH
Confidence 0112569999862 3344444433332
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 045407 256 VLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfD 276 (382)
...++++++.|+ |||++|+-
T Consensus 369 ~~iL~~a~~~Lk-pGG~lvy~ 388 (450)
T 2yxl_A 369 RELLESAARLVK-PGGRLLYT 388 (450)
T ss_dssp HHHHHHHHTTEE-EEEEEEEE
T ss_pred HHHHHHHHHhcC-CCcEEEEE
Confidence 678999999999 99999984
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-10 Score=111.14 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=74.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+|+.+|+.|. .|+|||+|+.||++|++|... .+ ....+.++|+.++..
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~-ng----~~~~~~~~D~~~~l~------------- 275 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALR-LG----LRVDIRHGEALPTLR------------- 275 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-HT----CCCEEEESCHHHHHH-------------
T ss_pred CeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHH-hC----CCCcEEEccHHHHHH-------------
Confidence 4799999999999999999986 499999999999999998532 11 123466888865431
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC-------hhHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK-------RADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~-------r~dL~~yFr~V~~~L~ 267 (382)
. + .+.||+|++--- ++-.+ ..+....++.+.+.|+
T Consensus 276 ---~--------------------------------~-~~~fD~Ii~dpP--~f~~~~~~~~~~~~~~~~ll~~a~~~Lk 317 (393)
T 4dmg_A 276 ---G--------------------------------L-EGPFHHVLLDPP--TLVKRPEELPAMKRHLVDLVREALRLLA 317 (393)
T ss_dssp ---T--------------------------------C-CCCEEEEEECCC--CCCSSGGGHHHHHHHHHHHHHHHHHTEE
T ss_pred ---H--------------------------------h-cCCCCEEEECCC--cCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 1 233999986321 11111 2355678889999999
Q ss_pred CCCcEEEE-ecc
Q 045407 268 KKGGIFVM-DLY 278 (382)
Q Consensus 268 ~pGGiFVf-Dl~ 278 (382)
|||++++ .+.
T Consensus 318 -pGG~Lv~~s~s 328 (393)
T 4dmg_A 318 -EEGFLWLSSCS 328 (393)
T ss_dssp -EEEEEEEEECC
T ss_pred -CCCEEEEEECC
Confidence 9999996 443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=107.36 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=81.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.+ .+|+|+|+|+.||++|+++... .+...+.++++|+.++... .
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~----n~~~~~~~~~~d~~~~~~~-~--------- 273 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARL----NGLGNVRVLEANAFDLLRR-L--------- 273 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHH----TTCTTEEEEESCHHHHHHH-H---------
T ss_pred CCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH----cCCCCceEEECCHHHHHHH-H---------
Confidence 3579999999999999999984 4799999999999999998532 1222489999998665410 0
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc-----ccCChhHHHHHHHHHHhhccC
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC-----CLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~-----yL~~r~dL~~yFr~V~~~L~~ 268 (382)
.. ...+||+|++---.+. ...-.......++.+.+.|+
T Consensus 274 ---~~---------------------------------~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk- 316 (382)
T 1wxx_A 274 ---EK---------------------------------EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK- 316 (382)
T ss_dssp ---HH---------------------------------TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-
T ss_pred ---Hh---------------------------------cCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-
Confidence 00 0246899987211100 00112566788999999999
Q ss_pred CCcEEEEeccCCCc
Q 045407 269 KGGIFVMDLYGGTS 282 (382)
Q Consensus 269 pGGiFVfDl~gg~s 282 (382)
|||++++-....+.
T Consensus 317 pgG~l~~~~~~~~~ 330 (382)
T 1wxx_A 317 EGGILATASCSHHM 330 (382)
T ss_dssp EEEEEEEEECCTTS
T ss_pred CCCEEEEEECCCCC
Confidence 99999997665443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.9e-09 Score=95.95 Aligned_cols=75 Identities=9% Similarity=0.088 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
+-..+.++... .+-....+|||+|||||.++..|++++ .+|+|||+|+.|++.|+++... ..++.++++|+
T Consensus 15 d~~~~~~i~~~-~~~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~------~~~v~~~~~D~ 85 (244)
T 1qam_A 15 SKHNIDKIMTN-IRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDI 85 (244)
T ss_dssp CHHHHHHHHTT-CCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCG
T ss_pred CHHHHHHHHHh-CCCCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc------CCCeEEEEChH
Confidence 33445555543 333334679999999999999999998 4799999999999999998521 24799999999
Q ss_pred CCch
Q 045407 177 LQPL 180 (382)
Q Consensus 177 ~~~~ 180 (382)
.+++
T Consensus 86 ~~~~ 89 (244)
T 1qam_A 86 LQFK 89 (244)
T ss_dssp GGCC
T ss_pred HhCC
Confidence 7765
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-09 Score=101.04 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=71.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++.. ++.+ .+|+|+|+|+.|+++|++|... .+- ..++.++++|+.++.
T Consensus 197 ~~VLDlg~G~G~~~l~-a~~~--~~V~~vD~s~~ai~~a~~n~~~-n~l--~~~v~~~~~D~~~~~-------------- 256 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CKNA--KKIYAIDINPHAIELLKKNIKL-NKL--EHKIIPILSDVREVD-------------- 256 (336)
T ss_dssp CEEEETTCTTSHHHHH-TTTS--SEEEEEESCHHHHHHHHHHHHH-TTC--TTTEEEEESCGGGCC--------------
T ss_pred CEEEEccCccCHHHHh-ccCC--CEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECChHHhc--------------
Confidence 4799999999999999 8833 5899999999999999998532 111 137999999985321
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
..||+|++---.+ ...+++.+.+.|+ |||+++
T Consensus 257 ---------------------------------------~~fD~Vi~dpP~~--------~~~~l~~~~~~L~-~gG~l~ 288 (336)
T 2yx1_A 257 ---------------------------------------VKGNRVIMNLPKF--------AHKFIDKALDIVE-EGGVIH 288 (336)
T ss_dssp ---------------------------------------CCEEEEEECCTTT--------GGGGHHHHHHHEE-EEEEEE
T ss_pred ---------------------------------------CCCcEEEECCcHh--------HHHHHHHHHHHcC-CCCEEE
Confidence 4689998731111 1267888999999 999988
Q ss_pred Ee
Q 045407 275 MD 276 (382)
Q Consensus 275 fD 276 (382)
+-
T Consensus 289 ~~ 290 (336)
T 2yx1_A 289 YY 290 (336)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=101.67 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=47.6
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
...+|||+|||||.++..|++++. +|+|||+|+.|++.|+++... .+..++.++++|+.+++
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~----~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLY----EGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHH----TTCCCEEC----CCSSC
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHH----cCCCceEEEECchhhCC
Confidence 346799999999999999999874 799999999999999987521 12247999999997665
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.92 E-value=6e-09 Score=98.18 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|-..+.++... ++-....+|||+|||||.++..|++++ .+|+|||+|++|++.|+++... ..++.++++|+
T Consensus 14 d~~i~~~iv~~-~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~ 84 (255)
T 3tqs_A 14 DSFVLQKIVSA-IHPQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDA 84 (255)
T ss_dssp CHHHHHHHHHH-HCCCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCT
T ss_pred CHHHHHHHHHh-cCCCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcch
Confidence 33444444443 333334579999999999999999998 4799999999999999998521 35899999999
Q ss_pred CCch
Q 045407 177 LQPL 180 (382)
Q Consensus 177 ~~~~ 180 (382)
.+++
T Consensus 85 ~~~~ 88 (255)
T 3tqs_A 85 LQFD 88 (255)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 9887
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=106.94 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=81.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|..+..+++.++..+|+|+|+|+.+|+.++++... . +.++.++++|+.++..
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~-~----g~~~~~~~~D~~~~~~------------ 309 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR-L----GMKATVKQGDGRYPSQ------------ 309 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH-T----TCCCEEEECCTTCTHH------------
T ss_pred cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHH-c----CCCeEEEeCchhhchh------------
Confidence 3579999999999999999998767899999999999999998532 1 1357899999887651
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCCh---------hHH-------
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHKR---------ADL------- 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~r---------~dL------- 255 (382)
. +....||+|++- |.+.+.+... +++
T Consensus 310 ----~--------------------------------~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q 353 (429)
T 1sqg_A 310 ----W--------------------------------CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353 (429)
T ss_dssp ----H--------------------------------HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHH
T ss_pred ----h--------------------------------cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHH
Confidence 0 113569999851 2233333322 233
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 045407 256 VLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfD 276 (382)
...++++++.|+ |||++|+-
T Consensus 354 ~~~L~~a~~~Lk-pGG~lvys 373 (429)
T 1sqg_A 354 SEILDAIWPHLK-TGGTLVYA 373 (429)
T ss_dssp HHHHHHHGGGEE-EEEEEEEE
T ss_pred HHHHHHHHHhcC-CCCEEEEE
Confidence 578999999999 99999994
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-09 Score=103.44 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCC--------------------------------------CeEEEEeCCHHHHHHHHH
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR--------------------------------------RTAVGLDLDLEALEWCME 155 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~--------------------------------------~tVvGVDLS~emL~~A~e 155 (382)
...|||+|||||.++++.|..+.+ .+|+|+|+|+.||+.|++
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 357999999999999999988643 469999999999999999
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
|... .+- ..+|.|.++|+.++. . ..+
T Consensus 276 Na~~-~gl--~~~i~~~~~D~~~l~-----------------~----------------------------------~~~ 301 (385)
T 3ldu_A 276 NAEI-AGV--DEYIEFNVGDATQFK-----------------S----------------------------------EDE 301 (385)
T ss_dssp HHHH-HTC--GGGEEEEECCGGGCC-----------------C----------------------------------SCB
T ss_pred HHHH-cCC--CCceEEEECChhhcC-----------------c----------------------------------CCC
Confidence 8643 111 137999999987655 1 346
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
||+|++--=..-.+.+.+++...|+.+.+.|+
T Consensus 302 ~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk 333 (385)
T 3ldu_A 302 FGFIITNPPYGERLEDKDSVKQLYKELGYAFR 333 (385)
T ss_dssp SCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence 89998733211234456788888888888887
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=109.73 Aligned_cols=108 Identities=10% Similarity=-0.002 Sum_probs=78.6
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||..|+.+|+.-. ..+|+|+|+|+.||+.++++... . +.. |.++++|++++.. .
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r-~---G~~-v~~~~~Da~~l~~--~-------- 166 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER-W---GAP-LAVTQAPPRALAE--A-------- 166 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-H---CCC-CEEECSCHHHHHH--H--------
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-c---CCe-EEEEECCHHHhhh--h--------
Confidence 35799999999999999998743 35899999999999999998532 2 223 8899999876541 0
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccchhcccCC---------hhHH------
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNYSCCCLHK---------RADL------ 255 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~S~~yL~~---------r~dL------ 255 (382)
+ ...||+|++ -|.+.+.+.. .+++
T Consensus 167 -----~----------------------------------~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~ 207 (464)
T 3m6w_A 167 -----F----------------------------------GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEV 207 (464)
T ss_dssp -----H----------------------------------CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHH
T ss_pred -----c----------------------------------cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHH
Confidence 1 356899984 1222233222 2222
Q ss_pred -HHHHHHHHhhccCCCcEEEEe
Q 045407 256 -VLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 256 -~~yFr~V~~~L~~pGGiFVfD 276 (382)
...++++++.|+ |||++|+-
T Consensus 208 Q~~iL~~a~~~Lk-pGG~Lvys 228 (464)
T 3m6w_A 208 QKALLAQASRLLG-PGGVLVYS 228 (464)
T ss_dssp HHHHHHHHHTTEE-EEEEEEEE
T ss_pred HHHHHHHHHHhcC-CCcEEEEE
Confidence 778999999999 99999983
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.3e-10 Score=95.63 Aligned_cols=86 Identities=10% Similarity=-0.024 Sum_probs=65.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+||+++||+ +++|+|+.||+.|+++.. .++.++++|+.+++.
T Consensus 14 ~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~--------~~~~~~~~d~~~~~~------------- 56 (176)
T 2ld4_A 14 QFVAVVWDKS----------------SPVEALKGLVDKLQALTG--------NEGRVSVENIKQLLQ------------- 56 (176)
T ss_dssp SEEEEEECTT----------------SCHHHHHHHHHHHHHHTT--------TTSEEEEEEGGGGGG-------------
T ss_pred CEEEEecCCc----------------eeeeCCHHHHHHHHHhcc--------cCcEEEEechhcCcc-------------
Confidence 4678888885 249999999999999852 148899999977651
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
..+....||+|+|.+ ++.|+. .++...|++++++|+ |||+|+
T Consensus 57 ----------------------------------~~~~~~~fD~V~~~~-~l~~~~--~~~~~~l~~~~r~Lk-pgG~l~ 98 (176)
T 2ld4_A 57 ----------------------------------SAHKESSFDIILSGL-VPGSTT--LHSAEILAEIARILR-PGGCLF 98 (176)
T ss_dssp ----------------------------------GCCCSSCEEEEEECC-STTCCC--CCCHHHHHHHHHHEE-EEEEEE
T ss_pred ----------------------------------ccCCCCCEeEEEECC-hhhhcc--cCHHHHHHHHHHHCC-CCEEEE
Confidence 001246799999865 677761 245789999999999 999999
Q ss_pred E
Q 045407 275 M 275 (382)
Q Consensus 275 f 275 (382)
+
T Consensus 99 ~ 99 (176)
T 2ld4_A 99 L 99 (176)
T ss_dssp E
T ss_pred E
Confidence 9
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-09 Score=109.74 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=80.3
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||..|+.+|+.- ....|+|+|+|+.||+.++++... .+ ..+|.++++|++++..
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r-~g---~~nv~~~~~D~~~~~~----------- 182 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR-CG---ISNVALTHFDGRVFGA----------- 182 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH-HT---CCSEEEECCCSTTHHH-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cC---CCcEEEEeCCHHHhhh-----------
Confidence 3579999999999999999873 346899999999999999998532 22 2368999999987651
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCC---------hhH-------
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHK---------RAD------- 254 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~---------r~d------- 254 (382)
. ....||+|++- |...+.+.. .++
T Consensus 183 -----~---------------------------------~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~ 224 (479)
T 2frx_A 183 -----A---------------------------------VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAAT 224 (479)
T ss_dssp -----H---------------------------------STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHH
T ss_pred -----h---------------------------------ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHH
Confidence 0 03569999872 222232221 111
Q ss_pred HHHHHHHHHhhccCCCcEEEEec
Q 045407 255 LVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVfDl 277 (382)
....++++++.|+ |||++|+..
T Consensus 225 q~~iL~~a~~~Lk-pGG~LvysT 246 (479)
T 2frx_A 225 QRELIDSAFHALR-PGGTLVYST 246 (479)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEE
T ss_pred HHHHHHHHHHhcC-CCCEEEEec
Confidence 2467999999999 999999953
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.3e-09 Score=102.77 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=77.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCC--------------------------------------CeEEEEeCCHHHHHHHHH
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR--------------------------------------RTAVGLDLDLEALEWCME 155 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~--------------------------------------~tVvGVDLS~emL~~A~e 155 (382)
...|+|.|||||.++++.|..+.+ .+|+|+|+|+.||+.|++
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~ 281 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence 457999999999999999987754 469999999999999999
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
|... .+- ..+|.++++|+.++. . ...
T Consensus 282 Na~~-~gl--~~~I~~~~~D~~~~~-----------------~----------------------------------~~~ 307 (393)
T 3k0b_A 282 NAVE-AGL--GDLITFRQLQVADFQ-----------------T----------------------------------EDE 307 (393)
T ss_dssp HHHH-TTC--TTCSEEEECCGGGCC-----------------C----------------------------------CCC
T ss_pred HHHH-cCC--CCceEEEECChHhCC-----------------C----------------------------------CCC
Confidence 8643 111 136999999997665 1 346
Q ss_pred ccEEEEcc-chhcccCChhHHHHHHHHHHhhccCC--CcEEEE
Q 045407 236 RDIICAFN-YSCCCLHKRADLVLYFKHVLHALSKK--GGIFVM 275 (382)
Q Consensus 236 fDiV~afn-~S~~yL~~r~dL~~yFr~V~~~L~~p--GGiFVf 275 (382)
||+|++-= |.. -+.+.+++...++.+.+.|+ + ||.+.+
T Consensus 308 fD~Iv~NPPYg~-rl~~~~~l~~ly~~lg~~lk-~~~g~~~~i 348 (393)
T 3k0b_A 308 YGVVVANPPYGE-RLEDEEAVRQLYREMGIVYK-RMPTWSVYV 348 (393)
T ss_dssp SCEEEECCCCCC-SHHHHHHHHHHHHHHHHHHH-TCTTCEEEE
T ss_pred CCEEEECCCCcc-ccCCchhHHHHHHHHHHHHh-cCCCCEEEE
Confidence 89888631 111 23455678888888888877 4 554444
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-09 Score=103.69 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
|..-+.++.+.+ ....+.+|||+|||||.++..++++- ...+++|+|+|+.|++.| .++.++
T Consensus 24 P~~l~~~~~~~~----~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~ 86 (421)
T 2ih2_A 24 PPEVVDFMVSLA----EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGI 86 (421)
T ss_dssp CHHHHHHHHHHC----CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEE
T ss_pred CHHHHHHHHHhh----ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEE
Confidence 444445544433 22234589999999999999999863 346899999999999655 268899
Q ss_pred eccCCCch
Q 045407 173 HGNVLQPL 180 (382)
Q Consensus 173 ~gDV~~~~ 180 (382)
++|++++.
T Consensus 87 ~~D~~~~~ 94 (421)
T 2ih2_A 87 LADFLLWE 94 (421)
T ss_dssp ESCGGGCC
T ss_pred eCChhhcC
Confidence 99986543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.1e-09 Score=103.85 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=49.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..+++.+. +|+|||+|++|++.|+++... .+.. +.++++|+.++.
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~----ngl~-v~~~~~d~~~~~ 350 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEI----NNVD-AEFEVASDREVS 350 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH----HTCC-EEEEECCTTTCC
T ss_pred CEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHH----cCCc-EEEEECChHHcC
Confidence 4799999999999999999874 799999999999999998532 1223 899999987654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-09 Score=101.51 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=51.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|||+|||+|.+|+..|++|. .+|+++|+|+.+++++++|... .+ -..+|.++++|.+++.
T Consensus 127 ~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~-N~--v~~~v~~~~~D~~~~~ 188 (278)
T 3k6r_A 127 ELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHL-NK--VEDRMSAYNMDNRDFP 188 (278)
T ss_dssp CEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHH-TT--CTTTEEEECSCTTTCC
T ss_pred CEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHH-cC--CCCcEEEEeCcHHHhc
Confidence 4699999999999999999986 4899999999999999998533 11 1247999999998765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-08 Score=99.62 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=78.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCC--------------------------------------CeEEEEeCCHHHHHHHHH
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR--------------------------------------RTAVGLDLDLEALEWCME 155 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~--------------------------------------~tVvGVDLS~emL~~A~e 155 (382)
...|+|.|||||.++++.|..+.+ .+|+|+|+|+.||+.|++
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 357999999999999999987754 469999999999999999
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
|... .+- ..+|.++++|+.++. . ...
T Consensus 275 Na~~-~gl--~~~I~~~~~D~~~l~-----------------~----------------------------------~~~ 300 (384)
T 3ldg_A 275 NARE-VGL--EDVVKLKQMRLQDFK-----------------T----------------------------------NKI 300 (384)
T ss_dssp HHHH-TTC--TTTEEEEECCGGGCC-----------------C----------------------------------CCC
T ss_pred HHHH-cCC--CCceEEEECChHHCC-----------------c----------------------------------cCC
Confidence 8643 111 236999999997765 1 246
Q ss_pred ccEEEEcc-chhcccCChhHHHHHHHHHHhhccCC--CcEEEE
Q 045407 236 RDIICAFN-YSCCCLHKRADLVLYFKHVLHALSKK--GGIFVM 275 (382)
Q Consensus 236 fDiV~afn-~S~~yL~~r~dL~~yFr~V~~~L~~p--GGiFVf 275 (382)
||+|++-= |... +.+.+++...++.+.+.|+ + ||...+
T Consensus 301 fD~Iv~NPPYG~r-l~~~~~l~~ly~~lg~~lk-~~~g~~~~i 341 (384)
T 3ldg_A 301 NGVLISNPPYGER-LLDDKAVDILYNEMGETFA-PLKTWSQFI 341 (384)
T ss_dssp SCEEEECCCCTTT-TSCHHHHHHHHHHHHHHHT-TCTTSEEEE
T ss_pred cCEEEECCchhhc-cCCHHHHHHHHHHHHHHHh-hCCCcEEEE
Confidence 89888621 2222 4566889999999888887 4 554443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-10 Score=103.54 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=50.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|||+|||||.++..|++++ .+|+|||+|++|++.|+++.. ...++.++++|+++++
T Consensus 30 ~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~------~~~~v~~~~~D~~~~~ 88 (245)
T 1yub_A 30 TDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK------LNTRVTLIHQDILQFQ 88 (245)
T ss_dssp SEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT------TCSEEEECCSCCTTTT
T ss_pred CCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc------cCCceEEEECChhhcC
Confidence 4579999999999999999998 479999999999998887642 2358999999998766
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=95.71 Aligned_cols=73 Identities=14% Similarity=0.010 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|-..+.++... .+-... +|||+|||||.++..+++++. +|+|||+|++|++.++++.. ..++.++++|+
T Consensus 32 d~~i~~~Iv~~-~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~-------~~~v~vi~~D~ 100 (271)
T 3fut_A 32 SEAHLRRIVEA-ARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLS-------GLPVRLVFQDA 100 (271)
T ss_dssp CHHHHHHHHHH-HCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTT-------TSSEEEEESCG
T ss_pred CHHHHHHHHHh-cCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcC-------CCCEEEEECCh
Confidence 34455555554 333334 899999999999999999984 69999999999999999852 14799999999
Q ss_pred CCch
Q 045407 177 LQPL 180 (382)
Q Consensus 177 ~~~~ 180 (382)
++++
T Consensus 101 l~~~ 104 (271)
T 3fut_A 101 LLYP 104 (271)
T ss_dssp GGSC
T ss_pred hhCC
Confidence 8776
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-09 Score=106.42 Aligned_cols=108 Identities=11% Similarity=-0.031 Sum_probs=79.8
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||..|+.+|+.- ...+|+|+|+|+.+|+.++++... ++ ..+|.++++|.+++.. .
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r-~g---~~nv~v~~~Da~~l~~--~-------- 171 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER-WG---VSNAIVTNHAPAELVP--H-------- 171 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH-HT---CSSEEEECCCHHHHHH--H--------
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-cC---CCceEEEeCCHHHhhh--h--------
Confidence 3579999999999999999863 335899999999999999998532 22 2468999999866541 0
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCChhHH---------------
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHKRADL--------------- 255 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~r~dL--------------- 255 (382)
+ ...||+|++- |...+.+....++
T Consensus 172 -----~----------------------------------~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~ 212 (456)
T 3m4x_A 172 -----F----------------------------------SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKR 212 (456)
T ss_dssp -----H----------------------------------TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHH
T ss_pred -----c----------------------------------cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHH
Confidence 1 3569999862 3344444433332
Q ss_pred -HHHHHHHHhhccCCCcEEEE
Q 045407 256 -VLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 256 -~~yFr~V~~~L~~pGGiFVf 275 (382)
...++++++.|+ |||++|+
T Consensus 213 Q~~iL~~a~~~Lk-pGG~LvY 232 (456)
T 3m4x_A 213 QQEILSSAIKMLK-NKGQLIY 232 (456)
T ss_dssp HHHHHHHHHHTEE-EEEEEEE
T ss_pred HHHHHHHHHHhcC-CCcEEEE
Confidence 277999999999 9999998
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7.4e-08 Score=96.28 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=50.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
..+|||+|||+|.++..|++.+ .+|+|+|+|++||+.|+++... .+..++.|+++|+.++
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~~--~~V~gvD~s~~al~~A~~n~~~----~~~~~v~f~~~d~~~~ 346 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARL----NGLQNVTFYHENLEED 346 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH----TTCCSEEEEECCTTSC
T ss_pred CCEEEECCCCCCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEECCHHHH
Confidence 4579999999999999999986 4799999999999999998532 1223799999999774
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.9e-09 Score=99.65 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=67.1
Q ss_pred CcccccCC------CccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE-EeccCCCchhhhhcc
Q 045407 115 LHLQEDFC------GTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL-FHGNVLQPLEAKLVR 186 (382)
Q Consensus 115 ~~LLEl~C------GTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l-~~gDV~~~~~~~~~~ 186 (382)
.+|||+|| |||. ..+++. +...+|+|||+|+. + .++.+ +++|++++.
T Consensus 65 ~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v----------------~~v~~~i~gD~~~~~------ 119 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V----------------SDADSTLIGDCATVH------ 119 (290)
T ss_dssp CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B----------------CSSSEEEESCGGGCC------
T ss_pred CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C----------------CCCEEEEECccccCC------
Confidence 47999999 5576 333443 33468999999997 1 14678 999997665
Q ss_pred cchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch-------hcccCChhHHHHHH
Q 045407 187 YEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS-------CCCLHKRADLVLYF 259 (382)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S-------~~yL~~r~dL~~yF 259 (382)
+ ..+||+|+|-... ..+......+...|
T Consensus 120 -----------~----------------------------------~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l 154 (290)
T 2xyq_A 120 -----------T----------------------------------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLC 154 (290)
T ss_dssp -----------C----------------------------------SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHH
T ss_pred -----------c----------------------------------cCcccEEEEcCCccccccccccccchHHHHHHHH
Confidence 1 2569999984321 12222334566899
Q ss_pred HHHHhhccCCCcEEEEeccCC
Q 045407 260 KHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl~gg 280 (382)
+.++++|+ |||.|++.++.+
T Consensus 155 ~~a~r~Lk-pGG~~v~~~~~~ 174 (290)
T 2xyq_A 155 GFIKQKLA-LGGSIAVKITEH 174 (290)
T ss_dssp HHHHHHEE-EEEEEEEEECSS
T ss_pred HHHHHhcC-CCcEEEEEEecc
Confidence 99999999 999999977644
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=97.64 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
+-..+.++... ++-....+|||+|||||.++..|++++ .+|+|||+|++|++.|+++.. +..++.++++|+
T Consensus 35 d~~i~~~Iv~~-l~~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~------~~~~v~vi~gD~ 105 (295)
T 3gru_A 35 DKNFVNKAVES-ANLTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKE------LYNNIEIIWGDA 105 (295)
T ss_dssp CHHHHHHHHHH-TTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHH------HCSSEEEEESCT
T ss_pred CHHHHHHHHHh-cCCCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhc------cCCCeEEEECch
Confidence 33455555543 333334579999999999999999997 479999999999999999852 124799999999
Q ss_pred CCch
Q 045407 177 LQPL 180 (382)
Q Consensus 177 ~~~~ 180 (382)
++++
T Consensus 106 l~~~ 109 (295)
T 3gru_A 106 LKVD 109 (295)
T ss_dssp TTSC
T ss_pred hhCC
Confidence 8876
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-08 Score=101.72 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=76.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC------------CCcceEEEeccCCCchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD------------GYSRISLFHGNVLQPLE 181 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d------------~~~RI~l~~gDV~~~~~ 181 (382)
+.+|||+|||||.+++++|++.....|+++|+|++++++|++|... .... +-..+.++++|+.++..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~-n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML-NFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH-HCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH-hcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3469999999999999999984445799999999999999998532 1000 11238999999865541
Q ss_pred hhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHH
Q 045407 182 AKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKH 261 (382)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~ 261 (382)
. . ...||+|+ ++-++- ...++..
T Consensus 127 ----------------~--------------------------------~-~~~fD~I~--lDP~~~------~~~~l~~ 149 (378)
T 2dul_A 127 ----------------E--------------------------------R-HRYFHFID--LDPFGS------PMEFLDT 149 (378)
T ss_dssp ----------------H--------------------------------S-TTCEEEEE--ECCSSC------CHHHHHH
T ss_pred ----------------h--------------------------------c-cCCCCEEE--eCCCCC------HHHHHHH
Confidence 0 0 24699999 345432 2467888
Q ss_pred HHhhccCCCcEEEEe
Q 045407 262 VLHALSKKGGIFVMD 276 (382)
Q Consensus 262 V~~~L~~pGGiFVfD 276 (382)
+.+.|+ +||++++-
T Consensus 150 a~~~lk-~gG~l~vt 163 (378)
T 2dul_A 150 ALRSAK-RRGILGVT 163 (378)
T ss_dssp HHHHEE-EEEEEEEE
T ss_pred HHHhcC-CCCEEEEE
Confidence 899998 99999884
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.2e-08 Score=90.14 Aligned_cols=74 Identities=16% Similarity=0.059 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
+-..+.++... .+-....+|||+|||||.++..|++++. .+|+|||+|+.|++.++++ . ..++.++++|+
T Consensus 16 d~~i~~~iv~~-~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~~v~avEid~~~~~~~~~~--~------~~~v~~i~~D~ 85 (249)
T 3ftd_A 16 SEGVLKKIAEE-LNIEEGNTVVEVGGGTGNLTKVLLQHPL-KKLYVIELDREMVENLKSI--G------DERLEVINEDA 85 (249)
T ss_dssp CHHHHHHHHHH-TTCCTTCEEEEEESCHHHHHHHHTTSCC-SEEEEECCCHHHHHHHTTS--C------CTTEEEECSCT
T ss_pred CHHHHHHHHHh-cCCCCcCEEEEEcCchHHHHHHHHHcCC-CeEEEEECCHHHHHHHHhc--c------CCCeEEEEcch
Confidence 34455555554 3333346899999999999999999953 4899999999999999876 1 14799999999
Q ss_pred CCch
Q 045407 177 LQPL 180 (382)
Q Consensus 177 ~~~~ 180 (382)
++++
T Consensus 86 ~~~~ 89 (249)
T 3ftd_A 86 SKFP 89 (249)
T ss_dssp TTCC
T ss_pred hhCC
Confidence 8877
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-08 Score=95.43 Aligned_cols=62 Identities=21% Similarity=0.156 Sum_probs=52.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|||+|||||.++..++++.+..+|+|||+|++||+.|+++... .+ .++.++++|+.+++
T Consensus 27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~----~g-~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE----FS-DRVSLFKVSYREAD 88 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG----GT-TTEEEEECCGGGHH
T ss_pred CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh----cC-CcEEEEECCHHHHH
Confidence 3579999999999999999996556899999999999999998532 12 58999999987765
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-08 Score=95.14 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC--CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR--RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG 174 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~--~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g 174 (382)
|-..+.++... ++-....+|||+|||||.++..|++++.. .+|+|||+|++|++.|+++. ..++.++++
T Consensus 27 d~~i~~~iv~~-~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--------~~~v~~i~~ 97 (279)
T 3uzu_A 27 DHGVIDAIVAA-IRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--------GELLELHAG 97 (279)
T ss_dssp CHHHHHHHHHH-HCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--------GGGEEEEES
T ss_pred CHHHHHHHHHh-cCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--------CCCcEEEEC
Confidence 33445555543 33333467999999999999999999853 33999999999999999982 147999999
Q ss_pred cCCCchhhh
Q 045407 175 NVLQPLEAK 183 (382)
Q Consensus 175 DV~~~~~~~ 183 (382)
|++++++..
T Consensus 98 D~~~~~~~~ 106 (279)
T 3uzu_A 98 DALTFDFGS 106 (279)
T ss_dssp CGGGCCGGG
T ss_pred ChhcCChhH
Confidence 999887543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-08 Score=95.67 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=49.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..|||+|||||.++..+|+.+ .+|+|||+|++|++.|++|... .+..++.++++|+.+..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~----ng~~~v~~~~~d~~~~~ 274 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAA----NHIDNVQIIRMAAEEFT 274 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHH----TTCCSEEEECCCSHHHH
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHH----cCCCceEEEECCHHHHH
Confidence 3569999999999999999865 4799999999999999998532 12247999999986543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.8e-08 Score=97.74 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=47.6
Q ss_pred CcccccCCCccHhHHHHHHhC-------------CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-------------SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-------------~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|+|.|||||.+++.+++.- ....++|+|+++.|++.|+.+... ......++.+.++|.+..+
T Consensus 173 ~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 173 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--HGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH--TTCCSSCCSEEECCTTTSC
T ss_pred CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH--hCCCcCCCCEeeCCCCCCc
Confidence 479999999999999988752 124699999999999999987532 1111115778999987654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=8.2e-07 Score=94.59 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=50.4
Q ss_pred CCcccccCCCccHhHHHHHHhC------------------------------------------CCCeEEEEeCCHHHHH
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD------------------------------------------SRRTAVGLDLDLEALE 151 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g------------------------------------------~~~tVvGVDLS~emL~ 151 (382)
...|+|.+||||.++++.|..+ +..+++|+|+|+.|++
T Consensus 191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~ 270 (703)
T 3v97_A 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ 270 (703)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence 3579999999999999988764 1247999999999999
Q ss_pred HHHHhccccccCCCCcceEEEeccCCCch
Q 045407 152 WCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 152 ~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|++|... .+ -..+|.|.++|+.++.
T Consensus 271 ~A~~N~~~-ag--v~~~i~~~~~D~~~~~ 296 (703)
T 3v97_A 271 RARTNARL-AG--IGELITFEVKDVAQLT 296 (703)
T ss_dssp HHHHHHHH-TT--CGGGEEEEECCGGGCC
T ss_pred HHHHHHHH-cC--CCCceEEEECChhhCc
Confidence 99998643 11 1235999999997654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=86.84 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=47.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLE 181 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~ 181 (382)
.+|||+|||||.++. ++ ++...+|+|||+|+.|++.++++... ..++.++++|+.++++
T Consensus 23 ~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~------~~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 23 QAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCH
T ss_pred CEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhcc------CCceEEEECchhhCCH
Confidence 579999999999999 65 45322399999999999999987521 2479999999988763
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.3e-07 Score=87.11 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=50.6
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||+|..|+.+|+. +...+|+|+|+|+.+|+.++++... + +..+|.++++|+.++.
T Consensus 104 ~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r-~---g~~~v~~~~~D~~~~~ 166 (309)
T 2b9e_A 104 SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR-A---GVSCCELAEEDFLAVS 166 (309)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-T---TCCSEEEEECCGGGSC
T ss_pred CEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-c---CCCeEEEEeCChHhcC
Confidence 47999999999999999986 3446899999999999999998532 2 2246999999987654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-07 Score=89.14 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCH-------HHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDL-------EALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~-------emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+|||+|||||.++..+++.|. +|+|+|+|+ +||+.|+++... .+. ..||.++++|+.++
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~-~~~--~~ri~~~~~d~~~~ 151 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPET-QDT--AARINLHFGNAAEQ 151 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHH-HHH--HTTEEEEESCHHHH
T ss_pred CeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHh-hCC--ccCeEEEECCHHHH
Confidence 4699999999999999999874 699999999 999999876421 110 13699999998664
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-07 Score=96.73 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=72.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCC----eEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRR----TAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~----tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
..+|+++|||||.|+..-++.+.+. +|++|+-++ |-..|++..... .-..+|.+++|||++..
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N---~~~dkVtVI~gd~eev~--------- 424 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE---EWGSQVTVVSSDMREWV--------- 424 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH---TTGGGEEEEESCTTTCC---------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc---cCCCeEEEEeCcceecc---------
Confidence 4579999999999955555544322 689999998 444565543221 11358999999999877
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
+ .+++||||+=--. |+...+-...++-..-+.|+ |
T Consensus 425 --------L----------------------------------PEKVDIIVSEwMG--~fLl~E~mlevL~Ardr~LK-P 459 (637)
T 4gqb_A 425 --------A----------------------------------PEKADIIVSELLG--SFADNELSPECLDGAQHFLK-D 459 (637)
T ss_dssp --------C----------------------------------SSCEEEEECCCCB--TTBGGGCHHHHHHHHGGGEE-E
T ss_pred --------C----------------------------------CcccCEEEEEcCc--ccccccCCHHHHHHHHHhcC-C
Confidence 3 4679999996533 33433445577777778888 9
Q ss_pred CcEEEE
Q 045407 270 GGIFVM 275 (382)
Q Consensus 270 GGiFVf 275 (382)
||+.|=
T Consensus 460 gGimiP 465 (637)
T 4gqb_A 460 DGVSIP 465 (637)
T ss_dssp EEEEES
T ss_pred CcEEcc
Confidence 999753
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-07 Score=95.04 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=50.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+|||+|||+|..+..+++.+. +|+|||+|+.|+++|++|... +. .+..+|.++++|+.++
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~-~~-~gl~~i~~i~~Da~~~ 155 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPL-LL-NEGKDVNILTGDFKEY 155 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHH-HS-CTTCEEEEEESCGGGS
T ss_pred CEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHH-hc-cCCCcEEEEECcHHHh
Confidence 4699999999999999999884 799999999999999998532 10 0124799999999875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-07 Score=96.73 Aligned_cols=111 Identities=12% Similarity=-0.001 Sum_probs=75.6
Q ss_pred CCcccccCCCccHhHHHHHHh----C---------CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRS----D---------SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~----g---------~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|||+|||||.|+..-++. + ...+|++|+-++.+....+..+.+.. ..+|.++++||++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~----~d~VtVI~gd~eev~ 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTW----KRRVTIIESDMRSLP 485 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTT----TTCSEEEESCGGGHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCC----CCeEEEEeCchhhcc
Confidence 568999999999997543222 2 22389999999977655555443322 247999999999876
Q ss_pred hhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHH
Q 045407 181 EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFK 260 (382)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr 260 (382)
+. .+ +-..+++||||+=. ++||...+-....+.
