Citrus Sinensis ID: 045444

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHcccccccccccccEEEEEEEEcccEEEEEEEEccccEEEccccEEEEEEEEEEEEccccHHHHHHHcccccEEEEEcccccEEEEEcccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHccEEEEEEEccccccccccEEEEcccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHccccccHHHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEccccccccccccEccEEEEEEEEEcccccEEEccHHcccEEEEEcccHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHcccEEEEEEcccccccccccEEEccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGISRDSMHKRRATGGKKKAWRKKRkyelgrqpantklssnktVRRIRVRGGNVKWRALRldtgnyswgseavtrKTRILDVVYNASNNELVRTQTLVKSAIVqvdaapfkQWYLQHYGvdigrkkkavtkketteegegAAAAAEETKKSNHVVRKLEKrqkdrtldphieeqfgagrllacissrpgqcgradgyileGKELEFYMKKLQRKKGK
Flexible Loop (DISEMBL)
mgisrdsmhkrratggkkkawrkkrkyelgrqpantklssnktvrrirvrggnvkwralrldtgnyswgseavtrkTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQhygvdigrkkKAVTKKEtteegegaaaaaeetkksnhvvrklekrqkdrtldphieeqfgagrlLACISSRPGQCGRADGYILEGKELEFYMKklqrkkgk
Low Complexity Region (SEG)
MGISRDSMHkrratggkkkawrkkrkYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRkkkavtkketteegegaaaaaeetkkSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Disordered region (IsUnstruct)
*******************************************VRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR*************************************************QFGAGRLLACISSRPGQCGRADGYILEGKELEFYM*********
Disordered Region (DISOPRED)
MGIS****************WRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIG**********************************************HIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR****
Disordered Region (DISEMBL)
*************************KYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRK***********************************RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMK********
Disordered Region (DISPRO)
******************K**RKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIG**************************KSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q08069	221	40S ribosomal protein S8	N/A	no	1.0	0.981	0.907	1e-113
P49199	220	40S ribosomal protein S8	yes	no	0.995	0.981	0.903	1e-108
Q9FIF3	210	40S ribosomal protein S8-	yes	no	0.903	0.933	0.841	6e-98
O81361	221	40S ribosomal protein S8	N/A	no	0.972	0.954	0.873	2e-92
Q93VG5	222	40S ribosomal protein S8-	no	no	0.958	0.936	0.823	4e-87
Q90YR6	208	40S ribosomal protein S8	N/A	no	0.958	1.0	0.617	2e-70
Q8WQI5	208	40S ribosomal protein S8	N/A	no	0.958	1.0	0.622	3e-69
P62247	208	40S ribosomal protein S8	no	no	0.958	1.0	0.608	6e-68
Q7SYU0	208	40S ribosomal protein S8	N/A	no	0.958	1.0	0.599	9e-68
P62243	208	40S ribosomal protein S8	yes	no	0.958	1.0	0.589	3e-67

>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 204/217 (94%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKK    K+   EG+   AAAEETKKSNHV RKLEKR++ RTLDPHIEEQFG+GRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217

Zea mays (taxid: 4577)

>sp|P49199|RS8_ORYSJ 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 202/217 (93%), Gaps = 1/217 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKKA    +   EG+ A A  EE KKSNHVVRKLEKRQ+ RTLD HIEEQFG+GRL
Sbjct: 121 DIGRKKKA-PAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRL 179

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 180 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 216

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FIF3|RS82_ARATH 40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1

 Score =  356 bits (914), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 175/208 (84%), Positives = 182/208 (87%), Gaps = 12/208 (5%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKK            G A   EE KKSNHV RKLE RQ+ R LD H+EEQF +GRL
Sbjct: 121 DIGRKKK------------GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRL 168

Query: 181 LACISSRPGQCGRADGYILEGKELEFYM 208
           LACI+SRPGQCGRADGYILEGKELEFYM
Sbjct: 169 LACIASRPGQCGRADGYILEGKELEFYM 196

Arabidopsis thaliana (taxid: 3702)

>sp|O81361|RS8_PRUAR 40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1

 Score =  338 bits (866), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/213 (87%), Positives = 193/213 (90%), Gaps = 2/213 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           +IGRKKK    K+ T   E   A  EE KKSNHV  KLEKRQ+ RTLD HIEEQFG G+L
Sbjct: 121 EIGRKKKTAAAKKDTP--EEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKL 178

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQR 213
           LACISSRPGQCG+ADG ILEGKELEFYMKKLQR
Sbjct: 179 LACISSRPGQCGKADGDILEGKELEFYMKKLQR 211

Prunus armeniaca (taxid: 36596)

>sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1

 Score =  320 bits (820), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 173/210 (82%), Positives = 189/210 (90%), Gaps = 2/210 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGR--KKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAG 178
           ++GR  K  + TKK+  E  E A AA EE KKSNH++RK+  RQ+ R+LD HIE+QF +G
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 179 RLLACISSRPGQCGRADGYILEGKELEFYM 208
           RLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYM 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/217 (61%), Positives = 165/217 (76%), Gaps = 9/217 (4%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRD+ HKRR TGGK+K   KKRKYELGR P+NTKL   K +  +RVRGGN K+RALR
Sbjct: 1   MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY +
Sbjct: 60  LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYAL 119

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
            +GRKK A   K T EE +       +  +      K +KR+K+  + P ++EQF  G+L
Sbjct: 120 PLGRKKGA---KLTPEEEDILNKKRSKKVQK-----KFDKRRKNSKISPLLDEQFQQGKL 171

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct: 172 LACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Ictalurus punctatus (taxid: 7998)

>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1

 Score =  261 bits (666), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 135/217 (62%), Positives = 162/217 (74%), Gaps = 9/217 (4%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANTKL   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSE  TRK+RI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY  HY +
Sbjct: 60  LDTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 119

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
            +GRKK A    + TE    A  A    K+S    +K   RQ+   ++  +EEQF  GRL
Sbjct: 120 PLGRKKGA----KLTE----AEDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRL 171

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 172 LACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 208

Spodoptera frugiperda (taxid: 7108)

>sp|P62247|RS8_DANRE 40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2

 Score =  256 bits (655), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 132/217 (60%), Positives = 160/217 (73%), Gaps = 9/217 (4%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRD+ HKRR TGGK+K   KKRKYELGR  ANTK+   + +  IRVRGGN K+RALR
Sbjct: 1   MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRR-IHTIRVRGGNKKYRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY  HY +
Sbjct: 60  LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYAL 119

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
            +GRKK A   K T EE E       +  +    +R+     K   + P +EEQF  G+L
Sbjct: 120 PLGRKKGA---KLTPEEEEILNKKRSKKVQKKFTLRR-----KTAKISPLLEEQFLQGKL 171

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct: 172 LACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Danio rerio (taxid: 7955)

>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3

 Score =  256 bits (654), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 130/217 (59%), Positives = 162/217 (74%), Gaps = 9/217 (4%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRD+ HKRR TGGK+K + KKRKYE GR  ANTK+   + +  +RVRGGN K+RALR
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRR-IHTVRVRGGNKKYRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+  HY +
Sbjct: 60  LDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYAL 119

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
            +GRKK A   K T EE E       +  +  +     E+R+K   + P +EEQF  G+L
Sbjct: 120 PLGRKKGA---KLTPEEEEILNKKRSKKTQKKY-----EERKKTAKISPLLEEQFQQGKL 171

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACI+SRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct: 172 LACIASRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Xenopus laevis (taxid: 8355)

>sp|P62243|RS8_RAT 40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2

 Score =  254 bits (650), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/217 (58%), Positives = 163/217 (75%), Gaps = 9/217 (4%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRD+ HKRR TGGK+K + KKRKYELGR  ANTK+   + +  +RVRGGN K+RALR
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY +
Sbjct: 60  LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
            +GRKK A   K T EE E       +  +  +     ++R+K+  +   +EEQF  G+L
Sbjct: 120 PLGRKKGA---KLTPEEEEILNKKRSKKIQKKY-----DERKKNAKISSLLEEQFQQGKL 171

