Citrus Sinensis ID: 045448
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1756 | ||||||
| 255552085 | 1786 | protein binding protein, putative [Ricin | 0.993 | 0.976 | 0.610 | 0.0 | |
| 359477550 | 1822 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.958 | 0.594 | 0.0 | |
| 224107969 | 1877 | predicted protein [Populus trichocarpa] | 0.981 | 0.917 | 0.604 | 0.0 | |
| 225432752 | 1808 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.958 | 0.587 | 0.0 | |
| 147766921 | 1817 | hypothetical protein VITISV_020207 [Viti | 0.975 | 0.942 | 0.570 | 0.0 | |
| 356575875 | 1811 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.958 | 0.528 | 0.0 | |
| 356535987 | 1804 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.957 | 0.521 | 0.0 | |
| 449433299 | 1824 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.945 | 0.499 | 0.0 | |
| 359479667 | 1823 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.955 | 0.488 | 0.0 | |
| 147802454 | 1837 | hypothetical protein VITISV_039693 [Viti | 0.991 | 0.947 | 0.478 | 0.0 |
| >gi|255552085|ref|XP_002517087.1| protein binding protein, putative [Ricinus communis] gi|223543722|gb|EEF45250.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1986 bits (5146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1097/1798 (61%), Positives = 1370/1798 (76%), Gaps = 54/1798 (3%)
Query: 1 MDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDNATGELRQ 60
MDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD+ATGELRQ
Sbjct: 1 MDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGELRQ 60
Query: 61 AHRTMSEAFPNQVPYVIRDDSTLGSSGPEGEPHTPEMLHPIRALVDPDDLQKDALGFSST 120
AHRTM+EAFPNQVPYV+ DDS SG EGEPHTPEM HPIRAL+DPDDL KD+LG SS
Sbjct: 61 AHRTMAEAFPNQVPYVLADDSP---SGLEGEPHTPEMPHPIRALLDPDDLHKDSLGLSSV 117
Query: 121 NLHALKRNGMYSEESDSGISKRGLKQLNEMFGSGEMVPQNSKLAEGRIRKGMTVHEA--- 177
N +A+K NG Y E SDS ISKRGLKQLNEMFGSG V SK +EG +++ EA
Sbjct: 118 NPYAMKGNGGYLEGSDSKISKRGLKQLNEMFGSGGAV---SKSSEGNLKRSPNFPEAVEC 174
Query: 178 --EDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERAS 235
E +A+ E++ LKKTL EI+AEKEA+L+QYQ++L+K +S+ER+L K+A GLDERAS
Sbjct: 175 ENEKQAEIEVQNLKKTLVEIKAEKEALLLQYQKTLEKLASMERDL----KEAEGLDERAS 230
Query: 236 KADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEI 295
+A+IEVK+LK+ LI+LEAERD GLLQY CLERIS+LE M+ AQED+KGL+ERA AE+
Sbjct: 231 RAEIEVKILKDTLIKLEAERDIGLLQYTKCLERISSLENMLSLAQEDAKGLSERAIGAEV 290
Query: 296 EAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKA 355