T Consensus 486 -----------------lp----------------~~------------~~~~ekVDIIVSEl--mGsfl~nEL~pe~Ld 518 (745)
T 3ua3_A 486 -----------------GI----------------AK------------DRGFEQPDIIVSEL--LGSFGDNELSPECLD 518 (745)
T ss_dssp -----------------HH----------------HH------------HTTCCCCSEEEECC--CBTTBGGGSHHHHHH
T ss_pred -----------------cc----------------cc------------cCCCCcccEEEEec--cccccchhccHHHHH
Confidence 20 00 00146799999975 456555555566777
Q ss_pred HHHhhccCCCcEEEEe
Q 045407 261 HVLHALSKKGGIFVMD 276 (382)
Q Consensus 261 ~V~~~L~~pGGiFVfD 276 (382)
.|.+.|+ |||++|=+
T Consensus 519 ~v~r~Lk-p~Gi~iP~ 533 (745)
T 3ua3_A 519 GVTGFLK-PTTISIPQ 533 (745)
T ss_dssp TTGGGSC-TTCEEESC
T ss_pred HHHHhCC-CCcEEECC
Confidence 7788898 99997643
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-07 Score=93.29 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=73.3
Q ss_pred CcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcc-eEEEeccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSR-ISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R-I~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.+++++|++... ..|++||+|+.+++.+++|... .+- ..+ +.++++|+.++...
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~-Ngl--~~~~v~v~~~Da~~~l~~---------- 120 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL-NNI--PEDRYEIHGMEANFFLRK---------- 120 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH-TTC--CGGGEEEECSCHHHHHHS----------
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-hCC--CCceEEEEeCCHHHHHHH----------
Confidence 46999999999999999996321 3799999999999999998532 111 124 99999998654300
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+ ...||+|++=- ++. ...++..+.+.|+ +||+
T Consensus 121 -------------------------------------~~-~~~fD~V~lDP--~g~------~~~~l~~a~~~Lk-~gGl 153 (392)
T 3axs_A 121 -------------------------------------EW-GFGFDYVDLDP--FGT------PVPFIESVALSMK-RGGI 153 (392)
T ss_dssp -------------------------------------CC-SSCEEEEEECC--SSC------CHHHHHHHHHHEE-EEEE
T ss_pred -------------------------------------hh-CCCCcEEEECC--CcC------HHHHHHHHHHHhC-CCCE
Confidence 00 24699998543 321 1347778888999 9999
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
+++
T Consensus 154 l~~ 156 (392)
T 3axs_A 154 LSL 156 (392)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.6e-06 Score=75.36 Aligned_cols=135 Identities=7% Similarity=-0.089 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG 174 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g 174 (382)
...+.||+..+.. +.+|||+||| .|+.|+.+....+|+.||.|+++.+.|+++.. +.+-....+|.+++|
T Consensus 18 ~~~~~~L~~~l~~------a~~VLEiGtG---ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~g 87 (202)
T 3cvo_A 18 PAEAEALRMAYEE------AEVILEYGSG---GSTVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWT 87 (202)
T ss_dssp HHHHHHHHHHHHH------CSEEEEESCS---HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEEC
T ss_pred HHHHHHHHHHhhC------CCEEEEECch---HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEe
Confidence 4456777773322 5579999986 36666554434689999999999999998743 222101358999999
Q ss_pred cCCCch-hhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCC-CCCCccEEEEccchhcccCCh
Q 045407 175 NVLQPL-EAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKS-SLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 175 DV~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fDiV~afn~S~~yL~~r 252 (382)
|..+.. |- -+ .+.+.-+.+..-.... -.. ...+||+|+.=-. ++
T Consensus 88 da~~~~~wg-~p----------------~~~~~~~~l~~~~~~i-----------~~~~~~~~fDlIfIDg~------k~ 133 (202)
T 3cvo_A 88 DIGPTGDWG-HP----------------VSDAKWRSYPDYPLAV-----------WRTEGFRHPDVVLVDGR------FR 133 (202)
T ss_dssp CCSSBCGGG-CB----------------SSSTTGGGTTHHHHGG-----------GGCTTCCCCSEEEECSS------SH
T ss_pred Cchhhhccc-cc----------------ccchhhhhHHHHhhhh-----------hccccCCCCCEEEEeCC------Cc
Confidence 976531 10 00 0000000000000000 000 1357999987652 22
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEec
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
..+|..+...|+ |||++|+|-
T Consensus 134 ---~~~~~~~l~~l~-~GG~Iv~DN 154 (202)
T 3cvo_A 134 ---VGCALATAFSIT-RPVTLLFDD 154 (202)
T ss_dssp ---HHHHHHHHHHCS-SCEEEEETT
T ss_pred ---hhHHHHHHHhcC-CCeEEEEeC
Confidence 377777889998 999999984
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=90.31 Aligned_cols=64 Identities=23% Similarity=0.082 Sum_probs=46.3
Q ss_pred CcccccCCCccHhHHHHHHhCC------------------CCeEEEEeCCHHHHHHHHHhccccccCCCC---cceEEEe
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS------------------RRTAVGLDLDLEALEWCMENNLNKVGADGY---SRISLFH 173 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~------------------~~tVvGVDLS~emL~~A~e~~~~kl~~d~~---~RI~l~~ 173 (382)
.+|+|.|||||.+.+..++.-. ...++|+|+++.|++.|+.+..- ..... .++.+++
T Consensus 171 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l--~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 171 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL--HDIEGNLDHGGAIRL 248 (541)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT--TTCCCBGGGTBSEEE
T ss_pred CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH--hCCCccccccCCeEe
Confidence 4799999999999988876421 13699999999999999987532 11111 1277889
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
+|.+..+
T Consensus 249 gDtL~~~ 255 (541)
T 2ar0_A 249 GNTLGSD 255 (541)
T ss_dssp SCTTSHH
T ss_pred CCCcccc
Confidence 9976654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-06 Score=85.40 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=110.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|+|+|||||.+|..++.. +++..+++... .+.. ...++++.-|.-.-++..+++.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~--------------ii~~i~~~~~~-~~~~-~pe~~v~~nDLp~NDFn~lF~~------ 110 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDF--------------IVKHISKRFDA-AGID-PPEFTAFFSDLPSNDFNTLFQL------ 110 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHH--------------HHHHHHHHHHH-TTCC-CCCEEEEEEECTTSCHHHHHHH------
T ss_pred ceEEEecCCCCChhHHHHHHH--------------HHHHHHHHHhh-cCCC-CCceeEEecCCCccchHHHHhh------
Confidence 578999999999999988754 45544443311 1111 2368888888654443333222
Q ss_pred hccccccccCccc--cchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh------------------
Q 045407 194 RNISLEECDNTLE--TSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA------------------ 253 (382)
Q Consensus 194 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~------------------ 253 (382)
|.... .... ........+.+.++..++..-.+-|+...+|+|++.. ++-||.+..
T Consensus 111 --L~~~~--~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~-aLHWls~~p~~l~~~~~~~~nkg~i~~ 185 (374)
T 3b5i_A 111 --LPPLV--SNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAF-SLHWLSQVPESVTDRRSAAYNRGRVFI 185 (374)
T ss_dssp --SCCBC--CCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEES-CTTBCSSCCGGGGCTTSTTCCTTTSSS
T ss_pred --hhhhh--hhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecc-eeeeeccCchhhhccccccccCCceEe
Confidence 11100 0000 0000011122344444555556778788999999986 666666333
Q ss_pred -----------------HHHHHHHHHHhhccCCCcEEEEeccCCCchh-hhhHhhh-cc-CCeEEEEeecccccccceEE
Q 045407 254 -----------------DLVLYFKHVLHALSKKGGIFVMDLYGGTSSE-QKLRLQR-RF-ANFTYVWEQAEFDIIERKTR 313 (382)
Q Consensus 254 -----------------dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e-~kl~~~R-~~-~~~tyvWeq~~fD~~~~~~r 313 (382)
|+...|+..++.|+ |||.||+=+.|..... ..-.... .+ +-+.-.|..- .. ...+
T Consensus 186 ~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~-pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l-~~--eG~i- 260 (374)
T 3b5i_A 186 HGAGEKTTTAYKRQFQADLAEFLRARAAEVK-RGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDL-VR--EGLV- 260 (374)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHT-TS--SSSS-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHH-HH--hCCc-
Confidence 66778999999999 9999999877532110 0000000 00 0000012210 00 0000
Q ss_pred EEEEEEeecccceeeeeeeeeEEecCHHHHHHHHH-HcCCcEEEEEecc
Q 045407 314 ISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLE-EAGFRSVHFWLRE 361 (382)
Q Consensus 314 i~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Le-eAGF~~V~v~~r~ 361 (382)
... ++ ..|..-|...|+.|++.+|+ ++||+..++-..+
T Consensus 261 --------~~e-~~-d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~ 299 (374)
T 3b5i_A 261 --------AAE-KR-DGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYK 299 (374)
T ss_dssp --------CHH-HH-SSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred --------chh-hc-ccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence 000 11 11334466779999999998 5999988875433
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.4e-06 Score=84.66 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=49.9
Q ss_pred CCcccccCCCccHhHHHHHHh---CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRS---DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~---g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|+|.+||||.+.+..++. .....++|+|+++.++++|+.+..- ..-...++.+.++|.+..+
T Consensus 222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l--~gi~~~~~~I~~gDtL~~d 289 (542)
T 3lkd_A 222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL--HGVPIENQFLHNADTLDED 289 (542)
T ss_dssp TCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH--TTCCGGGEEEEESCTTTSC
T ss_pred CCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH--cCCCcCccceEecceeccc
Confidence 357999999999999888876 2245899999999999999987432 1111246889999987664
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.1e-06 Score=82.15 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=82.3
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-ccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-VGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+||=+|-|.|.++.++++.-+-.+|+.||||++++++|++....- .++-...|+.++.+|.+.+..
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~--------- 152 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN--------- 152 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS---------
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh---------
Confidence 4588999999999999999999866568999999999999999874210 011123589999999877651
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~ 268 (382)
-...+||+|+.=.+ .-......| ..+|+.++++|+
T Consensus 153 ----------------------------------------~~~~~yDvIi~D~~--dp~~~~~~L~t~eFy~~~~~~L~- 189 (294)
T 3o4f_A 153 ----------------------------------------QTSQTFDVIISDCT--DPIGPGESLFTSAFYEGCKRCLN- 189 (294)
T ss_dssp ----------------------------------------CSSCCEEEEEESCC--CCCCTTCCSSCCHHHHHHHHTEE-
T ss_pred ----------------------------------------hccccCCEEEEeCC--CcCCCchhhcCHHHHHHHHHHhC-
Confidence 01456999986432 111111111 468999999999
Q ss_pred CCcEEEEe
Q 045407 269 KGGIFVMD 276 (382)
Q Consensus 269 pGGiFVfD 276 (382)
|||+|+.=
T Consensus 190 p~Gv~v~q 197 (294)
T 3o4f_A 190 PGGIFVAQ 197 (294)
T ss_dssp EEEEEEEE
T ss_pred CCCEEEEe
Confidence 99999983
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.8e-06 Score=87.16 Aligned_cols=63 Identities=6% Similarity=-0.036 Sum_probs=43.3
Q ss_pred CCcccccCCCccHhHHHHHHhCC---------------CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS---------------RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~---------------~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
+.+|+|.+||||.+.+..++.-. ...++|+|+++.++++|+.+..-. +- ..+|.+.++|.+.
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~-gi--~~~i~i~~gDtL~ 321 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR-GI--DFNFGKKNADSFL 321 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT-TC--CCBCCSSSCCTTT
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh-CC--Ccccceeccchhc
Confidence 34799999999999887654210 247999999999999999875321 11 1234447777654
Q ss_pred c
Q 045407 179 P 179 (382)
Q Consensus 179 ~ 179 (382)
.
T Consensus 322 ~ 322 (544)
T 3khk_A 322 D 322 (544)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-06 Score=79.42 Aligned_cols=116 Identities=14% Similarity=0.190 Sum_probs=72.6
Q ss_pred CCCCCcccccCCCccHhHHHHHHh-------CCC-----CeEEEEeCCH---HHHH-----------HHHHhccc-----
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRS-------DSR-----RTAVGLDLDL---EALE-----------WCMENNLN----- 159 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~-------g~~-----~tVvGVDLS~---emL~-----------~A~e~~~~----- 159 (382)
++.+.+|||+|||||..+..+++. ++. .++++++..| ++|. +|++....
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 444678999999999988876553 552 4899999877 6666 44443211
Q ss_pred ----cc-cCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCC
Q 045407 160 ----KV-GADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLP 234 (382)
Q Consensus 160 ----kl-~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (382)
.+ -.++..+|.++.||+++... . +. +....
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~-------------~--~~------------------------------~~~~~ 172 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELIS-------------Q--LD------------------------------DSLNQ 172 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGG-------------G--SC------------------------------GGGTT
T ss_pred cchhheeccCCceEEEEEECcHHHHHh-------------h--cc------------------------------cccCC
Confidence 00 12244678899999876330 0 00 00024
Q ss_pred CccEEEEccchhcccCChhH--HHHHHHHHHhhccCCCcEEEE
Q 045407 235 ARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 235 ~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~pGGiFVf 275 (382)
.||+|+.=-++-. .. .+ -..+|+.+++.|+ |||+|+.
T Consensus 173 ~~D~iflD~fsp~--~~-p~lw~~~~l~~l~~~L~-pGG~l~t 211 (257)
T 2qy6_A 173 KVDAWFLDGFAPA--KN-PDMWTQNLFNAMARLAR-PGGTLAT 211 (257)
T ss_dssp CEEEEEECSSCTT--TC-GGGCCHHHHHHHHHHEE-EEEEEEE
T ss_pred eEEEEEECCCCcc--cC-hhhcCHHHHHHHHHHcC-CCcEEEE
Confidence 6999986332211 01 12 2578999999999 9999995
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.9e-06 Score=73.66 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=87.6
Q ss_pred CCCCCCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCcc-HhHHHHHH-hCCCCeEEEEeCCHHHHHH
Q 045407 75 NPSTDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTA-LLSTEWLR-SDSRRTAVGLDLDLEALEW 152 (382)
Q Consensus 75 ~~~~~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG-~LS~elar-~g~~~tVvGVDLS~emL~~ 152 (382)
+.|+=.|-+++..+.+ ++||.+.+. .+.+++|+|||+| +.|..|++ .|. +|+++|+++.+++
T Consensus 10 ~~~~~~~~~~~m~e~L-------aeYI~~~~~------~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av~- 73 (153)
T 2k4m_A 10 HSSGLVPRGSHMWNDL-------AVYIIRCSG------PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHGG- 73 (153)
T ss_dssp CCCCCCCCCCHHHHHH-------HHHHHHHSC------SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSSTT-
T ss_pred ccCCcccchhhHHHHH-------HHHHHhcCC------CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCccccc-
Confidence 4566677777774443 366655442 1346999999999 79999997 885 6999999995442
Q ss_pred HHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCC
Q 045407 153 CMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS 232 (382)
Q Consensus 153 A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (382)
+++.|+.+|.. .+
T Consensus 74 ------------------~v~dDiF~P~~---------------~~---------------------------------- 86 (153)
T 2k4m_A 74 ------------------IVRDDITSPRM---------------EI---------------------------------- 86 (153)
T ss_dssp ------------------EECCCSSSCCH---------------HH----------------------------------
T ss_pred ------------------eEEccCCCCcc---------------cc----------------------------------
Confidence 78899988761 01
Q ss_pred CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhh--hHhhhccCCeEEEEee
Q 045407 233 LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQK--LRLQRRFANFTYVWEQ 302 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~k--l~~~R~~~~~tyvWeq 302 (382)
...+|+|-+++ -+.+|...+..+++... --+|+=-.++...... +++..--....|+|+.
T Consensus 87 Y~~~DLIYsir-------PP~El~~~i~~lA~~v~---adliI~pL~~E~~~~~~~~kl~ny~g~~fY~~~~ 148 (153)
T 2k4m_A 87 YRGAALIYSIR-------PPAEIHSSLMRVADAVG---ARLIIKPLTGEDIVTERKMKLVNYGRTYFYEYIA 148 (153)
T ss_dssp HTTEEEEEEES-------CCTTTHHHHHHHHHHHT---CEEEEECBTTBCCCCCTTCEEEEETTEEEEEEEC
T ss_pred cCCcCEEEEcC-------CCHHHHHHHHHHHHHcC---CCEEEEcCCCCcCCCCCceEEEecCCceEEEEeh
Confidence 25789997766 35789999999998775 4555533333322211 2221101345677774
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.6e-06 Score=81.26 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=106.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-ccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-VGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+..|+|+|||+|..|..++.. +++..+++.... .+. ....++++.-|.-.-++..+++.=|.-
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~--------------ii~~i~~~~~~~~~~~-~~pe~~v~~nDLp~NDFN~lF~~L~~~- 116 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRD--------------IVQSIDKVGQEKKNEL-ERPTIQIFLNDLFQNDFNSVFKLLPSF- 116 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHH--------------HHHHHTCC-----------CEEEEEEECCTTSCHHHHHHHHHHH-
T ss_pred ceEEEecCCCCCchHHHHHHH--------------HHHHHHHHhhhcccCC-CCCceEEEecCCCccchHHHHhhhhhh-
Confidence 567999999999999988865 565555443110 111 123688888887655543443332210
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh-------------------
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA------------------- 253 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~------------------- 253 (382)
.+.+.- ......+.+.++..++..-.+-|+...+|+|++.. ++-||.+..
T Consensus 117 ~~~~~~----------~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~~~s~~~nkg~i~i~ 185 (384)
T 2efj_A 117 YRNLEK----------ENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCY-CLHWLSQVPSGLVTELGISVNKGCIYSS 185 (384)
T ss_dssp HHHHHH----------HTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEES-CTTBCSSSCCC------CCCCTTCSSSC
T ss_pred Hhhhhh----------hccCCCCceEEEecchhhhhccCCCCceEEEEecc-eeeecCCCchhhhccccccccCCceEec
Confidence 000000 00000123445555555556778888999999986 555655432
Q ss_pred -----------------HHHHHHHHHHhhccCCCcEEEEeccCCCch--hhhhHhhhccCCeEEEEeecccccccceEEE
Q 045407 254 -----------------DLVLYFKHVLHALSKKGGIFVMDLYGGTSS--EQKLRLQRRFANFTYVWEQAEFDIIERKTRI 314 (382)
Q Consensus 254 -----------------dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~--e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri 314 (382)
|+...|+..++.|+ |||.||+-+.|..+. .... .. -+.-.|.. .....+
T Consensus 186 ~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~-pGG~mvl~~~gr~~~~~~~~~--~~---~l~~al~~----lv~eGl-- 253 (384)
T 2efj_A 186 KASRPPIQKAYLDQFTKDFTTFLRIHSEELI-SRGRMLLTFICKEDEFDHPNS--MD---LLEMSIND----LVIEGH-- 253 (384)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEECCCTTTCCCCH--HH---HHHHHHHH----HHHHTS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCeEEEEEecCCCcccCccc--HH---HHHHHHHH----HHHhCC--
Confidence 22233899999999 999999988763221 0000 00 00001211 000000
Q ss_pred EEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC-CcEEEE
Q 045407 315 SLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG-FRSVHF 357 (382)
Q Consensus 315 ~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG-F~~V~v 357 (382)
+ .+. + ...|..-|...|++|++.+|+++| |+..++
T Consensus 254 -----i-~~e-k-~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 254 -----L-EEE-K-LDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp -----S-CHH-H-HHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred -----c-chh-h-hcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 0 000 1 111444567889999999999985 877775
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.4e-06 Score=78.03 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=46.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc---CCCC---cceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG---ADGY---SRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~---~d~~---~RI~l~~gDV~~~ 179 (382)
.+|||+|||+|..+..+|++|. +|+|||+++.+.+.++++... .. ...+ .+|.++++|+.+.
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~-a~~~~~~~~~l~~~i~~~~~D~~~~ 157 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLAR-GYADAEIGGWLQERLQLIHASSLTA 157 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHH-HHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHH-HHhhHhhhhhhhcCEEEEECCHHHH
Confidence 4799999999999999999985 699999999886666554211 00 0011 4799999998654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=75.89 Aligned_cols=123 Identities=17% Similarity=0.063 Sum_probs=71.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..|||||||+|-.+...+++..-..|+|+|++.++. .+.+. ...-+..+..++.++....
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~----~~pi~--~~~~g~~ii~~~~~~dv~~-------------- 135 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH----EKPMN--VQSLGWNIITFKDKTDIHR-------------- 135 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC----CCCCC--CCBTTGGGEEEECSCCTTT--------------
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc----ccccc--cCcCCCCeEEEeccceehh--------------
Confidence 469999999999999877653324688899886541 01110 0000113444555541111
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc----ccCChhHHHHHHHHHHhhccCCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC----CLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~----yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+...++|+|+|=. +.+ +... ......++-|.+.|+ ||
T Consensus 136 ------------------------------------l~~~~~DlVlsD~-apnsG~~~~D~-~rs~~LL~~a~~~Lk-pG 176 (277)
T 3evf_A 136 ------------------------------------LEPVKCDTLLCDI-GESSSSSVTEG-ERTVRVLDTVEKWLA-CG 176 (277)
T ss_dssp ------------------------------------SCCCCCSEEEECC-CCCCSCHHHHH-HHHHHHHHHHHHHHT-TC
T ss_pred ------------------------------------cCCCCccEEEecC-ccCcCchHHHH-HHHHHHHHHHHHHhC-CC
Confidence 2246799999843 333 3222 122233889999999 99
Q ss_pred -cEEEEeccC--CCchhhhhH-hhhccCCe
Q 045407 271 -GIFVMDLYG--GTSSEQKLR-LQRRFANF 296 (382)
Q Consensus 271 -GiFVfDl~g--g~s~e~kl~-~~R~~~~~ 296 (382)
|.||+.++. |..+...+. +++.|..+
T Consensus 177 ~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V 206 (277)
T 3evf_A 177 VDNFCVKVLAPYMPDVLEKLELLQRRFGGT 206 (277)
T ss_dssp CSEEEEEESCTTSHHHHHHHHHHHHHHCCE
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHhcCCE
Confidence 999999998 554433222 23445443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.5e-05 Score=81.55 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=36.5
Q ss_pred CCcccccCCCccHhHHHHHHhCC---CCeEEEEeCCHHHHHHH--HHh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS---RRTAVGLDLDLEALEWC--MEN 156 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~---~~tVvGVDLS~emL~~A--~e~ 156 (382)
..+|+|.|||||.+.+.+++... ..+++|+|+|+.+++.| +.+
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlN 369 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLG 369 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHH
Confidence 45799999999999999998753 24799999999999999 544
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.85 E-value=4.5e-05 Score=73.96 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=49.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|..||+|.+|..+++++ .+|+|+|.|++||+.|++ . . + .|+.++++|..++.
T Consensus 24 g~~VD~T~G~GGHS~~il~~~--g~VigiD~Dp~Ai~~A~~-L-~----~--~rv~lv~~~f~~l~ 79 (285)
T 1wg8_A 24 GVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKG-L-H----L--PGLTVVQGNFRHLK 79 (285)
T ss_dssp CEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH-T-C----C--TTEEEEESCGGGHH
T ss_pred CEEEEeCCCCcHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-h-c----c--CCEEEEECCcchHH
Confidence 468999999999999999984 589999999999999998 4 2 1 48999999998876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.7e-05 Score=74.89 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-----CCCeEEEEeCCH------------------------
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-----SRRTAVGLDLDL------------------------ 147 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-----~~~tVvGVDLS~------------------------ 147 (382)
.+..|..+++.......|..|+|+||.+|.-++.+++.- +.++|+++|...
T Consensus 90 r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~ 169 (282)
T 2wk1_A 90 RLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSV 169 (282)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccccccc
Confidence 445666666654334568899999999999877766431 246899999642
Q ss_pred --HHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCC
Q 045407 148 --EALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDN 225 (382)
Q Consensus 148 --emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (382)
.+++.++++. ++.+- ...+|.++.||..+..
T Consensus 170 ~~~~~~~ar~n~-~~~gl-~~~~I~li~Gda~etL--------------------------------------------- 202 (282)
T 2wk1_A 170 LAVSEEEVRRNF-RNYDL-LDEQVRFLPGWFKDTL--------------------------------------------- 202 (282)
T ss_dssp HCCCHHHHHHHH-HHTTC-CSTTEEEEESCHHHHS---------------------------------------------
T ss_pred chhHHHHHHHHH-HHcCC-CcCceEEEEeCHHHHH---------------------------------------------
Confidence 1466677653 22221 0158999999974422
Q ss_pred cCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 226 CSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 226 ~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
..+...+||+|..=.+. | +....+|..++..|+ |||++|+|=++
T Consensus 203 ---~~~~~~~~d~vfIDaD~--y----~~~~~~Le~~~p~L~-pGGiIv~DD~~ 246 (282)
T 2wk1_A 203 ---PTAPIDTLAVLRMDGDL--Y----ESTWDTLTNLYPKVS-VGGYVIVDDYM 246 (282)
T ss_dssp ---TTCCCCCEEEEEECCCS--H----HHHHHHHHHHGGGEE-EEEEEEESSCT
T ss_pred ---hhCCCCCEEEEEEcCCc--c----ccHHHHHHHHHhhcC-CCEEEEEcCCC
Confidence 00113457776655442 3 456789999999999 99999997663
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=77.85 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=78.8
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC----C-CCcceEEEeccCCCchhhhhccc
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA----D-GYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~----d-~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
.|.+||=+|-|.|.++.++++... .+|+.||||++++++|++.... +.. + ...|+.++.+|-+.+..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~-~~~~~~d~pr~~rv~vii~Da~~fl~------ 276 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRK-TCGDVLDNLKGDCYQVLIEDCIPVLK------ 276 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC-----CCSSSEETTEEEEESCHHHHHH------
T ss_pred CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchh-hhhhhhccccccceeeehHHHHHHHH------
Confidence 377899999999999999999876 5899999999999999997422 111 0 12368899999765541
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc------ccCChhHHHHHHHH
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC------CLHKRADLVLYFKH 261 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~------yL~~r~dL~~yFr~ 261 (382)
+..- ...+||+|+.=.+.-. .+...-=-..+|+.
T Consensus 277 -------~~~~---------------------------------~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~ 316 (381)
T 3c6k_A 277 -------RYAK---------------------------------EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 316 (381)
T ss_dssp -------HHHH---------------------------------HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHH
T ss_pred -------hhhh---------------------------------ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHH
Confidence 0000 0356999987533211 11111112567899
Q ss_pred HHhhccCCCcEEEEe
Q 045407 262 VLHALSKKGGIFVMD 276 (382)
Q Consensus 262 V~~~L~~pGGiFVfD 276 (382)
++++|+ |||+||+-
T Consensus 317 ~~~~L~-p~GVlv~Q 330 (381)
T 3c6k_A 317 SMKVLK-QDGKYFTQ 330 (381)
T ss_dssp HHHTEE-EEEEEEEE
T ss_pred HHHhcC-CCCEEEEe
Confidence 999999 99999984
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.81 E-value=3.3e-05 Score=73.18 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=39.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
..|||+|||||.++...++.| ++++|+|++++|++.|+++...
T Consensus 237 ~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 237 DVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp CEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence 479999999999999999998 4799999999999999998643
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.60 E-value=5.8e-05 Score=74.99 Aligned_cols=194 Identities=13% Similarity=0.157 Sum_probs=100.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+..|+|+||++|..|..+...- ++.-+++... .+......++++.-|.-.=++..+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~i--------------i~~i~~~~~~-~~~~~~pe~~v~~nDLp~NDFntlF~~---- 110 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTEL--------------IKTVEELRKK-MGRENSPEYQIFLNDLPGNDFNAIFRS---- 110 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTT--------------HHHHHHHHHS-SSCSSCCEEEEEEEECTTSCHHHHHTT----
T ss_pred CCceEEEecCCCCCcchHHHHHHH--------------HHHHHHHHHh-cCCCCCCceEEEecCCCchHHHHHHHh----
Confidence 345779999999999988766542 2222222110 111011357777766433332222211
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh-------------------
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR------------------- 252 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r------------------- 252 (382)
|.... ...+.+.++..++..-.+-|+...+|+|++.. ++-||.+.
T Consensus 111 ----L~~~~-----------~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~nkg~i~~~~~~p~ 174 (359)
T 1m6e_X 111 ----LPIEN-----------DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQ 174 (359)
T ss_dssp ----TTTSC-----------SCTTCEEEEEEESCSSSCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCC
T ss_pred ----cchhc-----------ccCCCEEEEecchhhhhccCCCCceEEEEehh-hhhhcccCchhhhccCCceEecCCCCH
Confidence 11100 00012333333444445667778899999986 55555542
Q ss_pred -----------hHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecc--c-ccccceEEEEEEE
Q 045407 253 -----------ADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAE--F-DIIERKTRISLHF 318 (382)
Q Consensus 253 -----------~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~--f-D~~~~~~ri~L~F 318 (382)
.|+...|+..++.|+ |||.||+=+.|-.+... . ..+..++|+.-. . |.....+
T Consensus 175 ~v~~ay~~Qf~~D~~~FL~~Ra~EL~-pGG~mvl~~~gr~~~~~-~-----~~~~~~~~~~l~~al~~mv~eGl------ 241 (359)
T 1m6e_X 175 SVLNAYYKQFQEDHALFLRCRAQEVV-PGGRMVLTILGRRSEDR-A-----STECCLIWQLLAMALNQMVSEGL------ 241 (359)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHHHHBC-TTCEEEEEEEECSSSSS-S-----STTTSTTTHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEEecCCCCCc-c-----ccchHHHHHHHHHHHHHHHHccc------
Confidence 366777999999999 99999998775222100 0 001111221100 0 0000000
Q ss_pred EeecccceeeeeeeeeEEecCHHHHHHHHHHcCC-cEEEE
Q 045407 319 HLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF-RSVHF 357 (382)
Q Consensus 319 ~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF-~~V~v 357 (382)
+ .+. + ...|..-|...|++|++.+++++|+ +..++
T Consensus 242 -i-~~e-k-~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 242 -I-EEE-K-MDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp -S-CCS-T-TGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred -c-chh-h-hhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 0 010 1 1135566788999999999999965 55543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=71.08 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=28.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHH
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEA 149 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~em 149 (382)
..|||||||+|-.+...++...-..|+|+|++..+
T Consensus 92 ~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~ 126 (282)
T 3gcz_A 92 GIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG 126 (282)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence 36999999999999987754333479999999864
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00078 Score=62.54 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=37.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..|||.|||+|..+...++.| ++++|+|+++.+++.|+++.
T Consensus 214 ~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~ 254 (260)
T 1g60_A 214 DLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVL 254 (260)
T ss_dssp CEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHH
Confidence 479999999999999999998 57999999999999999985
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0018 Score=64.15 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=47.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|||||.|-++..+.+.|.. .|.++|+++.+++..+.|.. ...++++|+.++.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~-~v~avE~d~~a~~t~~~N~~---------~~~~~~~DI~~~~ 58 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFD-VKMAVEIDQHAINTHAINFP---------RSLHVQEDVSLLN 58 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCE-EEEEECSCHHHHHHHHHHCT---------TSEEECCCGGGCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCc-EEEEEeCCHHHHHHHHHhCC---------CCceEecChhhcC
Confidence 35899999999999999999974 67899999999998888751 3568899998775
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0024 Score=61.45 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=49.8
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRT-AVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~t-VvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+.+..++|||||.|-++..+.+.|.+.. |.++|+|+.+.+.-+.|.. ...++++||+++.
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~---------~~~~~~~DI~~i~ 74 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ---------GKIMYVGDVRSVT 74 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT---------TCEEEECCGGGCC
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC---------CCceeCCChHHcc
Confidence 344466899999999999999999998633 6999999999988777741 2357889998876
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0022 Score=62.57 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=28.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHH
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEA 149 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~em 149 (382)
..++||||++|-.+..++++..-..|+|+|+...+
T Consensus 83 ~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~ 117 (300)
T 3eld_A 83 GRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEG 117 (300)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccc
Confidence 47999999999999999975333468999998643
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=65.52 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=49.4
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|.-||+|-+|..++++ ++..+|+|+|.|++||+.|+ + +. ..|+.|+++|..++.
T Consensus 59 giyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-r----L~---~~Rv~lv~~nF~~l~ 117 (347)
T 3tka_A 59 GIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-T----ID---DPRFSIIHGPFSALG 117 (347)
T ss_dssp CEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-T----CC---CTTEEEEESCGGGHH
T ss_pred CEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-h----hc---CCcEEEEeCCHHHHH
Confidence 46889999999999999987 67789999999999999883 3 21 258999999988775
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0051 Score=60.04 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=81.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc------ccCC-----------CCcceEEEeccC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK------VGAD-----------GYSRISLFHGNV 176 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k------l~~d-----------~~~RI~l~~gDV 176 (382)
...|+.||||.....-++...+++.+++-||+ |+++++-++...+. ++.. ...+..++-+|+
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 35688999999999999998755667888888 88998877653221 1100 024788999999
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
+++.|... +...+. ....+-++++-+ ++.||.. +++.
T Consensus 177 ~d~~w~~~-------ll~~~~----------------------------------d~~~Ptl~iaEg-vL~YL~~-~~~~ 213 (334)
T 1rjd_A 177 NDITETTR-------LLDVCT----------------------------------KREIPTIVISEC-LLCYMHN-NESQ 213 (334)
T ss_dssp TCHHHHHH-------HHHTTC----------------------------------CTTSCEEEEEES-CGGGSCH-HHHH
T ss_pred CCcHHHHH-------HHHhcC----------------------------------CCCCCEEEEEcc-hhhCCCH-HHHH
Confidence 99887311 000000 023355666665 7788664 7889
Q ss_pred HHHHHHHhhccCCCcEE-EEeccCC
Q 045407 257 LYFKHVLHALSKKGGIF-VMDLYGG 280 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiF-VfDl~gg 280 (382)
+.|+.+...+. +|.| ++|..+.
T Consensus 214 ~ll~~ia~~~~--~~~~v~~e~i~~ 236 (334)
T 1rjd_A 214 LLINTIMSKFS--HGLWISYDPIGG 236 (334)
T ss_dssp HHHHHHHHHCS--SEEEEEEEECCC
T ss_pred HHHHHHHhhCC--CcEEEEEeccCC
Confidence 99999998774 6766 5787654
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0035 Score=60.91 Aligned_cols=55 Identities=16% Similarity=0.030 Sum_probs=45.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
...++|||||+|.++..+.+.|.+ .|.++|+|+.+++..+.|... . .++|++++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~-~v~~~e~d~~a~~t~~~N~~~---------~--~~~Di~~~~ 65 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAE-CVYSNEWDKYAQEVYEMNFGE---------K--PEGDITQVN 65 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCE-EEEEECCCHHHHHHHHHHHSC---------C--CBSCGGGSC
T ss_pred CCcEEEECCCcCHHHHHHHHCCCe-EEEEEeCCHHHHHHHHHHcCC---------C--CcCCHHHcC
Confidence 356899999999999999999985 799999999999998888521 1 168887765
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00083 Score=65.37 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=48.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..++|||||+|-++..+.+.|.. ..|+++|+++.+++..+.|.. ...++++|+.++.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---------~~~~~~~Di~~~~ 60 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGIT 60 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---------ccccccCCHHHcc
Confidence 456899999999999999999932 369999999999999999862 2347889998765
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0052 Score=63.39 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=42.7
Q ss_pred CcccccCCCccHhHHHHHHhC-------------CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-------------SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-------------~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|+|.+||||.+.+...+.- ....+.|+|+++.+..+|+-+..- .. ...-.+.++|-+..+
T Consensus 219 ~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l--hg--~~~~~I~~~dtL~~~ 293 (530)
T 3ufb_A 219 ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL--HG--LEYPRIDPENSLRFP 293 (530)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH--HT--CSCCEEECSCTTCSC
T ss_pred CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh--cC--CccccccccccccCc
Confidence 379999999999987654321 123699999999999999877432 11 122356788866543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=64.40 Aligned_cols=65 Identities=6% Similarity=-0.116 Sum_probs=50.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC---CCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD---GYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d---~~~RI~l~~gDV~~~~ 180 (382)
.+|||+++|+|-=|+.+|..+....|+++|+|+.-|...+++... ++.. ....|.+.+.|.+.+.
T Consensus 150 ~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r-~~~~~~~~~~~v~v~~~D~~~~~ 217 (359)
T 4fzv_A 150 DIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHS-YVPEEIRDGNQVRVTSWDGRKWG 217 (359)
T ss_dssp EEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHH-HSCTTTTTSSSEEEECCCGGGHH
T ss_pred CEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHH-hhhhhhccCCceEEEeCchhhcc
Confidence 479999999999999999998877899999999999888776422 2211 1246788888876654
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.005 Score=58.22 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=45.8
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++|||||-|-++.-|-+.|.+ .|.++|+|+.+.+.-+.|.. -.++++|++++.
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~-~v~a~e~d~~a~~ty~~N~~----------~~~~~~DI~~i~ 55 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFR-IICANEYDKSIWKTYESNHS----------AKLIKGDISKIS 55 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCE-EEEEEECCTTTHHHHHHHCC----------SEEEESCGGGCC
T ss_pred eEEEeCcCccHHHHHHHHCCCE-EEEEEeCCHHHHHHHHHHCC----------CCcccCChhhCC
Confidence 4789999999999999999985 78899999999998887752 146889998776
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.04 Score=53.16 Aligned_cols=133 Identities=8% Similarity=-0.088 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+.++++.++.. .+.-|+.||||-=...-++.. ....+++=|| .|+++++.++.. ...+.....+..++.+|+++
T Consensus 89 ~~~d~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL-~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 89 NFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTL-AEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHH-HHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHh-CCCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHH-HhcCCCCCCCeEEEecchHh
Confidence 4666666665422 245689999997776666542 2235899999 599999988874 22222234578899999998
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
.|...+ .. ..|... .-+++.+.-.+.||.. ++....
T Consensus 165 -~~~~~l-------~~----------------------------------~g~d~~-~Pt~~i~Egvl~Yl~~-~~~~~l 200 (310)
T 2uyo_A 165 -DWPPAL-------RS----------------------------------AGFDPS-ARTAWLAEGLLMYLPA-TAQDGL 200 (310)
T ss_dssp -CHHHHH-------HH----------------------------------TTCCTT-SCEEEEECSCGGGSCH-HHHHHH
T ss_pred -hHHHHH-------Hh----------------------------------ccCCCC-CCEEEEEechHhhCCH-HHHHHH
Confidence 653210 00 011112 2355555568888877 588999
Q ss_pred HHHHHhhccCCCcEEEEeccCC
Q 045407 259 FKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~gg 280 (382)
++.+.+.+. +|+.++||..+.