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACI+SRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct: 172 LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
162464180	221	40S ribosomal protein S8 [Zea mays] gi|6	1.0	0.981	0.907	1e-111
212721342	221	uncharacterized protein LOC100193830 [Ze	1.0	0.981	0.889	1e-109
242072560	220	hypothetical protein SORBIDRAFT_06g00477	0.995	0.981	0.903	1e-108
115457852	221	Os04g0349500 [Oryza sativa Japonica Grou	1.0	0.981	0.903	1e-107
125547847	221	hypothetical protein OsI_15456 [Oryza sa	1.0	0.981	0.903	1e-107
115446173	220	Os02g0489400 [Oryza sativa Japonica Grou	0.995	0.981	0.903	1e-106
968902	220	ribosomal protein S8 [Oryza sativa Japon	0.995	0.981	0.894	1e-106
223975619	214	unknown [Zea mays] gi|413926195|gb|AFW66	0.967	0.981	0.904	1e-106
224127352	220	predicted protein [Populus trichocarpa]	0.986	0.972	0.926	1e-104
388504168	217	unknown [Lotus japonicus]	0.940	0.940	0.898	1e-104

>gi|162464180|ref|NP_001105391.1| 40S ribosomal protein S8 [Zea mays] gi|6226702|sp|Q08069.2|RS8_MAIZE RecName: Full=40S ribosomal protein S8 gi|1498053|gb|AAB06330.1| ribosomal protein S8 [Zea mays] gi|194692698|gb|ACF80433.1| unknown [Zea mays] gi|195605614|gb|ACG24637.1| 40S ribosomal protein S8 [Zea mays] gi|413926193|gb|AFW66125.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926197|gb|AFW66129.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926198|gb|AFW66130.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926206|gb|AFW66138.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926210|gb|AFW66142.1| putative ribosomal protein S8e family protein [Zea mays]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 204/217 (94%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKK    K+   EG+   AAAEETKKSNHV RKLEKR++ RTLDPHIEEQFG+GRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721342|ref|NP_001132384.1| uncharacterized protein LOC100193830 [Zea mays] gi|194694240|gb|ACF81204.1| unknown [Zea mays]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/217 (88%), Positives = 202/217 (93%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA+TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEALTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKK    K+   EG+   A AEETKKSNHV RK+EKRQ+DR LD HIEEQFG+GRL
Sbjct: 121 DIGRKKKVPVAKKDATEGQEGEAIAEETKKSNHVQRKIEKRQQDRALDTHIEEQFGSGRL 180

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACIS+RPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 181 LACISARPGQCGRADGYILEGKELEFYMKKLQRKKGK 217

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242072560|ref|XP_002446216.1| hypothetical protein SORBIDRAFT_06g004770 [Sorghum bicolor] gi|241937399|gb|EES10544.1| hypothetical protein SORBIDRAFT_06g004770 [Sorghum bicolor]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 202/217 (93%), Gaps = 1/217 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA+TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEALTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKK  V KK+  E  EG  A AEETKKSNHV RKLEKRQ+ R LD HIEEQFG+GRL
Sbjct: 121 DIGRKKVPVAKKDAAEGQEG-EAIAEETKKSNHVQRKLEKRQQGRALDTHIEEQFGSGRL 179

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 180 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 216

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115457852|ref|NP_001052526.1| Os04g0349500 [Oryza sativa Japonica Group] gi|32489919|emb|CAE05511.1| OSJNBa0038P21.4 [Oryza sativa Japonica Group] gi|113564097|dbj|BAF14440.1| Os04g0349500 [Oryza sativa Japonica Group] gi|125589973|gb|EAZ30323.1| hypothetical protein OsJ_14370 [Oryza sativa Japonica Group] gi|215686988|dbj|BAG90858.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 203/217 (93%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGN+KWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKKA   K+   EG+   AA EE KKSNHVVRKLEKRQ+ RTLD HIEEQFG+GRL
Sbjct: 121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRL 180

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125547847|gb|EAY93669.1| hypothetical protein OsI_15456 [Oryza sativa Indica Group]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 203/217 (93%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGN+KWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKKA   K+   EG+   AA EE KKSNHVVRKLEKRQ+ RTLD HIEEQFG+GRL
Sbjct: 121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDAHIEEQFGSGRL 180

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115446173|ref|NP_001046866.1| Os02g0489400 [Oryza sativa Japonica Group] gi|109940162|sp|P49199.2|RS8_ORYSJ RecName: Full=40S ribosomal protein S8 gi|47848087|dbj|BAD21871.1| putative 40S ribosomal protein S8 [Oryza sativa Japonica Group] gi|47848093|dbj|BAD21876.1| putative 40S ribosomal protein S8 [Oryza sativa Japonica Group] gi|113536397|dbj|BAF08780.1| Os02g0489400 [Oryza sativa Japonica Group] gi|215734981|dbj|BAG95703.1| unnamed protein product [Oryza sativa Japonica Group] gi|218190769|gb|EEC73196.1| hypothetical protein OsI_07259 [Oryza sativa Indica Group] gi|222622880|gb|EEE57012.1| hypothetical protein OsJ_06781 [Oryza sativa Japonica Group]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 202/217 (93%), Gaps = 1/217 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKKA    +   EG+ A A  EE KKSNHVVRKLEKRQ+ RTLD HIEEQFG+GRL
Sbjct: 121 DIGRKKKA-PAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRL 179

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 180 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 216

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|968902|dbj|BAA07207.1| ribosomal protein S8 [Oryza sativa Japonica Group]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/217 (89%), Positives = 199/217 (91%), Gaps = 1/217 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           DIGRKKK          G+ A A  EE KKSNHVVRKLEKRQ+ RTLD HIEEQFG+GRL
Sbjct: 121 DIGRKKKEPPHPRGC-CGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRL 179

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 180 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 216

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223975619|gb|ACN31997.1| unknown [Zea mays] gi|413926195|gb|AFW66127.1| putative ribosomal protein S8e family protein [Zea mays] gi|413926199|gb|AFW66131.1| putative ribosomal protein S8e family protein isoform 1 [Zea mays] gi|413926200|gb|AFW66132.1| putative ribosomal protein S8e family protein isoform 2 [Zea mays] gi|413926207|gb|AFW66139.1| putative ribosomal protein S8e family protein isoform 1 [Zea mays] gi|413926208|gb|AFW66140.1| putative ribosomal protein S8e family protein isoform 2 [Zea mays]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/210 (90%), Positives = 197/210 (93%)

Query: 8   MHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYS 67
           MHKRRATGGK+KAWRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYS
Sbjct: 1   MHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYS 60

Query: 68  WGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKK 127
           WGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGRKKK
Sbjct: 61  WGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKK 120

Query: 128 AVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSR 187
               K+   EG+   AAAEETKKSNHV RKLEKR++ RTLDPHIEEQFG+GRLLACISSR
Sbjct: 121 TPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSR 180

Query: 188 PGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           PGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct: 181 PGQCGRADGYILEGKELEFYMKKLQRKKGK 210

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127352|ref|XP_002329256.1| predicted protein [Populus trichocarpa] gi|222870710|gb|EEF07841.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/218 (92%), Positives = 207/218 (94%), Gaps = 4/218 (1%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPA+TKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPASTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKAVTKKETTE-EGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGR 179
           DIGRKKKAV KKET E EGE   A  EETKKSNHV+RKLEKRQ+ R LDPHIEEQFG+GR
Sbjct: 121 DIGRKKKAVVKKETPEQEGE---ATTEETKKSNHVIRKLEKRQQVRKLDPHIEEQFGSGR 177

Query: 180 LLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
           LLA ISSRPGQCGRADGYILEGKELEFYMKK+QRKKGK
Sbjct: 178 LLASISSRPGQCGRADGYILEGKELEFYMKKIQRKKGK 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504168|gb|AFK40150.1| unknown [Lotus japonicus]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/207 (89%), Positives = 193/207 (93%), Gaps = 3/207 (1%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDSMHKRRATGGK+K WRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1   MGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSE VTRKTR+LDVVYNASNNELVRTQTLVK AIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           +IGRKKK   KK++TEEGE   A AE+TKKSNHV RKLE RQKDRTLD HIEEQFG GRL
Sbjct: 121 EIGRKKKTAAKKDSTEEGE---AVAEDTKKSNHVQRKLENRQKDRTLDSHIEEQFGGGRL 177