EAQ LKQE+S LE EK+AGLLQY QCLEMI LE+KIS+AE +A MLNEQT++AE E++A
Sbjct: 291 EAQSLKQEISALETEKKAGLLQYNQCLEMISILENKISVAETDARMLNEQTQRAEFEIEA 350
Query: 356 LKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQ 415
LK+ L L EEK A RYDQCL++IA+ME EIF+AQE K+LNSEIL GA KL++ E+Q
Sbjct: 351 LKKDLARLKEEKAAAELRYDQCLERIAKMECEIFHAQEDVKRLNSEILTGAAKLKSVEEQ 410
Query: 416 CVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTL 475
LLE +N +LQ+EA++L QKIA KDQ+LS+K+ ELE LQ+SLQ+EQSRF QVE LQ L
Sbjct: 411 YFLLENSNQTLQLEADNLTQKIATKDQQLSEKENELEKLQSSLQNEQSRFLQVEAALQAL 470
Query: 476 QKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITI 535
QKLHSQSQ EQKAL +ELQ +LQ +KD+E+CN+DL+E +++VK +N SL ELN+SS +I
Sbjct: 471 QKLHSQSQEEQKALAIELQKRLQMLKDLEICNNDLQEDLQRVKEDNWSLSELNNSSRNSI 530
Query: 536 QNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVG 595
NLQNEI++LKEMK+KLEK+++LQ +SN+LQ E+ HLKEEI GL+RRYQALV+QV SVG
Sbjct: 531 MNLQNEIYSLKEMKDKLEKDLSLQLAQSNSLQQEIYHLKEEIEGLNRRYQALVQQVCSVG 590
Query: 596 LNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNI 655
L+PE L S++++LQ+EN KLKE+ + EKE L++KL++M LL+KN ALE SLSE++I
Sbjct: 591 LDPECLNSSIRDLQDENLKLKEISTKDRSEKEDLYDKLRDMSKLLEKNLALERSLSELHI 650
Query: 656 KLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAG 715
KL+GS ERV +LQ+SCQFL+ EKS +V EK LLSQLQIMTENMQKLLEK+ LE SL+
Sbjct: 651 KLDGSRERVKELQESCQFLQGEKSGIVDEKTILLSQLQIMTENMQKLLEKDALLESSLSH 710
Query: 716 ANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEK 775
AN+ELEGLR KSK LE+ C+MLKNEKSNL NERSTLV+QLE+VE+RLGNLE RFT+LEE+
Sbjct: 711 ANIELEGLREKSKGLEELCQMLKNEKSNLQNERSTLVTQLENVEQRLGNLELRFTRLEER 770
Query: 776 YADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKE 835
Y D++ EK+ L +V+EL+ L E+ ER Y+QSSESR+ DLE+ VH L+EE+ L KKE
Sbjct: 771 YNDLDEEKKMMLCEVKELQSYLGLEKKERVCYMQSSESRLADLENQVHLLKEESKLIKKE 830
Query: 836 FEEELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQ 895
FEEELDKA AQVEIFILQKFI+DLEEKNLSLLIEC+KHVEASK+S+KLI ELE+ENLEQ
Sbjct: 831 FEEELDKAANAQVEIFILQKFIQDLEEKNLSLLIECKKHVEASKMSNKLITELETENLEQ 890
Query: 896 QVETEFLLDELEKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLR 955
QVE EFLLDE+EKLR G++QV R +QFD N HE IE+G IP I+++IEDLK SVL+
Sbjct: 891 QVEVEFLLDEIEKLRMGVHQVLRAIQFDMDNEHEDDIEEGQIPFLHILDNIEDLKGSVLK 950
Query: 956 NEDEKQQLVIENTVLLTLIGQLRLDGAEQESGKKIFEQELMSRTEQHMMLQKDKDELLEM 1015
NE+E QQLV+EN VLLTL+G+LR +GAE ES KK+ QE TEQ +L+K K EL EM
Sbjct: 951 NEEENQQLVVENLVLLTLLGELRSEGAELESEKKVLNQEFEMLTEQCSLLEKGKHELGEM 1010
Query: 1016 NKQLMLE--------------------------EAYLTLQEENSKLLEEDRLLYERFLGL 1049