T Consensus 201 l~~l~~~~~-~gs~l~~d~~~~ 221 (310)
T 2uyo_A 201 FTEIGGLSA-VGSRIAVETSPL 221 (310)
T ss_dssp HHHHHHTCC-TTCEEEEECCCT
T ss_pred HHHHHHhCC-CCeEEEEEecCC
Confidence 999999988 899999998754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.01 Score=57.73 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=46.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCC-eE-EEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRR-TA-VGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~-tV-vGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..++|||||.|-++.-+.+.|... .| .++|+|+.+.+.-+.|... . ++++|++++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---------~-~~~~DI~~~~ 68 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---------E-VQVKNLDSIS 68 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---------C-CBCCCTTTCC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---------C-cccCChhhcC
Confidence 5678999999999999999999532 45 6999999999998888621 1 5788998876
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0066 Score=58.44 Aligned_cols=63 Identities=22% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCccEEEEccc--hhcccCChhHHHHHHHHHHhhccCCCc-EEEEeccCCC--chhhhh-HhhhccCCeE
Q 045407 234 PARDIICAFNY--SCCCLHKRADLVLYFKHVLHALSKKGG-IFVMDLYGGT--SSEQKL-RLQRRFANFT 297 (382)
Q Consensus 234 ~~fDiV~afn~--S~~yL~~r~dL~~yFr~V~~~L~~pGG-iFVfDl~gg~--s~e~kl-~~~R~~~~~t 297 (382)
.++|+|+|=-. |=+...+.+--..++.-+.+.|+ ||| -||+=++.|. .+...+ .+++.|..+.
T Consensus 138 ~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk-~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vk 206 (269)
T 2px2_A 138 EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLS-RGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL 206 (269)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhh-cCCcEEEEEECCCCchHHHHHHHHHHHHcCCEE
Confidence 46788886431 11111222212225667778999 899 9999988763 232212 2345565544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.013 Score=57.99 Aligned_cols=81 Identities=10% Similarity=0.018 Sum_probs=59.0
Q ss_pred cCChhhHHHHHHHHHHhhCCC------CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC
Q 045407 92 QSPKGDISYLQKFFLIYVGGR------QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG 165 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr------~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~ 165 (382)
|+---|-.-+.++... ++-. ....|+|+|.|+|.||..|++++...+|++|.+|..++..-++.. .
T Consensus 32 QnFL~d~~i~~~Iv~~-~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~------ 103 (353)
T 1i4w_A 32 FKYLWNPTVYNKIFDK-LDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E------ 103 (353)
T ss_dssp CCCBCCHHHHHHHHHH-HCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T------
T ss_pred cCccCCHHHHHHHHHh-ccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c------
Confidence 4444455556666654 3211 125799999999999999998743247999999999998877763 1
Q ss_pred CcceEEEeccCCCch
Q 045407 166 YSRISLFHGNVLQPL 180 (382)
Q Consensus 166 ~~RI~l~~gDV~~~~ 180 (382)
+.++.++++|++.++
T Consensus 104 ~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 104 GSPLQILKRDPYDWS 118 (353)
T ss_dssp TSSCEEECSCTTCHH
T ss_pred CCCEEEEECCccchh
Confidence 258999999997765
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.013 Score=56.71 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=45.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+||+++|||.|+.+.++++ .+++-||+++..++.-++|. . . ..++.++++|+..
T Consensus 94 ~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl-~---~--~~~~~V~~~D~~~ 148 (283)
T 2oo3_A 94 STLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLP-H---F--NKKVYVNHTDGVS 148 (283)
T ss_dssp SSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSC-C---T--TSCEEEECSCHHH
T ss_pred CceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHh-C---c--CCcEEEEeCcHHH
Confidence 47999999999999999966 47999999999999777763 2 1 2579999999744
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0098 Score=59.63 Aligned_cols=52 Identities=2% Similarity=-0.035 Sum_probs=39.9
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++||||.+|-.|-.++++|. .|+|||+.+ |++-... . .+|.++++|.....
T Consensus 214 ~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~--l~~~l~~-------~--~~V~~~~~d~~~~~ 265 (375)
T 4auk_A 214 WAVDLGACPGGWTYQLVKRNM--WVYSVDNGP--MAQSLMD-------T--GQVTWLREDGFKFR 265 (375)
T ss_dssp EEEEETCTTCHHHHHHHHTTC--EEEEECSSC--CCHHHHT-------T--TCEEEECSCTTTCC
T ss_pred EEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh--cChhhcc-------C--CCeEEEeCcccccc
Confidence 689999999999999999984 799999875 3322211 1 37999999976544
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.018 Score=55.24 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..+..+++.+. .....|||.|||+|..+..-.+.| +..+|+|+++.+.+.|+++.
T Consensus 240 ~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~ 294 (323)
T 1boo_A 240 KLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRF 294 (323)
T ss_dssp HHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGG
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence 44555555432 113469999999999999988888 57999999999999999985
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.026 Score=58.01 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=47.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|||||.|-++.-|.+.|.+ .|.++|+|+.+.+.-+.|... . ....++++|++++.
T Consensus 89 ~~viDLFaG~GGlslG~~~aG~~-~v~avE~d~~A~~ty~~N~~~----~--p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQ-CVFTSEWNKHAVRTYKANHYC----D--PATHHFNEDIRDIT 147 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTTEE-EEEEECCCHHHHHHHHHHSCC----C--TTTCEEESCTHHHH
T ss_pred ceEEEecCCccHHHHHHHHCCCE-EEEEEeCCHHHHHHHHHhccc----C--CCcceeccchhhhh
Confidence 56899999999999999999985 799999999999888777521 1 12346789997765
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.034 Score=54.69 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=65.8
Q ss_pred CcccccCCCccHhHH-HHHHhCCCCeEEEEeCCHHHHHHHHHh--ccccccCCCCcceEEEec-cCCCchhhhhcccchh
Q 045407 115 LHLQEDFCGTALLST-EWLRSDSRRTAVGLDLDLEALEWCMEN--NLNKVGADGYSRISLFHG-NVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~-elar~g~~~tVvGVDLS~emL~~A~e~--~~~kl~~d~~~RI~l~~g-DV~~~~~~~~~~~~~~ 190 (382)
..|+||||+||-.+. ...+.|.. .|+|+|+-..-- +. ..+.+ +..-|.|+++ ||..+.
T Consensus 96 ~~VlDLGaapGGwsq~~~~~~gv~-~V~avdvG~~~h----e~P~~~~ql---~w~lV~~~~~~Dv~~l~---------- 157 (321)
T 3lkz_A 96 GKVIDLGCGRGGWCYYMATQKRVQ-EVRGYTKGGPGH----EEPQLVQSY---GWNIVTMKSGVDVFYRP---------- 157 (321)
T ss_dssp EEEEEETCTTCHHHHHHTTCTTEE-EEEEECCCSTTS----CCCCCCCBT---TGGGEEEECSCCTTSSC----------
T ss_pred CEEEEeCCCCCcHHHHHHhhcCCC-EEEEEEcCCCCc----cCcchhhhc---CCcceEEEeccCHhhCC----------
Confidence 369999999999999 55556654 799999987300 00 00001 1123677777 776554
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc--ccCChhHHHHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC--CLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~--yL~~r~dL~~yFr~V~~~L~~ 268 (382)
..++|+|+|=.---+ -..+.+--.++|.-+.+.|+
T Consensus 158 ------------------------------------------~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~- 194 (321)
T 3lkz_A 158 ------------------------------------------SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLH- 194 (321)
T ss_dssp ------------------------------------------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-
T ss_pred ------------------------------------------CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhc-
Confidence 345888887543111 11111122336666678898
Q ss_pred CC-cEEEEeccCCCc
Q 045407 269 KG-GIFVMDLYGGTS 282 (382)
Q Consensus 269 pG-GiFVfDl~gg~s 282 (382)
+| |-|++=++.|+.
T Consensus 195 ~~~~~f~~KVl~pY~ 209 (321)
T 3lkz_A 195 RGPREFCVKVLCPYM 209 (321)
T ss_dssp TCCCEEEEEESCTTS
T ss_pred cCCCcEEEEEcCCCC
Confidence 78 999999998743
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.035 Score=53.66 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=37.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCH---HHHHHHHHhcc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDL---EALEWCMENNL 158 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~---emL~~A~e~~~ 158 (382)
..|||.|||+|..+..-.+.| +..+|+||++ +..+.|+++..
T Consensus 244 ~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 244 STVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp CEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHH
Confidence 469999999999999999888 5799999999 99999999853
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.02 Score=55.88 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=47.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..++|||||.|-++..+.+.|.. ..|.++|+|+.+.+.-+.|.. ...++++|+.++.
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~---------~~~~~~~DI~~~~ 61 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP---------ETNLLNRNIQQLT 61 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECCCGGGCC
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC---------CCceeccccccCC
Confidence 567899999999999999999963 257899999999998888752 2346789998776
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.15 Score=48.36 Aligned_cols=125 Identities=15% Similarity=0.106 Sum_probs=76.0
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-------CCCCeEEEEe-----CCH---------------------
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-------DSRRTAVGLD-----LDL--------------------- 147 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-------g~~~tVvGVD-----LS~--------------------- 147 (382)
+..+|++ + ...|..|+|.||-.|.-+..+++. ++.++|+|+| -.+
T Consensus 59 ~~~l~~~-i-~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~ 136 (257)
T 3tos_A 59 MDALYRQ-V-LDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGY 136 (257)
T ss_dssp HHHHHHH-T-TTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTH
T ss_pred HHHHHHH-h-hCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchh
Confidence 3455555 2 245888999999999988887652 5667999999 211
Q ss_pred -HHHHHHHH--hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCC
Q 045407 148 -EALEWCME--NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGD 224 (382)
Q Consensus 148 -emL~~A~e--~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (382)
+.|....+ .+..+++.. ..+|.|+.|+..+-... . +..
T Consensus 137 ~~~l~~~l~~~~~~~~~g~~-~~~i~li~G~~~dTL~~-~--------l~~----------------------------- 177 (257)
T 3tos_A 137 PAYLKEVLDAHECSDFFGHV-TQRSVLVEGDVRETVPR-Y--------LAE----------------------------- 177 (257)
T ss_dssp HHHHHHHHHHHHTTSTTTTS-CCSEEEEESCHHHHHHH-H--------HHH-----------------------------
T ss_pred HHHHHHHHHHHhhhhhcCCC-CCcEEEEEecHHHHHHH-H--------HHh-----------------------------
Confidence 12222111 011122221 24789999987543200 0 000
Q ss_pred CcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 225 NCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 225 ~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
.+.+++|+|..=.+ .| +....+|..++..|+ |||++|||=++
T Consensus 178 ------~~~~~~dlv~ID~D--~Y----~~t~~~le~~~p~l~-~GGvIv~DD~~ 219 (257)
T 3tos_A 178 ------NPQTVIALAYFDLD--LY----EPTKAVLEAIRPYLT-KGSIVAFDELD 219 (257)
T ss_dssp ------CTTCCEEEEEECCC--CH----HHHHHHHHHHGGGEE-EEEEEEESSTT
T ss_pred ------CCCCceEEEEEcCc--cc----chHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 01234676665554 24 567889999999999 99999998764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.13 Score=50.74 Aligned_cols=28 Identities=11% Similarity=0.206 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhccCCCcEEEEeccCCCch
Q 045407 255 LVLYFKHVLHALSKKGGIFVMDLYGGTSS 283 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVfDl~gg~s~ 283 (382)
....+.=+.++|+ |||-||+=++-|...
T Consensus 196 ~ElALdfA~~~Lk-pGGsFvVKVFQGsg~ 223 (344)
T 3r24_A 196 FTYLCGFIKQKLA-LGGSIAVKITEHSWN 223 (344)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEECSSSCC
T ss_pred HHHHHHHHHHhCc-CCCEEEEEEecCCCH
Confidence 3556667788999 999999999866543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.35 Score=46.39 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=73.6
Q ss_pred CcccccCCCccHhHH-HHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec-cCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLST-EWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG-NVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~-elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV~~~~~~~~~~~~~~~~ 192 (382)
..|+||||++|-.|. ...+.|.. .|+|+|+-..-- +. ......-+..-|.|.++ ||....
T Consensus 80 ~~VvDLGaapGGWSq~~a~~~g~~-~V~avdvG~~gh----e~-P~~~~s~gwn~v~fk~gvDv~~~~------------ 141 (267)
T 3p8z_A 80 GRVIDLGCGRGGWSYYCAGLKKVT-EVRGYTKGGPGH----EE-PVPMSTYGWNIVKLMSGKDVFYLP------------ 141 (267)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEE-EEEEECCCSTTS----CC-CCCCCCTTTTSEEEECSCCGGGCC------------
T ss_pred CEEEEcCCCCCcHHHHHHHhcCCC-EEEEEecCCCCc----cC-cchhhhcCcCceEEEeccceeecC------------
Confidence 468999999999999 44455554 899999976211 00 00111123345888888 873332
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc--ccCChhHHHHHHHHHHhhccCCC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC--CLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~--yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
..++|.|+|=.-=-+ -..+.+--.++|.-+.+.|+ +
T Consensus 142 ----------------------------------------~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~-~- 179 (267)
T 3p8z_A 142 ----------------------------------------PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLK-N- 179 (267)
T ss_dssp ----------------------------------------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCS-S-
T ss_pred ----------------------------------------CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhcc-c-
Confidence 245888887543211 01111122336666678898 6
Q ss_pred cEEEEeccCCCc--hhhhh-HhhhccCCeE
Q 045407 271 GIFVMDLYGGTS--SEQKL-RLQRRFANFT 297 (382)
Q Consensus 271 GiFVfDl~gg~s--~e~kl-~~~R~~~~~t 297 (382)
|-|++=++.|+. +..++ .+++.|.+..
T Consensus 180 ~~fc~KVl~py~p~v~e~l~~lq~~fgg~l 209 (267)
T 3p8z_A 180 NQFCIKVLNPYMPTVIEHLERLQRKHGGML 209 (267)
T ss_dssp CEEEEEESCCCSHHHHHHHHHHHHHHCCEE
T ss_pred CCEEEEEccCCChhHHHHHHHHHHHhCCEe
Confidence 899999987776 43333 3466666644
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.42 Score=50.79 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=44.7
Q ss_pred CCcccccCCCccHhHHHHHHhC------CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD------SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g------~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+.|+|||||-|-++.-|.+.| .+ .+.++|+|+.+.+-=+.|+. ...++++|+.++
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~-vv~AvE~d~~A~~Ty~~Nhp---------~~~~~~~di~~i 273 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLE-TRWAVDFNSFACQSLKYNHP---------QTEVRNEKADEF 273 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEE-EEEEEESCHHHHHHHHHHCT---------TSEEEESCHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCcee-EEEEEeCCHHHHHHHHHHCC---------CCceecCcHHHh
Confidence 4679999999999999998887 43 68899999999988877752 245677777554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=91.37 E-value=1 Score=38.83 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=57.1
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccc
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLE 206 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (382)
++..|+++|+ +|++++.+++-+.... . .++.++++|+.++.. ..
T Consensus 16 l~~~L~~~g~--~V~~~~R~~~~~~~~~--------~---~~~~~~~~D~~d~~~-~~---------------------- 59 (224)
T 3h2s_A 16 IVAEARRRGH--EVLAVVRDPQKAADRL--------G---ATVATLVKEPLVLTE-AD---------------------- 59 (224)
T ss_dssp HHHHHHHTTC--EEEEEESCHHHHHHHT--------C---TTSEEEECCGGGCCH-HH----------------------
T ss_pred HHHHHHHCCC--EEEEEEeccccccccc--------C---CCceEEecccccccH-hh----------------------
Confidence 3455667774 7999999997764211 1 268899999987761 00
Q ss_pred cchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 207 TSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
...+|+|+.+.-..+--......+...+++.+++++.|+.||+
T Consensus 60 --------------------------~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~ 102 (224)
T 3h2s_A 60 --------------------------LDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVF 102 (224)
T ss_dssp --------------------------HTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred --------------------------cccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEE
Confidence 3457988877644311122344667778888888867777777
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.28 E-value=0.68 Score=44.28 Aligned_cols=42 Identities=12% Similarity=-0.012 Sum_probs=34.1
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||-.|||+ |.+++.+|+.---.+|+++|.+++-+++|++.
T Consensus 192 ~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l 234 (371)
T 1f8f_A 192 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL 234 (371)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence 4688889997 99999999853212699999999999999764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.31 E-value=2.6 Score=37.77 Aligned_cols=59 Identities=15% Similarity=0.052 Sum_probs=41.8
Q ss_pred cccccCC-CccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFC-GTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~C-GTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|+ |.|. ++..|++.|. +|+.+|.+.+.++...+... ..+..++.++++|+.++.
T Consensus 24 ~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~~~~ 86 (266)
T 3o38_A 24 VVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLA----DLGLGRVEAVVCDVTSTE 86 (266)
T ss_dssp EEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH----TTCSSCEEEEECCTTCHH
T ss_pred EEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHH----hcCCCceEEEEeCCCCHH
Confidence 3444454 5543 6777888985 69999999988876665431 223358999999999886
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.62 Score=46.67 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=36.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCC-Ce----EEEEeCCHHHHHHHHHhc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR-RT----AVGLDLDLEALEWCMENN 157 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~-~t----VvGVDLS~emL~~A~e~~ 157 (382)
+.+++|||||.|-++.-|.+.|.. -. |.++|+|+.+...-+.+.
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~ 58 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIH 58 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHH
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHc
Confidence 467899999999999999999831 13 778999999998777765
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.25 E-value=2.9 Score=37.77 Aligned_cols=58 Identities=9% Similarity=-0.058 Sum_probs=43.0
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
++|=-|++.| .++..|+++|. +|++++.+.+-++.+.+... ..+..++.++..|+.++
T Consensus 14 ~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~Dl~~~ 74 (311)
T 3o26_A 14 CAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLK----NSNHENVVFHQLDVTDP 74 (311)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH----TTTCCSEEEEECCTTSC
T ss_pred EEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----hcCCCceEEEEccCCCc
Confidence 4666677666 36778888885 79999999988876665532 22335799999999988
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.04 E-value=2.3 Score=38.45 Aligned_cols=58 Identities=7% Similarity=-0.141 Sum_probs=40.1
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLD------------LEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS------------~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+ .+.++.+.+.... .+.++.+++.|++++.
T Consensus 12 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 12 VVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEK-----TGRKAYTAEVDVRDRA 84 (287)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH-----TTSCEEEEECCTTCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHh-----cCCceEEEEccCCCHH
Confidence 4555566655 36778889995 69999998 6666555443211 1247899999999887
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.52 E-value=2.7 Score=38.10 Aligned_cols=55 Identities=15% Similarity=-0.041 Sum_probs=42.1
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+.+.++...+.. + .++.+++.|+.++.
T Consensus 32 ~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~----~----~~~~~~~~Dl~~~~ 89 (281)
T 3ppi_A 32 SAIVSGGAGGLGEATVRRLHADGL--GVVIADLAAEKGKALADEL----G----NRAEFVSTNVTSED 89 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH----C----TTEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHh----C----CceEEEEcCCCCHH
Confidence 4555677666 36778889995 6999999999887666553 1 37899999999876
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.39 E-value=2.8 Score=37.37 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=39.4
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=-|++.| .++..|++.|. +|+.+|.+++.++...+.. + .++.++++|+.++.
T Consensus 6 vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~ 62 (235)
T 3l6e_A 6 IIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLL----G----NAVIGIVADLAHHE 62 (235)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH----G----GGEEEEECCTTSHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh----c----CCceEEECCCCCHH
Confidence 444455554 36678888885 6999999999887655542 1 25889999999876
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=87.98 E-value=3.1 Score=39.42 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=33.4
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..||=.|+|+ |.+++.+|+.---.+|+++|.|++-+++|++.
T Consensus 181 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 181 DPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 3566678876 99999999864322499999999999999875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=87.69 E-value=1.5 Score=37.73 Aligned_cols=39 Identities=5% Similarity=-0.120 Sum_probs=30.6
Q ss_pred CcccccCC--CccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFC--GTALLSTEWLR-SDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~C--GTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e 155 (382)
.+||-.|+ |.|..++.+++ .| ++|+++|.+++.++.+++
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~ 81 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR 81 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT
T ss_pred CEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 56888884 66888888776 45 479999999999987754
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=87.41 E-value=0.43 Score=53.20 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=46.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+..++|||||.|-++.-|.+.|....|.++|+++.+.+.-+.|+. ...++.+|+.++
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l 596 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP---------GSTVFTEDCNIL 596 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT---------TSEEECSCHHHH
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---------CCccccccHHHH
Confidence 467899999999999999999962268899999999988777752 345788887654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=2.8 Score=38.73 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=38.4
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHH-HHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEA-LEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~em-L~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+.+- ++...+. .. ..+.++.++++|+.++.
T Consensus 49 ~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~-~~----~~~~~~~~~~~Dv~d~~ 110 (291)
T 3ijr_A 49 NVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQY-VE----KEGVKCVLLPGDLSDEQ 110 (291)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHH-HH----TTTCCEEEEESCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHH-HH----hcCCcEEEEECCCCCHH
Confidence 4555676665 36778888985 69999998763 3322222 11 12347899999999876
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=1.6 Score=42.52 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=26.3
Q ss_pred CCccEEEEccchhcccCChhHH--HHHHHHHHhhccCCCcEEEE
Q 045407 234 PARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 234 ~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~pGGiFVf 275 (382)
..+|+|.- |.|.-=.+ .+| ...|+.++++|+ |||+|+-
T Consensus 185 ~~~Da~fl--DgFsP~kN-PeLWs~e~f~~l~~~~~-pgg~laT 224 (308)
T 3vyw_A 185 FKADAVFH--DAFSPYKN-PELWTLDFLSLIKERID-EKGYWVS 224 (308)
T ss_dssp CCEEEEEE--CCSCTTTS-GGGGSHHHHHHHHTTEE-EEEEEEE
T ss_pred cceeEEEe--CCCCcccC-cccCCHHHHHHHHHHhC-CCcEEEE
Confidence 35788754 44443222 233 679999999999 9999985
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.11 E-value=3.1 Score=37.36 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=41.1
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=-|++.| .++..|++.|..++|++++.+++.++...+.. ..++.++++|++++.
T Consensus 5 ~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~~~~ 63 (254)
T 3kzv_A 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY--------GDRFFYVVGDITEDS 63 (254)
T ss_dssp EEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH--------GGGEEEEESCTTSHH
T ss_pred EEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh--------CCceEEEECCCCCHH
Confidence 344455554 25667888886678999999999887666542 137899999999886
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.95 E-value=2.4 Score=38.42 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=42.5
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+.+.++...+.... .+.++.++++|++++.
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTD-----TGRRALSVGTDITDDA 73 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHH
Confidence 4555666665 36778889995 699999999988766554321 1247899999999887
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=86.84 E-value=2.3 Score=38.45 Aligned_cols=55 Identities=4% Similarity=-0.081 Sum_probs=41.6
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.|. ++..|++.|. +|+.+|.+++.++...+.. +.++.++++|+.++.
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~~~~ 67 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEF--------GPRVHALRSDIADLN 67 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH--------GGGEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh--------CCcceEEEccCCCHH
Confidence 45556766653 6778889995 7999999999887665542 137899999999887
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=0.16 Score=61.34 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=13.5
Q ss_pred CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 233 LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
...||+|++.| -||.-.++..++++++..|+ |||.+|+.
T Consensus 1309 ~~~ydlvia~~----vl~~t~~~~~~l~~~~~lL~-p~G~l~~~ 1347 (2512)
T 2vz8_A 1309 LGKADLLVCNC----ALATLGDPAVAVGNMAATLK-EGGFLLLH 1347 (2512)
T ss_dssp ---CCEEEEEC----C---------------------CCEEEEE
T ss_pred CCceeEEEEcc----cccccccHHHHHHHHHHhcC-CCcEEEEE
Confidence 34699999886 56666788999999999999 99998884
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=3.6 Score=36.91 Aligned_cols=48 Identities=4% Similarity=-0.079 Sum_probs=34.1
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.++.+....+.+.+.. ... +..++.++++|++++.
T Consensus 25 ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-~~~---~~~~~~~~~~D~~~~~ 72 (266)
T 3oig_A 25 IARSLHEAGA--RLIFTYAGERLEKSVHELA-GTL---DRNDSIILPCDVTNDA 72 (266)
T ss_dssp HHHHHHHTTC--EEEEEESSGGGHHHHHHHH-HTS---SSCCCEEEECCCSSSH
T ss_pred HHHHHHHCCC--EEEEecCchHHHHHHHHHH-Hhc---CCCCceEEeCCCCCHH
Confidence 7788899995 6999999976555444332 111 2237899999999887
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=86.06 E-value=6 Score=32.43 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=35.6
Q ss_pred cccccCCCc-c-HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGT-A-LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGT-G-~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=+|||. | .++..|.+.|. .|+++|.+++.++.+++. .+..+.||..++.
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~~-----------g~~~i~gd~~~~~ 62 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRER-----------GVRAVLGNAANEE 62 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT-----------TCEEEESCTTSHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHc-----------CCCEEECCCCCHH
Confidence 455556653 2 23344455674 699999999999877653 2567899988776
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=85.56 E-value=2.7 Score=34.08 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=36.2
Q ss_pred cccccCCCc--cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGT--ALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGT--G~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|||. ..++..|++.|. .|+++|.+++.++.+.+. .+.++.+|..++.
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~~-----------~~~~~~gd~~~~~ 61 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLEDE-----------GFDAVIADPTDES 61 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT-----------TCEEEECCTTCHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHC-----------CCcEEECCCCCHH
Confidence 455566654 224445566675 699999999988876653 2467899988876
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.42 E-value=3 Score=37.66 Aligned_cols=61 Identities=11% Similarity=0.000 Sum_probs=40.0
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++.++...+.... ... ...++.++.+|+.++.
T Consensus 8 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~~~~~~~D~~~~~ 71 (278)
T 1spx_A 8 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILA-AGV-SEQNVNSVVADVTTDA 71 (278)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-TTC-CGGGEEEEECCTTSHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-ccc-CCCceeEEecccCCHH
Confidence 3444565544 35667888885 799999999888765443210 011 1247899999999876
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.38 E-value=3.2 Score=37.75 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=40.5
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++.++...+.... .+. ...++.++.+|+.++.
T Consensus 8 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dv~~~~ 71 (280)
T 1xkq_A 8 TVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILK-SGV-SEKQVNSVVADVTTED 71 (280)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT-TTC-CGGGEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHH-cCC-CCcceEEEEecCCCHH
Confidence 3555566555 46677888885 799999999888765443211 000 0127899999999876
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=85.11 E-value=2.4 Score=40.10 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=33.6
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|+|+ |.+++.+|+.---.+|+++|.+++-++++++.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l 210 (352)
T 3fpc_A 168 DTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY 210 (352)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence 4566778887 99999999864322799999999999999875
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=85.09 E-value=3.7 Score=36.08 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=34.5
Q ss_pred HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 126 LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 126 ~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++..|++.|. +|+.+|.+++-++...+.... ....++.++++|+.++.
T Consensus 17 ~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~ 65 (250)
T 2cfc_A 17 AIATRFLARGD--RVAALDLSAETLEETARTHWH----AYADKVLRVRADVADEG 65 (250)
T ss_dssp HHHHHHHHTTC--EEEEEESCHHHHHHHHHHHST----TTGGGEEEEECCTTCHH
T ss_pred HHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHH----hcCCcEEEEEecCCCHH
Confidence 35566778884 799999999887765443211 11247899999999876
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.03 E-value=6.7 Score=35.39 Aligned_cols=58 Identities=9% Similarity=-0.107 Sum_probs=39.1
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEE-eCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGL-DLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGV-DLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.|. ++..|++.|. +|+.+ +.+.+.++...+.... ...++.++++|++++.
T Consensus 28 ~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~ 89 (272)
T 4e3z_A 28 VVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITE-----SGGEAVAIPGDVGNAA 89 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHH-----TTCEEEEEECCTTCHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHh-----cCCcEEEEEcCCCCHH
Confidence 46666766553 6677888885 58776 7787777654443211 1247999999999876
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=84.60 E-value=2.7 Score=39.60 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=33.8
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|+=.|+|+ |.+++.+|+.-...+|+++|.+++-+++|++.
T Consensus 173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l 215 (345)
T 3jv7_A 173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV 215 (345)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 3566678876 99999999863235899999999999999764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=84.32 E-value=7.4 Score=34.97 Aligned_cols=58 Identities=7% Similarity=-0.102 Sum_probs=42.3
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=-|++.| .++..|++.|. +|+.+|.+++.++...+.... .+.++.++++|+.++.
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~ 91 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVA-----AGGEAESHACDLSHSD 91 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHH-----hCCceeEEEecCCCHH
Confidence 4566676655 45677888885 699999999988776655321 1247899999999887
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.19 E-value=4 Score=36.76 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=40.8
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++.++...+..... ....++.++++|+.++.
T Consensus 15 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~ 77 (267)
T 1iy8_A 15 VVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLET---APDAEVLTTVADVSDEA 77 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH---CTTCCEEEEECCTTSHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEEccCCCHH
Confidence 4555666655 46677888885 7999999998877554432110 01246889999999876
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.14 E-value=5.5 Score=36.88 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=40.2
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++.++...+.... .+. ...++.++.+|+.++.
T Consensus 28 ~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~-~~~-~~~~~~~~~~Dv~d~~ 91 (297)
T 1xhl_A 28 SVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILK-AGV-PAEKINAVVADVTEAS 91 (297)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-TTC-CGGGEEEEECCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-cCC-CCceEEEEecCCCCHH
Confidence 3555566555 45677888885 699999999887755443211 110 0127889999999876
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.07 E-value=6.9 Score=35.92 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=41.6
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+.+.++...+.. ..++.++++|++++.
T Consensus 31 ~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~ 88 (277)
T 3gvc_A 31 VAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKI--------GCGAAACRVDVSDEQ 88 (277)
T ss_dssp EEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH--------CSSCEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc--------CCcceEEEecCCCHH
Confidence 4555677666 36788899995 7999999998887665542 136889999999886
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.93 E-value=6.1 Score=35.30 Aligned_cols=54 Identities=11% Similarity=-0.036 Sum_probs=37.9
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=-|++.| .++..|++.|. +|+.+|.+++.++...+.. + .++.++++|+.++.
T Consensus 9 vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~ 65 (253)
T 1hxh_A 9 ALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAEL----G----ERSMFVRHDVSSEA 65 (253)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH----C----TTEEEECCCTTCHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc----C----CceEEEEccCCCHH
Confidence 444555444 35667788885 6999999998876544432 1 36889999998876
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=83.90 E-value=4.4 Score=38.02 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=34.0
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|||+ |.+++.+|+.-- ++|+++|.+++-++++++.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l 209 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRL 209 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHc
Confidence 4566688886 999999998643 5899999999999998764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=83.71 E-value=3.6 Score=39.01 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=33.7
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||-.|||+ |.+++.+|+.---.+|+++|.|++-++++++.
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 215 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 215 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 4677789986 99999999853212799999999999998764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=83.61 E-value=5.3 Score=36.29 Aligned_cols=49 Identities=6% Similarity=-0.170 Sum_probs=37.2
Q ss_pred HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 126 LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 126 ~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++..|++.|. +|+.+|.+++.++-+.+... .+ +..++.+++.||.++.
T Consensus 23 aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~-~~---~~~~~~~~~~Dv~~~~ 71 (256)
T 4fs3_A 23 GVAKVLDQLGA--KLVFTYRKERSRKELEKLLE-QL---NQPEAHLYQIDVQSDE 71 (256)
T ss_dssp HHHHHHHHTTC--EEEEEESSGGGHHHHHHHHG-GG---TCSSCEEEECCTTCHH
T ss_pred HHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH-hc---CCCcEEEEEccCCCHH
Confidence 37788999995 79999999988876655432 12 2347889999999887
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=1.4 Score=45.95 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=31.0
Q ss_pred CCCCcccccCCCccHhHHHHHHhC------------CCCeEEEEeC---CHHHHHHHHH
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSD------------SRRTAVGLDL---DLEALEWCME 155 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g------------~~~tVvGVDL---S~emL~~A~e 155 (382)
+.+.+|+|+|.|||.......+.- .+.+++.+.. +.+-|..|..
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~ 115 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHA 115 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHT
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHH
Confidence 346789999999999877655431 1246899998 6666665443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=83.39 E-value=4 Score=38.54 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=32.7
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCC-eEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRR-TAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~-tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|+|+ |.+++.+|+.-- + +|+++|.+++-++++++.
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~~ 211 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRELAKKV 211 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh
Confidence 4577788875 889999988532 4 799999999999988764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=83.39 E-value=3.2 Score=38.78 Aligned_cols=40 Identities=8% Similarity=0.004 Sum_probs=31.8
Q ss_pred CcccccCC--CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFC--GTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~C--GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
.++|-.|| |.|..++.+++.-- ++|+++|.+++.++.+++
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~ 188 (333)
T 1v3u_A 147 ETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQ 188 (333)
T ss_dssp CEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred CEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHh
Confidence 56888888 77888888887432 489999999999998843
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=83.32 E-value=7.7 Score=34.77 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.9
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++.++...+.. + .++.++++|++++.
T Consensus 10 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~ 67 (259)
T 4e6p_A 10 SALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEI----G----PAAYAVQMDVTRQD 67 (259)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH----C----TTEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh----C----CCceEEEeeCCCHH
Confidence 4555676655 46778889995 6999999998887655542 1 36789999999887
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=83.30 E-value=3.2 Score=37.80 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=39.8
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|+++|. +|+++|.+++.++...+.... . +..++.++.+|+.++.
T Consensus 30 ~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~~~Dl~d~~ 91 (286)
T 1xu9_A 30 KVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLE-L---GAASAHYIAGTMEDMT 91 (286)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-H---TCSEEEEEECCTTCHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHH-h---CCCceEEEeCCCCCHH
Confidence 3555666544 35566788885 799999999888755443211 1 2237889999998876
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.95 E-value=5.8 Score=35.59 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=40.2
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=-|++.| .++..|++.|. +|+.+|.+++.++.+.+...... ...++.++++|+.++.
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~D~~~~~ 71 (267)
T 2gdz_A 9 VALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF---EPQKTLFIQCDVADQQ 71 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS---CGGGEEEEECCTTSHH
T ss_pred EEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhc---CCCceEEEecCCCCHH
Confidence 3555566554 36677888885 79999999987765544321110 1247889999998876
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=82.88 E-value=8.5 Score=35.00 Aligned_cols=54 Identities=7% Similarity=-0.064 Sum_probs=36.0
Q ss_pred cccccCCC----cc-HhHHHHHHhCCCCeEEEEeCCH--HHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCG----TA-LLSTEWLRSDSRRTAVGLDLDL--EALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CG----TG-~LS~elar~g~~~tVvGVDLS~--emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=-|.+ -| .++..|++.|. +|+.+|.+. +.++...+.. .++.++++|++++.
T Consensus 28 ~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~---------~~~~~~~~Dl~~~~ 88 (280)
T 3nrc_A 28 KILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEF---------NPAAVLPCDVISDQ 88 (280)
T ss_dssp EEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGG---------CCSEEEECCTTCHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhc---------CCceEEEeecCCHH
Confidence 45555532 33 37788899995 699999998 4443332221 25789999999876
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=82.82 E-value=2.3 Score=40.06 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=33.5
Q ss_pred CcccccCCCc-cHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDS-RRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~-~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|+|+ |.+++.+|+.-. .++|+++|.|++-++++++.
T Consensus 172 ~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l 215 (344)
T 2h6e_A 172 PVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL 215 (344)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh
Confidence 4677888876 899999998631 25799999999999998764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=82.66 E-value=5.8 Score=36.73 Aligned_cols=58 Identities=17% Similarity=-0.031 Sum_probs=43.2
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|+++|. +|+.+|.+++.++...+.... .+.++.+++.|+.++.
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~ 93 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRG-----QGFDAHGVVCDVRHLD 93 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh-----cCCceEEEEccCCCHH
Confidence 4566677766 47788888995 699999999988776554321 1247899999999876
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.57 E-value=8.1 Score=33.66 Aligned_cols=53 Identities=8% Similarity=-0.131 Sum_probs=36.5
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.|++.| .++..|+++|+ +|+.++.+++.++...+.. .++.++++|+.++.
T Consensus 8 vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~---------~~~~~~~~D~~~~~ 63 (234)
T 2ehd_A 8 VLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAEL---------EGALPLPGDVREEG 63 (234)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh---------hhceEEEecCCCHH
Confidence 444454443 35566777885 7999999998776544432 15788999998876
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=82.57 E-value=6.3 Score=36.88 Aligned_cols=58 Identities=14% Similarity=-0.031 Sum_probs=40.6
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLD------------LEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS------------~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+ .+.|+...+... . .+.++.+++.|+.++.
T Consensus 48 ~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 48 VAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVE----E-QGRRIIARQADVRDLA 120 (317)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHH----H-TTCCEEEEECCTTCHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHH----h-cCCeEEEEECCCCCHH
Confidence 4666677766 47788899995 69999987 666654443321 1 1247899999999887
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=4.2 Score=35.62 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=39.6
Q ss_pred cccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 118 QEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 118 LEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|=-|++.| .++..|++.|. +|+.++.+.+-++...+..... .+.++.++++|++++.
T Consensus 6 lITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~ 65 (235)
T 3l77_A 6 VITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQE----QGVEVFYHHLDVSKAE 65 (235)
T ss_dssp EEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH----HCCCEEEEECCTTCHH
T ss_pred EEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhh----cCCeEEEEEeccCCHH
Confidence 33454444 36778888885 6999999998887665543211 1247899999999887
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.52 E-value=4.8 Score=38.35 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=32.9
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|+|+ |.+++.+|+.---.+|+++|.|++-+++|++.