Query: 181 LACISSRPGQCGRADGYILEGKELEFY 207
           LACISSRPGQCGRADGYILEGKELEFY
Sbjct: 178 LACISSRPGQCGRADGYILEGKELEFY 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
UNIPROTKB|Q0JDZ7	221	OSJNBa0038P21.4 "40S ribosomal	1.0	0.981	0.769	4.4e-84
UNIPROTKB|P49199	220	RPS8 "40S ribosomal protein S8	0.995	0.981	0.774	1.5e-83
TAIR|locus:2149194	222	AT5G20290 "AT5G20290" [Arabido	1.0	0.977	0.694	2.7e-77
TAIR|locus:2168479	210	AT5G59240 "AT5G59240" [Arabido	0.944	0.976	0.732	1.5e-76
UNIPROTKB|A8HVQ1	208	RPS8 "40S ribosomal protein S8	0.949	0.990	0.622	2.5e-65
ZFIN|ZDB-GENE-050522-202	208	rps8b "ribosomal protein S8b"	0.958	1.0	0.539	1.8e-55
ZFIN|ZDB-GENE-030131-8626	208	rps8a "ribosomal protein S8a"	0.958	1.0	0.529	2.1e-54
UNIPROTKB|Q5E958	208	RPS8 "40S ribosomal protein S8	0.958	1.0	0.506	1.1e-53
UNIPROTKB|E2RFR0	208	RPS8 "40S ribosomal protein S8	0.958	1.0	0.506	1.1e-53
UNIPROTKB|P62241	208	RPS8 "40S ribosomal protein S8	0.958	1.0	0.506	1.1e-53

UNIPROTKB|Q0JDZ7 OSJNBa0038P21.4 "40S ribosomal protein S8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 167/217 (76%), Positives = 171/217 (78%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGN+KWRALR
Sbjct:     1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
             DIGR                          SNHVVRKLEKRQ+ RTLD HIEEQFG+GRL
Sbjct:   121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRL 180

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|P49199 RPS8 "40S ribosomal protein S8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 168/217 (77%), Positives = 171/217 (78%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct:     1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
             DIGR                          SNHVVRKLEKRQ+ RTLD HIEEQFG+GRL
Sbjct:   121 DIGRKKKAPAAKKDAEGQDAEATTEEAKK-SNHVVRKLEKRQQGRTLDAHIEEQFGSGRL 179

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK
Sbjct:   180 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 216

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

TAIR|locus:2149194 AT5G20290 "AT5G20290" [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 152/219 (69%), Positives = 167/219 (76%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct:     1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct:    61 LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXX--XXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAG 178
             ++GR                            SNH++RK+  RQ+ R+LD HIE+QF +G
Sbjct:   121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query:   179 RLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             RLLACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGK
Sbjct:   181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2168479 AT5G59240 "AT5G59240" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 159/217 (73%), Positives = 166/217 (76%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct:     1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct:    61 LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
             DIGR                          SNHV RKLE RQ+ R LD H+EEQF +GRL
Sbjct:   121 DIGRKKKGEAVTTEEVKK------------SNHVQRKLEMRQEGRALDSHLEEQFSSGRL 168

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACI+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK
Sbjct:   169 LACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

UNIPROTKB|A8HVQ1 RPS8 "40S ribosomal protein S8" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 135/217 (62%), Positives = 153/217 (70%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRDS+H                 YE+GR PANTKLS+N  VR +RVRGG+ K+RALR
Sbjct:     1 MGISRDSLHKRRATGGRKKHWRKKKKYEMGRVPANTKLSTNVAVRTVRVRGGHTKFRALR 60

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LDTGNYSWGSEAVTRK RILDVVYNASNNELVRTQTLVK+AIVQVDA PFKQWY +HY V
Sbjct:    61 LDTGNYSWGSEAVTRKVRILDVVYNASNNELVRTQTLVKNAIVQVDATPFKQWYQKHYNV 120

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
             ++G                           SNHV RK+++R + R LD H+ EQF  GRL
Sbjct:   121 ELG-----------AKNQAEIVPKPEEIKGSNHVKRKIKERLQKRKLDSHLAEQFSTGRL 169

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
              ACISSRPGQCGR DGYILEGKELEFY+KK+Q+KK K
Sbjct:   170 FACISSRPGQCGRCDGYILEGKELEFYVKKMQKKKSK 206

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-050522-202 rps8b "ribosomal protein S8b" [Danio rerio (taxid:7955)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 117/217 (53%), Positives = 143/217 (65%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRD  H                 YELGR PANTK+   + +  +RVRGGN K+RALR
Sbjct:     1 MGISRDHWHKRRKTGGKRKPYHKKRKYELGRPPANTKIGPRR-IHTVRVRGGNKKYRALR 59

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LD+GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV VD+AP++QWY  HY +
Sbjct:    60 LDSGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSAPYRQWYEAHYAI 119

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
              +GR                          S  V +K+E R+K   +   +EEQF  G+L
Sbjct:   120 PLGRKKGAKLTPEEEEILNKKR--------SKKVQKKIEGRRKKSKISSLLEEQFLQGKL 171

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACI+SRPGQCGRADGYILEGKELEFY++K++ KKGK
Sbjct:   172 LACIASRPGQCGRADGYILEGKELEFYLRKIKAKKGK 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

ZFIN|ZDB-GENE-030131-8626 rps8a "ribosomal protein S8a" [Danio rerio (taxid:7955)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 115/217 (52%), Positives = 140/217 (64%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRD+ H                 YELGR  ANTK+   + +  IRVRGGN K+RALR
Sbjct:     1 MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRR-IHTIRVRGGNKKYRALR 59

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY  HY +
Sbjct:    60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYAL 119

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
              +GR                          S  V +K   R+K   + P +EEQF  G+L
Sbjct:   120 PLGRKKGAKLTPEEEEILNKKR--------SKKVQKKFTLRRKTAKISPLLEEQFLQGKL 171

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACISSRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct:   172 LACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006414 "translational elongation" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

UNIPROTKB|Q5E958 RPS8 "40S ribosomal protein S8" [Bos taurus (taxid:9913)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 110/217 (50%), Positives = 142/217 (65%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALR
Sbjct:     1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALR 59

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY +
Sbjct:    60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
              +GR                          S  + +K ++R+K+  +   +EEQF  G+L
Sbjct:   120 PLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKL 171

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACI+SRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   172 LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

UNIPROTKB|E2RFR0 RPS8 "40S ribosomal protein S8" [Canis lupus familiaris (taxid:9615)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 110/217 (50%), Positives = 142/217 (65%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALR
Sbjct:     1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALR 59

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY +
Sbjct:    60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
              +GR                          S  + +K ++R+K+  +   +EEQF  G+L
Sbjct:   120 PLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKL 171

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACI+SRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   172 LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62241 RPS8 "40S ribosomal protein S8" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 110/217 (50%), Positives = 142/217 (65%)

Query:     1 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
             MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALR
Sbjct:     1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALR 59

Query:    61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
             LD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY +
Sbjct:    60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119

Query:   121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
              +GR                          S  + +K ++R+K+  +   +EEQF  G+L
Sbjct:   120 PLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKL 171

Query:   181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
             LACI+SRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   172 LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA;TAS