N+QL LE +YLTLQEEN K L E+R L ++F L
Sbjct: 1011 NRQLRLELSEGEQQEQVLKAKLETQHVNLAKLQGSYLTLQEENIKALGENRSLLKKFSDL 1070
Query: 1050 KKEISALEEENIVLLQEALDLGNVSTVFKSFGIEKAEEVKALFEDLNHLHMTNGELQGKV 1109
K+E+ LEEEN V+LQE L L +VSTVFKSFG +K EE++AL EDL+ + N +L+ KV
Sbjct: 1071 KEEMLILEEENSVILQEVLSLHSVSTVFKSFGTKKVEELEALCEDLSCFRVANSDLKKKV 1130
Query: 1110 ELLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQLNIQIFIGHDSLRQKASDLLEAE 1169
++L +KLE KE E LHLNET++KL +EL E +DL+DQLN QI IG + +RQKA++LLE E
Sbjct: 1131 KMLEQKLEAKETESLHLNETIEKLHQELQEGNDLSDQLNYQILIGQEFVRQKAAELLEVE 1190
Query: 1170 QKLKATHNLNVELCITVEDLKRECDELKLIKENAEKRILEISRDCSKQERELECLQEVNK 1229
QKLKA+HNLN EL +E LK+ECDE +L +EN EK ILE+S D Q++E+ECL+E N+
Sbjct: 1191 QKLKASHNLNAELYRIIEGLKKECDEARLARENIEKHILELSTDSISQKKEIECLKEANE 1250
Query: 1230 SLEAEVGILHDEIEEHRIREVYLSSELQERSNEFELWESEATSFYFDLQMSSTREVLLEN 1289
+LE+EVGIL EIEE R RE LS ELQERSNEF+LWE+EA+SFYFDLQ+SS REVLLEN
Sbjct: 1251 NLESEVGILCKEIEEQRTREENLSLELQERSNEFQLWEAEASSFYFDLQISSVREVLLEN 1310
Query: 1290 KVHELAEVCESLEDGSATKSLESKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDNITS 1349
KV+EL VC+SL D +ATK +QMKER G LE+EIG+LK +LS+Y PVIASL+DNI S
Sbjct: 1311 KVNELTAVCKSLGDENATKDSTIEQMKERFGFLETEIGQLKVQLSAYAPVIASLRDNIES 1370
Query: 1350 LELNILHQKKHVLTGNGEQKNSEMPSQLHLMNSQEPEVKSIAVADGISELQEMQTRIKAV 1409
LE N L + Q + Q N+QE + + + DG+S+L ++Q R+KAV
Sbjct: 1371 LECNALLCTRSFSAEIQGQMGVKTAVQSQDRNNQEL-MHNETMPDGVSDLLKIQNRVKAV 1429
Query: 1410 EKAFVEEIERLVVQESMKNSIKVEDQISETEDSKLRSTSCQGEANQKEEIELQGKLTDN- 1468
E V E++RLV+QE + +K E + E +L S + + +KEE EL TDN
Sbjct: 1430 ENVMVTEMDRLVMQERLNTDVKREPPVKGAE-LELICRSNREKDFRKEEEELDDDPTDNS 1488
Query: 1469 ----SKPENSEVSSRTLMKDIPLDQVSDYSFYGKRRGENTGSNDQMLGLWECAEQDCGPD 1524
SK S+V + MKDIPLDQVSD S YG+ + EN +++QML LWE AE + D
Sbjct: 1489 KSYISKARISDVKNGIWMKDIPLDQVSDCSLYGRSKRENAETDNQMLELWESAEHEGSFD 1548
Query: 1525 PMVHDQQKRAAAPAANTSVRSQSKAVESKNPFSELEIEKELGVDKLEVSSS-NADTNKEG 1583
P+ QK+AAA AN + R + +S+NP EL++E+E+G+DKLEVS+S + N +G
Sbjct: 1549 PVAGVTQKQAAAQLANVNARFKGSNHKSRNPSLELQVEREVGIDKLEVSTSIKKEPNLKG 1608
Query: 1584 SKRKILERLASDAQKLTSLQTTVQDLKNKMEMNKSKKAANDPEYEQVKRQLKEVEETVVE 1643
S+ KILERLAS+AQKLTSLQTTV DLK KMEM K K AN E+E+VKRQL+EVEE V +
Sbjct: 1609 SRGKILERLASNAQKLTSLQTTVADLKKKMEMKKRSKKANGLEFERVKRQLQEVEEAVEQ 1668
Query: 1644 LVGINDQLTKDTEQIP-SFDGKSAAELEDAG---RKKVAEQAQEGSEKIGRLQLAVQSIR 1699
LV NDQLTK+ E+ P S + ++ +D G R ++ EQA++GSEKIGRLQ +QSI+
Sbjct: 1669 LVDANDQLTKEMEESPSSLEENTSIASQDTGNVVRNRLTEQARKGSEKIGRLQFELQSIQ 1728