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l 236 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 236 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh
Confidence 4577778876 89999999864212799999999999998753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.00 E-value=2.3 Score=40.13 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=32.5
Q ss_pred CcccccCC--CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFC--GTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~C--GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
.++|-.|+ |.|.+++.+++.-- ++|+++|.+++.++.+++
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~~~~~~ 212 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRS 212 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHHHHHHH
Confidence 56888998 67888888887432 589999999999988875
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=81.79 E-value=9.7 Score=34.41 Aligned_cols=58 Identities=12% Similarity=-0.078 Sum_probs=38.4
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeC-CHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDL-DLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDL-S~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.|. ++..|++.|. +|+.++. +.+.++...+... . .+.++.+++.|++++.
T Consensus 20 ~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~Dv~~~~ 81 (270)
T 3is3_A 20 VALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIK----A-LGSDAIAIKADIRQVP 81 (270)
T ss_dssp EEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH----H-TTCCEEEEECCTTSHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH----h-cCCcEEEEEcCCCCHH
Confidence 46666777664 6778889995 6998876 4555544333221 1 1247899999999886
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=81.75 E-value=13 Score=31.34 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCCccHhHHHH----HHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 121 FCGTALLSTEW----LRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 121 ~CGTG~LS~el----ar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
-||.|.++..+ .+. |. +|+++|.+++.++.+++. .+..+.+|..++.
T Consensus 44 IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~~-----------g~~~~~gd~~~~~ 95 (183)
T 3c85_A 44 ILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRSE-----------GRNVISGDATDPD 95 (183)
T ss_dssp EECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHHT-----------TCCEEECCTTCHH
T ss_pred EECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHHC-----------CCCEEEcCCCCHH
Confidence 34555555443 445 64 699999999988776643 1346788876654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=81.70 E-value=3.3 Score=39.48 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=33.7
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..||=.|||+ |.+++.+|+.- .++|+++|.+++-+++|++.
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l 232 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL 232 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc
Confidence 4677778876 89999999864 36899999999999998764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=81.69 E-value=4.4 Score=37.92 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=33.2
Q ss_pred CcccccCC--CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFC--GTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~C--GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||-.|| |.|.+++.+++.-- ++|+++|.+++-++++++.
T Consensus 157 ~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~ 199 (345)
T 2j3h_A 157 ETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEKVDLLKTK 199 (345)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH
Confidence 56888887 68899999888532 5899999999999988754
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.66 E-value=2.7 Score=38.00 Aligned_cols=58 Identities=5% Similarity=-0.075 Sum_probs=39.7
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEE-eCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGL-DLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGV-DLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+ +.+.+.++...+... . .+.++.++++|++++.
T Consensus 10 ~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~Dv~~~~ 71 (259)
T 3edm_A 10 TIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIE----K-LGRSALAIKADLTNAA 71 (259)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHH----T-TTSCCEEEECCTTCHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH----h-cCCceEEEEcCCCCHH
Confidence 4555677665 36778889995 68888 777776665544321 1 1247889999999887
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=81.53 E-value=5.7 Score=36.34 Aligned_cols=55 Identities=13% Similarity=-0.044 Sum_probs=41.3
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+.+.++...+.. ..++.+++.|+.++.
T Consensus 7 ~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~~~~ 64 (281)
T 3zv4_A 7 VALITGGASGLGRALVDRFVAEGA--RVAVLDKSAERLRELEVAH--------GGNAVGVVGDVRSLQ 64 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--------BTTEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHc--------CCcEEEEEcCCCCHH
Confidence 3555566665 47788899995 7999999999887655442 137889999999876
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.47 E-value=3.7 Score=37.74 Aligned_cols=59 Identities=10% Similarity=-0.109 Sum_probs=41.2
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++.++...+.... .+...+.++++|+.++.
T Consensus 35 ~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dv~d~~ 96 (281)
T 4dry_A 35 IALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGG----RTGNIVRAVVCDVGDPD 96 (281)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH----HHSSCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh----cCCCeEEEEEcCCCCHH
Confidence 4555676655 36777888885 699999999888765554321 11234689999999887
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=81.33 E-value=10 Score=34.34 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=39.2
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=-|++.| .++..|++.|. +|+++|.+++.++...+..... ...++.++++|++++.
T Consensus 28 ~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~ 89 (302)
T 1w6u_A 28 VAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQ----TGNKVHAIQCDVRDPD 89 (302)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH----HSSCEEEEECCTTCHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh----cCCceEEEEeCCCCHH
Confidence 3444565444 35667788885 7999999998876554432110 0137899999999876
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.22 E-value=9.2 Score=34.77 Aligned_cols=57 Identities=9% Similarity=-0.083 Sum_probs=33.5
Q ss_pred cccccCCC----ccH-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCG----TAL-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CG----TG~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++ -|+ ++..|++.|. +|+.+|.+++ ++...+...... .++.++++|+.++.
T Consensus 23 ~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~-~~~~~~~l~~~~-----~~~~~~~~Dl~~~~ 84 (285)
T 2p91_A 23 RALITGVANERSIAYGIAKSFHREGA--QLAFTYATPK-LEKRVREIAKGF-----GSDLVVKCDVSLDE 84 (285)
T ss_dssp EEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGG-GHHHHHHHHHHT-----TCCCEEECCTTCHH
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHH-HHHHHHHHHHhc-----CCeEEEEcCCCCHH
Confidence 35555653 333 5567788884 7999999985 221111111111 13678999999876
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=80.93 E-value=13 Score=32.62 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=38.1
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=-|++.| .++..|++.|. +|++++.+++.++...+.. ... .++.++++|+.++.
T Consensus 9 vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~~~--~~~~~~~~D~~~~~ 67 (251)
T 1zk4_A 9 AIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSV----GTP--DQIQFFQHDSSDED 67 (251)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH----CCT--TTEEEEECCTTCHH
T ss_pred EEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh----hcc--CceEEEECCCCCHH
Confidence 444555444 35566777885 6999999998776554432 111 37899999998876
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=6.1 Score=37.88 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=33.3
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..||=.|+|+ |.+++.+|+.---.+|+++|.+++-+++|++.
T Consensus 184 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 226 (370)
T 4ej6_A 184 STVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV 226 (370)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 3566678876 99999999854323899999999999998875
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=80.66 E-value=6.7 Score=35.15 Aligned_cols=54 Identities=9% Similarity=-0.175 Sum_probs=37.9
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=-|++.| .++..|++.|. +|+.+|.+++.++...+.. +.++.+++.|+.++.
T Consensus 8 vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 64 (254)
T 1hdc_A 8 VIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATAREL--------GDAARYQHLDVTIEE 64 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT--------GGGEEEEECCTTCHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh--------CCceeEEEecCCCHH
Confidence 444555444 35667888885 7999999998876544431 136889999998876
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=80.64 E-value=1.6 Score=41.22 Aligned_cols=41 Identities=2% Similarity=-0.078 Sum_probs=33.7
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|+|+ |.+++.+|+.-- ++|+++|.|++-++++++.
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l 219 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSM 219 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHHT
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHhc
Confidence 4566688887 999999998643 5899999999999998764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=80.57 E-value=6.1 Score=37.67 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=32.9
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|||+ |.+++.+|+.---.+|+++|.|++-+++|++.
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 239 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 4577778875 89999999864212799999999999988753
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=80.53 E-value=9.6 Score=34.58 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=42.2
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|.+.| .++..|++.|. +|+.+|.+++.++...+.... .+. ...++.++++|++++.
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~-~~~-~~~~~~~~~~Dv~~~~ 76 (281)
T 3svt_A 13 TYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEA-LGA-NGGAIRYEPTDITNED 76 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT-TCC-SSCEEEEEECCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHH-hCC-CCceEEEEeCCCCCHH
Confidence 3555566555 36778888995 699999999988766554321 111 1237999999999886
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.43 E-value=6.6 Score=35.89 Aligned_cols=57 Identities=9% Similarity=-0.095 Sum_probs=39.6
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=-|++.| .++..|++.|. +|+.+|.+++.++...+.. ... . ++.++.+|+.++.
T Consensus 31 ~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l----~~~-~-~~~~~~~Dv~d~~ 90 (276)
T 2b4q_A 31 IALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRL----SAY-G-DCQAIPADLSSEA 90 (276)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH----TTS-S-CEEECCCCTTSHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH----Hhc-C-ceEEEEeeCCCHH
Confidence 3555666555 45667888885 7999999998876544432 111 2 6888999998876
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.42 E-value=10 Score=34.57 Aligned_cols=58 Identities=5% Similarity=-0.215 Sum_probs=41.5
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+.+.++...+.... .+.++.+++.|+.++.
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRD-----AGGTALAQVLDVTDRH 66 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHH-----TTCEEEEEECCTTCHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHH
Confidence 3455566655 36778888995 699999999988766554321 1247889999999876
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=80.39 E-value=2.9 Score=39.49 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=32.8
Q ss_pred CcccccCCC--ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCG--TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CG--TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||-.|+| .|.+++.+++.-+.++|+++|.+++.++++++.
T Consensus 172 ~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~ 215 (347)
T 1jvb_A 172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA 215 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 467888887 778888888763125799999999999988653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=80.34 E-value=6.9 Score=38.89 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=34.6
Q ss_pred cccccCCCccHhHHH----HHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTE----WLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~e----lar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||+=+|| |+++.. |.+.|. .|++||.|++.++.+++. .+.++.||..++.
T Consensus 6 ~viIiG~--Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~~~-----------g~~vi~GDat~~~ 59 (413)
T 3l9w_A 6 RVIIAGF--GRFGQITGRLLLSSGV--KMVVLDHDPDHIETLRKF-----------GMKVFYGDATRMD 59 (413)
T ss_dssp SEEEECC--SHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHHHT-----------TCCCEESCTTCHH
T ss_pred eEEEECC--CHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHhC-----------CCeEEEcCCCCHH
Confidence 3444444 555444 344564 699999999999887754 2457899998876
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=80.33 E-value=3.6 Score=41.45 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=38.1
Q ss_pred CCccHhHHHHHHhC--CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTEWLRSD--SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~elar~g--~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||-|+.+..+|+.- ..+.|+.||-|++.++...++. .+..++||.+++.
T Consensus 9 ~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~----------~~~~i~Gd~~~~~ 59 (461)
T 4g65_A 9 LGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY----------DLRVVNGHASHPD 59 (461)
T ss_dssp ECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS----------SCEEEESCTTCHH
T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc----------CcEEEEEcCCCHH
Confidence 77778777777642 2357999999999998777663 4678999999887
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=80.33 E-value=10 Score=34.17 Aligned_cols=55 Identities=13% Similarity=-0.089 Sum_probs=38.3
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++.++...+.. . .++.++++|+.++.
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~ 66 (260)
T 1nff_A 9 VALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAEL----A----DAARYVHLDVTQPA 66 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT----G----GGEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh----h----cCceEEEecCCCHH
Confidence 3455565554 35667788885 7999999998876554432 1 25788999998876
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.32 E-value=5 Score=37.06 Aligned_cols=58 Identities=9% Similarity=-0.041 Sum_probs=37.6
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCH--HHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDL--EALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~--emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+. +.++...+.. .. .+.++.++++|+.++.
T Consensus 51 ~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~Dv~d~~ 113 (294)
T 3r3s_A 51 KALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALI-EE----CGRKAVLLPGDLSDES 113 (294)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHH-HH----TTCCEEECCCCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHH-HH----cCCcEEEEEecCCCHH
Confidence 4556676655 36778889995 699999873 3343333221 11 1247889999999876
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=80.29 E-value=6.8 Score=37.30 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=32.9
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|+|+ |.+++.+|+.---.+|+++|.+++-+++|++.
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l 235 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 235 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 4577778876 89999999854212799999999999998753
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=80.20 E-value=3.9 Score=39.12 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=32.8
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..||=.|||+ |.+++.+|+.---.+|+++|.+++-+++|++-
T Consensus 195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l 237 (378)
T 3uko_A 195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 237 (378)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence 4566678875 99999999864322799999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 382 | ||||
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-06 |
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 46.6 bits (109), Expect = 2e-06
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 1/119 (0%)
Query: 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV 299
S + DL YFK V + L K+GG+F+ D+ Q L + V
Sbjct: 106 TCCLDSTNYIIDSDDLKKYFKAVSNHL-KEGGVFIFDINSYYKLSQVLGNNDFNYDDDEV 164
Query: 300 WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358
+ E + + + F ++ + R + R + +I+ L+ +
Sbjct: 165 FYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKV 223
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 6/123 (4%)
Query: 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL----YGGTSSEQKLRLQRRFAN 295
+S DL F V AL K GG+F+ D YGG Q+
Sbjct: 109 VTMFFSTIMYFDEEDLRKLFSKVAEAL-KPGGVFITDFPCWFYGGRDGPVVWNEQKGEEK 167
Query: 296 FTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSV 355
+ + +++ L L+ + +++ E++ L E F V
Sbjct: 168 LVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKV 226
Query: 356 HFW 358
+
Sbjct: 227 KIY 229
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.98 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.96 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.89 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.87 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.84 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.8 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.8 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.79 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.79 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.78 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.77 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.76 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.74 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.7 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.66 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.65 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.64 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.58 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.58 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.52 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.49 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.48 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.47 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.47 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.45 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.45 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.44 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.41 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.36 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.36 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.32 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.3 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.3 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.29 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.26 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.25 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.23 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.23 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.21 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.18 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.15 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.14 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.14 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.13 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.13 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.1 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.06 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.04 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.03 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.99 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.99 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.99 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.97 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.87 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.87 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.87 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.82 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.81 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.78 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.78 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.77 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.75 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.71 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.68 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.67 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.65 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.58 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.55 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.5 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.46 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.45 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.4 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.36 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.28 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.26 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.26 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.21 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.2 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.19 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.11 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.06 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.93 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.9 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.85 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.75 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.59 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.56 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.25 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.6 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.52 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.33 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.32 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.13 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.11 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.01 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.85 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.59 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.86 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.57 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.14 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.07 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.87 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.73 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.43 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.27 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.07 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 93.01 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.65 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 91.96 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.91 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 89.96 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.72 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 89.24 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 88.97 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.94 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 87.49 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 86.87 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 86.62 | |
| d1pdoa_ | 129 | IIA domain of mannose transporter, IIA-Man {Escher | 85.72 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 85.15 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.93 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 84.3 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 83.89 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 83.27 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 82.65 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.04 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 81.99 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 81.9 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.72 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 81.11 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 80.97 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 80.86 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 80.79 | |
| d3beda1 | 132 | PTS system, IIA subunit {Enterococcus faecalis [Ta | 80.69 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 80.35 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 80.14 |
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.98 E-value=7.4e-32 Score=244.21 Aligned_cols=217 Identities=16% Similarity=0.154 Sum_probs=166.5
Q ss_pred hHHHHHHhhcC-Chh--hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 83 KFLLYQQSVQS-PKG--DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 83 ~~~LYd~~vq~-p~~--Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
.-.+||.+++. ..+ +++|+.+.+..+ +..|..|||+|||||+++..|+++|. +|+|||+|++||+.|+++...
T Consensus 6 ~A~~YD~l~~~~~~y~~~~~~~~~~~~~~--~~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~ 81 (246)
T d1y8ca_ 6 FAHIYDKLIRADVDYKKWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRS 81 (246)
T ss_dssp HHHHHHHHTTCSCCHHHHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh--CCCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccc
Confidence 35789988764 333 457777777763 45577899999999999999999996 699999999999999988532
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.+.++.++++|++++. + ..+||+|
T Consensus 82 -----~~~~v~~~~~d~~~~~-----------------~----------------------------------~~~fD~i 105 (246)
T d1y8ca_ 82 -----QGLKPRLACQDISNLN-----------------I----------------------------------NRKFDLI 105 (246)
T ss_dssp -----TTCCCEEECCCGGGCC-----------------C----------------------------------SCCEEEE
T ss_pred -----cCccceeeccchhhhc-----------------c----------------------------------ccccccc
Confidence 2347999999998776 2 4579999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHh---hhccCCeEEEEeecccccccceEEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRL---QRRFANFTYVWEQAEFDIIERKTRISL 316 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~---~R~~~~~tyvWeq~~fD~~~~~~ri~L 316 (382)
+|++.+++|+.+.+++.++|++++++|+ |||+||+|+++.......+.. .....++.++|.. .++ ...+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 181 (246)
T d1y8ca_ 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLK-EGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWEN-QFE--DDLVSMYI 181 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEE-EEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEE-EEE--TTEEEEEE
T ss_pred ceeeeeeeccCCHHHHHHHHHHHHHhCC-CCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEee-ccC--CcceeEEE
Confidence 9999999999999999999999999999 999999999753222111100 0112567888876 343 35667788
Q ss_pred EEEeecccceeeeee-eeeEEecCHHHHHHHHHHcCCcEEEEEeccCchh
Q 045407 317 HFHLQKEQKKLRHAF-SYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDA 365 (382)
Q Consensus 317 ~F~~~~~~~~lr~~f-sy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~ 365 (382)
++++.+++ ..++.. ++.+|+|++++|+.+|++|||+.+.+| ..+.+.
T Consensus 182 ~~~~~~~~-~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~-~~~~~~ 229 (246)
T d1y8ca_ 182 SFFVRDGE-FYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKV-DCYSNK 229 (246)
T ss_dssp EEEEECSS-SEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEE-ESSSSC
T ss_pred EEEEecCC-ceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEE-ecCCCC
Confidence 88887776 444433 356799999999999999999999997 344433
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.96 E-value=4.7e-29 Score=223.89 Aligned_cols=218 Identities=19% Similarity=0.267 Sum_probs=158.4
Q ss_pred CchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 81 PSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
+.|..+|...+.+...++.|+++++..+. ...+.+|||+|||||+++..|++.|. .|+|||+|+.||+.|+++...
T Consensus 10 ~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~- 85 (251)
T d1wzna1 10 EYYDTIYRRRIERVKAEIDFVEEIFKEDA-KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKE- 85 (251)
T ss_dssp GGHHHHTHHHHHTHHHHHHHHHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCCCccchhhcccce--EEEEEeecccccccccccccc-
Confidence 46778899999999999999999998864 44467899999999999999999995 699999999999999998532
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
.+.++.++++||++++ + ..+||+|+
T Consensus 86 ----~~~~i~~~~~d~~~l~-----------------~----------------------------------~~~fD~I~ 110 (251)
T d1wzna1 86 ----RNLKIEFLQGDVLEIA-----------------F----------------------------------KNEFDAVT 110 (251)
T ss_dssp ----TTCCCEEEESCGGGCC-----------------C----------------------------------CSCEEEEE
T ss_pred ----ccccchheehhhhhcc-----------------c----------------------------------ccccchHh
Confidence 2347999999998876 2 35799999
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhh--HhhhccCCeEEE-EeecccccccceEEEEEE
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKL--RLQRRFANFTYV-WEQAEFDIIERKTRISLH 317 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl--~~~R~~~~~tyv-Weq~~fD~~~~~~ri~L~ 317 (382)
|.+.++.+++ .+++...|++++++|+ |||+||+|+.+-....... ..........++ +....+++......+...
T Consensus 111 ~~~~~~~~~~-~~~~~~~L~~~~~~Lk-pgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (251)
T d1wzna1 111 MFFSTIMYFD-EEDLRKLFSKVAEALK-PGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRL 188 (251)
T ss_dssp ECSSGGGGSC-HHHHHHHHHHHHHHEE-EEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred hhhhhhhcCC-hHHHHHHHHHHHHHcC-CCcEEEEEeccchhcccccceeeeeecCccceEEEEEeeecchhceeeEEEE
Confidence 9998999875 5688999999999999 9999999986411110000 000111222333 222235555555544433
Q ss_pred EEeecccceee-eeeeeeEEecCHHHHHHHHHHcCCcEEEEEec
Q 045407 318 FHLQKEQKKLR-HAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLR 360 (382)
Q Consensus 318 F~~~~~~~~lr-~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r 360 (382)
+......+..+ ....+.+|+|++.+++ +|++|||+.|++|..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~l~~aGf~~i~~y~~ 231 (251)
T d1wzna1 189 VQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGN 231 (251)
T ss_dssp EEEECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEET
T ss_pred EEEEcCCCcEEEEEeeeEEEcCCHHHHH-HHHHcCCEEEEEEeC
Confidence 33322222333 3344678999999995 899999999999953
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=5.6e-23 Score=191.23 Aligned_cols=224 Identities=11% Similarity=0.112 Sum_probs=137.0
Q ss_pred HHHHHHhhcCChh----hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 84 FLLYQQSVQSPKG----DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 84 ~~LYd~~vq~p~~----Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
-.+|+..+.+... ..+|+..++.... ..+|||+|||||+++..|+++|. .|+|||+|++||+.|+++...
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~l~~~l~~~~----~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~ 100 (292)
T d1xvaa_ 27 ARVWQLYIGDTRSRTAEYKAWLLGLLRQHG----CHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWN 100 (292)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHTT----CCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHhhhcC----CCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHh
Confidence 3567777655433 3466666665532 34699999999999999999995 699999999999999998643
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
........+..+.++|++.++. + + ....+||+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~-------------~--~--------------------------------~~~~~fd~v 133 (292)
T d1xvaa_ 101 RRKEPAFDKWVIEEANWLTLDK-------------D--V--------------------------------PAGDGFDAV 133 (292)
T ss_dssp TTTSHHHHTCEEEECCGGGHHH-------------H--S--------------------------------CCTTCEEEE
T ss_pred cccccccceeeeeecccccccc-------------c--c--------------------------------CCCCCceEE
Confidence 1111011233445555544331 0 0 014679999
Q ss_pred EEccchhcccCC----hhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHh-h-hcc---C----CeEEEEeecccc
Q 045407 240 CAFNYSCCCLHK----RADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRL-Q-RRF---A----NFTYVWEQAEFD 306 (382)
Q Consensus 240 ~afn~S~~yL~~----r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~-~-R~~---~----~~tyvWeq~~fD 306 (382)
+|++.+++||.+ .+++..+|++++++|+ |||+||||+++.......-.. . +.. . .....+. .++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 210 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVL--TVN 210 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEE-EEEEEEEEEECHHHHHHHCCCCTTCCSSBCCCSCEEEEEEEE--ESS
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcC-cCcEEEEeecCHHHHhhcCCCCCceEEEeccCCcceEEEEEe--EEc
Confidence 999999999975 4689999999999999 999999998752211110000 0 000 0 1111121 223
Q ss_pred cccceEEEEEEEEeeccc-c--eeeeeeeeeEEecCHHHHHHHHHHcCCc--EEEEEeccCch
Q 045407 307 IIERKTRISLHFHLQKEQ-K--KLRHAFSYNWRLWSLPEIKDCLEEAGFR--SVHFWLREMPD 364 (382)
Q Consensus 307 ~~~~~~ri~L~F~~~~~~-~--~lr~~fsy~~Rlysl~EI~d~LeeAGF~--~V~v~~r~~~~ 364 (382)
.....+.....+...... . .....|...++.|++.++..+|++|||. .+.+| .++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~lL~~ag~~~~~~~~y-~Df~~ 272 (292)
T d1xvaa_ 211 NKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVL-GDFKP 272 (292)
T ss_dssp SSEEEEEEEEEEEETTCSSSSCCEEEEEEEEECCCCHHHHHHHHHHHTTTCEEEEEE-SSSSB
T ss_pred CCCcEEEEEEEEEEcccccccccceEEEEEEEEecCHHHHHHHHHHhCCCCEEEEEe-cCCCc
Confidence 333333333334332111 0 1122244456778999999999999554 45566 45543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.87 E-value=1.6e-22 Score=180.90 Aligned_cols=190 Identities=13% Similarity=0.219 Sum_probs=125.1
Q ss_pred ChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh--CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcce
Q 045407 94 PKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS--DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRI 169 (382)
Q Consensus 94 p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~--g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI 169 (382)
|-|+. ..+..+...+.. ...+|||+|||||.++..+++. .+.++|+|||+|++||+.|+++... .....++
T Consensus 20 P~Y~~~~~~i~~~~~~~~~--~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~---~~~~~~~ 94 (225)
T d1im8a_ 20 PGYSNIITAIGMLAERFVT--ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA---YHSEIPV 94 (225)
T ss_dssp TTHHHHHHHHHHHHHHHCC--TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT---SCCSSCE
T ss_pred CCHHHHHHHHHHHHHHhcC--CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh---hcccchh
Confidence 54554 455555555432 2357999999999999999985 2456899999999999999997532 1123578
Q ss_pred EEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc
Q 045407 170 SLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL 249 (382)
Q Consensus 170 ~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL 249 (382)
.+.++|+.+++ .+.+|+|+|. ++++|+
T Consensus 95 ~~~~~d~~~~~----------------------------------------------------~~~~d~i~~~-~~l~~~ 121 (225)
T d1im8a_ 95 EILCNDIRHVE----------------------------------------------------IKNASMVILN-FTLQFL 121 (225)
T ss_dssp EEECSCTTTCC----------------------------------------------------CCSEEEEEEE-SCGGGS
T ss_pred hhccchhhccc----------------------------------------------------cccceeeEEe-eecccc
Confidence 89999987665 4678988875 466665
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEE-eccCCC-chhhhhHhhhccCCeEEEEee-cccccccceEEEEEEEEeecccce
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVM-DLYGGT-SSEQKLRLQRRFANFTYVWEQ-AEFDIIERKTRISLHFHLQKEQKK 326 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~-s~e~kl~~~R~~~~~tyvWeq-~~fD~~~~~~ri~L~F~~~~~~~~ 326 (382)
+.++...+|++++++|+ |||+||+ |..... ........... ..|.. ..+.... -. .
T Consensus 122 -~~~d~~~~l~~i~~~Lk-pgG~li~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------~~-~ 180 (225)
T d1im8a_ 122 -PPEDRIALLTKIYEGLN-PNGVLVLSEKFRFEDTKINHLLIDLH-----HQFKRANGYSELE-------------VS-Q 180 (225)
T ss_dssp -CGGGHHHHHHHHHHHEE-EEEEEEEEEECCCSSHHHHHHHHHHH-----HHHHHHTTGGGST-------------TH-H
T ss_pred -ChhhHHHHHHHHHHhCC-CCceeecccccccccchhhhHHHHHH-----HHHHHHcCCCHHH-------------HH-H
Confidence 56788899999999999 9999998 554322 22111111100 00100 0011100 00 0
Q ss_pred eeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEeccC
Q 045407 327 LRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREM 362 (382)
Q Consensus 327 lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~ 362 (382)
.+.+..+..+.++.++++++|++|||+.|++|++.+
T Consensus 181 ~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~ 216 (225)
T d1im8a_ 181 KRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCF 216 (225)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEET
T ss_pred HHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeC
Confidence 011122335789999999999999999999998764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.84 E-value=2.7e-20 Score=169.50 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=124.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|++.+.. .|+|||+|++||+.|++++... ....++.++++|+...+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~-~v~GiD~S~~~l~~A~~r~~~~---~~~~~v~f~~~D~~~~~------------- 87 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNM---KRRFKVFFRAQDSYGRH------------- 87 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHTS---CCSSEEEEEESCTTTSC-------------
T ss_pred cCEEEEecccCcHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHhc---CCCcceEEEEcchhhhc-------------
Confidence 357999999999999999999873 7999999999999999886431 12247999999986554
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ...++||+|+|....+.++.+.+++..+|+.+.++|+ |||+|
T Consensus 88 ----~--------------------------------~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~ 130 (252)
T d1ri5a_ 88 ----M--------------------------------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLR-PGGYF 130 (252)
T ss_dssp ----C--------------------------------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEE
T ss_pred ----c--------------------------------cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeC-CCCEE
Confidence 1 0145799999988666667788999999999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCC--eEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 274 VMDLYGGTSSEQKLRLQRRFAN--FTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~--~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|+++.++......+.. ..+.+ +...++.....+..... ..+|.+.+.. .. ....+...+.+.++++++|
T Consensus 131 i~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~~~---~~---~~E~l~~~~~l~~~~~~~g 201 (252)
T d1ri5a_ 131 IMTVPSRDVILERYKQ-GRMSNDFYKIELEKMEDVPMESVR--EYRFTLLDSV---NN---CIEYFVDFTRMVDGFKRLG 201 (252)
T ss_dssp EEEEECHHHHHHHHHH-TCCBCSSEEEECCCCSSCCTTTCC--EEEEEETTSC---SS---EEEECCCHHHHHHHHHTTT
T ss_pred EEEecCHHHHHHHHHh-cccCCceEEEecccccCCcCcCce--EEEEEccccc---cc---CcccccCHHHHHHHHHHcC
Confidence 9998765443332222 11211 22222222222211111 2233333221 11 1225778999999999999
Q ss_pred CcEEEE
Q 045407 352 FRSVHF 357 (382)
Q Consensus 352 F~~V~v 357 (382)
|+.|..
T Consensus 202 ~~lv~~ 207 (252)
T d1ri5a_ 202 LSLVER 207 (252)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 998875
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1e-19 Score=162.44 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=110.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.++ .+|+|||+|++||+.|++++.. .+..++.|+++|+.+++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~----~~~~~~~f~~~d~~~~~------------- 122 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGE----EGKRVRNYFCCGLQDFT------------- 122 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGG----GGGGEEEEEECCGGGCC-------------
T ss_pred CCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccc----ccccccccccccccccc-------------
Confidence 46799999999999999887776 4899999999999999998643 23347899999998766
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....||+|++.. +++|+.+ +++..+|++++++|+ |||+|
T Consensus 123 -------------------------------------~~~~~fD~I~~~~-~l~h~~~-~~~~~~l~~i~~~Lk-~~G~~ 162 (222)
T d2ex4a1 123 -------------------------------------PEPDSYDVIWIQW-VIGHLTD-QHLAEFLRRCKGSLR-PNGII 162 (222)
T ss_dssp -------------------------------------CCSSCEEEEEEES-CGGGSCH-HHHHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------ccccccccccccc-ccccchh-hhhhhHHHHHHHhcC-CcceE
Confidence 1256799999985 8888766 578899999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++-.+.. ++.. .|.+ .+ +...++.++++.+|++|||+
T Consensus 163 ~i~~~~~-------------~~~~-~~~~-------------------~~----------~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 163 VIKDNMA-------------QEGV-ILDD-------------------VD----------SSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp EEEEEEB-------------SSSE-EEET-------------------TT----------TEEEEBHHHHHHHHHHTTCC
T ss_pred EEEEccc-------------cccc-cccc-------------------CC----------ceeeCCHHHHHHHHHHcCCE
Confidence 9832110 1101 1110 01 12356899999999999999
Q ss_pred EEEEEe
Q 045407 354 SVHFWL 359 (382)
Q Consensus 354 ~V~v~~ 359 (382)
.|+.-.
T Consensus 200 ii~~~~ 205 (222)
T d2ex4a1 200 LLAEER 205 (222)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.80 E-value=1.3e-19 Score=159.92 Aligned_cols=152 Identities=15% Similarity=0.168 Sum_probs=109.2
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
+-+...+|||+|||||.++..|++.|. +|+|||+|++||+.|+++... .+..++.++++|+.+++
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~----~~~~~i~~~~~d~~~l~--------- 76 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEG----NGHQQVEYVQGDAEQMP--------- 76 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHH----TTCCSEEEEECCC-CCC---------
T ss_pred CCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccc----ccccccccccccccccc---------
Confidence 334346899999999999999999995 799999999999999887532 23468999999998776
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
|....||+|+|.. ++.|+.+ ....|++++++|+ |
T Consensus 77 -----------------------------------------~~~~~fD~v~~~~-~l~~~~d---~~~~l~~~~r~Lk-p 110 (231)
T d1vl5a_ 77 -----------------------------------------FTDERFHIVTCRI-AAHHFPN---PASFVSEAYRVLK-K 110 (231)
T ss_dssp -----------------------------------------SCTTCEEEEEEES-CGGGCSC---HHHHHHHHHHHEE-E
T ss_pred -----------------------------------------ccccccccccccc-cccccCC---HHHHHHHHHHhcC-C
Confidence 2356799999986 7777764 5678999999999 9
Q ss_pred CcEEEEeccC--CCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHH
Q 045407 270 GGIFVMDLYG--GTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCL 347 (382)
Q Consensus 270 GGiFVfDl~g--g~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~L 347 (382)
||.|++.-+. .......+ |.. + .+.. ...+.|.|+..++..+|
T Consensus 111 gG~l~i~~~~~~~~~~~~~~------------~~~--~---------------~~~~------~~~~~~~~~~~~~~~~l 155 (231)
T d1vl5a_ 111 GGQLLLVDNSAPENDAFDVF------------YNY--V---------------EKER------DYSHHRAWKKSDWLKML 155 (231)
T ss_dssp EEEEEEEEEEBCSSHHHHHH------------HHH--H---------------HHHH------CTTCCCCCBHHHHHHHH
T ss_pred CcEEEEEeCCCCCCHHHHHH------------HHH--H---------------Hhhc------ccCcccCCCHHHHHHHH
Confidence 9998883221 11111100 000 0 0000 00124788999999999
Q ss_pred HHcCCcEEEE
Q 045407 348 EEAGFRSVHF 357 (382)
Q Consensus 348 eeAGF~~V~v 357 (382)
++|||..+.+
T Consensus 156 ~~aGf~~~~~ 165 (231)
T d1vl5a_ 156 EEAGFELEEL 165 (231)
T ss_dssp HHHTCEEEEE
T ss_pred HHCCCEEEEE
Confidence 9999988764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=2.3e-19 Score=156.39 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
..+.+++.++++|+. ...+|||+|||||.++..+++.|. .|+|+|+|++||+.|+++...+ +..+.++++|
T Consensus 22 ~~~~~~~~~~~~~l~--~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~-----~~~~~~~~~d 92 (226)
T d1ve3a1 22 SRIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGD 92 (226)
T ss_dssp HHHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECC
T ss_pred HHHHHHHHHHHHhcC--CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhccc-----cccccccccc
Confidence 346778888877753 235799999999999999999985 7999999999999999986441 2468899999
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL 255 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL 255 (382)
+.+++ +....||+|+|++ ++.|+.+ .++
T Consensus 93 ~~~l~--------------------------------------------------~~~~~fD~I~~~~-~l~~~~~-~d~ 120 (226)
T d1ve3a1 93 ARKLS--------------------------------------------------FEDKTFDYVIFID-SIVHFEP-LEL 120 (226)
T ss_dssp TTSCC--------------------------------------------------SCTTCEEEEEEES-CGGGCCH-HHH
T ss_pred ccccc--------------------------------------------------ccCcCceEEEEec-chhhCCh-hHH
Confidence 98776 2357799999985 8888754 678
Q ss_pred HHHHHHHHhhccCCCcEEEEeccC
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
.++|+.++++|+ |||+||+.+..
T Consensus 121 ~~~l~~i~~~Lk-pgG~lii~~~~ 143 (226)
T d1ve3a1 121 NQVFKEVRRVLK-PSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred HHHHHHHHHHcC-cCcEEEEEEcC
Confidence 999999999999 99999997753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.79 E-value=1.2e-19 Score=162.50 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+.+.|..+.. +.+|||+|||||.++..+++.|. +|+|||+|++||+.|+++.. ..+.++++|+.+
T Consensus 9 ~~~~~~~~~~~~---~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~ 75 (225)
T d2p7ia1 9 PFMVRAFTPFFR---PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK--------DGITYIHSRFED 75 (225)
T ss_dssp HHHHHHHGGGCC---SSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGG
T ss_pred HHHHHHhhhhCC---CCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccc--------cccccccccccc
Confidence 577777776643 45799999999999999999996 59999999999999998741 258999999866
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
+. + ..+||+|+|. .++-|+.++ ...
T Consensus 76 ~~-----------------~----------------------------------~~~fD~I~~~-~vleh~~d~---~~~ 100 (225)
T d2p7ia1 76 AQ-----------------L----------------------------------PRRYDNIVLT-HVLEHIDDP---VAL 100 (225)
T ss_dssp CC-----------------C----------------------------------SSCEEEEEEE-SCGGGCSSH---HHH
T ss_pred cc-----------------c----------------------------------cccccccccc-ceeEecCCH---HHH
Confidence 55 2 4679999986 588888754 566
Q ss_pred HHHHH-hhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEe
Q 045407 259 FKHVL-HALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRL 337 (382)
Q Consensus 259 Fr~V~-~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rl 337 (382)
++.++ +.|+ |||++++.+.+.......+............|. ... ...-|.|.