GO:0006412 "translation" evidence=IC;NAS;TAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81361	RS8_PRUAR	No assigned EC number	0.8732	0.9723	0.9547	N/A	no
Q9ZT56	RS8_GRIJA	No assigned EC number	0.6153	0.8755	0.9313	N/A	no
O76756	RS8_APIME	No assigned EC number	0.6267	0.9585	1.0	yes	no
Q4N3P0	RS8_THEPA	No assigned EC number	0.5581	0.8571	0.9893	yes	no
P25204	RS8_LEIMA	No assigned EC number	0.5384	0.9815	0.9681	yes	no
Q08069	RS8_MAIZE	No assigned EC number	0.9078	1.0	0.9819	N/A	no
P0CX40	RS8B_YEAST	No assigned EC number	0.5674	0.9216	1.0	yes	no
P48156	RS8_CAEEL	No assigned EC number	0.5668	0.9585	1.0	yes	no
Q90YR6	RS8_ICTPU	No assigned EC number	0.6175	0.9585	1.0	N/A	no
Q93VG5	RS81_ARATH	No assigned EC number	0.8238	0.9585	0.9369	no	no
P62241	RS8_HUMAN	No assigned EC number	0.5898	0.9585	1.0	yes	no
P62242	RS8_MOUSE	No assigned EC number	0.5898	0.9585	1.0	yes	no
O14049	RS8A_SCHPO	No assigned EC number	0.5674	0.9216	1.0	yes	no
Q9FIF3	RS82_ARATH	No assigned EC number	0.8413	0.9032	0.9333	yes	no
Q5E958	RS8_BOVIN	No assigned EC number	0.5898	0.9585	1.0	yes	no
Q8WQI5	RS8_SPOFR	No assigned EC number	0.6221	0.9585	1.0	N/A	no
Q9P7B2	RS8B_SCHPO	No assigned EC number	0.5767	0.9216	1.0	yes	no
Q4R6P8	RS8_MACFA	No assigned EC number	0.5898	0.9585	1.0	N/A	no
P49199	RS8_ORYSJ	No assigned EC number	0.9032	0.9953	0.9818	yes	no
P62243	RS8_RAT	No assigned EC number	0.5898	0.9585	1.0	yes	no
Q8MLY8	RS8_DROME	No assigned EC number	0.6186	0.9585	1.0	yes	no
Q54E24	RS8_DICDI	No assigned EC number	0.5917	0.9447	0.9715	yes	no
Q4UFS9	RS8_THEAN	No assigned EC number	0.5534	0.8387	0.9891	yes	no
Q7SYU0	RS8_XENLA	No assigned EC number	0.5990	0.9585	1.0	N/A	no
P0CX39	RS8A_YEAST	No assigned EC number	0.5674	0.9216	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
PTZ00148	205	PTZ00148, PTZ00148, 40S ribosomal protein S8; Prov	1e-118
cd11380	138	cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal r	2e-55
pfam01201	129	pfam01201, Ribosomal_S8e, Ribosomal protein S8e	4e-52
cd11382	122	cd11382, Ribosomal_S8e, Eukaryotic/archaeal riboso	6e-52
COG2007	127	COG2007, RPS8A, Ribosomal protein S8E [Translation	7e-35
TIGR00307	127	TIGR00307, S8e, ribosomal protein S8	2e-29
PRK04049	127	PRK04049, PRK04049, 30S ribosomal protein S8e; Val	1e-23
cd11380	138	cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal r	7e-07
cd11382	122	cd11382, Ribosomal_S8e, Eukaryotic/archaeal riboso	2e-05
pfam01201	129	pfam01201, Ribosomal_S8e, Ribosomal protein S8e	0.004

>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional

 Score =  335 bits (860), Expect = e-118
 Identities = 145/215 (67%), Positives = 171/215 (79%), Gaps = 11/215 (5%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDS HKRR TGGK    RKKRK+ELGRQPANTKL S K VR +R RGGN K+RALR
Sbjct: 1   MGISRDSRHKRRLTGGKMPIHRKKRKFELGRQPANTKLGS-KRVRPVRCRGGNFKFRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGS+ + +KTRILDVVYNASNNELVRT+TLVK+AIVQ+DAAPFKQWY +HYG+
Sbjct: 60  LDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKTLVKNAIVQIDAAPFKQWYAKHYGI 119

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
           D+G+KKK   ++E            +  KKS  +V KLE R+K+  +D  + EQF +GRL
Sbjct: 120 DLGKKKKYKKEEE----------NKKAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGRL 169

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215
           LA ISSRPGQ GRADGYILEGKELEFY+KKL++KK
Sbjct: 170 LARISSRPGQSGRADGYILEGKELEFYLKKLEKKK 204

Length = 205

>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein S8e and similar proteins

 Score =  173 bits (440), Expect = 2e-55
 Identities = 60/126 (47%), Positives = 73/126 (57%), Gaps = 2/126 (1%)

Query: 5   RDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTG 64
               HKR+ATGGK K  RKKRKYELGR+PANTKL   +  R++RVRGGN+K RALRLD  
Sbjct: 1   PQGKHKRKATGGKFKVVRKKRKYELGRKPANTKLGGERFTRKVRVRGGNIKPRALRLDKA 60

Query: 65  NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 124
           N S      T+K +IL V  N SNNE VR   + K  I++ D +P         G  +  
Sbjct: 61  NVSHPELGKTKKLKILGVKKNPSNNEYVRRGVITKGTIIETDVSPLGLVT--EEGKVVWG 118

Query: 125 KKKAVT 130
               VT
Sbjct: 119 GYAQVT 124

This family contains the eukaryotic/archaeal ribosomal protein S8, a component of the small ribosomal subunits, as well as the NSA2 gene product. Length = 138

>gnl|CDD|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e

 Score =  163 bits (416), Expect = 4e-52
 Identities = 61/109 (55%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGI++    KR+ TGG+    RKKRK+ELGR PA TKL  N+ V+++RVRGGN K RALR
Sbjct: 1   MGINQGIRSKRKRTGGRLDHHRKKRKFELGRPPAPTKLGKNR-VKQVRVRGGNRKVRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAP 109
           LD  N SW SE  TRK RIL VVYN +NNE VR   + K AI++ D + 
Sbjct: 60  LDKANVSWPSEGTTRKVRILGVVYNPANNEYVRRNIITKGAIIETDVSE 108

Length = 129

>gnl|CDD|211394 cd11382, Ribosomal_S8e, Eukaryotic/archaeal ribosomal protein S8e (RPS8)

 Score =  163 bits (415), Expect = 6e-52
 Identities = 66/102 (64%), Positives = 78/102 (76%), Gaps = 1/102 (0%)

Query: 5   RDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTG 64
           R   HKR+ TGGK++ +RKKRKYELGR PANTKL   + V+ +RVRGGN K RALRLDTG
Sbjct: 1   RQGRHKRKKTGGKRRPYRKKRKYELGRPPANTKLG-ERRVKTVRVRGGNTKVRALRLDTG 59

Query: 65  NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVD 106
           N SW SE  T+K +ILDVVYN +NNELVR  TL K AI++ D
Sbjct: 60  NVSWPSEGKTKKVKILDVVYNPANNELVRRNTLTKGAIIETD 101

The eukaryotic/archaeal ribosomal protein S8 is a component of the small (40S in eukaryotes, 30S in archaea) ribosomal subunits and interacts tightly with 18S rRNA (16S rRNA in archaea, presumably). Length = 122

>gnl|CDD|224918 COG2007, RPS8A, Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

 Score =  120 bits (302), Expect = 7e-35
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 1/107 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGI      KR+ TGGK+   RKKRK+ELGR+P  TK+   +  +++R RGGN K RALR
Sbjct: 1   MGI-WQGRSKRKPTGGKRHQARKKRKFELGREPTETKIGEKRKRKKVRTRGGNFKVRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
             T N S      T+K +I+ VV N +N E VR   + K AI++ + 
Sbjct: 60  AKTANVSDPETGKTKKAKIIGVVENPANPEYVRRNIITKGAIIETEI 106

Length = 127

>gnl|CDD|129407 TIGR00307, S8e, ribosomal protein S8

 Score =  106 bits (266), Expect = 2e-29
 Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 2/107 (1%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGI +    +R+ TGGK +  RKKRKYELGR+PA TK+   + ++++R RGGN K R LR
Sbjct: 1   MGIWQ-GRSRRKPTGGKYRQARKKRKYELGREPAETKIGERR-IKKVRTRGGNKKVRLLR 58

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
            +T N S       +K  I  VV N +NN  VR   + K AIV+ D 
Sbjct: 59  DETANVSDPETGKVKKVEIAGVVENPANNHYVRRNVITKGAIVETDI 105

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 127

>gnl|CDD|235214 PRK04049, PRK04049, 30S ribosomal protein S8e; Validated

 Score = 91.0 bits (227), Expect = 1e-23
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query: 10  KRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWG 69
            R+ TGG+K+  RKKRKYELGR+P  T +  +K  + +RVRGGN K R LR +  N +  
Sbjct: 9   LRKPTGGRKRPARKKRKYELGREPTETTVGEDK-RKIVRVRGGNRKVRLLRANYANVADP 67

Query: 70  SEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQ 104
               T+K +IL VV N +N    R   + K AI++
Sbjct: 68  KTGKTKKVKILTVVENPANPHYARRNIITKGAIIE 102

Length = 127

>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein S8e and similar proteins

 Score = 46.7 bits (112), Expect = 7e-07
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 172 EEQFGAGRLLACISSRPGQCGRADGYIL 199
           EE        A ++SRPGQ G  +  +L
Sbjct: 111 EEGKVVWGGYAQVTSRPGQDGCVNAVLL 138

This family contains the eukaryotic/archaeal ribosomal protein S8, a component of the small ribosomal subunits, as well as the NSA2 gene product. Length = 138