Query: 1700 YILLKLEDESKTEGKQKFSGSRTGALLRDFIYSGGRSSTGR-RKGCLCGCMRPSTNGD 1756
Y+LLK+EDE K + K +F GSRTG +LRDFIYSG R S R +KGC CGC RPS + D
Sbjct: 1729 YMLLKMEDERKNKSKHRFPGSRTGIILRDFIYSGSRKSPRRWKKGCFCGCARPSNHDD 1786
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477550|ref|XP_003631994.1| PREDICTED: uncharacterized protein LOC100254535 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224107969|ref|XP_002314672.1| predicted protein [Populus trichocarpa] gi|222863712|gb|EEF00843.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225432752|ref|XP_002283122.1| PREDICTED: uncharacterized protein LOC100254535 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147766921|emb|CAN67523.1| hypothetical protein VITISV_020207 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356575875|ref|XP_003556062.1| PREDICTED: uncharacterized protein LOC100812191 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356535987|ref|XP_003536522.1| PREDICTED: uncharacterized protein LOC100819263 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449433299|ref|XP_004134435.1| PREDICTED: uncharacterized protein LOC101218746 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359479667|ref|XP_003632326.1| PREDICTED: uncharacterized protein LOC100852899 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147802454|emb|CAN70401.1| hypothetical protein VITISV_039693 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1756 | ||||||
| TAIR|locus:2130210 | 1710 | NET1B "Networked 1B" [Arabidop | 0.839 | 0.862 | 0.388 | 1.3e-240 | |
| TAIR|locus:2007569 | 1733 | NET1D "AT1G03080" [Arabidopsis | 0.926 | 0.938 | 0.346 | 5.3e-230 | |
| TAIR|locus:2132348 | 1111 | NET1C "AT4G02710" [Arabidopsis | 0.547 | 0.864 | 0.326 | 1.9e-116 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.929 | 0.761 | 0.209 | 2.2e-38 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.930 | 0.76 | 0.209 | 7.6e-38 | |
| UNIPROTKB|E1BRE5 | 1411 | EEA1 "Uncharacterized protein" | 0.611 | 0.760 | 0.214 | 2.2e-37 | |
| DICTYBASE|DDB_G0290503 | 1492 | DDB_G0290503 [Dictyostelium di | 0.695 | 0.818 | 0.214 | 2.7e-35 | |
| UNIPROTKB|I3LRD3 | 2501 | CENPE "Uncharacterized protein | 0.802 | 0.563 | 0.208 | 5.6e-35 | |
| UNIPROTKB|Q9BV73 | 2442 | CEP250 "Centrosome-associated | 0.809 | 0.581 | 0.199 | 3e-34 | |
| UNIPROTKB|E2R498 | 1874 | CCDC88A "Uncharacterized prote | 0.608 | 0.569 | 0.229 | 1.8e-33 |
| TAIR|locus:2130210 NET1B "Networked 1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2319 (821.4 bits), Expect = 1.3e-240, P = 1.3e-240