T Consensus 101 l~~i~~~~Lk-~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~h~~~ 154 (225)
T d2p7ia1 101 LKRINDDWLA-EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVT--------------------EAE-----FAHGHRCT 154 (225)
T ss_dssp HHHHHHTTEE-EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCC--------------------HHH-----HHTTCCCC
T ss_pred HHHHHHHhcC-CCceEEEEeCCcccHHHHHHHHhhhhhhhhhcC--------------------ccc-----cceeeeec
Confidence 88888 6898 999999988654433221111110000000000 000 01124689
Q ss_pred cCHHHHHHHHHHcCCcEEEE
Q 045407 338 WSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 338 ysl~EI~d~LeeAGF~~V~v 357 (382)
|++++|+.+|+++||+.+++
T Consensus 155 ~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 155 YALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp CCHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHCCCEEEEE
Confidence 99999999999999998874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.1e-18 Score=152.68 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=103.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|||+|||||.++..++ .++|||+|+.||++|++++ +.++++|+.+++
T Consensus 39 ~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~~-----------~~~~~~d~~~l~--------------- 86 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKRG-----------VFVLKGTAENLP--------------- 86 (208)
T ss_dssp CEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHTT-----------CEEEECBTTBCC---------------
T ss_pred eEEEECCCCcccccccc------eEEEEeCChhhcccccccc-----------cccccccccccc---------------
Confidence 59999999999988774 3799999999999999863 678999998776
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+ ...+||+|+|.. ++.|+.+ ...+|++++++|+ |||.+++
T Consensus 87 --~---------------------------------~~~~fD~I~~~~-~l~h~~d---~~~~l~~~~~~L~-pgG~l~i 126 (208)
T d1vlma_ 87 --L---------------------------------KDESFDFALMVT-TICFVDD---PERALKEAYRILK-KGGYLIV 126 (208)
T ss_dssp --S---------------------------------CTTCEEEEEEES-CGGGSSC---HHHHHHHHHHHEE-EEEEEEE
T ss_pred --c---------------------------------cccccccccccc-ccccccc---cccchhhhhhcCC-CCceEEE
Confidence 1 246799999874 8888864 5678999999999 9999999
Q ss_pred eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEE
Q 045407 276 DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSV 355 (382)
Q Consensus 276 Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V 355 (382)
...+..+......... |. .. . +.-+.+.||..+|.++|+++||+.|
T Consensus 127 ~~~~~~~~~~~~~~~~--------~~---------------------~~-~----~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 127 GIVDRESFLGREYEKN--------KE---------------------KS-V----FYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp EEECSSSHHHHHHHHT--------TT---------------------C--C----CSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred EecCCcchhHHhhhhc--------cc---------------------cc-c----ccccccCCCHHHHHHHHHHcCCeEE
Confidence 7665444322111100 00 00 0 0012367999999999999999999
Q ss_pred EEEe
Q 045407 356 HFWL 359 (382)
Q Consensus 356 ~v~~ 359 (382)
.++-
T Consensus 173 ~v~~ 176 (208)
T d1vlma_ 173 KVVQ 176 (208)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=3.4e-19 Score=157.19 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=100.6
Q ss_pred HHHHhhcCChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC
Q 045407 86 LYQQSVQSPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA 163 (382)
Q Consensus 86 LYd~~vq~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~ 163 (382)
-|+...+.+.+.+ .++.+++..+. +.+.+|||+|||||.++..|++.|. +|+|||+|+.||+.|+++...
T Consensus 15 ~Yd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~---- 86 (246)
T d2avna1 15 AYDSMYETPKWKLYHRLIGSFLEEYL--KNPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGVK---- 86 (246)
T ss_dssp HHGGGGCSHHHHHHHHHHHHHHHHHC--CSCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTCS----
T ss_pred HHHHHhccccchHHHHHHHHHHHHhc--CCCCEEEEECCCCchhcccccccce--EEEEeeccccccccccccccc----
Confidence 4666666666654 56666666653 3466899999999999999999985 799999999999999998521
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
.++++|+.+++ +....||+|+|+.
T Consensus 87 ------~~~~~~~~~l~--------------------------------------------------~~~~~fD~ii~~~ 110 (246)
T d2avna1 87 ------NVVEAKAEDLP--------------------------------------------------FPSGAFEAVLALG 110 (246)
T ss_dssp ------CEEECCTTSCC--------------------------------------------------SCTTCEEEEEECS
T ss_pred ------ccccccccccc--------------------------------------------------cccccccceeeec
Confidence 36788987766 2357899999998
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
.++.|+.+. ...|+++++.|+ |||+||+++.+
T Consensus 111 ~~~~~~~d~---~~~l~~i~r~Lk-~gG~~ii~~~~ 142 (246)
T d2avna1 111 DVLSYVENK---DKAFSEIRRVLV-PDGLLIATVDN 142 (246)
T ss_dssp SHHHHCSCH---HHHHHHHHHHEE-EEEEEEEEEEB
T ss_pred chhhhhhhH---HHHHHHHHhhcC-cCcEEEEEECC
Confidence 889988764 457899999999 99999998753
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=6e-19 Score=157.95 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=85.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|++++. +|+|||+|+.||+.|++++.. .+..++.++++|+.+.+
T Consensus 17 ~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~----~~~~~~~~~~~d~~~~~------------- 77 (234)
T d1xxla_ 17 EHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQE----KGVENVRFQQGTAESLP------------- 77 (234)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHH----HTCCSEEEEECBTTBCC-------------
T ss_pred CCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcc----ccccccccccccccccc-------------
Confidence 35799999999999999999984 799999999999999998643 13347999999997765
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
|+.++||+|+|+. ++.|+.+ ...+|++++++|+ |||+|
T Consensus 78 -------------------------------------~~~~~fD~v~~~~-~l~~~~d---~~~~l~~~~r~Lk-pgG~~ 115 (234)
T d1xxla_ 78 -------------------------------------FPDDSFDIITCRY-AAHHFSD---VRKAVREVARVLK-QDGRF 115 (234)
T ss_dssp -------------------------------------SCTTCEEEEEEES-CGGGCSC---HHHHHHHHHHHEE-EEEEE
T ss_pred -------------------------------------ccccccceeeeec-eeecccC---HHHHHHHHHHeeC-CCcEE
Confidence 2357899999975 7777654 5789999999999 99999
Q ss_pred EEe
Q 045407 274 VMD 276 (382)
Q Consensus 274 VfD 276 (382)
++-
T Consensus 116 ~~~ 118 (234)
T d1xxla_ 116 LLV 118 (234)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.76 E-value=4.1e-18 Score=157.08 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|+.-...|+.. .....+.++||+|||||+++..||..++. .|+|||+|+.||+.|+++.. +...+.++++|+
T Consensus 78 d~~~s~~fl~~-l~~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~------~~~~~~~~~~d~ 149 (254)
T d1xtpa_ 78 DIEGSRNFIAS-LPGHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELA------GMPVGKFILASM 149 (254)
T ss_dssp HHHHHHHHHHT-STTCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTT------TSSEEEEEESCG
T ss_pred hHHHHHHHHhh-CCCCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhcccc------ccccceeEEccc
Confidence 44444555554 34445678999999999999999988764 89999999999999999852 234689999999
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
.+++ + ...+||+|+|.. ++.||.+ ++++
T Consensus 150 ~~~~-----------------~---------------------------------~~~~fD~I~~~~-vl~hl~d-~d~~ 177 (254)
T d1xtpa_ 150 ETAT-----------------L---------------------------------PPNTYDLIVIQW-TAIYLTD-ADFV 177 (254)
T ss_dssp GGCC-----------------C---------------------------------CSSCEEEEEEES-CGGGSCH-HHHH
T ss_pred cccc-----------------c---------------------------------CCCccceEEeec-cccccch-hhhH
Confidence 7766 1 246799999986 8888765 5789
Q ss_pred HHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE
Q 045407 257 LYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW 335 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~ 335 (382)
.+|++++++|+ |||+||+ |.... .+ .++|.. . +. .
T Consensus 178 ~~l~~~~~~Lk-pgG~iii~e~~~~-------------~~-~~~~d~--~----------------d~-----------~ 213 (254)
T d1xtpa_ 178 KFFKHCQQALT-PNGYIFFKENCST-------------GD-RFLVDK--E----------------DS-----------S 213 (254)
T ss_dssp HHHHHHHHHEE-EEEEEEEEEEBC---------------C-CEEEET--T----------------TT-----------E
T ss_pred HHHHHHHHhcC-CCcEEEEEecCCC-------------CC-cceecc--c----------------CC-----------c
Confidence 99999999999 9999998 32110 00 112211 0 01 1
Q ss_pred EecCHHHHHHHHHHcCCcEEEEEe
Q 045407 336 RLWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 336 Rlysl~EI~d~LeeAGF~~V~v~~ 359 (382)
..+|.++++++|++|||+.|+...
T Consensus 214 ~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 214 LTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred eeCCHHHHHHHHHHcCCEEEEEEe
Confidence 245889999999999999998754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=8.5e-18 Score=150.43 Aligned_cols=195 Identities=11% Similarity=0.024 Sum_probs=110.8
Q ss_pred HHHHHHHHHhh--CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 99 SYLQKFFLIYV--GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 99 ~yl~~~f~~y~--ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
.|+.+.+.+.. +...+.+|||+|||||.++..+++.+. .+|+|+|+|+.||++|+++.... ... +...++
T Consensus 35 ~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~-----~~~--~~~~~~ 106 (257)
T d2a14a1 35 KFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKE-----PGA--YDWTPA 106 (257)
T ss_dssp HHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTC-----TTC--CCCHHH
T ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhc-----ccc--chhhhH
Confidence 56666555433 233456899999999999998888875 37999999999999999985321 001 100000
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
... +..++..-..-..........+................+..++||+|++.+-.......++++.
T Consensus 107 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~ 173 (257)
T d2a14a1 107 VKF-------------ACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR 173 (257)
T ss_dssp HHH-------------HHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred HHH-------------HHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHH
Confidence 000 0000000000000000000000000000001111112244678999999874444445678999
Q ss_pred HHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEE
Q 045407 257 LYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWR 336 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~R 336 (382)
.+++++++.|+ |||.||+--+.+ ...|.+. . ..+++.
T Consensus 174 ~~l~~i~~~Lk-pGG~li~~~~~~--------------~~~~~~~----------------------~------~~~~~~ 210 (257)
T d2a14a1 174 AALCNLASLLK-PGGHLVTTVTLR--------------LPSYMVG----------------------K------REFSCV 210 (257)
T ss_dssp HHHHHHHTTEE-EEEEEEEEEESS--------------CCEEEET----------------------T------EEEECC
T ss_pred HHHHHHHhccC-CCcEEEEEEecc--------------cccceec----------------------c------cccccc
Confidence 99999999999 999999933211 1111111 0 113345
Q ss_pred ecCHHHHHHHHHHcCCcEEEE
Q 045407 337 LWSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 337 lysl~EI~d~LeeAGF~~V~v 357 (382)
.+++++|+++|++|||+++.+
T Consensus 211 ~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 211 ALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp CCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCHHHHHHHHHHCCCEEEEE
Confidence 789999999999999998887
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.73 E-value=6.6e-18 Score=155.62 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=85.6
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
...+|||+|||||.++..|+++.. .+|+|||+|+.|++.|+++.... + -..+|.++++|+.+++
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~~-g--l~~~v~~~~~d~~~l~------------ 130 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQA-G--LADNITVKYGSFLEIP------------ 130 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHH-T--CTTTEEEEECCTTSCS------------
T ss_pred CCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhcccccc-c--cccccccccccccccc------------
Confidence 346899999999999999998732 47999999999999999986431 1 1248999999998876
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+...+||+|+|.. +++|+.++ ..+|+.++++|+ |||+
T Consensus 131 --------------------------------------~~~~sfD~V~~~~-~l~h~~d~---~~~l~~~~~~Lk-pgG~ 167 (282)
T d2o57a1 131 --------------------------------------CEDNSYDFIWSQD-AFLHSPDK---LKVFQECARVLK-PRGV 167 (282)
T ss_dssp --------------------------------------SCTTCEEEEEEES-CGGGCSCH---HHHHHHHHHHEE-EEEE
T ss_pred --------------------------------------ccccccchhhccc-hhhhccCH---HHHHHHHHHhcC-CCcE
Confidence 2356799999875 88888654 578999999999 9999
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
||+
T Consensus 168 l~~ 170 (282)
T d2o57a1 168 MAI 170 (282)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.70 E-value=4.4e-17 Score=137.92 Aligned_cols=124 Identities=11% Similarity=0.084 Sum_probs=92.4
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc--------CCCCcceEE
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG--------ADGYSRISL 171 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~--------~d~~~RI~l 171 (382)
+++.+|.. ..-..+.+|||+|||||+++..||++|+ +|+|||+|+.||+.|++++...-. ......+.+
T Consensus 8 ~~~~~~~~-l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T d1pjza_ 8 DLQQYWSS-LNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 84 (201)
T ss_dssp HHHHHHHH-HCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred HHHHHHHH-cCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccce
Confidence 45566655 3444456899999999999999999995 799999999999999998633100 001235678
Q ss_pred EeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC
Q 045407 172 FHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK 251 (382)
Q Consensus 172 ~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~ 251 (382)
+++|+.++... ....||+|++.. +++++..
T Consensus 85 ~~~d~~~l~~~-------------------------------------------------~~~~~D~i~~~~-~l~~l~~ 114 (201)
T d1pjza_ 85 WCGDFFALTAR-------------------------------------------------DIGHCAAFYDRA-AMIALPA 114 (201)
T ss_dssp EEECCSSSTHH-------------------------------------------------HHHSEEEEEEES-CGGGSCH
T ss_pred ecccccccccc-------------------------------------------------cccceeEEEEEe-eeEecch
Confidence 88898777610 024689998874 6666554
Q ss_pred hhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 252 RADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 252 r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
++...++++++++|+ |||.|++..+
T Consensus 115 -~~~~~~~~~i~~~Lk-pgG~l~l~~~ 139 (201)
T d1pjza_ 115 -DMRERYVQHLEALMP-QACSGLLITL 139 (201)
T ss_dssp -HHHHHHHHHHHHHSC-SEEEEEEEEE
T ss_pred -hhhHHHHHHHHHhcC-CCcEEEEEEc
Confidence 778999999999999 9999887544
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.69 E-value=2.5e-17 Score=150.57 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=108.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..++++.+..+++|+|+ ++|++.|+++.... ....||.++++|+.++.
T Consensus 81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~---~~~~rv~~~~~D~~~~~------------- 143 (253)
T d1tw3a2 81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE---GLSDRVDVVEGDFFEPL------------- 143 (253)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT---TCTTTEEEEECCTTSCC-------------
T ss_pred CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh---hcccchhhccccchhhc-------------
Confidence 56899999999999999999999999999999 67999999986431 12358999999997654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.++||+|++.+ ++.++ +.++.+..|++++++|+ |||.+
T Consensus 144 ---------------------------------------~~~~D~v~~~~-vlh~~-~d~~~~~~L~~~~~~Lk-PGG~l 181 (253)
T d1tw3a2 144 ---------------------------------------PRKADAIILSF-VLLNW-PDHDAVRILTRCAEALE-PGGRI 181 (253)
T ss_dssp ---------------------------------------SSCEEEEEEES-CGGGS-CHHHHHHHHHHHHHTEE-EEEEE
T ss_pred ---------------------------------------ccchhheeecc-ccccC-CchhhHHHHHHHHHhcC-CCcEE
Confidence 45699998765 55554 45678899999999999 99977
Q ss_pred EE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 274 VM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 Vf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
|+ |........ .. +....+|+ +.....+. +.+|..|++.+|++|||
T Consensus 182 ~i~e~~~~~~~~---------~~----~~~~~~dl---------~~~~~~~g-----------~~rt~~e~~~ll~~AGf 228 (253)
T d1tw3a2 182 LIHERDDLHENS---------FN----EQFTELDL---------RMLVFLGG-----------ALRTREKWDGLAASAGL 228 (253)
T ss_dssp EEEECCBCGGGC---------CS----HHHHHHHH---------HHHHHHSC-----------CCCBHHHHHHHHHHTTE
T ss_pred EEEeccCCCCCc---------ch----hHHHHhhH---------HHHhhCCC-----------cCCCHHHHHHHHHHCCC
Confidence 76 653211000 00 00001111 00000011 45689999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.+++.
T Consensus 229 ~~~~v~ 234 (253)
T d1tw3a2 229 VVEEVR 234 (253)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999876
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=8.4e-17 Score=140.93 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=88.2
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..|.+|||+|||||+++..|+++|. +|+|||+|+.||+.|+++... .+-..+.+..+|+.++.
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~d~~~~~----------- 91 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAA----EGLDNLQTDLVDLNTLT----------- 91 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH----TTCTTEEEEECCTTTCC-----------
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhh----ccccchhhhheeccccc-----------
Confidence 3466899999999999999999996 699999999999999987533 23346889999987766
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
. ..+||+|+|.+ ++.++ .++++..++++++++|+ |||
T Consensus 92 ------~----------------------------------~~~fD~I~~~~-~~~~~-~~~~~~~~l~~~~~~L~-pgG 128 (198)
T d2i6ga1 92 ------F----------------------------------DGEYDFILSTV-VMMFL-EAQTIPGLIANMQRCTK-PGG 128 (198)
T ss_dssp ------C----------------------------------CCCEEEEEEES-CGGGS-CTTHHHHHHHHHHHTEE-EEE
T ss_pred ------c----------------------------------cccccEEEEee-eeecC-CHHHHHHHHHHHHHHcC-CCc
Confidence 1 46799999865 67776 44788999999999999 999
Q ss_pred EEEEecc
Q 045407 272 IFVMDLY 278 (382)
Q Consensus 272 iFVfDl~ 278 (382)
+|++-.+
T Consensus 129 ~~~~~~~ 135 (198)
T d2i6ga1 129 YNLIVAA 135 (198)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9998543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=8.8e-17 Score=144.88 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=83.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..|++... .+|+|||+|+.|+++|+++... .+ -..+|.|+++|+.++.
T Consensus 35 ~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~-~g--l~~~v~~~~~d~~~~~-------------- 96 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEE-LG--VSERVHFIHNDAAGYV-------------- 96 (245)
T ss_dssp CEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHH-TT--CTTTEEEEESCCTTCC--------------
T ss_pred CEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHH-hh--ccccchhhhhHHhhcc--------------
Confidence 5799999999999999998743 5899999999999999998533 11 1247999999997754
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
...+||+|+|.. +++|+.+ ...+|+.++++|+ |||+|+
T Consensus 97 -------------------------------------~~~~fD~v~~~~-~~~~~~d---~~~~l~~~~r~Lk-PGG~l~ 134 (245)
T d1nkva_ 97 -------------------------------------ANEKCDVAACVG-ATWIAGG---FAGAEELLAQSLK-PGGIML 134 (245)
T ss_dssp -------------------------------------CSSCEEEEEEES-CGGGTSS---SHHHHHHHTTSEE-EEEEEE
T ss_pred -------------------------------------ccCceeEEEEEe-hhhccCC---HHHHHHHHHHHcC-cCcEEE
Confidence 146799999986 6677764 5789999999999 999999
Q ss_pred Ee
Q 045407 275 MD 276 (382)
Q Consensus 275 fD 276 (382)
+.
T Consensus 135 i~ 136 (245)
T d1nkva_ 135 IG 136 (245)
T ss_dssp EE
T ss_pred EE
Confidence 94
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.9e-16 Score=142.05 Aligned_cols=206 Identities=10% Similarity=0.024 Sum_probs=114.3
Q ss_pred HHHHHHHHHhh--CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE--Eec
Q 045407 99 SYLQKFFLIYV--GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL--FHG 174 (382)
Q Consensus 99 ~yl~~~f~~y~--ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l--~~g 174 (382)
.++.+.|.... +...+.+|||+|||||.++..++..... +|+|+|+|+.||++|+++.... . ..+.+ +.+
T Consensus 38 ~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~----~-~~~d~~~~~~ 111 (263)
T d2g72a1 38 PWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEE----P-GAFNWSMYSQ 111 (263)
T ss_dssp HHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTC----T-TCCCCHHHHH
T ss_pred hhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcC----c-ccccchhhhh
Confidence 45555554432 4445678999999999998777766654 8999999999999999874321 1 01100 000
Q ss_pred cCC------CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc
Q 045407 175 NVL------QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC 248 (382)
Q Consensus 175 DV~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y 248 (382)
.+. ....+...+ ....+.. +-.+++..... .....+..+.||+|++++.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~~~Dv~~~~~-~~~~~~~~~~fD~V~~~~~l~~i 170 (263)
T d2g72a1 112 HACLIEGKGECWQDKERQ--LRARVKR------------------VLPIDVHQPQP-LGAGSPAPLPADALVSAFCLEAV 170 (263)
T ss_dssp HHHHHHCSCCCHHHHHHH--HHHHEEE------------------EECCCTTSSST-TCSSCSSCSSEEEEEEESCHHHH
T ss_pred hhhhhccccchhhhhHHH--hhhhhhc------------------cccccccCCCc-cccCCcCcCccCeeeeHHHHHHH
Confidence 000 000000000 0000000 00111111110 01111224579999998744333
Q ss_pred cCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeeccccee
Q 045407 249 LHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKL 327 (382)
Q Consensus 249 L~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~l 327 (382)
..++++..++++++++.|+ |||+||+ ++.+. ++.+ .+...
T Consensus 171 ~~~~~~~~~~l~~~~~~Lk-PGG~li~~~~~~~----------------~~~~---------------------~~~~~- 211 (263)
T d2g72a1 171 SPDLASFQRALDHITTLLR-PGGHLLLIGALEE----------------SWYL---------------------AGEAR- 211 (263)
T ss_dssp CSSHHHHHHHHHHHHTTEE-EEEEEEEEEEESC----------------CEEE---------------------ETTEE-
T ss_pred ccCHHHHHHHHHHHHHHcC-CCCEEEEecccCC----------------cccc---------------------cCCcc-
Confidence 3577899999999999999 9999998 43210 1111 01101
Q ss_pred eeeeeeeEEecCHHHHHHHHHHcCCcEEEEEeccCchhhhhccccCcC
Q 045407 328 RHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDAREMRNTEGLG 375 (382)
Q Consensus 328 r~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~~~~~~~~~~~ 375 (382)
|. -.-++.++|+++|++|||+.+.+-....+...+.......|
T Consensus 212 ---~~--~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d~~~ 254 (263)
T d2g72a1 212 ---LT--VVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKG 254 (263)
T ss_dssp ---EE--CCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCE
T ss_pred ---cc--cCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccccce
Confidence 11 12369999999999999998876544444444444333333
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.7e-16 Score=138.47 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-------------ccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-------------VGADG 165 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-------------l~~d~ 165 (382)
.+|.+++..+.......+|||+|||+|+++..||+.|+ +|||||+|+.||+.|++++... .....
T Consensus 31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 45555555555555556899999999999999999996 6999999999999999886421 00112
Q ss_pred CcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch
Q 045407 166 YSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS 245 (382)
Q Consensus 166 ~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S 245 (382)
..++.++++|+.++.. .....||+|.... +
T Consensus 109 ~~~v~~~~~d~~~l~~-------------------------------------------------~~~~~fd~i~~~~-~ 138 (229)
T d2bzga1 109 SGNISLYCCSIFDLPR-------------------------------------------------TNIGKFDMIWDRG-A 138 (229)
T ss_dssp TSSEEEEESCGGGGGG-------------------------------------------------SCCCCEEEEEESS-S
T ss_pred CCcEEEEEcchhhccc-------------------------------------------------cccCceeEEEEEE-E
Confidence 3478899999876651 1146799998865 5
Q ss_pred hcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 246 CCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 246 ~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
+++++ +++...|++.++++|+ |||.|++-.+
T Consensus 139 l~~~~-~~~r~~~~~~~~~~Lk-pgG~~~l~~~ 169 (229)
T d2bzga1 139 LVAIN-PGDRKCYADTMFSLLG-KKFQYLLCVL 169 (229)
T ss_dssp TTTSC-GGGHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred EEecc-chhhHHHHHHHHhhcC-CcceEEEEEc
Confidence 56654 5788999999999999 9999887443
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.58 E-value=3.8e-15 Score=137.17 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=107.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..++++.|..+++|+|+ +++++.|+++... .....|+.+..+|+.++.
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~---~~~~~ri~~~~~d~~~~~------------- 144 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD---AGLADRVTVAEGDFFKPL------------- 144 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH---TTCTTTEEEEECCTTSCC-------------
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhh---cCCcceeeeeeeeccccc-------------
Confidence 45799999999999999999999899999998 7899999887533 122358999999987643
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+|+|++.+ .+-+ .+.++.+..|++++++|+ |||.|
T Consensus 145 ---------------------------------------p~~~D~v~~~~-vLh~-~~d~~~~~lL~~i~~~Lk-pgG~l 182 (256)
T d1qzza2 145 ---------------------------------------PVTADVVLLSF-VLLN-WSDEDALTILRGCVRALE-PGGRL 182 (256)
T ss_dssp ---------------------------------------SCCEEEEEEES-CGGG-SCHHHHHHHHHHHHHHEE-EEEEE
T ss_pred ---------------------------------------cccchhhhccc-cccc-cCcHHHHHHHHHHHhhcC-Cccee
Confidence 34689998876 3333 356788999999999999 99966
Q ss_pred EE-eccCC--CchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHc
Q 045407 274 VM-DLYGG--TSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350 (382)
Q Consensus 274 Vf-Dl~gg--~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeA 350 (382)
|+ |.... ...... + ...+|. ......+ -|.+|..|++++|++|
T Consensus 183 lI~d~~~~~~~~~~~~-------------~-~~~~d~---------~ml~~~~-----------g~~rt~~e~~~ll~~A 228 (256)
T d1qzza2 183 LVLDRADVEGDGADRF-------------F-STLLDL---------RMLTFMG-----------GRVRTRDEVVDLAGSA 228 (256)
T ss_dssp EEEECCH-------HH-------------H-HHHHHH---------HHHHHHS-----------CCCCCHHHHHHHHHTT
T ss_pred EEEEeccCCCCcccHH-------------H-HHHHHH---------HHHhhCC-----------CccCCHHHHHHHHHHC
Confidence 65 75311 000000 0 001111 0000011 1567899999999999
Q ss_pred CCcEEEEEe
Q 045407 351 GFRSVHFWL 359 (382)
Q Consensus 351 GF~~V~v~~ 359 (382)
||+.+++..
T Consensus 229 Gf~~~~~~~ 237 (256)
T d1qzza2 229 GLALASERT 237 (256)
T ss_dssp TEEEEEEEE
T ss_pred CCceeEEEE
Confidence 999999863
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.58 E-value=3.7e-15 Score=138.35 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=84.8
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
-..|.+|||+|||||.++..+++.-+ ..+|+|||+|+.||+.|+++... ...++.|.++|+.+++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~-----~~~~~~f~~~d~~~~~--------- 90 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-----LPYDSEFLEGDATEIE--------- 90 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS-----SSSEEEEEESCTTTCC---------
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc-----cccccccccccccccc---------
Confidence 34588999999999999999998643 36899999999999999998532 2347999999987766
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
+ ..+||+|+|.. ++.|+.++ ...|++++++|+ |
T Consensus 91 --------~----------------------------------~~~fD~v~~~~-~l~~~~d~---~~~l~~~~~~Lk-p 123 (281)
T d2gh1a1 91 --------L----------------------------------NDKYDIAICHA-FLLHMTTP---ETMLQKMIHSVK-K 123 (281)
T ss_dssp --------C----------------------------------SSCEEEEEEES-CGGGCSSH---HHHHHHHHHTEE-E
T ss_pred --------c----------------------------------cCCceEEEEeh-hhhcCCCH---HHHHHHHHHHcC-c
Confidence 2 35699999886 67777654 568999999999 9
Q ss_pred CcEEEE
Q 045407 270 GGIFVM 275 (382)
Q Consensus 270 GGiFVf 275 (382)
||.||+
T Consensus 124 gG~lii 129 (281)
T d2gh1a1 124 GGKIIC 129 (281)
T ss_dssp EEEEEE
T ss_pred CcEEEE
Confidence 998876
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.6e-14 Score=133.24 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=80.8
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+..|||+|||||.++..|++.++..+|+|||+|+.||++|+++. .++.++++|+.+++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---------~~~~~~~~d~~~l~----------- 142 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRLP----------- 142 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSCS-----------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---------ccccceeeehhhcc-----------
Confidence 3467899999999999999999998889999999999999999874 36899999998877
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+ ....||+|+++. +..+ ++.++++|+ |||
T Consensus 143 ------~---------------------------------~~~sfD~v~~~~-~~~~----------~~e~~rvLk-pgG 171 (268)
T d1p91a_ 143 ------F---------------------------------SDTSMDAIIRIY-APCK----------AEELARVVK-PGG 171 (268)
T ss_dssp ------B---------------------------------CTTCEEEEEEES-CCCC----------HHHHHHHEE-EEE
T ss_pred ------C---------------------------------CCCCEEEEeecC-CHHH----------HHHHHHHhC-CCc
Confidence 2 356799999864 3322 456888999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
+||+-..+
T Consensus 172 ~l~~~~p~ 179 (268)
T d1p91a_ 172 WVITATPG 179 (268)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeeC
Confidence 99997654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.1e-14 Score=129.29 Aligned_cols=108 Identities=9% Similarity=-0.055 Sum_probs=81.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.++ .+|+|||+|+.||+.|+++... ...++.++.+|+.....
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~------------ 115 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-----QTHKVIPLKGLWEDVAP------------ 115 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-----CSSEEEEEESCHHHHGG------------
T ss_pred CCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhh-----ccccccccccccccccc------------
Confidence 45799999999999999999875 4799999999999999998632 23578888888644330
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE-ccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA-FNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a-fn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+...+||+|+. ...+...++...+...+|++++++|+ |||+
T Consensus 116 ------------------------------------~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lk-pGG~ 158 (229)
T d1zx0a1 116 ------------------------------------TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGV 158 (229)
T ss_dssp ------------------------------------GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEE
T ss_pred ------------------------------------ccccccccceeecccccccccccccCHHHHHHHHHHHcC-CCcE
Confidence 123467888863 22233334445678889999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
|++.
T Consensus 159 ~~~~ 162 (229)
T d1zx0a1 159 LTYC 162 (229)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9983
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=3.7e-14 Score=134.27 Aligned_cols=119 Identities=11% Similarity=0.010 Sum_probs=90.7
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
-+..+..+ ++-....+|||+|||.|.++..+|++-. .+|+||+||++.+++|++++.. ++ ...++.+...|.+.+
T Consensus 49 k~~~~~~~-l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~-~~--l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 49 KRKLALDK-LNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDE-VD--SPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHHT-TCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHH-SC--CSSCEEEEECCGGGC
T ss_pred HHHHHHHh-cCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHh-hc--cchhhhhhhhccccc
Confidence 34444443 4433346899999999999999986643 5899999999999999998654 11 234788888776432
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh------h
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR------A 253 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r------~ 253 (382)
.++||.|+|.. ++.++.+. +
T Consensus 124 -----------------------------------------------------~~~fD~i~sie-~~eH~~~~~~~~~~~ 149 (291)
T d1kpia_ 124 -----------------------------------------------------DEPVDRIVSLG-AFEHFADGAGDAGFE 149 (291)
T ss_dssp -----------------------------------------------------CCCCSEEEEES-CGGGTTCCSSCCSTT
T ss_pred -----------------------------------------------------ccccceEeech-hHHhcchhhhhhHHH
Confidence 36799999997 77888764 4
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecc
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
-...+|+.|++.|+ |||.|++-..
T Consensus 150 ~~~~~f~~i~~~Lk-pgG~~~l~~i 173 (291)
T d1kpia_ 150 RYDTFFKKFYNLTP-DDGRMLLHTI 173 (291)
T ss_dssp HHHHHHHHHHHTSC-TTCEEEEEEE
T ss_pred HHHHHHHHHHHhCC-CCCceEEEEE
Confidence 67899999999999 9999999543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=2.3e-13 Score=119.28 Aligned_cols=109 Identities=11% Similarity=0.038 Sum_probs=83.3
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...+.+|||+|||||.++..+++.++ .|+|+|+|+.|+++|+++... .+ -...++.++++|+.++.
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~-~~-l~~~~i~~~~~d~~~~~---------- 115 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKL-NN-LDNYDIRVVHSDLYENV---------- 115 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHH-TT-CTTSCEEEEECSTTTTC----------
T ss_pred cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHH-hC-CccceEEEEEcchhhhh----------
Confidence 33456899999999999999999886 699999999999999987532 11 12347999999987633
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
....||+|++- .. |....+.+..+++++.++|+ ||
T Consensus 116 -----------------------------------------~~~~fD~Ii~~-~p--~~~~~~~~~~~l~~~~~~Lk-pg 150 (194)
T d1dusa_ 116 -----------------------------------------KDRKYNKIITN-PP--IRAGKEVLHRIIEEGKELLK-DN 150 (194)
T ss_dssp -----------------------------------------TTSCEEEEEEC-CC--STTCHHHHHHHHHHHHHHEE-EE
T ss_pred -----------------------------------------ccCCceEEEEc-cc--EEecchhhhhHHHHHHHhcC-cC
Confidence 14679999963 22 22444556789999999999 99
Q ss_pred cEEEEecc
Q 045407 271 GIFVMDLY 278 (382)
Q Consensus 271 GiFVfDl~ 278 (382)
|++++-+.
T Consensus 151 G~l~i~~~ 158 (194)
T d1dusa_ 151 GEIWVVIQ 158 (194)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEe
Confidence 99877443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.7e-13 Score=128.48 Aligned_cols=117 Identities=11% Similarity=0.095 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.-+..++.+ ++-....+|||+|||+|.++..+++... .+|+|||||++++++|+++... ..-..++.+...|.++
T Consensus 39 ~k~~~~~~~-l~l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~---~~l~~~~~~~~~d~~~ 113 (280)
T d2fk8a1 39 AKVDLNLDK-LDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLAS---IDTNRSRQVLLQGWED 113 (280)
T ss_dssp HHHHHHHTT-SCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHT---SCCSSCEEEEESCGGG
T ss_pred HHHHHHHHH-cCCCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHh---hccccchhhhhhhhhh
Confidence 345555544 3333346899999999999999997743 4899999999999999998643 1123467777777654
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
++ .+||.|++.. .+.++.. ..+..+
T Consensus 114 ~~-----------------------------------------------------~~fD~i~si~-~~eh~~~-~~~~~~ 138 (280)
T d2fk8a1 114 FA-----------------------------------------------------EPVDRIVSIE-AFEHFGH-ENYDDF 138 (280)
T ss_dssp CC-----------------------------------------------------CCCSEEEEES-CGGGTCG-GGHHHH
T ss_pred hc-----------------------------------------------------cchhhhhHhh-HHHHhhh-hhHHHH
Confidence 33 5799999986 6777765 578999
Q ss_pred HHHHHhhccCCCcEEEEe
Q 045407 259 FKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfD 276 (382)
|+.+++.|+ |||+|++-
T Consensus 139 f~~i~~~Lk-pgG~~~i~ 155 (280)
T d2fk8a1 139 FKRCFNIMP-ADGRMTVQ 155 (280)
T ss_dssp HHHHHHHSC-TTCEEEEE
T ss_pred HHHHHhccC-CCceEEEE
Confidence 999999999 99999994
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3e-14 Score=130.24 Aligned_cols=160 Identities=11% Similarity=0.103 Sum_probs=101.2
Q ss_pred CCcccccCCCccHhHHHHHHh------CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhccc
Q 045407 114 PLHLQEDFCGTALLSTEWLRS------DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~------g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
..+|||+|||||.++..+++. +...+++|||+|+.||+.|+++... ...-....+.+.+.+..+...
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~------ 113 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK-ISNLENVKFAWHKETSSEYQS------ 113 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTT-CCSCTTEEEEEECSCHHHHHH------
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhh-ccccccccccchhhhhhhhcc------
Confidence 347999999999998887664 2223689999999999999998532 111112233444443322110
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
. ....+...+||+|+|.+ ++.|+. +...+++++++.|+
T Consensus 114 -------------------------~-------------~~~~~~~~~fD~I~~~~-~l~~~~---d~~~~l~~l~~~Lk 151 (280)
T d1jqea_ 114 -------------------------R-------------MLEKKELQKWDFIHMIQ-MLYYVK---DIPATLKFFHSLLG 151 (280)
T ss_dssp -------------------------H-------------HTTSSSCCCEEEEEEES-CGGGCS---CHHHHHHHHHHTEE
T ss_pred -------------------------h-------------hcccCCCCceeEEEEcc-ceecCC---CHHHHHHHHHhhCC
Confidence 0 00112357899999986 566655 45789999999999
Q ss_pred CCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHH
Q 045407 268 KKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCL 347 (382)
Q Consensus 268 ~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~L 347 (382)
|||++++-++.+.+...++... .|.. + ..+. +...|+..++..+|
T Consensus 152 -pgG~l~i~~~~~~~~~~~l~~~--------~~~~--~---------------~~~~---------~~~~~~~~~~~~~L 196 (280)
T d1jqea_ 152 -TNAKMLIIVVSGSSGWDKLWKK--------YGSR--F---------------PQDD---------LCQYITSDDLTQML 196 (280)
T ss_dssp -EEEEEEEEEECTTSHHHHHHHH--------HGGG--S---------------CCCT---------TSCCCCHHHHHHHH
T ss_pred -CCCEEEEEEecCcchHHHHHHH--------HHHh--c---------------CCCc---------ccccCCHHHHHHHH
Confidence 9999999776554443322110 1221 0 0111 01467889999999
Q ss_pred HHcCCcEEEE
Q 045407 348 EEAGFRSVHF 357 (382)
Q Consensus 348 eeAGF~~V~v 357 (382)
+++||..+..
T Consensus 197 ~~~G~~~~~~ 206 (280)
T d1jqea_ 197 DNLGLKYECY 206 (280)
T ss_dssp HHHTCCEEEE
T ss_pred HHCCCceEEE
Confidence 9999986543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=1.3e-13 Score=129.97 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=84.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||.|.++..+|+.-. .+|+||+||++.+++|+++..+ +....++.+..+|.++++
T Consensus 64 ~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~---~g~~~~v~~~~~d~~~~~-------------- 125 (285)
T d1kpga_ 64 MTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVAN---SENLRSKRVLLAGWEQFD-------------- 125 (285)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHT---CCCCSCEEEEESCGGGCC--------------
T ss_pred CEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHh---hhhhhhhHHHHhhhhccc--------------
Confidence 5899999999999999888753 6999999999999999998643 122357899999976544
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
.+||.|+|.. ++.++.. .....+|+.|++.|+ |||.|+
T Consensus 126 ---------------------------------------~~fD~i~si~-~~eh~~~-~~~~~~~~~~~r~Lk-pgG~~~ 163 (285)
T d1kpga_ 126 ---------------------------------------EPVDRIVSIG-AFEHFGH-ERYDAFFSLAHRLLP-ADGVML 163 (285)
T ss_dssp ---------------------------------------CCCSEEEEES-CGGGTCT-TTHHHHHHHHHHHSC-TTCEEE
T ss_pred ---------------------------------------ccccceeeeh-hhhhcCc-hhHHHHHHHHHhhcC-CCCcEE
Confidence 5699999976 7777765 456789999999998 999999
Q ss_pred Ee
Q 045407 275 MD 276 (382)
Q Consensus 275 fD 276 (382)
+-
T Consensus 164 l~ 165 (285)
T d1kpga_ 164 LH 165 (285)
T ss_dssp EE
T ss_pred EE
Confidence 83
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.44 E-value=1.4e-13 Score=120.12 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=80.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...|||+|||||.+|..+|+.+. +|+|+|+|++||+.|++|... .+ -..+|.++++|+.++.