>gnl|CDD|211394 cd11382, Ribosomal_S8e, Eukaryotic/archaeal ribosomal protein S8e (RPS8)

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 179 RLLACISSRPGQCGRADGYIL 199
           R LA ++SRPGQ G  +G +L
Sbjct: 102 RGLARVTSRPGQDGVVNGVLL 122

The eukaryotic/archaeal ribosomal protein S8 is a component of the small (40S in eukaryotes, 30S in archaea) ribosomal subunits and interacts tightly with 18S rRNA (16S rRNA in archaea, presumably). Length = 122

>gnl|CDD|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 182 ACISSRPGQCGRADGYIL 199
           A ++SRPGQ GR +G +L
Sbjct: 112 ARVTSRPGQDGRVNGVLL 129

Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PTZ00148	205	40S ribosomal protein S8; Provisional	100.0
KOG3283	200	consensus 40S ribosomal protein S8 [Translation, r	100.0
TIGR00307	127	S8e ribosomal protein S8.e. Archaeal and eukaryoti	100.0
PRK04049	127	30S ribosomal protein S8e; Validated	100.0
PF01201	132	Ribosomal_S8e: Ribosomal protein S8e; InterPro: IP	100.0
COG2007	127	RPS8A Ribosomal protein S8E [Translation, ribosoma	100.0
PTZ00388	223	40S ribosomal protein S8-like; Provisional	99.71
KOG3163	260	consensus Uncharacterized conserved protein relate	97.32

>PTZ00148 40S ribosomal protein S8; Provisional

Probab=100.00  E-value=1.5e-103  Score=676.69  Aligned_cols=205  Identities=70%  Similarity=1.078  Sum_probs=198.0

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      |||||||+|+|++|||+++++|||||||||||||+|+||+ .++++|||||||+|+||||+|+|||+||+++++++|+|+
T Consensus         1 MGIsrd~~~kRk~TGGk~~~~RkKRK~ElGR~pa~Tklg~-~ri~~VR~RGGN~K~Ralr~~~gNv~~~se~~tkk~kIl   79 (205)
T PTZ00148          1 MGISRDSRHKRRLTGGKMPIHRKKRKFELGRQPANTKLGS-KRVRPVRCRGGNFKFRALRLDTGNFSWGSQGIAKKTRIL   79 (205)
T ss_pred             CCccccCCccccCCCCccccchhhhHhhcCCCccccccCC-eEEEEEEccCCceeeEEEeecceEEeecCCCeEEeeEEE
Confidence            9999999999999999999999999999999999999999 899999999999999999999999999999999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK  160 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~  160 (217)
                      +||||||||||||||||||||||+||||||+||||+|||+|||+++..+    +      +|++.+++++|++++++|++
T Consensus        80 ~Vv~N~sNne~vRrniitKGAII~tda~Pfrqwy~~hy~~~lg~kk~~~----~------~~~~~~~~k~s~~~~kk~~~  149 (205)
T PTZ00148         80 DVVYNASNNELVRTKTLVKNAIVQIDAAPFKQWYAKHYGIDLGKKKKYK----K------EEENKKAKKKSESLVAKLEV  149 (205)
T ss_pred             EEEecCcCHHHHhhcceeeceEEeeccchHHHHHHHhhCcccccccccc----c------chhhhhhhhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998753    1      13556789999999999999


Q ss_pred             HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhhC
Q 045444          161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKG  216 (217)
Q Consensus       161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK~  216 (217)
                      |+++++||++|+|||++||||||||||||||||||||||||+||+||+++|++||+
T Consensus       150 r~~~~~~~~~leeqf~~GrllA~IsSRPGQ~Gr~dGyILEGkEL~FY~kk~~~kK~  205 (205)
T PTZ00148        150 RKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYILEGKELEFYLKKLEKKKK  205 (205)
T ss_pred             hhhhccccHHHHHHHhhCeEEEEEeCCCCCccceeEEEEecHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999874

>KOG3283 consensus 40S ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.7e-104  Score=665.40  Aligned_cols=200  Identities=72%  Similarity=1.146  Sum_probs=195.6

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      ||||||+||||++||+++.++|||||||||||||||+||+ ++++.|||||||.||||||+|+|||+|+|||+++||+|+
T Consensus         1 MGIsrds~HKRrkTGakr~~~rKKRk~elGrqpanTKIg~-~~~~~VRvRGGN~KyrALRlD~Gnfsw~Se~~trktri~   79 (200)
T KOG3283|consen    1 MGISRDSWHKRRKTGAKRKQYRKKRKFELGRQPANTKIGP-KRITPVRVRGGNKKYRALRLDMGNFSWGSEGTTRKTRIL   79 (200)
T ss_pred             CCccccchhhhhccccccccchhhhhhhccCCcccccccc-ceeeEEEecCCchhhheeeeccCcccccccceeeeeeee
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK  160 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~  160 (217)
                      +||||||||||||||||||+|||+|||+||+||||+|||+|||+|++.                ++++++|+++++||++
T Consensus        80 dvvY~~snneLVRT~TL~k~aiV~ida~Pfrqwyeshy~~~lg~kk~~----------------~~~~k~sk~~~rk~~~  143 (200)
T KOG3283|consen   80 DVVYHPSNNELVRTNTLTKSAIVQIDAAPFRQWYESHYGLPLGRKKNK----------------ILNKKKSKHVQRKYAE  143 (200)
T ss_pred             eeEecCCccceeeecchhhceEEEeccchHHHHHHHhhccccccccCc----------------cccchhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999874                2568899999999999


Q ss_pred             HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhhCC
Q 045444          161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK  217 (217)
Q Consensus       161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK~k  217 (217)
                      |+++++||++|+|||++|+||||||||||||||||||||||+||+||++||++||+|
T Consensus       144 r~~~a~vds~l~eqF~~GrL~A~isSrpGQ~GradgyileGkEl~FYlrki~~kk~k  200 (200)
T KOG3283|consen  144 RQKNAKVDSSLEEQFAAGRLYACISSRPGQCGRADGYILEGKELEFYLRKIKAKKGK  200 (200)
T ss_pred             hhccccccHHHHHHHhcCcEEEEEeCCCCcccccceeeeccchhHHHHHHhhhhcCC
Confidence            999999999999999999999999999999999999999999999999999999975

>TIGR00307 S8e ribosomal protein S8

Probab=100.00  E-value=1.8e-56  Score=362.09  Aligned_cols=104  Identities=46%  Similarity=0.687  Sum_probs=103.0

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      ||| |||+|+|++|||+++++|||||||||||||+|+||+ ++++.|||||||+|+||||+|+|||+||++++|+|++|+
T Consensus         1 M~i-~qg~~~rk~TGGr~~~~rkKRk~ElGr~pa~T~ig~-~r~~~vR~rGGn~K~Ralr~~~~Nv~~~~~~~t~k~kIl   78 (127)
T TIGR00307         1 MGI-WQGRSRRKPTGGKYRQARKKRKYELGREPAETKIGE-RRIKKVRTRGGNKKVRLLRDETANVSDPETGKVKKVEIA   78 (127)
T ss_pred             Ccc-cccCCcccCCCCccccccccchhhcCCCccccccCc-cEEEEEEcCCCceEEEEEEeeeeEEecccCCeEEEEEEE
Confidence            999 789999999999999999999999999999999999 899999999999999999999999999999999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEeec
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQVD  106 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~id  106 (217)
                      +|+||||||||||||||||||||+||
T Consensus        79 ~Vv~NpaN~~yvR~niitKGaIIetd  104 (127)
T TIGR00307        79 GVVENPANNHYVRRNVITKGAIVETD  104 (127)
T ss_pred             EEEECCCCHHHhhcCcEecceEEEEe
Confidence            99999999999999999999999998

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.