Identities = 601/1547 (38%), Positives = 898/1547 (58%)
Query: 180 KADSELETXXXXXXXXXXXXXXXXMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADI 239
+ADSE+ET +QYQ L K S E+ELN AQKD G DERA KADI
Sbjct: 156 EADSEVETLKRTLLELQTEKEALNLQYQLILSKVSRFEKELNDAQKDVKGFDERACKADI 215
Query: 240 EVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQK 299
E+K+LKE+L +LE ERD GLLQY+ +ERI+ LE I QE +KGL R S+AE EA
Sbjct: 216 EIKILKESLAKLEVERDTGLLQYSQAIERIADLEASISHGQEYAKGLTNRVSEAEREAMS 275
Query: 300 LKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQA 359
LK+ELSRL++EKEAGLL+Y + LE+I +LE I AEE+ + +Q+E+AETE+KALKQ
Sbjct: 276 LKKELSRLQSEKEAGLLRYNKSLELISSLEKTIRDAEESVRVFRDQSEQAETEIKALKQE 335
Query: 360 LTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLL 419
L LNE E + RY QCL+ I+++E E+ +AQ++AK+L+SE+L GA K++T E+QC LL
Sbjct: 336 LLKLNEVNEDLNVRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKIKTVEEQCALL 395
Query: 420 ERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLH 479
E N +++VEAE+L K++ KDQELSQKQ E+E LQA +Q+EQ RF+++ +L+ L+ LH
Sbjct: 396 ESFNQTMKVEAENLAHKMSAKDQELSQKQNEIEKLQAVMQEEQLRFSELGASLRNLESLH 455
Query: 480 SQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQ 539
SQSQ EQK LT EL +++Q ++++E+ N LE I K EN++L E+N +S I+++ +
Sbjct: 456 SQSQEEQKVLTSELHSRIQMLRELEMRNSKLEGDISS-KEENRNLSEINDTS-ISLEIQK 513
Query: 540 NEIFNXXXXXXXXXXXIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPE 599
NEI +A Q ++S+ALQ+E+ +K I ++RRYQ L++QV G +PE
Sbjct: 514 NEISCLKKMKEKLEEEVAKQMNQSSALQVEIHCVKGNIDSMNRRYQKLIDQVSLTGFDPE 573
Query: 600 HLGSAVKELQEENSKLKEVCKEQGDEKEVLHEXXXXXXXXXXXXXXXEGSLSEMNIKLEG 659
L +VK+LQ+ENSKL E+C Q DE + E L E N KL+G
Sbjct: 574 SLSYSVKKLQDENSKLVELCTNQRDENNAVTGKLCEMDSILKRNADLEKLLLESNTKLDG 633
Query: 660 SGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVE 719
S E+ DL + C+ LR EKS L AE+A L+SQLQIMT NMQ LLEKN LE SL+ AN+E
Sbjct: 634 SREKAKDLIERCESLRGEKSELAAERANLVSQLQIMTANMQTLLEKNSVLEKSLSCANIE 693
Query: 720 LEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADI 779
LE LR KSK +DF + LKN+KS L+ ER +LVSQL VE++LG LE+++T+LE +Y D+
Sbjct: 694 LESLRDKSKCFDDFFQFLKNDKSELMKERESLVSQLCKVEEKLGVLEKKYTELEVRYTDL 753
Query: 780 EREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEE 839
+R+ + QVEEL+ SL E+ E ANY +S+ESR+ DL+ V L+EE RK+E+E+E
Sbjct: 754 QRDNKLKSHQVEELQVSLAAEKQESANYKRSTESRLADLQKNVSFLREECRSRKREYEDE 813
Query: 840 LDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVET 899