T Consensus 34 g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~-~g--l~~~v~~~~gda~~~~------------- 95 (186)
T d1l3ia_ 34 NDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQR-HG--LGDNVTLMEGDAPEAL------------- 95 (186)
T ss_dssp TCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHH-TT--CCTTEEEEESCHHHHH-------------
T ss_pred CCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHH-cC--CCcceEEEECchhhcc-------------
Confidence 35799999999999999999874 799999999999999998533 11 1248999999976554
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+..+.||+|++.-.. ..+..+++.+.++|+ |||.+
T Consensus 96 -------------------------------------~~~~~~D~v~~~~~~-------~~~~~~~~~~~~~Lk-pgG~l 130 (186)
T d1l3ia_ 96 -------------------------------------CKIPDIDIAVVGGSG-------GELQEILRIIKDKLK-PGGRI 130 (186)
T ss_dssp -------------------------------------TTSCCEEEEEESCCT-------TCHHHHHHHHHHTEE-EEEEE
T ss_pred -------------------------------------cccCCcCEEEEeCcc-------ccchHHHHHHHHHhC-cCCEE
Confidence 124679999876422 345678999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+...
T Consensus 131 vi~~~ 135 (186)
T d1l3ia_ 131 IVTAI 135 (186)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 98654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=1.6e-13 Score=127.68 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=76.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.+++.+++.|. +|+|||+|+.||+.|++|... .+.++.++++|+.++.
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~-----n~~~~~~~~~d~~~~~------------- 180 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKR-----NGVRPRFLEGSLEAAL------------- 180 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHH-----TTCCCEEEESCHHHHG-------------
T ss_pred cCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHH-----cCCceeEEeccccccc-------------
Confidence 35799999999999999999985 699999999999999998532 2246778998874332
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+||+|+|.. + ...+...++.++++|+ |||+|
T Consensus 181 --------------------------------------~~~~fD~V~ani-----~--~~~l~~l~~~~~~~Lk-pGG~l 214 (254)
T d2nxca1 181 --------------------------------------PFGPFDLLVANL-----Y--AELHAALAPRYREALV-PGGRA 214 (254)
T ss_dssp --------------------------------------GGCCEEEEEEEC-----C--HHHHHHHHHHHHHHEE-EEEEE
T ss_pred --------------------------------------cccccchhhhcc-----c--cccHHHHHHHHHHhcC-CCcEE
Confidence 146799999731 1 2467788899999999 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
|+
T Consensus 215 il 216 (254)
T d2nxca1 215 LL 216 (254)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.36 E-value=9.7e-13 Score=121.26 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=116.0
Q ss_pred CCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 80 MPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 80 ~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
.|..-..|.+.|.+... .....++..|..-....+|+|+|||+|.+++.++++.|..+++.+|| |++++ ..
T Consensus 50 ~p~~~~~F~~aM~~~s~--~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~----~~-- 120 (244)
T d1fp1d2 50 DKKMNQIFNKSMVDVCA--TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE----NA-- 120 (244)
T ss_dssp CHHHHHHHHHHHHHHHH--HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT----TC--
T ss_pred CHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh----cc--
Confidence 46666777777743222 22344444443223346899999999999999999999999999998 44442 21
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
....||.++.+|+.++. +..|+|
T Consensus 121 ----~~~~ri~~~~gd~~~~~-----------------------------------------------------p~~D~~ 143 (244)
T d1fp1d2 121 ----PPLSGIEHVGGDMFASV-----------------------------------------------------PQGDAM 143 (244)
T ss_dssp ----CCCTTEEEEECCTTTCC-----------------------------------------------------CCEEEE
T ss_pred ----CCCCCeEEecCCccccc-----------------------------------------------------ccceEE
Confidence 12358999999986543 455998
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-ecc-C---CCchhhhhHhhhccCCeEEEEeecccccccceEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLY-G---GTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRI 314 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~-g---g~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri 314 (382)
+..+-.+. .+.++.++.|++++++|+ |||.+|+ |.. + .......+ .. .+|.
T Consensus 144 ~l~~vLh~--~~de~~~~iL~~~~~aL~-pgg~llI~e~v~~~~~~~~~~~~~--~~------------~~d~------- 199 (244)
T d1fp1d2 144 ILKAVCHN--WSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKL--VS------------TLDN------- 199 (244)
T ss_dssp EEESSGGG--SCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHH--HH------------HHHH-------
T ss_pred EEehhhhh--CCHHHHHHHHHHHHHHcC-CCcEEEEEEEEecCCCCCchHHHH--HH------------HHHH-------
Confidence 87654444 467889999999999999 8997666 643 1 11111100 00 1111
Q ss_pred EEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEe
Q 045407 315 SLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWL 359 (382)
Q Consensus 315 ~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~ 359 (382)
+..+.-+. |.+|..|++++|++|||+.++|+.
T Consensus 200 --~m~~~~~g-----------~ert~~e~~~ll~~AGF~~v~v~~ 231 (244)
T d1fp1d2 200 --LMFITVGG-----------RERTEKQYEKLSKLSGFSKFQVAC 231 (244)
T ss_dssp --HHHHHHSC-----------CCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred --HHHhhCCC-----------cCCCHHHHHHHHHHcCCCceEEEe
Confidence 00000111 345799999999999999999974
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=9.7e-13 Score=124.28 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=95.6
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC
Q 045407 84 FLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA 163 (382)
Q Consensus 84 ~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~ 163 (382)
+.+....++|..--..|...+.+... -....+|||+|||||.||..+|+.|.. .|+|+|.|+ |+..|+++....
T Consensus 10 ~~~h~~ml~D~~r~~~y~~aI~~~~~-~~~~~~VLDlGcGtG~ls~~aa~~Ga~-~V~avd~s~-~~~~a~~~~~~~--- 83 (328)
T d1g6q1_ 10 YGIHEEMLQDTVRTLSYRNAIIQNKD-LFKDKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSS-IIEMAKELVELN--- 83 (328)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH-HHTTCEEEEETCTTSHHHHHHHHTCCS-EEEEEESST-HHHHHHHHHHHT---
T ss_pred chHHHHHhCCHHHHHHHHHHHHhccc-cCCcCEEEEeCCCCCHHHHHHHHhCCC-EEEEEeCCH-HHHHHHHHHHHh---
Confidence 34445555665544556555543211 111347999999999999999999974 899999996 777887764331
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
....+|.++++|+.++. + +.++||+|++-.
T Consensus 84 ~~~~~i~~i~~~~~~l~-----------------~---------------------------------~~~~~D~i~se~ 113 (328)
T d1g6q1_ 84 GFSDKITLLRGKLEDVH-----------------L---------------------------------PFPKVDIIISEW 113 (328)
T ss_dssp TCTTTEEEEESCTTTSC-----------------C---------------------------------SSSCEEEEEECC
T ss_pred CccccceEEEeehhhcc-----------------C---------------------------------cccceeEEEEEe
Confidence 12357999999998776 2 246799999854
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
..+++.....+...+..+.+.|+ |||++|-+
T Consensus 114 -~~~~~~~e~~~~~~~~a~~r~Lk-pgG~iiP~ 144 (328)
T d1g6q1_ 114 -MGYFLLYESMMDTVLYARDHYLV-EGGLIFPD 144 (328)
T ss_dssp -CBTTBSTTCCHHHHHHHHHHHEE-EEEEEESC
T ss_pred -cceeeccchhHHHHHHHHHhccC-CCeEEEee
Confidence 34456666778888888889999 99998753
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.32 E-value=3e-12 Score=116.96 Aligned_cols=104 Identities=9% Similarity=0.051 Sum_probs=82.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||..+..+++.++...|+|||+|+.||+.|++++. ....+..+.+|.+.+..
T Consensus 76 ~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~------~~~ni~~i~~d~~~~~~------------- 136 (230)
T d1g8sa_ 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA------ERENIIPILGDANKPQE------------- 136 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT------TCTTEEEEECCTTCGGG-------------
T ss_pred CEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh------hhcccceEEEeeccCcc-------------
Confidence 47999999999999999999988899999999999999998852 23467788888877761
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
+....+|+++++++. +...+...+++++++.|+ |||.|+
T Consensus 137 ------------------------------------~~~~~~~v~~i~~~~----~~~~~~~~~l~~~~r~LK-pgG~~~ 175 (230)
T d1g8sa_ 137 ------------------------------------YANIVEKVDVIYEDV----AQPNQAEILIKNAKWFLK-KGGYGM 175 (230)
T ss_dssp ------------------------------------GTTTCCCEEEEEECC----CSTTHHHHHHHHHHHHEE-EEEEEE
T ss_pred ------------------------------------cccccceeEEeeccc----cchHHHHHHHHHHHHhcc-cCceEE
Confidence 113346776666543 234677888999999999 999999
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+.+.
T Consensus 176 i~~k 179 (230)
T d1g8sa_ 176 IAIK 179 (230)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=3.9e-12 Score=119.68 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=80.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+|+.|.. +|+|||+|+.| ..|+++... ..-..+|.++++|+.++.
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~-~~a~~~~~~---n~~~~~v~~~~~~~~~~~-------------- 95 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSIS-DYAVKIVKA---NKLDHVVTIIKGKVEEVE-------------- 95 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTH-HHHHHHHHH---TTCTTTEEEEESCTTTCC--------------
T ss_pred CEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHH-hhhhhHHHH---hCCccccceEeccHHHcc--------------
Confidence 46999999999999999999974 89999999865 445443221 011347999999998876
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
+ ...+||+|++-. ...++..+..+..++..+.+.|+ |||++|
T Consensus 96 ---~---------------------------------~~~~~D~ivs~~-~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii 137 (316)
T d1oria_ 96 ---L---------------------------------PVEKVDIIISEW-MGYCLFYESMLNTVLHARDKWLA-PDGLIF 137 (316)
T ss_dssp ---C---------------------------------SSSCEEEEEECC-CBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred ---c---------------------------------ccceeEEEeeee-eeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence 2 246799999864 44556777788899999999999 999998
Q ss_pred E
Q 045407 275 M 275 (382)
Q Consensus 275 f 275 (382)
.
T Consensus 138 P 138 (316)
T d1oria_ 138 P 138 (316)
T ss_dssp S
T ss_pred e
Confidence 5
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=6.3e-12 Score=117.45 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=87.3
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC
Q 045407 85 LLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD 164 (382)
Q Consensus 85 ~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d 164 (382)
.+.+..+.|..---.|.+.+.+. ..-....+|||+|||||.++..+|+.|.. +|+|+|+|+.|+.. ++.+.. ..
T Consensus 8 ~~h~~ml~D~~r~~~y~~ai~~~-~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~-~V~aid~s~~~~~a-~~~~~~---~~ 81 (311)
T d2fyta1 8 GIHEEMLKDKIRTESYRDFIYQN-PHIFKDKVVLDVGCGTGILSMFAAKAGAK-KVLGVDQSEILYQA-MDIIRL---NK 81 (311)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC-GGGTTTCEEEEETCTTSHHHHHHHHTTCS-EEEEEESSTHHHHH-HHHHHH---TT
T ss_pred hHHHHHhCCHHHHHHHHHHHHhc-cccCCcCEEEEECCCCCHHHHHHHHcCCC-EEEEEeCHHHHHHH-HHHHHH---hC
Confidence 33344434333333454444432 11112357999999999999999999974 89999999988754 333222 11
Q ss_pred CCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccc
Q 045407 165 GYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNY 244 (382)
Q Consensus 165 ~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~ 244 (382)
...+|.++++|+.++. + ...+||+|++-..
T Consensus 82 ~~~~i~~~~~~~~~l~-----------------~---------------------------------~~~~~D~Ivse~~ 111 (311)
T d2fyta1 82 LEDTITLIKGKIEEVH-----------------L---------------------------------PVEKVDVIISEWM 111 (311)
T ss_dssp CTTTEEEEESCTTTSC-----------------C---------------------------------SCSCEEEEEECCC
T ss_pred CCccceEEEeeHHHhc-----------------C---------------------------------ccccceEEEEeee
Confidence 2358999999998876 2 2467999998543
Q ss_pred hhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 245 SCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 245 S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.. ++.....+..++....+.|+ |||++|.
T Consensus 112 ~~-~~~~e~~~~~~~~a~~~~Lk-p~G~iip 140 (311)
T d2fyta1 112 GY-FLLFESMLDSVLYAKNKYLA-KGGSVYP 140 (311)
T ss_dssp BT-TBTTTCHHHHHHHHHHHHEE-EEEEEES
T ss_pred ee-ecccccccHHHHHHHHhcCC-CCcEEec
Confidence 33 33444555666666677898 9999985
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=9.9e-13 Score=123.33 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
+.|++||........ ..+|||.|||+|.+|..||+. |+..+|+++|++++|++.|+++... .......++.+.+
T Consensus 82 pkD~s~Ii~~l~i~P----G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~-~~~~~~~nv~~~~ 156 (264)
T d1i9ga_ 82 PKDAAQIVHEGDIFP----GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG-CYGQPPDNWRLVV 156 (264)
T ss_dssp HHHHHHHHHHTTCCT----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-HHTSCCTTEEEEC
T ss_pred hHHHHHHHHHhCCCC----CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhh-hccCCCceEEEEe
Confidence 467788777654422 346999999999999999998 7888999999999999999997543 2112235789999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
+|+.+.. +....||+|+. .+.++
T Consensus 157 ~d~~~~~--------------------------------------------------~~~~~fDaV~l------dlp~P- 179 (264)
T d1i9ga_ 157 SDLADSE--------------------------------------------------LPDGSVDRAVL------DMLAP- 179 (264)
T ss_dssp SCGGGCC--------------------------------------------------CCTTCEEEEEE------ESSCG-
T ss_pred ccccccc--------------------------------------------------ccCCCcceEEE------ecCCH-
Confidence 9986544 22567999864 34444
Q ss_pred HHHHHHHHHHhhccCCCcEEEE
Q 045407 254 DLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVf 275 (382)
..++.+++++|+ |||.+++
T Consensus 180 --~~~l~~~~~~Lk-pGG~lv~ 198 (264)
T d1i9ga_ 180 --WEVLDAVSRLLV-AGGVLMV 198 (264)
T ss_dssp --GGGHHHHHHHEE-EEEEEEE
T ss_pred --HHHHHHHHhccC-CCCEEEE
Confidence 467899999999 9999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=6.2e-12 Score=119.66 Aligned_cols=122 Identities=10% Similarity=0.081 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-----cccCCCCcceEEEe
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-----KVGADGYSRISLFH 173 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-----kl~~d~~~RI~l~~ 173 (382)
.++..++.. ++-....+|||+|||+|.++..+|+..+...|+|||+|++|++.|+++... +.......+|.|++
T Consensus 138 ~~~~~~~~~-~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~ 216 (328)
T d1nw3a_ 138 DLVAQMIDE-IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216 (328)
T ss_dssp HHHHHHHHH-SCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHHHHHH-cCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence 556677765 443334679999999999999999876656899999999999999886432 00011235799999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
||+.++++... ....|+|++.++.+ . .
T Consensus 217 gd~~~~~~~~~------------------------------------------------~~~advi~~~~~~f----~-~ 243 (328)
T d1nw3a_ 217 GDFLSEEWRER------------------------------------------------IANTSVIFVNNFAF----G-P 243 (328)
T ss_dssp CCTTSHHHHHH------------------------------------------------HHHCSEEEECCTTT----C-H
T ss_pred Ccccccccccc------------------------------------------------cCcceEEEEcceec----c-h
Confidence 99998873111 11247777644322 2 6
Q ss_pred HHHHHHHHHHhhccCCCcEEEE
Q 045407 254 DLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVf 275 (382)
++...++.+++.|+ |||.+|.
T Consensus 244 ~~~~~l~e~~r~LK-pGg~iv~ 264 (328)
T d1nw3a_ 244 EVDHQLKERFANMK-EGGRIVS 264 (328)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEE
T ss_pred HHHHHHHHHHHhCC-CCcEEEE
Confidence 88899999999998 9999987
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=1.5e-12 Score=121.11 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG 174 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g 174 (382)
-|++|+.... +-+...+|||.|||||.+|..+|+. ++..+|+++|+++++++.|+++... . ....+|.+.++
T Consensus 72 kD~~~Ii~~l----~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~-~--~~~~nv~~~~~ 144 (250)
T d1yb2a1 72 IDASYIIMRC----GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE-F--YDIGNVRTSRS 144 (250)
T ss_dssp ---------C----CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT-T--SCCTTEEEECS
T ss_pred HHHHHHHHHc----CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-h--cCCCceEEEEe
Confidence 3677765432 2222357999999999999999986 6778999999999999999998533 1 12358999999
Q ss_pred cCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH
Q 045407 175 NVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254 (382)
Q Consensus 175 DV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d 254 (382)
|+.+.. ....||+|+. .+.++
T Consensus 145 Di~~~~---------------------------------------------------~~~~fD~V~l------d~p~p-- 165 (250)
T d1yb2a1 145 DIADFI---------------------------------------------------SDQMYDAVIA------DIPDP-- 165 (250)
T ss_dssp CTTTCC---------------------------------------------------CSCCEEEEEE------CCSCG--
T ss_pred eeeccc---------------------------------------------------ccceeeeeee------cCCch--
Confidence 987653 1456999974 23443
Q ss_pred HHHHHHHHHhhccCCCcEEEE
Q 045407 255 LVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVf 275 (382)
..++.+++++|+ |||+|++
T Consensus 166 -~~~l~~~~~~LK-pGG~lv~ 184 (250)
T d1yb2a1 166 -WNHVQKIASMMK-PGSVATF 184 (250)
T ss_dssp -GGSHHHHHHTEE-EEEEEEE
T ss_pred -HHHHHHHHHhcC-CCceEEE
Confidence 357899999999 9999997
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.25 E-value=6.9e-12 Score=112.75 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=82.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
.|||+|||+|..+..+|+..|...++|||+++.||..|.++... .+..+|.++++|+..+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~----~~l~Nv~~~~~Da~~l~~-------------- 93 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD----SEAQNVKLLNIDADTLTD-------------- 93 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH----SCCSSEEEECCCGGGHHH--------------
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH----HhccCchhcccchhhhhc--------------
Confidence 46799999999999999999999999999999999999888543 233579999999876541
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH-----HHHHHHHHHhhccCCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD-----LVLYFKHVLHALSKKG 270 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d-----L~~yFr~V~~~L~~pG 270 (382)
. +....+|.|..++ ..-|...+.. ....|+.+++.|+ ||
T Consensus 94 --~--------------------------------~~~~~~d~v~i~f-p~P~~k~~h~k~Rl~~~~~l~~~~r~Lk-pg 137 (204)
T d2fcaa1 94 --V--------------------------------FEPGEVKRVYLNF-SDPWPKKRHEKRRLTYSHFLKKYEEVMG-KG 137 (204)
T ss_dssp --H--------------------------------CCTTSCCEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHHT-TS
T ss_pred --c--------------------------------cCchhhhcccccc-ccccchhhhcchhhhHHHHHHHHHHhCC-CC
Confidence 1 3356789887665 4444444321 1368899999999 99
Q ss_pred cEEEE
Q 045407 271 GIFVM 275 (382)
Q Consensus 271 GiFVf 275 (382)
|+|+|
T Consensus 138 G~l~i 142 (204)
T d2fcaa1 138 GSIHF 142 (204)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 99988
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.2e-11 Score=114.44 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=64.9
Q ss_pred hcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE
Q 045407 91 VQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS 170 (382)
Q Consensus 91 vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~ 170 (382)
|--|-.|-..+........ ...+.+|||+|||||.+++.+++..+...|+|+|+|+.+|++|++|... ++ -.+|.
T Consensus 87 VlIPRpeTE~lv~~~l~~~-~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~-~~---~~~v~ 161 (274)
T d2b3ta1 87 TLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH-LA---IKNIH 161 (274)
T ss_dssp SCCCCTTHHHHHHHHHHHS-CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH-HT---CCSEE
T ss_pred ccccccchhhhhhhHhhhh-cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH-hC---cccce
Confidence 3445555555544444433 3346789999999999999999999999999999999999999998643 32 23799
Q ss_pred EEeccCCCch
Q 045407 171 LFHGNVLQPL 180 (382)
Q Consensus 171 l~~gDV~~~~ 180 (382)
++++|+.++.
T Consensus 162 ~~~~d~~~~~ 171 (274)
T d2b3ta1 162 ILQSDWFSAL 171 (274)
T ss_dssp EECCSTTGGG
T ss_pred eeeccccccc
Confidence 9999987654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.23 E-value=1.1e-11 Score=111.30 Aligned_cols=104 Identities=9% Similarity=0.040 Sum_probs=77.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||..+..+++.-+..+|+|||+|+.||+.|++++.. ..++.++.+|+..+....
T Consensus 58 ~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~------~~ni~~i~~d~~~~~~~~----------- 120 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYS----------- 120 (209)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTT-----------
T ss_pred CEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc------cCCceEEEeeccCccccc-----------
Confidence 479999999999999999987777999999999999999988532 137899999998876200
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
.....+|+| +.+ +.-..+....++++++.|+ |||.|+
T Consensus 121 ------------------------------------~~~~~vd~v--~~~----~~~~~~~~~~l~~~~~~Lk-pgG~l~ 157 (209)
T d1nt2a_ 121 ------------------------------------GIVEKVDLI--YQD----IAQKNQIEILKANAEFFLK-EKGEVV 157 (209)
T ss_dssp ------------------------------------TTCCCEEEE--EEC----CCSTTHHHHHHHHHHHHEE-EEEEEE
T ss_pred ------------------------------------cccceEEEE--Eec----ccChhhHHHHHHHHHHHhc-cCCeEE
Confidence 002234443 222 1222466788999999999 999998
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+-+.
T Consensus 158 i~~~ 161 (209)
T d1nt2a_ 158 IMVK 161 (209)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.21 E-value=9.3e-12 Score=113.66 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=85.4
Q ss_pred CchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 81 PSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
|..-..|...|..... .....++..|.......+|+|+|||+|.++++++++-|+.+++++||.. +++ .
T Consensus 51 p~~~~~F~~aM~~~~~--~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~----~---- 119 (243)
T d1kyza2 51 PRFNKVFNKGMSDHST--ITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIE----D---- 119 (243)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTT----T----
T ss_pred HHHHHHHHHHHhHhhh--hHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhh----h----
Confidence 4455556665532111 1122333333322334679999999999999999999999999999965 332 1
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
+....|+.++.+|+.++. |..|+++
T Consensus 120 --~~~~~r~~~~~~d~~~~~-----------------------------------------------------P~ad~~~ 144 (243)
T d1kyza2 120 --APSYPGVEHVGGDMFVSI-----------------------------------------------------PKADAVF 144 (243)
T ss_dssp --CCCCTTEEEEECCTTTCC-----------------------------------------------------CCCSCEE
T ss_pred --cccCCceEEecccccccC-----------------------------------------------------CCcceEE
Confidence 112358999999986543 2345543
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
. -.+.+..+.++.+..|++++++|+ |||.+++ |..
T Consensus 145 l--~~vlh~~~d~~~~~iL~~~~~al~-pgg~~li~d~~ 180 (243)
T d1kyza2 145 M--KWICHDWSDEHCLKFLKNCYEALP-DNGKVIVAECI 180 (243)
T ss_dssp C--SSSSTTSCHHHHHHHHHHHHHHCC-SSSCEEEEECE
T ss_pred E--EEEeecCCHHHHHHHHHHHHHhcC-CCceEEEEEEE
Confidence 3 345555678899999999999999 7775554 653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=2.8e-11 Score=108.55 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=75.2
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.+|+.|++. |+..+|+++|++++|++.|+++... .+..++.++++|..+..
T Consensus 76 g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~----~~~~n~~~~~~d~~~~~------------ 139 (213)
T d1dl5a1 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER----LGIENVIFVCGDGYYGV------------ 139 (213)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH----TTCCSEEEEESCGGGCC------------
T ss_pred cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh----hcccccccccCchHHcc------------
Confidence 357999999999999999985 5667899999999999999998532 23457889999875533
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. ...+||+|++.. ++..+. ..+++.|+ |||+
T Consensus 140 -----~---------------------------------~~~~fD~I~~~~-~~~~~p---------~~l~~~Lk-pGG~ 170 (213)
T d1dl5a1 140 -----P---------------------------------EFSPYDVIFVTV-GVDEVP---------ETWFTQLK-EGGR 170 (213)
T ss_dssp -----G---------------------------------GGCCEEEEEECS-BBSCCC---------HHHHHHEE-EEEE
T ss_pred -----c---------------------------------cccchhhhhhhc-cHHHhH---------HHHHHhcC-CCcE
Confidence 1 135699999865 444332 23566899 9999
Q ss_pred EEEec
Q 045407 273 FVMDL 277 (382)
Q Consensus 273 FVfDl 277 (382)
+|+=+
T Consensus 171 lv~pv 175 (213)
T d1dl5a1 171 VIVPI 175 (213)
T ss_dssp EEEEB
T ss_pred EEEEE
Confidence 99855
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.15 E-value=1.9e-11 Score=112.38 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=98.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|+|+|||+|.++..++++-|..+++++|| |+.++.+ ....||+++.+|+.++.
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----------~~~~rv~~~~gD~f~~~-------------- 136 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----------SGSNNLTYVGGDMFTSI-------------- 136 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----------CCBTTEEEEECCTTTCC--------------
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----------cccCceEEEecCcccCC--------------
Confidence 4699999999999999999999999999999 4454311 12359999999986543
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC---c
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG---G 271 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG---G 271 (382)
+..|+++..+--+. .+.++.++.|++++++|+ || |
T Consensus 137 ---------------------------------------p~aD~~~l~~vLHd--w~d~~~~~iL~~~~~al~-pgg~~~ 174 (244)
T d1fp2a2 137 ---------------------------------------PNADAVLLKYILHN--WTDKDCLRILKKCKEAVT-NDGKRG 174 (244)
T ss_dssp ---------------------------------------CCCSEEEEESCGGG--SCHHHHHHHHHHHHHHHS-GGGCCC
T ss_pred ---------------------------------------CCCcEEEEEeeccc--CChHHHHHHHHHHHHHcC-cccCCc
Confidence 45799887653333 467888999999999999 87 4
Q ss_pred -EEEEecc-CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHH
Q 045407 272 -IFVMDLY-GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEE 349 (382)
Q Consensus 272 -iFVfDl~-gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Lee 349 (382)
++|+|.. ............ . ..+|. +...-.+ |.+|..|++++|++
T Consensus 175 ~lli~e~~~~~~~~~~~~~~~------~-----~~~dl---------~m~~~~G------------~ert~~e~~~ll~~ 222 (244)
T d1fp2a2 175 KVTIIDMVIDKKKDENQVTQI------K-----LLMDV---------NMACLNG------------KERNEEEWKKLFIE 222 (244)
T ss_dssp EEEEEECEECTTTSCHHHHHH------H-----HHHHH---------HGGGGTC------------CCEEHHHHHHHHHH
T ss_pred EEEEEEeecCCCCCCchHHHH------H-----HHHHH---------HHHhCCC------------cCCCHHHHHHHHHH
Confidence 4555754 111100000000 0 00111 0000011 35688999999999
Q ss_pred cCCcEEEEE
Q 045407 350 AGFRSVHFW 358 (382)
Q Consensus 350 AGF~~V~v~ 358 (382)
|||+.++|+
T Consensus 223 AGf~~~~i~ 231 (244)
T d1fp2a2 223 AGFQHYKIS 231 (244)
T ss_dssp TTCCEEEEE
T ss_pred cCCceEEEE
Confidence 999999986
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=1.1e-10 Score=115.42 Aligned_cols=123 Identities=10% Similarity=0.079 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-----ccCCCCcceEE-E
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-----VGADGYSRISL-F 172 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-----l~~d~~~RI~l-~ 172 (382)
.++.+++.+ ++-..-.+|||+|||+|.++..+|+.-+..+|+|||+|+.|++.|+++.... +.......+.+ +
T Consensus 203 ~~i~~Il~~-l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 203 NFLSDVYQQ-CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHH-TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHH-hCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 688888876 3322235799999999999999998755458999999999999999886430 00011123333 4
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
++++.+.+.... .....|+|++.++.+ .
T Consensus 282 ~~~f~~~~~~d~-----------------------------------------------~~~~adVV~inn~~f----~- 309 (406)
T d1u2za_ 282 KKSFVDNNRVAE-----------------------------------------------LIPQCDVILVNNFLF----D- 309 (406)
T ss_dssp SSCSTTCHHHHH-----------------------------------------------HGGGCSEEEECCTTC----C-
T ss_pred eechhhcccccc-----------------------------------------------ccccceEEEEecccC----c-
Confidence 566655441100 134578888765322 2
Q ss_pred hHHHHHHHHHHhhccCCCcEEEE
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+++...|+.+++.|+ |||.||.
T Consensus 310 ~~l~~~L~ei~r~LK-PGGrIVs 331 (406)
T d1u2za_ 310 EDLNKKVEKILQTAK-VGCKIIS 331 (406)
T ss_dssp HHHHHHHHHHHTTCC-TTCEEEE
T ss_pred hHHHHHHHHHHHhcC-CCcEEEE
Confidence 689999999999999 9999887
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.7e-11 Score=116.22 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=91.1
Q ss_pred HHHHHHhhcC-----ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhc
Q 045407 84 FLLYQQSVQS-----PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 84 ~~LYd~~vq~-----p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
+..|-.+|.. -+-|+++|...+.... ..+|||.|||+|.+|..||+. |+..+|+++|++++|++.|++|.
T Consensus 68 ~~d~~~~~~r~tqiiypkD~~~Il~~l~i~p----G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~ 143 (324)
T d2b25a1 68 LEDYVVLMKRGTAITFPKDINMILSMMDINP----GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 143 (324)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHTCCT----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHhhccCCCCcccccccHHHHHHHhCCCC----CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHH
Confidence 4455555532 3568888887665422 346999999999999999986 67789999999999999999874
Q ss_pred ccc-------ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccC
Q 045407 158 LNK-------VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQK 230 (382)
Q Consensus 158 ~~k-------l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (382)
... .......++.+.++|+.+... +
T Consensus 144 ~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~------------------------------------------------~ 175 (324)
T d2b25a1 144 KHWRDSWKLSHVEEWPDNVDFIHKDISGATE------------------------------------------------D 175 (324)
T ss_dssp HHHHHHHTTTCSSCCCCCEEEEESCTTCCC--------------------------------------------------
T ss_pred HHhhhhhhhhhhhccccceeEEecchhhccc------------------------------------------------c
Confidence 320 011223579999999877651 0
Q ss_pred CCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 231 SSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 231 ~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+....||+|+. | +.++ -.++.+++++|+ |||+|++
T Consensus 176 ~~~~~fD~V~L--D----~p~P---~~~l~~~~~~LK-pGG~lv~ 210 (324)
T d2b25a1 176 IKSLTFDAVAL--D----MLNP---HVTLPVFYPHLK-HGGVCAV 210 (324)
T ss_dssp -----EEEEEE--C----SSST---TTTHHHHGGGEE-EEEEEEE
T ss_pred cCCCCcceEee--c----CcCH---HHHHHHHHHhcc-CCCEEEE
Confidence 12356899863 2 2333 347889999999 9999998
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.13 E-value=1.2e-10 Score=104.41 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=81.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|+ +||+|||+|.++..+|+..|...++|||+++.||..|.++... .+-.+|.++++|+.++..
T Consensus 33 pl-vLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~----~~l~Ni~~~~~da~~l~~------------ 95 (204)
T d1yzha1 33 PI-HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE----VGVPNIKLLWVDGSDLTD------------ 95 (204)
T ss_dssp CE-EEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH----HCCSSEEEEECCSSCGGG------------
T ss_pred Ce-EEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh----hccccceeeecCHHHHhh------------
Confidence 54 6799999999999999999999999999999999999887643 123479999999987651
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh-----HHHHHHHHHHhhccC
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA-----DLVLYFKHVLHALSK 268 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~-----dL~~yFr~V~~~L~~ 268 (382)
.+....+|.|++++ .-=|...+. --..+|+.+++.|+
T Consensus 96 ------------------------------------~~~~~~~~~i~i~f-PdPw~K~~h~krRl~~~~~l~~~~~~Lk- 137 (204)
T d1yzha1 96 ------------------------------------YFEDGEIDRLYLNF-SDPWPKKRHEKRRLTYKTFLDTFKRILP- 137 (204)
T ss_dssp ------------------------------------TSCTTCCSEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHSC-
T ss_pred ------------------------------------hccCCceehhcccc-cccccchhhhhhhhhHHHHHHHHHHhCC-
Confidence 13356688887554 333333322 12578899999999
Q ss_pred CCcEEEE
Q 045407 269 KGGIFVM 275 (382)
Q Consensus 269 pGGiFVf 275 (382)
|||.|.|
T Consensus 138 pgG~l~i 144 (204)
T d1yzha1 138 ENGEIHF 144 (204)
T ss_dssp TTCEEEE
T ss_pred CCcEEEE
Confidence 9999987
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=1.9e-11 Score=114.03 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG 174 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g 174 (382)
-|++||...+.. +...+|||.|||||.+|..+|+. ++..+|+|+|+|++|++.|+++... .+- ..++.+.++
T Consensus 90 kd~~~Ii~~l~i----~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~-~g~--~~~v~~~~~ 162 (266)
T d1o54a_ 90 KDSSFIAMMLDV----KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-WGL--IERVTIKVR 162 (266)
T ss_dssp HHHHHHHHHTTC----CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-TTC--GGGEEEECC
T ss_pred HHHHHHHHhhCC----CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hcc--ccCcEEEec
Confidence 477887765543 22357999999999999999987 5677999999999999999998532 221 246778777
Q ss_pred cCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH
Q 045407 175 NVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254 (382)
Q Consensus 175 DV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d 254 (382)
|+.... ....+|.|+. .+. +
T Consensus 163 d~~~~~---------------------------------------------------~~~~~D~V~~------d~p---~ 182 (266)
T d1o54a_ 163 DISEGF---------------------------------------------------DEKDVDALFL------DVP---D 182 (266)
T ss_dssp CGGGCC---------------------------------------------------SCCSEEEEEE------CCS---C
T ss_pred cccccc---------------------------------------------------cccceeeeEe------cCC---C
Confidence 763322 2455787753 233 3
Q ss_pred HHHHHHHHHhhccCCCcEEEEec
Q 045407 255 LVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVfDl 277 (382)
...++++++++|+ |||.+++-+
T Consensus 183 p~~~l~~~~~~LK-pGG~lv~~~ 204 (266)
T d1o54a_ 183 PWNYIDKCWEALK-GGGRFATVC 204 (266)
T ss_dssp GGGTHHHHHHHEE-EEEEEEEEE
T ss_pred HHHHHHHHHhhcC-CCCEEEEEe
Confidence 4568999999999 999999754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.10 E-value=9.4e-11 Score=105.40 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=58.2
Q ss_pred ChhhH-HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 94 PKGDI-SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 94 p~~Di-~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
.+.++ .++.....+. +.-...+|||+|||||.|++.++..|.. .|+|||+|+++++.|++|. .++.++
T Consensus 29 T~~~~a~~~~~~~~~~-~dl~Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~---------~~~~~~ 97 (197)
T d1ne2a_ 29 TDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNC---------GGVNFM 97 (197)
T ss_dssp CCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHC---------TTSEEE
T ss_pred CCHHHHHHHHHHHHHc-CCCCCCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHcc---------ccccEE
Confidence 45555 3443333332 4444568999999999999999999974 8999999999999999984 257899
Q ss_pred eccCCCch
Q 045407 173 HGNVLQPL 180 (382)
Q Consensus 173 ~gDV~~~~ 180 (382)
++|+.+++
T Consensus 98 ~~D~~~l~ 105 (197)
T d1ne2a_ 98 VADVSEIS 105 (197)
T ss_dssp ECCGGGCC
T ss_pred EEehhhcC
Confidence 99986544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.4e-10 Score=105.10 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=74.5
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.+++.+|+. |+.++|+|||++++|++.|+++... .+..-...++.+.++|.....
T Consensus 78 ~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~------------ 145 (224)
T d1i1na_ 78 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY------------ 145 (224)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC------------
T ss_pred CeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc------------
Confidence 57999999999999999985 5667999999999999999987532 111112347889999975543
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. ...+||+|++... +-.+. ..+.+.|+ |||+
T Consensus 146 -----~---------------------------------~~~~fD~I~~~~~-~~~ip---------~~l~~~Lk-pGG~ 176 (224)
T d1i1na_ 146 -----A---------------------------------EEAPYDAIHVGAA-APVVP---------QALIDQLK-PGGR 176 (224)
T ss_dssp -----G---------------------------------GGCCEEEEEECSB-BSSCC---------HHHHHTEE-EEEE
T ss_pred -----c---------------------------------hhhhhhhhhhhcc-hhhcC---------HHHHhhcC-CCcE
Confidence 1 1357999998763 22222 24667898 9999
Q ss_pred EEEec
Q 045407 273 FVMDL 277 (382)
Q Consensus 273 FVfDl 277 (382)
+|+=+
T Consensus 177 LV~pv 181 (224)
T d1i1na_ 177 LILPV 181 (224)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99854
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=4.1e-10 Score=102.73 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=79.1
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||..+..|++. |+..+|+|||+|+.||+.+++++.. ...+..+++|.+.+..