>PRK04049 30S ribosomal protein S8e; Validated

Probab=100.00  E-value=9.6e-55  Score=351.93  Aligned_cols=104  Identities=40%  Similarity=0.595  Sum_probs=103.0

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      |+| |||+|+|++|||+++++|||||||||||||+|+||+ +++++|||||||+|+|||++++|||+||++++++|++|+
T Consensus         1 m~~-~qg~~~Rk~TGGr~~~~rkKRK~ElGr~pa~T~lg~-~~~~~vR~rGGn~K~R~lr~~~~Nv~~~~~~~tkk~kI~   78 (127)
T PRK04049          1 MMI-WQGRSLRKPTGGRKRPARKKRKYELGREPTETTVGE-DKRKIVRVRGGNRKVRLLRANYANVADPKTGKTKKVKIL   78 (127)
T ss_pred             Ccc-ccCCCcccCCCCccccccchhhhhcCCCccccccCc-eEEEEEEccCCceEEEEEEecceEEeecccCeEEEEEEE
Confidence            999 999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEeec
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQVD  106 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~id  106 (217)
                      +|+||||||||||||||||||||+||
T Consensus        79 ~Vv~N~aN~~yvRrniitKGaII~te  104 (127)
T PRK04049         79 TVVENPANPHYARRNIITKGAIIETE  104 (127)
T ss_pred             EEEECCCCHHHhhcCCEecceEEEec
Confidence            99999999999999999999999986

>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []

Probab=100.00  E-value=8.5e-55  Score=354.06  Aligned_cols=109  Identities=54%  Similarity=0.879  Sum_probs=87.3

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCC--CceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeee
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS--NKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTR   78 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~--~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~k   78 (217)
                      |||+++++|+|++|||++.++++|||||+||||++|+||+  +.+++.+|+||||.|+||||+++|||+||+++++++++
T Consensus         1 M~i~~~~~~krk~tGgr~~~~rkKRK~e~Gr~p~~t~lg~~~~~~ik~~R~rGGn~K~r~lr~~~anv~~~~~~~t~k~~   80 (132)
T PF01201_consen    1 MGINQGIRHKRKKTGGRRDPHRKKRKYELGRPPANTKLGEVLSNRIKQVRVRGGNRKIRALRLDYANVSWPSEGKTKKVK   80 (132)
T ss_dssp             --EE--CCCSEETTTEE----S---GGGEE-----BEESC-C-HEEEEEETSSS-EEEEECCESEEEEEETTTTEEEEEE
T ss_pred             CCcchhhhhhhCCCcCcCCHHHHhHHHHhcccccccEEccccceeEEEEEccCCcEeeeeeeecccEEEecccCceEEee
Confidence            9998888999999999999999999999999999999998  68999999999999999999999999999999999999


Q ss_pred             EeEEeecCCCchhhhcccceeceEEeecCCc
Q 045444           79 ILDVVYNASNNELVRTQTLVKSAIVQVDAAP  109 (217)
Q Consensus        79 I~~Vv~N~sNnelvRrn~ltKGaII~idatP  109 (217)
                      |++|+||||||+|||||||||||||+||++|
T Consensus        81 I~~V~~Npan~~~vR~~iitKGaII~~d~s~  111 (132)
T PF01201_consen   81 IISVVYNPANNEYVRRNIITKGAIIETDVSE  111 (132)
T ss_dssp             EEEECSSSSTHHHHHTTBB-TT-EEEEESHT
T ss_pred             eEEEEEcCCChhhhhcCceecceEEEEeecc
Confidence            9999999999999999999999999999983

One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.

>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.3e-50  Score=323.37  Aligned_cols=105  Identities=45%  Similarity=0.698  Sum_probs=103.2

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      ||| |||+|+|++|||+.+.+||||||||||||++|+||+..+++.||+||||+|+|||++++|||+||+++.+++++|+
T Consensus         1 M~~-~qg~~~rk~tGg~~~~~RkKrK~elGreP~~t~ige~~~~~~vr~rGgn~K~r~~~~~~aNV~~p~~g~~~k~~Ii   79 (127)
T COG2007           1 MGI-WQGRSKRKPTGGKRHQARKKRKFELGREPTETKIGEKRKRKKVRTRGGNFKVRALRAKTANVSDPETGKTKKAKII   79 (127)
T ss_pred             CCc-cccccccCCcccchhhhhhhhhhhcCCCCcccccCccceEEEEEeecCCeEEEEEEeccceecccccCcEEEEEEE
Confidence            996 9999999999999999999999999999999999997799999999999999999999999999999999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEeec
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQVD  106 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~id  106 (217)
                      +|+|||||++|||+|||||||||+||
T Consensus        80 ~V~~nPan~~y~rrniitKGaiI~t~  105 (127)
T COG2007          80 GVVENPANPEYVRRNIITKGAIIETE  105 (127)
T ss_pred             EEEcCCCChHHhhccceecceEEEEe
Confidence            99999999999999999999999987

>PTZ00388 40S ribosomal protein S8-like; Provisional

Probab=99.71  E-value=1.2e-17  Score=145.08  Aligned_cols=51  Identities=20%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             EEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecCC
Q 045444           58 ALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAA  108 (217)
Q Consensus        58 alr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idat  108 (217)
                      .||+++|||+||+.+.|.+++|++|++||+|++|+|+|+|||||||+||++
T Consensus       138 glr~~~AnVt~p~~~~t~~~kIi~V~kNPan~~Ytr~nvITKGTIIEtnvs  188 (223)
T PTZ00388        138 GLRFKKAHVTHPELKTTFYLDIIGVKKNPQSNLYTSLGVITKGTIIEVNVS  188 (223)
T ss_pred             hhhcceeEEeccccCcEEEEEEEEEeeCCCChhhhhcCceeeeeEEEeehh
Confidence            589999999999999999999999999999999999999999999999987

>KOG3163 consensus Uncharacterized conserved protein related to ribosomal protein S8E [General function prediction only]

Probab=97.32  E-value=0.00014  Score=64.74  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=51.1

Q ss_pred             EEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecCCcch
Q 045444           58 ALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFK  111 (217)
Q Consensus        58 alr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idatPfr  111 (217)
                      +||...+||+.|.-++|....|+.|..||+++-|---++||||+||++|.++.-
T Consensus       175 ~lRfkkAhVthpEL~~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseLG  228 (260)
T KOG3163|consen  175 GLRFKKAHVTHPELKVTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSELG  228 (260)
T ss_pred             hhhhhhccccChhhceEEEeeeeEeccCCCCcceeecceeecceEEEEeccccc
Confidence            578889999999999999999999999999999999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2xzm_2	208	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-55
3u5c_I	200	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-54
3zey_5	220	High-resolution Cryo-electron Microscopy Structure		1e-49
3j20_J	127	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-06
2kco_A	133	Solution Nmr Structure Of Ribosomal Protein Sso0164		2e-04

>pdb|2XZM|2 Chain 2, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 208

Iteration: 1
 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 22/222 (9%)
Query: 1   MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKT-------VRRIRVRGGN 53
           MGISRDS H                 +E GR  + TKL++  T       +R +RVRGG+
Sbjct: 1   MGISRDSKHKRRATGGRMPVHRKKRAFEKGRPISMTKLTTQSTTITEKRRIRPVRVRGGH 60
Query: 54  VKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQW 113
           +K+RALRL  GN+SWGSE +TRKT+ILDV YNA+NNELVRT+TLVK++IV++D+ PF++W
Sbjct: 61  LKFRALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREW 120
Query: 114 YLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEE 173
           Y  HYG+D+G                           S HV +++ KR K + L+ +IEE
Sbjct: 121 YKLHYGIDLG--------------LKKDRTVLGNKEKSRHVQKRV-KRTKAQALEKNIEE 165
Query: 174 QFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215
           QF + R+LACI+SRPGQ GRADGYILEGKELEFY++KLQ KK
Sbjct: 166 QFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKK 207

>pdb|3U5C|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 200

Iteration: 1
 Score =  208 bits (530), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/215 (48%), Positives = 131/215 (60%), Gaps = 15/215 (6%)
Query: 1   MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDS H                 +ELGRQPANTK+ + K +  +R RGGN K+RALR
Sbjct: 1   MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALR 59
Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           ++TGN+SW SE +++KTRI  VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+  HYG 
Sbjct: 60  IETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQ 119
Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
            +G+                          S +  RK   R     ++  +E QF AGRL
Sbjct: 120 TLGK--------------KKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRL 165
Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215
            ACISSRPGQ GR DGYILEG+EL FY+++L  KK
Sbjct: 166 YACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 200