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~------~~~~~~i~~d~~~~~~------------ 136 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEE------------ 136 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGG------------
T ss_pred CEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh------cCCceEEEEECCCccc------------
Confidence 47999999999999999986 6778999999999999999988532 2357788888877651
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ....+.+|+|++- . ....+....++++++.|+ |||+|
T Consensus 137 ----~-------------------------------~~~~~~vD~i~~d--~----~~~~~~~~~l~~~~~~Lk-pgG~l 174 (227)
T d1g8aa_ 137 ----Y-------------------------------RALVPKVDVIFED--V----AQPTQAKILIDNAEVYLK-RGGYG 174 (227)
T ss_dssp ----G-------------------------------TTTCCCEEEEEEC--C----CSTTHHHHHHHHHHHHEE-EEEEE
T ss_pred ----c-------------------------------cccccceEEEEEE--c----cccchHHHHHHHHHHhcc-cCCeE
Confidence 0 0113456776542 2 223566778999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+-++
T Consensus 175 vi~~k 179 (227)
T d1g8aa_ 175 MIAVK 179 (227)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98665
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.03 E-value=2.5e-10 Score=109.18 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.++.+.+..+ ..+.+|||+|||||.+|+..++.|. .|++||+|..+|++|++|.... .-...++.++++|+.+
T Consensus 121 ~~~~~~~~~~---~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln--~~~~~~~~~i~~D~~~ 193 (309)
T d2igta1 121 EWLKNAVETA---DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLA--GLEQAPIRWICEDAMK 193 (309)
T ss_dssp HHHHHHHHHS---SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHH--TCTTSCEEEECSCHHH
T ss_pred HHHHHHHhhc---cCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhh--cccCCcEEEEeCCHHH
Confidence 3444444432 2256899999999999999999884 7999999999999999985321 1122479999999866
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
+.
T Consensus 194 ~l 195 (309)
T d2igta1 194 FI 195 (309)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.99 E-value=5.5e-10 Score=94.78 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=52.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++++.+.+|.. +|++||+|+.++++++++.. +++. ..++.++++|+..+.
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~-~~~~--~~~~~ii~~D~~~~l 77 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNII-MTKA--ENRFTLLKMEAERAI 77 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHH-TTTC--GGGEEEECSCHHHHH
T ss_pred CeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhh-hccc--ccchhhhcccccccc
Confidence 47999999999999999999984 99999999999999999753 3332 357999999986643
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=2.3e-10 Score=108.63 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=78.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+|+.+|+.+ ..|++||+|+.||++|++|... .+..++.++++|+.++...
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~--~~V~~vD~s~~al~~a~~n~~~----ngl~~~~~i~~d~~~~~~~------------ 208 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARL----NGLGNVRVLEANAFDLLRR------------ 208 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHH----TTCTTEEEEESCHHHHHHH------------
T ss_pred CeeeccCCCCcHHHHHHHhcC--CcEEeecchHHHHHHHHHHHHH----cCCCCcceeeccHHHHhhh------------
Confidence 479999999999999998766 4799999999999999998633 2334799999998765410
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc----c-CChhHHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC----L-HKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y----L-~~r~dL~~yFr~V~~~L~~p 269 (382)
+.. ...+||+|++=-=++.. + .-..+....++.+.+.|+ |
T Consensus 209 -~~~---------------------------------~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk-p 253 (318)
T d1wxxa2 209 -LEK---------------------------------EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-E 253 (318)
T ss_dssp -HHH---------------------------------TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-E
T ss_pred -hHh---------------------------------hhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 001 14679999863221111 0 012234467778899999 9
Q ss_pred CcEEEEec
Q 045407 270 GGIFVMDL 277 (382)
Q Consensus 270 GGiFVfDl 277 (382)
||++|+=.
T Consensus 254 GG~Lv~~s 261 (318)
T d1wxxa2 254 GGILATAS 261 (318)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEe
Confidence 99999843
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=3.8e-10 Score=107.09 Aligned_cols=125 Identities=16% Similarity=0.114 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
......+..++. ...+|||+|||||.+|+..|+.|.. +|++||+|+.+|++|++|... .+- ..++.++++|+.+
T Consensus 133 r~~r~~~~~~~~--~g~~VLDl~~g~G~~si~~a~~ga~-~V~~vD~s~~al~~a~~N~~~-ngl--~~~~~~~~~d~~~ 206 (324)
T d2as0a2 133 RENRLALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKL-NGV--EDRMKFIVGSAFE 206 (324)
T ss_dssp HHHHHHHGGGCC--TTCEEEETTCTTTHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHH-TTC--GGGEEEEESCHHH
T ss_pred hhHHHHHHhhcC--CCCeeecccCcccchhhhhhhcCCc-EEEeecCCHHHHHHHHHHHHH-cCC--Cccceeeechhhh
Confidence 333444444442 1247999999999999999999864 899999999999999998643 111 2479999999865
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh------
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR------ 252 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r------ 252 (382)
.... +.. ...+||+|++--=++ ....
T Consensus 207 ~~~~-------------~~~---------------------------------~~~~fD~Vi~DpP~~--~~~~~~~~~~ 238 (324)
T d2as0a2 207 EMEK-------------LQK---------------------------------KGEKFDIVVLDPPAF--VQHEKDLKAG 238 (324)
T ss_dssp HHHH-------------HHH---------------------------------TTCCEEEEEECCCCS--CSSGGGHHHH
T ss_pred hhHH-------------HHh---------------------------------ccCCCCchhcCCccc--cCCHHHHHHH
Confidence 4310 000 135799999632111 1222
Q ss_pred -hHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 253 -ADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 253 -~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.+....++.+.+.|+ |||++|+=..
T Consensus 239 ~~~y~~l~~~a~~ll~-pGG~lv~~s~ 264 (324)
T d2as0a2 239 LRAYFNVNFAGLNLVK-DGGILVTCSC 264 (324)
T ss_dssp HHHHHHHHHHHHTTEE-EEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcC-CCcEEEEEeC
Confidence 234557888899999 9999998443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.97 E-value=9.1e-10 Score=97.95 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+....... +.-...+|||+|||||.++.+++.+|. ..|+|||+|+.+++.|++|... ...++.++++|+.+
T Consensus 33 ~~~~~~~~~~-~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~-----~~~~~~~~~~d~~~ 105 (201)
T d1wy7a1 33 SELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGE-----FKGKFKVFIGDVSE 105 (201)
T ss_dssp HHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGG-----GTTSEEEEESCGGG
T ss_pred HHHHHHHHhc-CCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHH-----cCCCceEEECchhh
Confidence 4444444432 333345799999999999999999987 4899999999999999998532 22478899999755
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
+.
T Consensus 106 ~~ 107 (201)
T d1wy7a1 106 FN 107 (201)
T ss_dssp CC
T ss_pred hC
Confidence 43
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=8.8e-09 Score=92.51 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.+|..+.+. ..|.+|||+|||+|.-|+.||+. ....+|+++|+++++++.|+++. .+.+ -..+|.+++||..
T Consensus 46 ~lL~~lv~~----~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~g--l~~~i~l~~Gd~~ 118 (214)
T d2cl5a1 46 QIMDAVIRE----YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAG--LQDKVTILNGASQ 118 (214)
T ss_dssp HHHHHHHHH----HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHT--CGGGEEEEESCHH
T ss_pred HHHHHHHHh----hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcC--CCccceeeecccc
Confidence 455555554 24789999999999999999975 33468999999999999999864 2222 1247999999976
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+... .+.- .+....||+|+.=.+ ++......
T Consensus 119 e~l~-------------~l~~-------------------------------~~~~~~~D~ifiD~~-----~~~~~~~~ 149 (214)
T d2cl5a1 119 DLIP-------------QLKK-------------------------------KYDVDTLDMVFLDHW-----KDRYLPDT 149 (214)
T ss_dssp HHGG-------------GHHH-------------------------------HSCCCCEEEEEECSC-----GGGHHHHH
T ss_pred cccc-------------chhh-------------------------------cccccccceeeeccc-----ccccccHH
Confidence 5430 0000 022467898875421 23233445
Q ss_pred HHHHHHhhccCCCcEEEEec--cCCC
Q 045407 258 YFKHVLHALSKKGGIFVMDL--YGGT 281 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl--~gg~ 281 (382)
+|..+.+.|+ |||++|+|= +.|.
T Consensus 150 ~l~~~~~lLk-pGGvIv~Ddvl~~g~ 174 (214)
T d2cl5a1 150 LLLEKCGLLR-KGTVLLADNVIVPGT 174 (214)
T ss_dssp HHHHHTTCEE-EEEEEEESCCCCCCC
T ss_pred HHHHHhCccC-CCcEEEEeCcCCCCC
Confidence 6778888999 999999963 3444
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.87 E-value=4.8e-09 Score=95.51 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=48.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+|||+|||||.+|+.+++.+ .+|+++|+++++++.|+++.. ...++.++++|...
T Consensus 71 g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~------~~~nv~~~~~d~~~ 127 (224)
T d1vbfa_ 71 GQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS------YYNNIKLILGDGTL 127 (224)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT------TCSSEEEEESCGGG
T ss_pred cceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHh------cccccccccCchhh
Confidence 3479999999999999999998 479999999999999998742 23589999999644
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.87 E-value=1e-09 Score=101.62 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=51.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|||+|||+|.+|+.+|++|. .+|+++|+|+.+++++++|... .+- ..+|.++++|++++.
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~-~~V~avd~n~~a~~~~~~N~~~-n~l--~~~v~~~~~D~~~~~ 170 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHL-NKV--EDRMSAYNMDNRDFP 170 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHH-TTC--TTTEEEECSCTTTCC
T ss_pred cEEEECcceEcHHHHHHHHhCC-cEEEEecCCHHHHHHHHHHHHH-hCC--CceEEEEEcchHHhc
Confidence 4699999999999999999985 4899999999999999998533 111 247999999998765
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.82 E-value=2.6e-09 Score=101.56 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=80.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.+|+..++.|. ..|++||+|+.+|+||++|... .+ ...++.++++|+.+...
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l---~~~~~~~i~~d~~~~l~------------ 209 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHL---DMANHQLVVMDVFDYFK------------ 209 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTC---CCTTEEEEESCHHHHHH------------
T ss_pred CceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcc---cCcceEEEEccHHHHHH------------
Confidence 3699999999999999888887 4899999999999999998632 22 12478999999865431
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc----cchhccc-CChhHHHHHHHHHHhhccC
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF----NYSCCCL-HKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af----n~S~~yL-~~r~dL~~yFr~V~~~L~~ 268 (382)
++.. ...+||+|++= .-+=.-+ .-..+....++.+.+.|+
T Consensus 210 -~~~~---------------------------------~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~- 254 (317)
T d2b78a2 210 -YARR---------------------------------HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS- 254 (317)
T ss_dssp -HHHH---------------------------------TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEE-
T ss_pred -HHHh---------------------------------hcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcC-
Confidence 0001 03569999862 1111111 112356678888999999
Q ss_pred CCcEEEEeccCC
Q 045407 269 KGGIFVMDLYGG 280 (382)
Q Consensus 269 pGGiFVfDl~gg 280 (382)
|||++|+=.+..
T Consensus 255 pgG~l~~~scs~ 266 (317)
T d2b78a2 255 ENGLIIASTNAA 266 (317)
T ss_dssp EEEEEEEEECCT
T ss_pred CCCEEEEEeCCc
Confidence 999999966543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.81 E-value=1.7e-08 Score=88.84 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccH----hHHHHHHh----CCCCeEEEEeCCHHHHHHHHHhccccccCCCC---c
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTAL----LSTEWLRS----DSRRTAVGLDLDLEALEWCMENNLNKVGADGY---S 167 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~----LS~elar~----g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~---~ 167 (382)
++|.+..+. ...|.+|+..|||||. |++.|+.. +.+.+++|.|+|+.+|+.|++-....-..... .
T Consensus 13 ~~L~~~~~~---~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~ 89 (193)
T d1af7a2 13 PILAEHARR---RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQ 89 (193)
T ss_dssp HHHHHHHHH---SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHH
T ss_pred HHHHHHHhc---cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHH
Confidence 456555544 2347899999999998 56655543 23347999999999999998653221000000 0
Q ss_pred ce-EEEeccCCCchhhhhcccc-hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch
Q 045407 168 RI-SLFHGNVLQPLEAKLVRYE-PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS 245 (382)
Q Consensus 168 RI-~l~~gDV~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S 245 (382)
+. -+......... +.. ...+.+.+..... ..........++||+|+|-| .
T Consensus 90 ~~~yf~~~~~~~~~-----~~~~~~~~~~~v~~~~~----------------------~~~~~~~~~~~~fDvI~CRN-V 141 (193)
T d1af7a2 90 LQRYFMRGTGPHEG-----LVRVRQELANYVEFSSV----------------------NLLEKQYNVPGPFDAIFCRN-V 141 (193)
T ss_dssp HHHHEEECCTTSCS-----EEEECHHHHTTEEEEEC----------------------CTTCSSCCCCCCEEEEEECS-S
T ss_pred HhhceeecCCCccc-----eeehHHHHHHHHHHhhh----------------------hccccccCCCCCccEEEeeh-h
Confidence 00 01111100000 000 0111111111000 00000011246799999999 7
Q ss_pred hcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 246 CCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 246 ~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
+-||.. +...+.+++.+++|+ |||++|+-
T Consensus 142 LiYf~~-~~~~~vl~~l~~~L~-pGG~L~lG 170 (193)
T d1af7a2 142 MIYFDK-TTQEDILRRFVPLLK-PDGLLFAG 170 (193)
T ss_dssp GGGSCH-HHHHHHHHHHGGGEE-EEEEEEEC
T ss_pred HHhcCH-HHHHHHHHHHHHHhC-CCcEEEEe
Confidence 889775 666889999999999 99999884
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.78 E-value=2.1e-09 Score=93.12 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=38.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNL 158 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~ 158 (382)
.+|||+|||||.++++.+.+|. .|+++|+|+.|+++|++|..
T Consensus 43 ~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~ 84 (171)
T d1ws6a1 43 GRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVR 84 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHH
T ss_pred CeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHH
Confidence 3699999999999999999995 79999999999999998853
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.2e-08 Score=92.25 Aligned_cols=128 Identities=14% Similarity=0.059 Sum_probs=91.6
Q ss_pred hcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcce
Q 045407 91 VQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRI 169 (382)
Q Consensus 91 vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI 169 (382)
|+-.+....+|..+.++ ..|.+|||+|||||.-+..+|+.-+ ..+++.+|.+++..++|+++... .+ -..++
T Consensus 41 ~~i~~~~g~lL~~L~~~----~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~-ag--~~~~i 113 (219)
T d2avda1 41 SMMTCEQAQLLANLARL----IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ-AE--AEHKI 113 (219)
T ss_dssp GSCCHHHHHHHHHHHHH----TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH-TT--CTTTE
T ss_pred cccCHHHHHHHHHHHHc----cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHh-cC--ccceE
Confidence 33344445666666665 3378899999999999888887633 56899999999999999987432 22 23589
Q ss_pred EEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc
Q 045407 170 SLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL 249 (382)
Q Consensus 170 ~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL 249 (382)
.++.||..+.... ++ . .....+||+|+.=.+-
T Consensus 114 ~~~~Gda~e~l~~---------~~----~-------------------------------~~~~~~fD~ifiD~dk---- 145 (219)
T d2avda1 114 DLRLKPALETLDE---------LL----A-------------------------------AGEAGTFDVAVVDADK---- 145 (219)
T ss_dssp EEEESCHHHHHHH---------HH----H-------------------------------TTCTTCEEEEEECSCS----
T ss_pred EEEEeehhhcchh---------hh----h-------------------------------hcccCCccEEEEeCCH----
Confidence 9999997554310 00 0 0114579999875433
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.....||..+...|+ |||++|+|-
T Consensus 146 ---~~y~~~~~~~~~lL~-~GGvii~Dn 169 (219)
T d2avda1 146 ---ENCSAYYERCLQLLR-PGGILAVLR 169 (219)
T ss_dssp ---TTHHHHHHHHHHHEE-EEEEEEEEC
T ss_pred ---HHHHHHHHHHHHHhc-CCcEEEEeC
Confidence 455789999999999 999999973
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.77 E-value=2.2e-08 Score=93.58 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=60.2
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
|-.|-..|.+....+.....+.+++|+|||+|.+++.+++. +..+|+|+|+|+++|++|++|... .+. ..++.+.+
T Consensus 91 PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~-~~~--~~~~~i~~ 166 (271)
T d1nv8a_ 91 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAER-HGV--SDRFFVRK 166 (271)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHH-TTC--TTSEEEEE
T ss_pred chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHH-cCC--CceeEEee
Confidence 44455444444433332233557999999999999999865 678999999999999999998643 222 24788899
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
+|+.++.
T Consensus 167 ~~~~~~~ 173 (271)
T d1nv8a_ 167 GEFLEPF 173 (271)
T ss_dssp SSTTGGG
T ss_pred ccccccc
Confidence 9987765
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=1e-08 Score=89.52 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=50.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++||+|||||.++.+.+.+|.. .|+.||+|+.+++++++|. ++++. ..+.++++|+....
T Consensus 46 ~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~-~~~~~---~~~~ii~~d~~~~l 105 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNL-ATLKA---GNARVVNSNAMSFL 105 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHH-HHTTC---CSEEEECSCHHHHH
T ss_pred hhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHH-hhccc---cceeeeeecccccc
Confidence 6999999999999999999985 8999999999999999874 33332 46788999976543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.71 E-value=1.3e-08 Score=89.06 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=52.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|||||||||.++.+.+.+|.. .|++||.|+++++++++|. .+++. ..++.++++|+.+..
T Consensus 42 ~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~-~~~~~--~~~~~i~~~D~~~~l 104 (182)
T d2fhpa1 42 GGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENI-AITKE--PEKFEVRKMDANRAL 104 (182)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHH-HHHTC--GGGEEEEESCHHHHH
T ss_pred CCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHh-hhhhc--ccccccccccchhhh
Confidence 357999999999999999999985 8999999999999999975 32332 247999999986543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.68 E-value=6.4e-08 Score=88.05 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=94.4
Q ss_pred hcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcce
Q 045407 91 VQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRI 169 (382)
Q Consensus 91 vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI 169 (382)
|+.......||..+.++. .|.+|||+|+++|--++.+|+.-+ ..+|+.+|++++..++|+++.. +.+- ..+|
T Consensus 41 m~~~~~~g~~L~~L~~~~----~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~-~~g~--~~~i 113 (227)
T d1susa1 41 MTTSADEGQFLSMLLKLI----NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK-KAGV--DHKI 113 (227)
T ss_dssp GSCCHHHHHHHHHHHHHH----TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH-HTTC--GGGE
T ss_pred cccCHHHHHHHHHHHHhc----CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHH-Hhcc--ccce
Confidence 555666667877777763 377899999999999999987543 4799999999999999999753 3222 3589
Q ss_pred EEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc
Q 045407 170 SLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL 249 (382)
Q Consensus 170 ~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL 249 (382)
.+++||..+... +|..+- ...++||+|+.=.+--
T Consensus 114 ~~~~g~a~~~L~---------~l~~~~----------------------------------~~~~~fD~iFiDa~k~--- 147 (227)
T d1susa1 114 DFREGPALPVLD---------EMIKDE----------------------------------KNHGSYDFIFVDADKD--- 147 (227)
T ss_dssp EEEESCHHHHHH---------HHHHCG----------------------------------GGTTCBSEEEECSCST---
T ss_pred eeeehHHHHHHH---------HHHhcc----------------------------------ccCCceeEEEeccchh---
Confidence 999999755431 000000 0146799998865443
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
....||..+...|+ |||++|+|
T Consensus 148 ----~y~~~~e~~~~ll~-~gGiii~D 169 (227)
T d1susa1 148 ----NYLNYHKRLIDLVK-VGGVIGYD 169 (227)
T ss_dssp ----THHHHHHHHHHHBC-TTCCEEEE
T ss_pred ----hhHHHHHHHHhhcC-CCcEEEEc
Confidence 34789999999999 99999998
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=3.4e-08 Score=87.75 Aligned_cols=110 Identities=22% Similarity=0.170 Sum_probs=80.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..++|.+||||-+|..++++-+..+|+|+|.|++||+.|+++... -..|+.+++++..++.. ++.
T Consensus 25 ~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~-----~~~r~~~~~~~f~~~~~----------~~~ 89 (192)
T d1m6ya2 25 KIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE-----FSDRVSLFKVSYREADF----------LLK 89 (192)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG-----GTTTEEEEECCGGGHHH----------HHH
T ss_pred CEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc-----ccccccchhHHHhhHHH----------HHH
Confidence 468999999999999999998888999999999999999998532 12489999999877652 011
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc-chhccc----CChhHHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN-YSCCCL----HKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn-~S~~yL----~~r~dL~~yFr~V~~~L~~p 269 (382)
. +...+||.|+.=. .|-.-| ..-..+...+..+.+.|+ |
T Consensus 90 ~-----------------------------------~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk-~ 133 (192)
T d1m6ya2 90 T-----------------------------------LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLN-P 133 (192)
T ss_dssp H-----------------------------------TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEE-E
T ss_pred H-----------------------------------cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcC-C
Confidence 1 1235688776421 111000 123456778889999999 9
Q ss_pred CcEEEE
Q 045407 270 GGIFVM 275 (382)
Q Consensus 270 GGiFVf 275 (382)
||.+++
T Consensus 134 gG~l~i 139 (192)
T d1m6ya2 134 GGRIVV 139 (192)
T ss_dssp EEEEEE
T ss_pred CCeeee
Confidence 999986
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.65 E-value=4e-08 Score=88.76 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||-+|+.+++.-. .+|++||.++++++.|+++... .+..++.++++|..+-..
T Consensus 79 g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~----~g~~nv~~~~gd~~~g~~------------ 141 (215)
T d1jg1a_ 79 GMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLER----AGVKNVHVILGDGSKGFP------------ 141 (215)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHH----TTCCSEEEEESCGGGCCG------------
T ss_pred cceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHH----cCCceeEEEECccccCCc------------
Confidence 34799999999999999998732 3699999999999999998532 344689999999755320
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+||+|++.. ++..+. .. ..+.|+ +||.+
T Consensus 142 --------------------------------------~~~pfD~Iiv~~-a~~~ip--~~-------l~~qL~-~gGrL 172 (215)
T d1jg1a_ 142 --------------------------------------PKAPYDVIIVTA-GAPKIP--EP-------LIEQLK-IGGKL 172 (215)
T ss_dssp --------------------------------------GGCCEEEEEECS-BBSSCC--HH-------HHHTEE-EEEEE
T ss_pred --------------------------------------ccCcceeEEeec-ccccCC--HH-------HHHhcC-CCCEE
Confidence 146799999864 444433 22 456898 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+-+-
T Consensus 173 v~pv~ 177 (215)
T d1jg1a_ 173 IIPVG 177 (215)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99764
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.58 E-value=2.8e-08 Score=94.33 Aligned_cols=116 Identities=21% Similarity=0.131 Sum_probs=83.2
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-ccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-VGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+||.+|.|.|.++.++++..+..+|++||||++++++|++....- -+.-...|+.++.+|.++...
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~--------- 146 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE--------- 146 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH---------
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh---------
Confidence 4588999999999999999998877678999999999999999874220 011123589999999876541
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc-cchhcccCChhHH--HHHHHHHHhhcc
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF-NYSCCCLHKRADL--VLYFKHVLHALS 267 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af-n~S~~yL~~r~dL--~~yFr~V~~~L~ 267 (382)
- ...+||+|+.= ++.+.--.....| ..+|+.++++|+
T Consensus 147 -------~---------------------------------~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~ 186 (312)
T d1uira_ 147 -------R---------------------------------TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN 186 (312)
T ss_dssp -------H---------------------------------CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE
T ss_pred -------h---------------------------------cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcC
Confidence 0 14579999863 2222210001112 568999999999
Q ss_pred CCCcEEEEec
Q 045407 268 KKGGIFVMDL 277 (382)
Q Consensus 268 ~pGGiFVfDl 277 (382)
|||+|++-+
T Consensus 187 -p~Gvlv~~~ 195 (312)
T d1uira_ 187 -PGGVMGMQT 195 (312)
T ss_dssp -EEEEEEEEE
T ss_pred -CCceEEEec
Confidence 999999854
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=7.1e-08 Score=88.36 Aligned_cols=63 Identities=6% Similarity=-0.145 Sum_probs=52.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+..+||+|||||.++..++++-+...|+|+|+|+++|++|++|... .+ -..|+.+++++....
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~-n~--l~~~~~~~~~~~~~~ 124 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ-NN--LSDLIKVVKVPQKTL 124 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-TT--CTTTEEEEECCTTCS
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH-hC--CCcceeeeeeccHHh
Confidence 4679999999999999999998888999999999999999998533 21 235899999876544
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.50 E-value=7.2e-08 Score=87.25 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=72.2
Q ss_pred CcccccCCCccHhHHHHHHhC------CCCeEEEEeCCHHHHHHHHHhcccc-ccCCCCcceEEEeccCCCchhhhhccc
Q 045407 115 LHLQEDFCGTALLSTEWLRSD------SRRTAVGLDLDLEALEWCMENNLNK-VGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g------~~~tVvGVDLS~emL~~A~e~~~~k-l~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
.+|||+|||||-+|+-+++.- ...+|++||.++++++.|+++.... +...+..+|.++++|..+-.
T Consensus 82 ~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~------- 154 (223)
T d1r18a_ 82 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY------- 154 (223)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-------
T ss_pred CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc-------
Confidence 579999999999998888762 1237999999999999998873210 00012247899999965432
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
. ...+||+|++.. ++..+. + ...+.|+
T Consensus 155 ----------~---------------------------------~~~~fD~Iiv~~-a~~~~p--~-------~l~~~Lk 181 (223)
T d1r18a_ 155 ----------P---------------------------------PNAPYNAIHVGA-AAPDTP--T-------ELINQLA 181 (223)
T ss_dssp ----------G---------------------------------GGCSEEEEEECS-CBSSCC--H-------HHHHTEE
T ss_pred ----------c---------------------------------cccceeeEEEEe-echhch--H-------HHHHhcC
Confidence 0 145799998865 444333 1 3467998
Q ss_pred CCCcEEEEecc
Q 045407 268 KKGGIFVMDLY 278 (382)
Q Consensus 268 ~pGGiFVfDl~ 278 (382)
+||++|+=+.
T Consensus 182 -~gG~lV~pvg 191 (223)
T d1r18a_ 182 -SGGRLIVPVG 191 (223)
T ss_dssp -EEEEEEEEES
T ss_pred -CCcEEEEEEe
Confidence 9999998654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.46 E-value=7.3e-08 Score=89.68 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=80.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc------ccCCCCcceEEEeccCCCchhhhhc
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK------VGADGYSRISLFHGNVLQPLEAKLV 185 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k------l~~d~~~RI~l~~gDV~~~~~~~~~ 185 (382)
..|.+||-+|+|.|..+.++++... .+|+.||||++++++|++..... .......|+.++.+|.+....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~---- 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---- 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH----
T ss_pred CCCceEEEecCCchHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh----
Confidence 4488999999999999999998876 48999999999999999753210 001123589999999865430
Q ss_pred ccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHH
Q 045407 186 RYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVL 263 (382)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~ 263 (382)
...+||+|+.=.+ .-......| ..+|+.++
T Consensus 146 ----------------------------------------------~~~~yDvIi~D~~--~~~~~~~~L~t~eF~~~~~ 177 (276)
T d1mjfa_ 146 ----------------------------------------------NNRGFDVIIADST--DPVGPAKVLFSEEFYRYVY 177 (276)
T ss_dssp ----------------------------------------------HCCCEEEEEEECC--CCC-----TTSHHHHHHHH
T ss_pred ----------------------------------------------ccCCCCEEEEeCC--CCCCCcccccCHHHHHhhH
Confidence 0356999986332 221222222 57899999
Q ss_pred hhccCCCcEEEEec
Q 045407 264 HALSKKGGIFVMDL 277 (382)
Q Consensus 264 ~~L~~pGGiFVfDl 277 (382)
++|+ |||+||+-.
T Consensus 178 ~~L~-~~Gv~v~q~ 190 (276)
T d1mjfa_ 178 DALN-NPGIYVTQA 190 (276)
T ss_dssp HHEE-EEEEEEEEE
T ss_pred hhcC-CCceEEEec
Confidence 9999 999999965
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.45 E-value=2.9e-07 Score=80.09 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=48.5
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
++||||||||.++.|-+.+|.. .|+.||.|..++++.++| .++++.. .....++..|+.+
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~N-i~~l~~~-~~~~~~~~~d~~~ 105 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKN-LQTLKCS-SEQAEVINQSSLD 105 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHH-HHHTTCC-TTTEEEECSCHHH
T ss_pred eEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhH-Hhhhccc-ccccccccccccc
Confidence 6999999999999999999985 999999999999999987 4445432 2356677777644
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.40 E-value=3e-07 Score=85.39 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcc
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-----DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSR 168 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-----g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R 168 (382)
|...+.++..+...+.....+.+|+|.|||||.+.+.++++ .....++|+|+|+.|+..|+.+... ....
T Consensus 98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~-----~~~~ 172 (328)
T d2f8la1 98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-----QRQK 172 (328)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-----HTCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH-----hhhh
Confidence 55555667666665555555678999999999999887643 2334699999999999999887532 1235
Q ss_pred eEEEeccCCCc
Q 045407 169 ISLFHGNVLQP 179 (382)
Q Consensus 169 I~l~~gDV~~~ 179 (382)
..++++|....
T Consensus 173 ~~~~~~d~~~~ 183 (328)
T d2f8la1 173 MTLLHQDGLAN 183 (328)
T ss_dssp CEEEESCTTSC
T ss_pred hhhhccccccc
Confidence 67788775443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=2e-07 Score=87.99 Aligned_cols=113 Identities=16% Similarity=0.061 Sum_probs=82.8
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..|.+||-+|.|.|.++.++++..+..+|+.||||++++++|++......++-...|+.++.+|.+....
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~---------- 157 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR---------- 157 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----------
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh----------
Confidence 4589999999999999999999876668999999999999999864221111123589999999865541
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch-----hcccCChhHHHHHHHHHHhhc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS-----CCCLHKRADLVLYFKHVLHAL 266 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S-----~~yL~~r~dL~~yFr~V~~~L 266 (382)
- ...+||+|++=.+. .+.|.+ ..+|+.++++|
T Consensus 158 ------~---------------------------------~~~~yDvIi~D~~dp~~~~~~~L~t----~efy~~~~~~L 194 (295)
T d1inla_ 158 ------K---------------------------------FKNEFDVIIIDSTDPTAGQGGHLFT----EEFYQACYDAL 194 (295)
T ss_dssp ------G---------------------------------CSSCEEEEEEEC----------CCS----HHHHHHHHHHE
T ss_pred ------c---------------------------------CCCCCCEEEEcCCCCCcCchhhhcc----HHHHHHHHhhc
Confidence 0 13569999964321 122333 57899999999
Q ss_pred cCCCcEEEEecc
Q 045407 267 SKKGGIFVMDLY 278 (382)
Q Consensus 267 ~~pGGiFVfDl~ 278 (382)
+ |||+||+-..
T Consensus 195 ~-~~Gi~v~q~~ 205 (295)
T d1inla_ 195 K-EDGVFSAETE 205 (295)
T ss_dssp E-EEEEEEEECC
T ss_pred C-CCcEEEEecC
Confidence 9 9999999653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=1.1e-06 Score=82.30 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.+....+++-....+|+||+||+|.+|..||+.+. .|+|||+++++++.|++|... .+-.++.++++|+.+
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~----n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARL----NGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHH----TTCCSEEEEECCTTS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHh----cccccceeeecchhh
Confidence 33434444445433346799999999999999999884 799999999999999998532 244579999999866
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
..
T Consensus 272 ~~ 273 (358)
T d1uwva2 272 DV 273 (358)
T ss_dssp CC
T ss_pred hh
Confidence 43
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.26 E-value=1.4e-06 Score=79.24 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.-+.++... +.-....+|||+|||||.||..|++.+. .|++|++|+.+.+..+++.. ...++.++++|+++
T Consensus 8 ~i~~~iv~~-~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~------~~~n~~i~~~D~l~ 78 (235)
T d1qama_ 8 HNIDKIMTN-IRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLV------DHDNFQVLNKDILQ 78 (235)
T ss_dssp HHHHHHHTT-CCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTT------TCCSEEEECCCGGG
T ss_pred HHHHHHHHh-cCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhh------cccchhhhhhhhhh
Confidence 344555543 3333456899999999999999999985 79999999999999988752 23589999999988
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
.+
T Consensus 79 ~~ 80 (235)
T d1qama_ 79 FK 80 (235)
T ss_dssp CC
T ss_pred cc
Confidence 76
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.26 E-value=4.9e-07 Score=84.82 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=83.2
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...|.+||=+|-|.|.++.++++..+-..|++||||++++++|++........-...|+.++.+|-++.-.
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~--------- 148 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK--------- 148 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH---------
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh---------
Confidence 34588999999999999999999866568999999999999999864210011123689999999765441
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~ 268 (382)
+....+||+|+.=.+.- ......| ..+|+.++++|+
T Consensus 149 ---------------------------------------~~~~~~yDvIi~D~~dp--~~~~~~L~t~eF~~~~~~~L~- 186 (290)
T d1xj5a_ 149 ---------------------------------------NAAEGSYDAVIVDSSDP--IGPAKELFEKPFFQSVARALR- 186 (290)
T ss_dssp ---------------------------------------TSCTTCEEEEEECCCCT--TSGGGGGGSHHHHHHHHHHEE-
T ss_pred ---------------------------------------hccccCccEEEEcCCCC--CCcchhhCCHHHHHHHHHhcC-
Confidence 01135799988643321 1111222 568999999999
Q ss_pred CCcEEEEec
Q 045407 269 KGGIFVMDL 277 (382)
Q Consensus 269 pGGiFVfDl 277 (382)
|||+||+=+
T Consensus 187 ~~Gi~v~q~ 195 (290)
T d1xj5a_ 187 PGGVVCTQA 195 (290)
T ss_dssp EEEEEEEEC
T ss_pred CCcEEEEec
Confidence 999999965
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=5.5e-07 Score=84.37 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=82.7
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...|.++|=+|-|.|.++.++++..+..+|+.||||++++++|++......+.-...|+.++.+|.+....
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~--------- 146 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK--------- 146 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---------
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh---------
Confidence 45689999999999999999998765569999999999999999864210011123599999999766541
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~ 268 (382)
- ...+||+|++=.+.=. .....| ..+|+.+.++|+
T Consensus 147 -------~---------------------------------~~~~yDvIi~D~~~p~--~~~~~L~t~eF~~~~~~~L~- 183 (285)
T d2o07a1 147 -------Q---------------------------------NQDAFDVIITDSSDPM--GPAESLFKESYYQLMKTALK- 183 (285)
T ss_dssp -------T---------------------------------CSSCEEEEEEECC-------------CHHHHHHHHHEE-
T ss_pred -------c---------------------------------CCCCCCEEEEcCCCCC--CcccccccHHHHHHHHHhcC-
Confidence 0 1357999987543211 111122 357999999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||+||+-..
T Consensus 184 ~~Gi~v~q~~ 193 (285)
T d2o07a1 184 EDGVLCCQGE 193 (285)
T ss_dssp EEEEEEEEEE
T ss_pred CCCeEEEecc
Confidence 9999999654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.20 E-value=8.1e-07 Score=84.58 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=80.8
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...|.+||-+|-|.|.++.++++..+-.+|+.||||++++++|++......++-...|+.++.+|.++...
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~--------- 174 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK--------- 174 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---------
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH---------
Confidence 34588999999999999999999776568999999999999999864221111123589999999765541
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~ 268 (382)
- ...+||+|+.=.+.- ......| ..+|+.++++|+
T Consensus 175 -------~---------------------------------~~~~yDvII~D~~dp--~~~~~~L~t~eFy~~~~~~L~- 211 (312)
T d2b2ca1 175 -------N---------------------------------HKNEFDVIITDSSDP--VGPAESLFGQSYYELLRDALK- 211 (312)
T ss_dssp -------H---------------------------------CTTCEEEEEECCC---------------HHHHHHHHEE-
T ss_pred -------h---------------------------------CCCCCCEEEEcCCCC--CCcchhhhhHHHHHHHHhhcC-
Confidence 0 145799999743221 1111222 567999999999
Q ss_pred CCcEEEEec
Q 045407 269 KGGIFVMDL 277 (382)
Q Consensus 269 pGGiFVfDl 277 (382)
|||+||+-.
T Consensus 212 ~~Gi~v~q~ 220 (312)
T d2b2ca1 212 EDGILSSQG 220 (312)
T ss_dssp EEEEEEEEC
T ss_pred CCcEEEEec
Confidence 999999954
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=1e-06 Score=81.97 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=82.9
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..|.+||-+|-|.|.++.++++..+..+|+.||||+++++.|++.....-++-...|+.++.+|.+....
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~---------- 143 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA---------- 143 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH----------
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh----------
Confidence 4588999999999999999998765568999999999999999974221122234689999999866541
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh----cccCChhHHHHHHHHHHhhcc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC----CCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~----~yL~~r~dL~~yFr~V~~~L~ 267 (382)
- ...+||+|+.=.+.- .-|.+ ..+|+.+.+.|+
T Consensus 144 ------~---------------------------------~~~~yDvIi~D~~~p~~~~~~L~t----~eFy~~~~~~L~ 180 (274)
T d1iy9a_ 144 ------K---------------------------------SENQYDVIMVDSTEPVGPAVNLFT----KGFYAGIAKALK 180 (274)
T ss_dssp ------T---------------------------------CCSCEEEEEESCSSCCSCCCCCST----THHHHHHHHHEE
T ss_pred ------h---------------------------------cCCCCCEEEEcCCCCCCcchhhcc----HHHHHHHHhhcC
Confidence 0 135699998643221 11222 468999999999
Q ss_pred CCCcEEEEec
Q 045407 268 KKGGIFVMDL 277 (382)
Q Consensus 268 ~pGGiFVfDl 277 (382)
|||+||+=.
T Consensus 181 -~~Gv~v~q~ 189 (274)
T d1iy9a_ 181 -EDGIFVAQT 189 (274)
T ss_dssp -EEEEEEEEC
T ss_pred -CCceEEEec
Confidence 999999854
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.11 E-value=1.6e-07 Score=86.19 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+.++... +.-....+|||+|||||.||..|++.+. .|++||+|+.|++.++++.. ...++.++++|++++
T Consensus 17 ii~kIv~~-~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~------~~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 17 VLNQIIKQ-LNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLK------LNTRVTLIHQDILQF 87 (245)
T ss_dssp THHHHHHH-CCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTT------TCSEEEECCSCCTTT
T ss_pred HHHHHHHh-cCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhh------hccchhhhhhhhhcc
Confidence 34454443 3333346799999999999999999985 69999999999987766531 235899999999887
Q ss_pred h
Q 045407 180 L 180 (382)
Q Consensus 180 ~ 180 (382)
+
T Consensus 88 ~ 88 (245)
T d1yuba_ 88 Q 88 (245)
T ss_dssp T
T ss_pred c
Confidence 7
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.06 E-value=8.6e-07 Score=76.28 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=48.1
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS 170 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~ 170 (382)
+=|..=+.++.+.+.. ....+|||.|||||.++..++++ .....++|+|+++.++.+++ ...
T Consensus 2 ~TP~~i~~~m~~l~~~----~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-------------~~~ 64 (223)
T d2ih2a1 2 ETPPEVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-------------WAE 64 (223)
T ss_dssp CCCHHHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-------------TEE
T ss_pred CCCHHHHHHHHHhcCC----CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-------------cce
Confidence 3455556666665432 23457999999999998887654 44457999999997664332 345
Q ss_pred EEeccCCCch
Q 045407 171 LFHGNVLQPL 180 (382)
Q Consensus 171 l~~gDV~~~~ 180 (382)
++++|.....
T Consensus 65 ~~~~~~~~~~ 74 (223)
T d2ih2a1 65 GILADFLLWE 74 (223)
T ss_dssp EEESCGGGCC
T ss_pred eeeeehhccc
Confidence 6777765443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.93 E-value=1.2e-05 Score=73.02 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=41.4
Q ss_pred CCcccccCCCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|..|||+|+++|.-+..|+. .+...+++|+|+++.....+. ....+|.+++||..++.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---------~~~~~I~~i~gDs~~~~ 142 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---------SDMENITLHQGDCSDLT 142 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---------GGCTTEEEEECCSSCSG
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---------ccccceeeeecccccHH
Confidence 88999999999965554442 356679999999985432111 12358999999987665
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=6.6e-06 Score=75.60 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=52.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAK 183 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~ 183 (382)
...|+|+|||+|.||..|++++. +|++|++|+.+++..+++.. ...++.++++|++++++..
T Consensus 22 ~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~------~~~~~~ii~~D~l~~~~~~ 83 (252)
T d1qyra_ 22 GQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPF------LGPKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp TCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTT------TGGGEEEECSCGGGCCHHH
T ss_pred CCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhh------hccchhHHhhhhhhhcccc
Confidence 34689999999999999999985 69999999999998877532 2358999999999887543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.85 E-value=4e-05 Score=67.08 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=76.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..++|..||+|-+|..+++.+ .+|+|+|.|++||..|++.. ..++.+++++-.++... +.
T Consensus 20 ~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~--------~~~~~~~~~~f~~~~~~----------l~ 79 (182)
T d1wg8a2 20 GVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLH--------LPGLTVVQGNFRHLKRH----------LA 79 (182)
T ss_dssp CEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC--------CTTEEEEESCGGGHHHH----------HH
T ss_pred CEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhcc--------ccceeEeehHHHHHHHH----------HH
Confidence 468999999999999999986 47999999999999998753 14899999997766521 00
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc-cchhcccCC----hhHHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF-NYSCCCLHK----RADLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af-n~S~~yL~~----r~dL~~yFr~V~~~L~~p 269 (382)
. +....+|.|+.= ..|-.-|.+ ...+...+..+...|+ +
T Consensus 80 ~-----------------------------------~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk-~ 123 (182)
T d1wg8a2 80 A-----------------------------------LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLA-P 123 (182)
T ss_dssp H-----------------------------------TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEE-E
T ss_pred H-----------------------------------cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhC-C
Confidence 0 113557777652 222222222 2345667888899999 8
Q ss_pred CcEEEEecc
Q 045407 270 GGIFVMDLY 278 (382)
Q Consensus 270 GGiFVfDl~ 278 (382)
||.+++=.+
T Consensus 124 gg~~~ii~f 132 (182)
T d1wg8a2 124 GGRLVVIAF 132 (182)
T ss_dssp EEEEEEEEC
T ss_pred CCeEEEEec
Confidence 998886333
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=4.9e-05 Score=70.73 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
-..+.++... ++-..-.+|+|+|||+|.||..|++++. +|++|.+|+.+++..+++... .....++.++++|++
T Consensus 7 ~~i~~kIv~~-~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~---~~~~~~~~~i~~D~l 80 (278)
T d1zq9a1 7 PLIINSIIDK-AALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQG---TPVASKLQVLVGDVL 80 (278)
T ss_dssp HHHHHHHHHH-TCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT---STTGGGEEEEESCTT
T ss_pred HHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhh---hccccchhhhHHHHh
Confidence 3445555553 3322235799999999999999999985 799999999999988876422 112258999999998
Q ss_pred Cch
Q 045407 178 QPL 180 (382)
Q Consensus 178 ~~~ 180 (382)
..+
T Consensus 81 ~~~ 83 (278)
T d1zq9a1 81 KTD 83 (278)
T ss_dssp TSC
T ss_pred hhh
Confidence 776
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.59 E-value=4.8e-05 Score=73.47 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=39.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
+.+|||.+||||..+++||+......|+.+|+|+++++|+++|.
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~ 89 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNV 89 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHH
Confidence 55799999999999999998655568999999999999999875
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.56 E-value=0.00017 Score=69.36 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=50.5
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-------------CCeEEEEeCCHHHHHHHHHhccccccCCCCc
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-------------RRTAVGLDLDLEALEWCMENNLNKVGADGYS 167 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-------------~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~ 167 (382)
|.++.-..+......+|+|.+||||.+.+...+.-. ...+.|+|+++.+...|+-+..- ......
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l--~g~~~~ 227 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--HGIGTD 227 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH--TTCCSS
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh--cCCccc
Confidence 333333333333346799999999999988766421 12499999999999999887532 222233
Q ss_pred ceEEEeccCCCc
Q 045407 168 RISLFHGNVLQP 179 (382)
Q Consensus 168 RI~l~~gDV~~~ 179 (382)
...+.++|.+..
T Consensus 228 ~~~i~~~d~l~~ 239 (425)
T d2okca1 228 RSPIVCEDSLEK 239 (425)
T ss_dssp CCSEEECCTTTS
T ss_pred cceeecCchhhh
Confidence 566777776543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00091 Score=57.84 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=73.1
Q ss_pred CcccccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..|+||||++|..+...++ .+....|+|+|+-+ ... ...+.++++|+.+...... +
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~----------~~~-----i~~~~~~~~d~~~~~~~~~--------~ 80 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP----------MDP-----IVGVDFLQGDFRDELVMKA--------L 80 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC----------CCC-----CTTEEEEESCTTSHHHHHH--------H
T ss_pred CeEEEEeccCCcceEEEEeeccccceEEEeeccc----------ccc-----cCCceEeecccccchhhhh--------h
Confidence 4689999999999987775 45667899999876 111 1357899999877551100 0
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc---cchhcccCCh----hHHHHHHHHHHhhc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF---NYSCCCLHKR----ADLVLYFKHVLHAL 266 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af---n~S~~yL~~r----~dL~~yFr~V~~~L 266 (382)
... +...++|+|+|= +.|=.+-.+. .=+...+.-+.+.|
T Consensus 81 ~~~----------------------------------~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~L 126 (180)
T d1ej0a_ 81 LER----------------------------------VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVL 126 (180)
T ss_dssp HHH----------------------------------HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred hhh----------------------------------ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhcc
Confidence 000 013568888763 3332222221 22345677788899
Q ss_pred cCCCcEEEEeccCCCchhh
Q 045407 267 SKKGGIFVMDLYGGTSSEQ 285 (382)
Q Consensus 267 ~~pGGiFVfDl~gg~s~e~ 285 (382)
+ +||.||+=++.|.....
T Consensus 127 k-~gG~fV~K~F~g~~~~~ 144 (180)
T d1ej0a_ 127 A-PGGSFVVKVFQGEGFDE 144 (180)
T ss_dssp E-EEEEEEEEEESSTTHHH
T ss_pred C-CCCcEEEEEecCccHHH
Confidence 9 99999999987765443
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.60 E-value=0.0026 Score=56.44 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=45.4
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|+|||||-|-++.-|-+.|.+ .|.++|+++.+.+.-+.|+. -.++++|+.++.
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~-~~~a~e~d~~a~~~~~~N~~----------~~~~~~Di~~~~ 55 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFR-IICANEYDKSIWKTYESNHS----------AKLIKGDISKIS 55 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCE-EEEEEECCHHHHHHHHHHCC----------SEEEESCTTTSC
T ss_pred eEEEeCcCcCHHHHHHHHCCCE-EEEEEeCCHHHHHHHHHHCC----------CCCccCChhhCC
Confidence 4789999999999999999985 67799999999998877751 146789998876
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0033 Score=55.68 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=73.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+++|+|+|.|.=++.||-..|..+|+.||-+.-=.+..++-. .+++ -.++..+++.+.+..
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~-~~L~---L~nv~v~~~R~E~~~------------- 128 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQ-HELK---LENIEPVQSRVEEFP------------- 128 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHTT---CSSEEEEECCTTTSC-------------
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHH-HHcC---Ccceeeeccchhhhc-------------
Confidence 35799999999999999999999889999999987776655532 2232 246899998886654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+||+|+|=.++ .+...+.-+...|+ +||.|
T Consensus 129 --------------------------------------~~~~fD~V~sRA~~--------~~~~ll~~~~~~l~-~~g~~ 161 (207)
T d1jsxa_ 129 --------------------------------------SEPPFDGVISRAFA--------SLNDMVSWCHHLPG-EQGRF 161 (207)
T ss_dssp --------------------------------------CCSCEEEEECSCSS--------SHHHHHHHHTTSEE-EEEEE
T ss_pred --------------------------------------cccccceehhhhhc--------CHHHHHHHHHHhcC-CCcEE
Confidence 13579999885432 34556666677787 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
|+
T Consensus 162 ~~ 163 (207)
T d1jsxa_ 162 YA 163 (207)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.0042 Score=61.13 Aligned_cols=44 Identities=27% Similarity=0.197 Sum_probs=34.1
Q ss_pred CcccccCCCccHhHHHHHHhCC------------------CCeEEEEeCCHHHHHHHHHhcc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS------------------RRTAVGLDLDLEALEWCMENNL 158 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~------------------~~tVvGVDLS~emL~~A~e~~~ 158 (382)
.+|+|.+||||.+.+...+.-. ...+.|+|+++.+...|+-+..
T Consensus 166 ~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 166 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred hhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 4799999999999877554210 1248999999999999998753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.32 E-value=0.0028 Score=55.99 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=37.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
-.|||.|||+|..+..-.+.| +..+|+|||++..+.|+++.
T Consensus 252 diVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl 292 (320)
T d1booa_ 252 DLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRF 292 (320)
T ss_dssp CEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGG
T ss_pred CEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHH
Confidence 479999999999998888888 57999999999999999884
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0098 Score=54.54 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=47.9
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||++||+|.-|+.+|.. +....|+++|+|+.=|...+++. .++ +...+.+++.|.+.+.
T Consensus 96 ~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l-~r~---g~~~~~~~~~d~~~~~ 158 (293)
T d2b9ea1 96 SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL-ARA---GVSCCELAEEDFLAVS 158 (293)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHT---TCCSEEEEECCGGGSC
T ss_pred ceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHH-Hhc---Cccceeeeehhhhhhc
Confidence 46999999999998888754 44568999999999998887764 333 3356888998876554
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0024 Score=57.31 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=47.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRT-AVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~t-VvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|..++|||||.|-++.-|-+.|..++ |.++|+++.+.+.-+.|+. ...++.+|+.++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---------~~~~~~~di~~~~ 60 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGIT 60 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---------CCCcccCchhhCC
Confidence 77899999999999999888897544 6699999999998887751 2457888988776
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0038 Score=58.20 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=49.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
...|+|+|.|+|.||..|+.++--..|++|++|+.++..-++.. . ..++.++++|.....
T Consensus 44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~-----~--~~~~~ii~~D~l~~~ 103 (322)
T d1i4wa_ 44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-----E--GSPLQILKRDPYDWS 103 (322)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-----T--TSSCEEECSCTTCHH
T ss_pred CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc-----c--CCCcEEEeCchhhcc
Confidence 45799999999999999998853247999999999999887763 1 247999999998765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.01 E-value=0.0052 Score=53.50 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..+.++++++. .....|||.|||+|..+..-.+.| ++.+|+|||++..+.|+++.
T Consensus 195 ~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri 249 (279)
T d1eg2a_ 195 AVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQL 249 (279)
T ss_dssp HHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHH
T ss_pred hHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHH
Confidence 34445555543 112469999999999998888888 58999999999999999884
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.85 E-value=0.0072 Score=51.89 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=36.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|||.|||+|..+..-.+.| +..+|+||+++-.+.|+++
T Consensus 214 d~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 214 DLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp CEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred CEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHH
Confidence 369999999999988888887 5899999999999999987
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.59 E-value=0.0067 Score=54.48 Aligned_cols=55 Identities=16% Similarity=0.030 Sum_probs=45.2
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+.+++|||||-|-++.-|-+.|.+ .|.++|+++.+++.-+.|... ..++|++++.
T Consensus 11 ~lrv~~lFsG~Gg~~~gl~~aG~~-~v~a~e~d~~a~~~~~~N~~~-----------~~~~Di~~~~ 65 (327)
T d2c7pa1 11 GLRFIDLFAGLGGFRLALESCGAE-CVYSNEWDKYAQEVYEMNFGE-----------KPEGDITQVN 65 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCE-EEEEECCCHHHHHHHHHHHSC-----------CCBSCGGGSC
T ss_pred CCeEEEECccccHHHHHHHHCCCe-EEEEEeCCHHHHHHHHHHCCC-----------CCcCchhcCc
Confidence 467999999999999999999985 677899999999988887522 1368887766
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.035 Score=50.45 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
...|||+++|.|.=|+.++..+....|+++|+|+.=|...+++.
T Consensus 103 g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~ 146 (284)
T d1sqga2 103 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNL 146 (284)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHH
T ss_pred cceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhh
Confidence 35799999999999999998888788999999999998888764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.57 E-value=0.05 Score=50.18 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=57.4
Q ss_pred chHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhcccc
Q 045407 82 SKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
..+.+|..=--..+...+-+.-..+. -.....|||++||.|.=|+.++.... +..++++|+++.-+....++. .+
T Consensus 88 ~~~~~~~~G~~~vQD~aS~l~~~~l~---~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~-~r 163 (313)
T d1ixka_ 88 TSTPEFLTGLIYIQEASSMYPPVALD---PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNL-SR 163 (313)
T ss_dssp GGSHHHHTTSEEECCHHHHHHHHHHC---CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH-HH
T ss_pred ccCHhhhhceEEEecccccchhhccc---CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHH-HH
Confidence 45556655322233334544444332 12124699999999998887775432 457999999999998887764 33
Q ss_pred ccCCCCcceEEEeccCCCch
Q 045407 161 VGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~ 180 (382)
++ ...+.+++.|-+.+.
T Consensus 164 ~~---~~~i~~~~~d~~~~~ 180 (313)
T d1ixka_ 164 LG---VLNVILFHSSSLHIG 180 (313)
T ss_dssp HT---CCSEEEESSCGGGGG
T ss_pred HH---hhccccccccccccc
Confidence 33 246777777765543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.14 E-value=0.028 Score=51.06 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=46.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHH---HHHHHHhccccc--cCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEA---LEWCMENNLNKV--GADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~em---L~~A~e~~~~kl--~~d~~~RI~l~~gDV~~~~ 180 (382)
+.+|||..||.|+.+..+|..|. +|++++-++.+ |+.+.+++.... ......||+++++|..+..
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L 158 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred CCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHH
Confidence 34799999999999999999995 69999999865 555554432210 0001248999999976554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.07 E-value=0.15 Score=40.20 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||.|+++..+++ .| +.|+.||.|++.++-+.++. .+.+++||..++.
T Consensus 6 ~G~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~~ 56 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEI----------DALVINGDCTKIK 56 (132)
T ss_dssp ECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHH
T ss_pred ECCCHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhhh----------hhhhccCcccchh
Confidence 677777666554 55 57999999999998776652 3568999998887
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.87 E-value=0.076 Score=45.32 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=35.9
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..||-.|||+ |.+++.+|+.-.-..|+++|.+++-|+.|++.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence 4688899999 88999999764445899999999999999876
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.73 E-value=0.37 Score=43.92 Aligned_cols=132 Identities=11% Similarity=-0.032 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+.+++..++... +.-|.-||||-=.-.-++. .....+++=||+ |+++++-++. +.+.+.....+..++..|+++
T Consensus 76 r~~D~~~~~~~~~g-~~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~-l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 76 NFFDTYFNNAVIDG-IRQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTT-LAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHTT-CCEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHH-HHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHhhC-CCeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHH-HHhcCCCCCceEEEecccccc
Confidence 45555555544222 3345569999887766653 233446777774 7788776554 333333334567888888765
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
+|... |. ...|. +..-.++...-.++||.. +++...
T Consensus 152 -~~~~~-------------L~----------------------------~~g~d-~~~ptl~i~EGvl~YL~~-~~~~~l 187 (297)
T d2uyoa1 152 -DWPPA-------------LR----------------------------SAGFD-PSARTAWLAEGLLMYLPA-TAQDGL 187 (297)
T ss_dssp -CHHHH-------------HH----------------------------HTTCC-TTSCEEEEECSCGGGSCH-HHHHHH
T ss_pred -hHHHH-------------HH----------------------------hcCCC-CCCCEEEEEccccccCCH-HHHHHH
Confidence 33211 10 01121 222345555557778665 789999
Q ss_pred HHHHHhhccCCCcEEEEeccC
Q 045407 259 FKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~g 279 (382)
|+.+.+... ||+.++||..+
T Consensus 188 l~~i~~~~~-~GS~l~~d~~~ 207 (297)
T d2uyoa1 188 FTEIGGLSA-VGSRIAVETSP 207 (297)
T ss_dssp HHHHHHTCC-TTCEEEEECCC
T ss_pred HHHHHHhCC-CCCEEEEEecc
Confidence 999999988 99999999765
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.43 E-value=0.074 Score=44.06 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=34.0
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|||+ |.+++.+|+.---.+|+++|.+++-+++|++-
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l 72 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI 72 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence 4677778885 88999999875423799999999999999874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.27 E-value=0.29 Score=39.58 Aligned_cols=41 Identities=15% Similarity=-0.057 Sum_probs=34.5
Q ss_pred CcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|+=.||| .|.+++.+|+.-- ++|+++|.+++-+++|++.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ 69 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNC 69 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred CEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHc
Confidence 356667888 6888898988754 6999999999999999985
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.07 E-value=0.28 Score=39.63 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=32.4
Q ss_pred ccccCCC--ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 117 LQEDFCG--TALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 117 LLEl~CG--TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
|+=+||| .+.++..|.+.|+..+|+|.|.+++.++.|++..
T Consensus 4 I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~ 46 (171)
T d2g5ca2 4 VLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG 46 (171)
T ss_dssp EEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT
T ss_pred EEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh
Confidence 3335776 3456667888898889999999999999999874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=93.01 E-value=0.22 Score=45.43 Aligned_cols=62 Identities=16% Similarity=0.046 Sum_probs=38.6
Q ss_pred CCCccEEEEcc--chhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCc--hhhhh-HhhhccCC
Q 045407 233 LPARDIICAFN--YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTS--SEQKL-RLQRRFAN 295 (382)
Q Consensus 233 ~~~fDiV~afn--~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s--~e~kl-~~~R~~~~ 295 (382)
....|.|+|=. .|-+.-.+.+--...+.-+.+.|+ |||-||+=++.++. ...+| ++++.|.+
T Consensus 130 ~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk-~gg~FvvKVl~py~~~v~e~le~lq~~fgg 196 (257)
T d2p41a1 130 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCVKVLNPYMSSVIEKMEALQRKHGG 196 (257)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEEEESCCCSHHHHHHHHHHHHHHCC
T ss_pred CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcc-cCCEEEEEECCCCChHHHHHHHHHHHHhCC
Confidence 35578888763 133333333344466777788998 99999998886553 22222 34676655
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.65 E-value=0.12 Score=43.08 Aligned_cols=42 Identities=10% Similarity=-0.049 Sum_probs=34.3
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|+=.|||. |.+++.||+.---.+|+++|.+++-+++|++-
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l 71 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY 71 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence 3565689998 99999999965324799999999999999875
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=91.96 E-value=0.048 Score=49.41 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=48.9
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHhCC----------------------------------------CCeEEEEeCCHH
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRSDS----------------------------------------RRTAVGLDLDLE 148 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~g~----------------------------------------~~tVvGVDLS~e 148 (382)
.+...+..|+|.+||+|.|.+|.|-... ...++|.|+|+.
T Consensus 46 ~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ 125 (249)
T d1o9ga_ 46 LPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE 125 (249)
T ss_dssp SSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred hcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHH
Confidence 4556677899999999999988654211 124679999999
Q ss_pred HHHHHHH--hccccccCCCCcceEEEeccCCCch
Q 045407 149 ALEWCME--NNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 149 mL~~A~e--~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|+.|+. .|....+- ...|.+.++|+.++.
T Consensus 126 ai~~A~~~r~n~~~Agl--~~~i~i~~~d~f~~~ 157 (249)
T d1o9ga_ 126 AAQAARRLRERLTAEGG--ALPCAIRTADVFDPR 157 (249)
T ss_dssp HHHHHHHHHHHHHHTTS--SCCEEEEECCTTCGG
T ss_pred HHHHHHHHHHHHHHcCC--CceeeeeecchhccC
Confidence 9999953 23332222 246899999987765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=0.044 Score=45.11 Aligned_cols=41 Identities=10% Similarity=-0.117 Sum_probs=34.3
Q ss_pred CcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|+-.||| .|.+++.||+.- ..+|+++|.|++-+++|++.
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc
Confidence 467778888 789999998753 36899999999999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=89.96 E-value=0.23 Score=44.38 Aligned_cols=102 Identities=14% Similarity=0.041 Sum_probs=69.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|+|+|+|.|.-++.||=.-+...++-||-+.-=.+.-+.- ..+++ -..+..+++.+.+....
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v-~~~L~---L~n~~i~~~R~E~~~~~----------- 135 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKL-SEALQ---LENTTFCHDRAETFGQR----------- 135 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHT---CSSEEEEESCHHHHTTC-----------
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHH-HHHhC---CCCcEEEeehhhhcccc-----------
Confidence 3579999999999999999887888999999997555443322 12222 23677888776433310
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.. ....||+|+|=-. +.+...+.-+...|+ +||.+
T Consensus 136 --~~----------------------------------~~~~~D~v~sRAv--------a~l~~ll~~~~~~l~-~~g~~ 170 (239)
T d1xdza_ 136 --KD----------------------------------VRESYDIVTARAV--------ARLSVLSELCLPLVK-KNGLF 170 (239)
T ss_dssp --TT----------------------------------TTTCEEEEEEECC--------SCHHHHHHHHGGGEE-EEEEE
T ss_pred --cc----------------------------------ccccceEEEEhhh--------hCHHHHHHHHhhhcc-cCCEE
Confidence 00 1457999998632 245566666778888 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
|+
T Consensus 171 i~ 172 (239)
T d1xdza_ 171 VA 172 (239)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.56 Score=38.13 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=33.6
Q ss_pred CcccccCC--CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFC--GTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~C--GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.|+ |.|.+++.+|+.-- .+|++++-|++-++.+++.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~ 72 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQN 72 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT
T ss_pred CEEEEEeccccccccccccccccC-ccccccccccccccccccc
Confidence 45777776 67899999998753 6899999999999998864
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.24 E-value=0.66 Score=40.52 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=42.3
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchh
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLE 181 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~ 181 (382)
.+|=-|.+.| .++..|++.|. +|+.+|.+++.|+-..+.. + .+..+++.|++++..
T Consensus 8 ~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~----~----~~~~~~~~Dv~~~~~ 66 (253)
T d1hxha_ 8 VALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAEL----G----ERSMFVRHDVSSEAD 66 (253)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH----C----TTEEEECCCTTCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh----C----CCeEEEEeecCCHHH
Confidence 3555576666 57888999995 6999999999988665543 2 367789999998873
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.97 E-value=1 Score=34.90 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=39.6
Q ss_pred CCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||-|+++.++++.-....++.||.+++..+..+.. .+.++.||..++.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----------~~~~i~Gd~~~~~ 53 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----------GANFVHGDPTRVS 53 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----------TCEEEESCTTSHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----------CccccccccCCHH
Confidence 78899999999976667899999999998866544 3678999998876
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=88.94 E-value=0.97 Score=36.21 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=28.1
Q ss_pred cCCC--ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 120 DFCG--TALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 120 l~CG--TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
+||| .+.++..|.+.|+ +|+|.|.+++.++.|.+..
T Consensus 6 IG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~ 43 (165)
T d2f1ka2 6 VGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ 43 (165)
T ss_dssp ECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT
T ss_pred EeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh
Confidence 3665 4566778888885 7999999999999887763
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=87.49 E-value=0.35 Score=37.57 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=32.5
Q ss_pred CCccHh----HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALL----STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~L----S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||-|++ +..|.+.|. .|+.+|.|++.++.+++.. ...+.||..++.
T Consensus 6 iG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~~~-----------~~~~~gd~~~~~ 55 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYASYA-----------THAVIANATEEN 55 (134)
T ss_dssp ECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTTTC-----------SEEEECCTTCTT
T ss_pred ECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHHhC-----------Ccceeeecccch
Confidence 555664 445556675 6999999999998765431 246789988876
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.87 E-value=0.8 Score=36.84 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=32.8
Q ss_pred CcccccCC--CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFC--GTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~C--GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+|+=.|| |.|.+++.+++.....+|+++|.+++-++.+++.
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~ 72 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA 72 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence 45777786 4678888877755445899999999999999875
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=86.62 E-value=0.58 Score=44.12 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=81.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHH-HHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALE-WCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~-~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|.|+||.+|-.|..+...- .++|. .|++.+ ......++++.-|.-.=++..++++
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~i-----------I~~i~~~~~~~~-----~~~~pe~qvf~nDLP~NDFNtLF~~----- 110 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTEL-----------IKTVEELRKKMG-----RENSPEYQIFLNDLPGNDFNAIFRS----- 110 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTT-----------HHHHHHHHHSSS-----CSSCCEEEEEEEECTTSCHHHHHTT-----
T ss_pred ceEEEEeCCCCCccHHHHHHHH-----------HHHHHHHHHhcC-----CCCCCeEEEEeCCCCcchHHHHHHh-----
Confidence 4679999999999987766432 23332 233222 1112468888877544333333322
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC---------------------
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK--------------------- 251 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~--------------------- 251 (382)
|... ....+.+.++..++.--.+-|+....+++++++ |+-||..
T Consensus 111 ---L~~~-----------~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~-alHWLS~vP~~l~~n~~~i~~~~~~~~~ 175 (359)
T d1m6ex_ 111 ---LPIE-----------NDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQS 175 (359)
T ss_dssp ---TTTS-----------CSCTTCEEEEEEESCSSSCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCT
T ss_pred ---cccc-----------ccCCCCeEEEecCCchhhhcCCCCceEEeeehh-hhhhhhcCCccccCCCCcEEEcCCCCHH
Confidence 2110 001223455566666677788888899999986 6666643
Q ss_pred ---------hhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 252 ---------RADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 252 ---------r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
+.|+...|+.=++-|. |||.+|+=+.|
T Consensus 176 v~~ay~~Qf~~D~~~FL~~Ra~ELv-~GG~mvl~~~g 211 (359)
T d1m6ex_ 176 VLNAYYKQFQEDHALFLRCRAQEVV-PGGRMVLTILG 211 (359)
T ss_dssp TSCCSHHHHHHHHHHHHHHHHHHBC-TTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEEec
Confidence 3477889999999999 99999996653
|
| >d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PTS system fructose IIA component-like superfamily: PTS system fructose IIA component-like family: EIIA-man component-like domain: IIA domain of mannose transporter, IIA-Man species: Escherichia coli [TaxId: 562]
Probab=85.72 E-value=0.78 Score=36.48 Aligned_cols=40 Identities=20% Similarity=0.442 Sum_probs=32.0
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHh
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRL 289 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~ 289 (382)
.+.+++.+-++.+.+.+.+..|++|| |++||+++......
T Consensus 39 ~~~~~~~~~~~~~i~~~~~~~~vliltDl~GGsp~n~~~~~ 79 (129)
T d1pdoa_ 39 ENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRI 79 (129)
T ss_dssp CCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEeccccchhHHHHHH
Confidence 35678999999999999856788888 99999987654443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=85.15 E-value=0.92 Score=36.61 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=31.9
Q ss_pred ccccc-CCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 116 HLQED-FCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 116 ~LLEl-~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
+||=. |.| .|.+++.+|+... .+|+++|.|++-++++++.
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~l 72 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA 72 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH
T ss_pred EEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhc
Confidence 45444 333 7999999998754 7999999999999999865
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.93 E-value=1.5 Score=36.09 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=36.0
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|+=.|||+ |.+++.+++.---..|+.+|.+++=++.|++-
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~ 72 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 72 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence 4567789999 99999999976555899999999999999886
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.30 E-value=0.86 Score=40.85 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=45.9
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=-|++.|. ++..|++.|. +|+.+|.+.+-|+-+.+.....+......++..+++||+++.
T Consensus 14 valITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~ 79 (297)
T d1yxma1 14 VAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE 79 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHH
Confidence 45555776653 5678899995 699999999998876655333233334468999999999987
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=83.89 E-value=0.85 Score=39.91 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=44.5
Q ss_pred ccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=-|++.|. ++..|++.|. +|+.+|.+++.|+...+..... ....++..++.||.++.
T Consensus 7 alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~---~~~~~~~~~~~Dvt~~~ 68 (258)
T d1iy8a_ 7 VLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLET---APDAEVLTTVADVSDEA 68 (258)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH---CTTCCEEEEECCTTSHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhh---CCCCeEEEEeccCCCHH
Confidence 4445666663 7889999995 6999999999998776654331 12347889999999887
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=83.27 E-value=1.1 Score=39.18 Aligned_cols=57 Identities=14% Similarity=0.021 Sum_probs=43.2
Q ss_pred ccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=-|.+.|. ++..|++.|. +|+.+|.+++.|+-+.+... . .+.++..+..|++++.
T Consensus 8 alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~----~-~g~~~~~~~~Dv~~~~ 67 (260)
T d1zema1 8 CLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVR----E-KGVEARSYVCDVTSEE 67 (260)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH----T-TTSCEEEEECCTTCHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH----h-cCCcEEEEEccCCCHH
Confidence 4445666653 7889999995 69999999999987766532 1 2347899999999887
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.65 E-value=3.1 Score=33.34 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=32.6
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|+=.|||+ |.+++.+|+.-.-.+|+++|.+++-|++|++.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~ 70 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 70 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence 3566678875 67777788764434899999999999999875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.04 E-value=2.4 Score=34.82 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=32.7
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|+=.|||. |++++..++.-.-.+|+++|.+++-|++|++.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 3566668875 66677777665446899999999999999987
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.99 E-value=1.4 Score=38.58 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=45.1
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+++-|+-+.+...+ .+. ...++..+++||+++.
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~-~~~-~~~~~~~~~~Dvs~~~ 70 (272)
T d1xkqa_ 7 TVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILK-SGV-SEKQVNSVVADVTTED 70 (272)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT-TTC-CGGGEEEEECCTTSHH
T ss_pred EEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh-cCC-CCCceEEEEccCCCHH
Confidence 3555677766 57889999995 699999999999877765322 111 2347999999999887
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.90 E-value=1.3 Score=38.87 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=44.7
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=-|++.| .++..|++.|. +|+.+|.+.+-|+-+.+.... .+. ...++..+++||+++.
T Consensus 6 ~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~-~~~-~~~~~~~~~~Dv~~~~ 69 (274)
T d1xhla_ 6 SVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILK-AGV-PAEKINAVVADVTEAS 69 (274)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-TTC-CGGGEEEEECCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHH-cCC-CCcceEEEEeeCCCHH
Confidence 3455577776 37889999995 699999999998877665322 111 1247899999999987
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.72 E-value=1.3 Score=38.40 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=41.5
Q ss_pred cCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 120 DFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 120 l~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
-|++.| .++..|++.|. +|+.+|.+.+.|+.+.+...... ...++.+++.|++++.
T Consensus 9 TGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dv~~~~ 67 (254)
T d2gdza1 9 TGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF---EPQKTLFIQCDVADQQ 67 (254)
T ss_dssp ETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS---CGGGEEEEECCTTSHH
T ss_pred eCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhc---CCCcEEEEEeecCCHH
Confidence 354444 36778899995 79999999999988776643321 2358999999999887
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=81.11 E-value=5.1 Score=34.46 Aligned_cols=58 Identities=14% Similarity=-0.040 Sum_probs=41.8
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCC-HHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLD-LEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS-~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=-|++.|. ++..|++.|. +|+.+|.+ .+.++-..+... . .+.++.+++.|++++.
T Consensus 20 ~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~----~-~g~~~~~~~~D~~~~~ 81 (272)
T d1g0oa_ 20 VALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIK----K-NGSDAACVKANVGVVE 81 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH----H-TTCCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHH----h-hCCceeeEeCCCCCHH
Confidence 46667888884 8899999995 69999987 455554443321 1 2247899999999887
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=80.97 E-value=1.6 Score=37.69 Aligned_cols=47 Identities=6% Similarity=-0.137 Sum_probs=37.5
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.+|.+++.|+-..+...+ .+.++..+++||+++.
T Consensus 18 ia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~-----~g~~~~~~~~Dvs~~~ 64 (257)
T d2rhca1 18 IARRLGKEGL--RVFVCARGEEGLRTTLKELRE-----AGVEADGRTCDVRSVP 64 (257)
T ss_dssp HHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHH
T ss_pred HHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeecCCHH
Confidence 7788999995 699999999999876665321 1247899999999887
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=80.86 E-value=1.6 Score=37.79 Aligned_cols=47 Identities=4% Similarity=-0.094 Sum_probs=36.7
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.+|.+++.|+-..+...+ .+.++..+++|++++.
T Consensus 17 ia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~-----~g~~~~~~~~Dv~~~~ 63 (255)
T d1gega_ 17 IALRLVKDGF--AVAIADYNDATAKAVASEINQ-----AGGHAVAVKVDVSDRD 63 (255)
T ss_dssp HHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTSHH
T ss_pred HHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCHH
Confidence 6778899995 699999999998876655321 1247889999999887
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=80.79 E-value=1.6 Score=38.07 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=45.3
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|. +|+.+|.+.+-|+-+.++...+ .+.++.+++.|+++..
T Consensus 27 ~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~----~g~~~~~~~~D~~~~~ 88 (294)
T d1w6ua_ 27 VAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQ----TGNKVHAIQCDVRDPD 88 (294)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH----HSSCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHh----cCCceEEEEecccChH
Confidence 4666688887 68889999995 7999999999887766554322 2347889999998877
|
| >d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PTS system fructose IIA component-like superfamily: PTS system fructose IIA component-like family: EIIA-man component-like domain: PTS system, IIA subunit species: Enterococcus faecalis [TaxId: 1351]
Probab=80.69 E-value=0.89 Score=36.66 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeee
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRH 329 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~ 329 (382)
+.+++..-++.+.+.+. ..|++|| |++||+++.......+..+++..+ . -. +|. ++-.
T Consensus 41 ~~~~~~~~l~~~~~~~~-~~~vliltDl~GGTP~N~a~~~~~~~~~v~vi-s--G~---------NLp--------mlLe 99 (132)
T d3beda1 41 GLSGTQAKLAAILKEAG-NVPTLVLADLKGGTPCNVAMMAMGTYPQLRVV-A--GL---------NLA--------MAIE 99 (132)
T ss_dssp HHHHHHHHHHHHHHHHC-SCCEEEEESSTTSHHHHHHHHHTTTCTTEEEE-E--SC---------CHH--------HHHH
T ss_pred CHHHHHHHHHHHHhhCC-CCCEEEEEecccCChhHHHHHHHhcCCCEEEE-E--CC---------CHH--------HHHH
Confidence 34677788888888887 6778877 999999986544443333444322 1 01 110 1111
Q ss_pred eeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 330 AFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 330 ~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
+.. .|--++.|+.+.+.++|=+.|..+
T Consensus 100 ~~~--~~~~~~~el~~~~~~~g~~~I~~~ 126 (132)
T d3beda1 100 AAV--SPVENVDELAAYLTQIGQSAVTTI 126 (132)
T ss_dssp HHH--CCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHH--cccCCHHHHHHHHHHHHHHhhhee
Confidence 111 133478898888888887777655
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.35 E-value=3.7 Score=35.43 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=45.3
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|==|++.|. ++.+|++.|. +|+.+|.+++-|+...+.... .+.++..+..||+++.
T Consensus 9 v~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~-----~~~~~~~~~~Dvs~~~ 69 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKG-----LGAKVHTFVVDCSNRE 69 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTTCHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh-----cCCcEEEEEeeCCCHH
Confidence 45556777764 8889999995 699999999999877666422 2347899999999987
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=80.14 E-value=1.7 Score=34.47 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCccHhHHH----HHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTE----WLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~e----lar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||-|+++.. |.+.|. .|+.||.+++......+.... ..+.+++||..++.
T Consensus 9 ~G~g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~-------~~~~vi~Gd~~d~~ 62 (153)
T d1id1a_ 9 CGHSILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLG-------DNADVIPGDSNDSS 62 (153)
T ss_dssp ECCSHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHC-------TTCEEEESCTTSHH
T ss_pred ECCCHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhc-------CCcEEEEccCcchH
Confidence 555655444 445564 699999999865443333211 24789999998886
|