>pdb|3ZEY|5 Chain 5, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 220

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/220 (46%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 1   MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGI R  +H                  ELGR PANTKL   + V  +R RGGN K R LR
Sbjct: 1   MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTKLGPRR-VSPVRARGGNFKLRGLR 59
Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN++WG+EA  ++ RILDVVYNA++NELVRT+TLVK+ IV VDAAPF+ WY +HYG+
Sbjct: 60  LDTGNFAWGTEASAQRARILDVVYNATSNELVRTKTLVKNCIVVVDAAPFRLWYAKHYGI 119
Query: 121 DIG-----RXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQF 175
           D+G     +                          S+ + RK E R+K   ++  + +Q 
Sbjct: 120 DLGASKSKKATQKSTEKKSKKSAHAAVEKYDVKKASSKLKRKWEYRRKHHKIEKALADQL 179
Query: 176 GAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215
             GRLLA I+SRPGQ GRADG +LEG EL+FY+KKL +KK
Sbjct: 180 REGRLLARITSRPGQTGRADGALLEGAELQFYLKKLDKKK 219

>pdb|3J20|J Chain J, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 127

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 28  ELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYS--WGSEAVTRKTRILDVVYN 85
           ELGR+P+NT+++     + IR  GGN   R +RL    Y+  +      RK RI+ V+ N
Sbjct: 27  ELGREPSNTRVAEQDKRKIIRTYGGN---RKVRLTAAAYANVFDKSGKGRKVRIIRVIEN 83
Query: 86  ASNNELVRTQTLVKSAIVQVD 106
            +N +  R   + K AI++ +
Sbjct: 84  PANRQFARRNIITKGAIIETE 104

>pdb|2KCO|A Chain A, Solution Nmr Structure Of Ribosomal Protein Sso0164 From Sulfolobus Solfataricus. Northeast Structural Genomics Consortium (Nesg) Target Sst4 Length = 133

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 27  YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNA 86
           YE+G  P  T LS+     + R  GGN K R     T N    +    +K +IL+++   
Sbjct: 26  YEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETP 85
Query: 87  SNNELVRTQTLVKSAIVQVDAA 108
           +N EL R   +++ A ++ +A 
Sbjct: 86  ANKELARRGIIIRGAKIRTEAG 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	5e-79
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	8e-79
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	1e-40
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	9e-26

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2 Length = 208

 Score =  234 bits (598), Expect = 5e-79
 Identities = 124/222 (55%), Positives = 159/222 (71%), Gaps = 22/222 (9%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKT-------VRRIRVRGGN 53
           MGISRDS HKRRATGG+    RKKR +E GR  + TKL++  T       +R +RVRGG+
Sbjct: 1   MGISRDSKHKRRATGGRMPVHRKKRAFEKGRPISMTKLTTQSTTITEKRRIRPVRVRGGH 60

Query: 54  VKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQW 113
           +K+RALRL  GN+SWGSE +TRKT+ILDV YNA+NNELVRT+TLVK++IV++D+ PF++W
Sbjct: 61  LKFRALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREW 120

Query: 114 YLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEE 173
           Y  HYG+D+G KK                      K+ +  V+K  KR K + L+ +IEE
Sbjct: 121 YKLHYGIDLGLKKD---------------RTVLGNKEKSRHVQKRVKRTKAQALEKNIEE 165

Query: 174 QFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215
           QF + R+LACI+SRPGQ GRADGYILEGKELEFY++KLQ KK
Sbjct: 166 QFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKK 207

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I Length = 200

 Score =  233 bits (596), Expect = 8e-79
 Identities = 118/215 (54%), Positives = 148/215 (68%), Gaps = 15/215 (6%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MGISRDS HKR ATG K+  +RKKRK+ELGRQPANTK+ + + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKR-IHSVRTRGGNKKYRALR 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           ++TGN+SW SE +++KTRI  VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+  HYG 
Sbjct: 60  IETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQ 119

Query: 121 DIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRL 180
            +G+KK                   E   KS +  RK   R     ++  +E QF AGRL
Sbjct: 120 TLGKKKN--------------VKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRL 165

Query: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215
            ACISSRPGQ GR DGYILEG+EL FY+++L  KK
Sbjct: 166 YACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 200

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2} Length = 133

 Score =  134 bits (339), Expect = 1e-40
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
           MG  +     R+ TGG K   R KRKYE+G  P  T LS+     + R  GGN K R   
Sbjct: 1   MGFYQG-PDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKY 59

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFK 111
             T N    +    +K +IL+++   +N EL R   +++ A ++ +A    
Sbjct: 60  TTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTEAGLAV 110

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A Length = 98

 Score = 95.3 bits (237), Expect = 9e-26
 Identities = 20/70 (28%), Positives = 29/70 (41%)

Query: 42  KTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSA 101
           + VR IR RGGN K R       N             I +VV N +N   VR   + + A
Sbjct: 3   RRVRLIRTRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGA 62

Query: 102 IVQVDAAPFK 111
           +V+ +    +
Sbjct: 63  VVETNLGNVR 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	100.0
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	100.0
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	100.0
3j20_J	127	30S ribosomal protein S8E; archaea, archaeal, KINK	100.0
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	100.0

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I

Probab=100.00  E-value=1.9e-106  Score=691.96  Aligned_cols=200  Identities=60%  Similarity=1.003  Sum_probs=186.7

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      |||||||+|+|++|||+++++|||||||||||||+|+||+ .++++|||||||+|+||||+|+|||+||++++++||+|+
T Consensus         1 Mgisrdg~~kRk~TGGkr~~~rKKRK~ElGR~pa~TkiG~-~ri~~vR~RGGN~K~Ralr~d~~N~s~~se~~tkK~kI~   79 (200)
T 3u5c_I            1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIA   79 (200)
T ss_dssp             -CEECCSSSSCBTTTBCCCCCSCCCGGGEECCCCCBCBSS-CCEEEEECSSSCEEEEESSBCEEEEEEGGGTEEEEEECC
T ss_pred             CCccccCCcCcCCCCCccccchhhhHHhcCCCCcccccCC-cEEEEEeccCCceeeeeEeeceeEEEeCCCCeEEEEeEE
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK  160 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~  160 (217)
                      +||||||||||||||||||||||+||||||+||||+|||+|||+|+..+              +++++++|+++++||++
T Consensus        80 ~Vv~N~sNne~vRrn~LtKGaII~tDatPfrqwy~~hy~~~lg~kk~~~--------------~~~~~k~s~~~~~k~~~  145 (200)
T 3u5c_I           80 GVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVK--------------EEETVAKSKNAERKWAA  145 (200)
T ss_dssp             EEEECSSCHHHHHTTCBCTTCEEECCCHHHHHHHHHHSSCCSCCC-------------------------CSHHHHHHHH
T ss_pred             EEEEcCCChHhhhccceecceEEEccCchhhHHHHhhhCcccccccccc--------------hhhhhhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998753              12347899999999999


Q ss_pred             HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhh
Q 045444          161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK  215 (217)
Q Consensus       161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK  215 (217)
                      |+++++||++|+|||++||||||||||||||||||||||||+|||||++||++||
T Consensus       146 r~~~~~i~~~leeqf~~GrllA~isSRPGQ~GradGyiLEGkELeFy~kk~~~kk  200 (200)
T 3u5c_I          146 RAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK  200 (200)
T ss_dssp             SCSSCCCCHHHHHHHHTTCCEEEECSCHHHHSCCCEEECCHHHHHHHHHHHHTTC
T ss_pred             HHhhCCcCHHHHHHHhhCcEEEEEecCCCCccccceeEEccHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999886

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2

Probab=100.00  E-value=3.4e-104  Score=679.78  Aligned_cols=200  Identities=62%  Similarity=1.025  Sum_probs=193.0

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCcccc--------CCCceEEEeeeeCCceeeeEEeeceeeeeeCCcc
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKL--------SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA   72 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~Tki--------G~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~   72 (217)
                      ||||+|++|+|++|||+++++|||||||||||||+|+|        |+ .++++|||||||+|+||||+|+|||+||+++
T Consensus         1 MGIsm~~~hkRk~TGGk~~~~RKKRK~ElGR~pa~Tkl~~~~~~~~G~-~ri~~VRvRGGN~K~Ralrl~~gNfsw~se~   79 (208)
T 2xzm_2            1 MGISRDSKHKRRATGGRMPVHRKKRAFEKGRPISMTKLTTQSTTITEK-RRIRPVRVRGGHLKFRALRLCEGNFSWGSEN   79 (208)
T ss_dssp             -CCCCCGGGSEETTTEECCCCSCCCGGGCCCCCCCCEECTTCSSCCSC-CEEEEEECSSSCEEEEEEEESEEEEEETTTT
T ss_pred             CcccccCCcCcCCCCCccccccchhHhhcCCCccccEEecccccCCCC-cEEEEEeccCCceeeeeeecceeEEEecCCC
Confidence            99999999999999999999999999999999999999        97 9999999999999999999999999999999


Q ss_pred             eEEeeeEeEEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcch
Q 045444           73 VTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSN  152 (217)
Q Consensus        73 ~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~  152 (217)
                      +++||+|++||||||||||||||||||||||+||||||+||||+|||+|||+|+.+              ++++++++|+
T Consensus        80 ~trK~kIl~VvyN~sNnelvRtntLtKgAIV~tDa~Pfrqwye~hy~~~lg~kk~~--------------~~~~~~k~s~  145 (208)
T 2xzm_2           80 ITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREWYKLHYGIDLGLKKDR--------------TVLGNKEKSR  145 (208)
T ss_dssp             EEEEEEEEEECCCSSCSHHHHTTCCCTTCEEEEESHHHHHHHHHHHSBCCSSGGGC--------------BCCCSCCSST
T ss_pred             eEEEEEEEEEEecCcchHHHhhcccccccEEEccCchhHHHHHHhcCccccccccc--------------ccccchhhhH
Confidence            99999999999999999999999999999999999999999999999999999864              1345678999


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhhC
Q 045444          153 HVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKG  216 (217)
Q Consensus       153 ~~~kk~~~r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK~  216 (217)
                      ++++|| +|++++++||+|+|||++||||||||||||||||||||||||+|||||++||++||.
T Consensus       146 ~~~kk~-~r~~~~~~~~~l~eqf~~GrllA~isSRPGQ~GradGyiLEGkELeFY~~k~~~kk~  208 (208)
T 2xzm_2          146 HVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKKK  208 (208)
T ss_dssp             THHHHH-HHTTTCCCCHHHHHHHHHSEEEEEECSCHHHHSCCEEEECCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHH-HHhhhccccHHHHHHHhhCcEEEEEecCCCCcccccEEEEechhHHHHHHHHHhccC
Confidence            999999 999999999999999999999999999999999999999999999999999999874

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}

Probab=100.00  E-value=4.9e-63  Score=401.59  Aligned_cols=132  Identities=33%  Similarity=0.511  Sum_probs=128.1

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      ||| |||+|+|++|||+++++|||||||||||||+|+||++.++++|||||||+|+||||+++|||+||+++++++++|+
T Consensus         1 M~i-~~g~~krk~TGgk~~~~rkKRk~ElGr~pa~Tkig~~~~~~~vR~rGGN~K~r~lr~~~~nv~~~~~~~t~k~~I~   79 (133)
T 2kco_A            1 MGF-YQGPDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAKKVKIL   79 (133)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSHHHHHHHHHTCCCCCCCCCCCCCEEEEEETTTTEEEEEEEE
T ss_pred             CCc-ccCCCcccCCCCccccccchhhhhcCCCCcccEecCceEEEEEeccCCceeeeEeeeeeEEEEecccCeEEEEEEE
Confidence            999 9999999999999999999999999999999999943999999999999999999999999999999999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK  160 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~  160 (217)
                      +|+||||||||||||||||||||+||               ||                                     
T Consensus        80 ~Vv~Npsn~~yvR~n~itKGaII~~~---------------lG-------------------------------------  107 (133)
T 2kco_A           80 EILETPANKELARRGIIIRGAKIRTE---------------AG-------------------------------------  107 (133)
T ss_dssp             EECSCCTTHHHHTTTCCCTTCEEEES---------------SS-------------------------------------
T ss_pred             EEEECCCChhheecccEeeeeEEEEe---------------Cc-------------------------------------
Confidence            99999999999999999999999999               11                                     


Q ss_pred             HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchh
Q 045444          161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELE  205 (217)
Q Consensus       161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELe  205 (217)
                                          ||||+|||||||+||||||||+||+
T Consensus       108 --------------------~A~VtSRPGQdG~vnavlleg~el~  132 (133)
T 2kco_A          108 --------------------LAVVTSRPGQDGVINAVLLKNESQR  132 (133)
T ss_dssp             --------------------EEEEEEEECTTSBEEEEECSSCCCC
T ss_pred             --------------------eEEEecCCCCcceEEEEEEeccccc
Confidence                                8999999999999999999999997

>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=9e-54  Score=345.23  Aligned_cols=103  Identities=34%  Similarity=0.484  Sum_probs=101.5

Q ss_pred             CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444            1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL   80 (217)
Q Consensus         1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~   80 (217)
                      ||| |||+|+|++|||+++++|||||||||||||+|+||++.++++|||||||+|+||||+|+|||+| +++++++++|+
T Consensus         1 Mgi-~qg~~krk~TGGk~~~~rkKRK~ElGr~pa~T~ig~~~r~~~vR~rGGN~K~ralr~~~aNvs~-s~~~t~k~~Ii   78 (127)
T 3j20_J            1 MAI-WQGRSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANVFD-KSGKGRKVRII   78 (127)
T ss_dssp             CBC-CCSSSSBCTTSCBCCCCSCCCGGGCBCCCCCCEECSSCEEEEEECTTSCEEEEEEEESBCCCCC-SSCCCCCCBBC
T ss_pred             Ccc-ccCCCcccCCCCcccccccchhhhcCCCccccEeCCceEEEEEEccCCceEEEEEEeccceEEe-ecCCEEEEEEE
Confidence            999 6999999999999999999999999999999999998899999999999999999999999999 99999999999


Q ss_pred             EEeecCCCchhhhcccceeceEEee
Q 045444           81 DVVYNASNNELVRTQTLVKSAIVQV  105 (217)
Q Consensus        81 ~Vv~N~sNnelvRrn~ltKGaII~i  105 (217)
                      +|+||||||||||||||||||||+|
T Consensus        79 ~Vv~NpsN~~yvR~n~itKGaIIet  103 (127)
T 3j20_J           79 RVIENPANRQFARRNIITKGAIIET  103 (127)
T ss_dssp             CCCCCSSCSHHHHHTCCCSSCEEEB
T ss_pred             EEEECCCChhheEeccEecceEEEE
Confidence            9999999999999999999999994

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A

Probab=100.00  E-value=9.1e-45  Score=281.52  Aligned_cols=93  Identities=31%  Similarity=0.422  Sum_probs=89.2

Q ss_pred             CCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecCCcchHHHhhhh
Q 045444           39 SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHY  118 (217)
Q Consensus        39 G~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy  118 (217)
                      |+ ++++.||+||||+|+||||+++|||+||+++++++++|++|+||||||+|||||||||||||+||            
T Consensus         1 g~-~r~~~vR~rGGN~K~Ralr~~~aNv~~~~~~~t~k~~Ii~Vv~NpsN~~yvR~n~ltKGaII~~d------------   67 (98)
T 2kcp_A            1 GD-RRVRLIRTRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETN------------   67 (98)
T ss_dssp             CC-CCCCCCCCCCCCCCCCTTSCCCEEEECTTTCCEEEECEEESSCSCSSCTTCCSSCCCTTCEEEES------------
T ss_pred             CC-cEEEEEEccCCceEEEEEEeeeEEEEecccCeEEEEEEEEEEECCCChHHeecccEEeeeEEEec------------
Confidence            55 88999999999999999999999999999999999999999999999999999999999999998            


Q ss_pred             cccccccccccccccccccccchhHHHHhhhcchHHHHHHHHHhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceee
Q 045444          119 GVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYI  198 (217)
Q Consensus       119 ~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyi  198 (217)
                                                                                .|+  |||+|||||||+|||||
T Consensus        68 ----------------------------------------------------------~Gk--A~VTSRPGQdG~vnavl   87 (98)
T 2kcp_A           68 ----------------------------------------------------------LGN--VRVTSRPGQDGVINGVL   87 (98)
T ss_dssp             ----------------------------------------------------------SSE--EEECSCTTGGGSCEEEE
T ss_pred             ----------------------------------------------------------CcE--EEEecCCCCccEEEEEE
Confidence                                                                      466  89999999999999999


Q ss_pred             ecCcch
Q 045444          199 LEGKEL  204 (217)
Q Consensus       199 LEGkEL  204 (217)
                      |||+|-
T Consensus        88 L~g~e~   93 (98)
T 2kcp_A           88 IRELEH   93 (98)
T ss_dssp             ECCSCC
T ss_pred             Eecccc
Confidence            999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00