LD+ V QVEIFILQK I+DLE+KN SLLIECQKHVEAS+ S+KLIAELESENLEQQ+E
Sbjct: 814 LDRVVNKQVEIFILQKLIEDLEQKNFSLLIECQKHVEASEFSEKLIAELESENLEQQMEA 873
Query: 900 EFLLDELEKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDE 959
E LDE++ LR IYQV + LQ + E KI + I + + + +I+ LK S+ E E
Sbjct: 874 EIFLDEIDSLRGAIYQVIKALQVEADCKTEQKITKDQISVSRALGEIDSLKGSLSSAEYE 933
Query: 960 KQQLVIENTVLLTLIGQLRLDGAEQESGKKIFEQELMSRTEQHMMLQKDKDELLEMNKQL 1019
+LV+EN+VLL+L+GQ + DG ES K I E++L ++ Q ML+KDK +L E N+
Sbjct: 934 MHRLVVENSVLLSLLGQFQSDGLVLESEKNILEKDLKTKIHQCGMLEKDKQDLQEANR-- 991
Query: 1020 MLEEAYLTLQEENSKLLEEDRLLYERFLGLKKEISALEEENIVLLQEALDLGNVSTVFKS 1079
+L+ + +++ KL E + +F L L+++ L + L + FK
Sbjct: 992 LLKSKLIKREQQEQKLRAELKFENLKFESLHDSYMVLQQDYSYTLNDNKTLLLKFSEFKD 1051
Query: 1080 FGIEKAEEVK-ALFEDLNHLHMT-------NGELQGKVE-LLGRKLEMKE-AEGLHLN-E 1128
G+ EE A+ ++ L T E+ +VE + ++E + GL E
Sbjct: 1052 -GMHVVEEENDAILQEAVALSNTCVVYRSFGSEMAEEVEDFVETVSSLREISTGLKRKVE 1110
Query: 1129 TVDK-LQKELHEVSDLNDQL-NIQIFIGHDSLRQKASDLLEAEQKL--KATHNLNVELCI 1184
T++K L+ + E LN L N+Q + D+ + LLE + + + +E+
Sbjct: 1111 TLEKKLEGKEKESQGLNKMLENLQEGLEEDNF---LTGLLEHQVSNVDEILEHREMEILE 1167
Query: 1185 TVEDLK---RECDELKLIKENAEKRILEISRDCSKQERELECLQEVNKSLEAEVGILHDE 1241
LK E +EL E K + R + E ++ L +V E E+ L+
Sbjct: 1168 AEHMLKATNNENEELHKEVEELRKDYEDSRRMRANLEWQISELSDVAGRQEEEIRKLN-A 1226
Query: 1242 IEEHRIREV-YLSSELQERS--NEFELWESEATSFYFDLQMSSTREVLLENKVHELAEVC 1298
+ E+ EV +L+ E+Q + E+ E + S L S+ + +V + E+
Sbjct: 1227 LNENLESEVQFLNKEIQRQQVREEYLSLELQEKSNEIGLWDSAATSFYFDLQVSAIRELI 1286
Query: 1299 ESLEDGSATKSLESKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDNITSLELNILHQK 1358
LE+ S + + + + + ++I ++K + + + LK +++ + I
Sbjct: 1287 --LENKVNELSGVCENLNDEVVTKTTKIKQMKETVGFLESQVTELKSQLSAYDPVIASLA 1344
Query: 1359 KHVLT-GNGEQKNSEMPS---QLHLMNSQEPEVKSIAVADGISELQEMQTRIKAVEKAFV 1414
V ++ P+ Q + N+ E + + +GI L+E+ IK +E+AFV
Sbjct: 1345 GDVKALEKSTHALTKFPATAYQQRVGNNLEESGSTTSPCNGIVILKEINPSIKTIEQAFV 1404
Query: 1415 EEIERLVVQESMKNSIKVEDQISETEDSKLRSTSCQGEANQKEEIELQGKLTDNSKPENS 1474
+E RL Q + S K D+ + E+ + GE+ Q +L +PE +
Sbjct: 1405 KEKGRLSRQITRSTSQKRRDR-RKIENIQ-PDDQVTGESRQP-------RL----RPEMT 1451
Query: 1475 EVSSRTLMKDIPLDQVSDYSFYGKRRGENTGSNDQMLGLW-ECAEQDCGPDPMVHDQQKR 1533
EV + LMKD P DQV+D YG+ +G + GSND M W E AE + + +++ + +
Sbjct: 1452 EVKNELLMKDNPRDQVTDSLTYGRSQGTSHGSND-MFEFWDESAESETSVNFLINSNKPQ 1510
Query: 1534 AAAPAANTSVRSQSKAVESKNPFSELEIEKELGV-DKLEVSSSNADTNKEGSKRKILERL 1592
+ N+++R QS+ NP +E +K +GV DKLE+S + D K KILERL
Sbjct: 1511 RSL---NSNLRHQSR-----NP--SIESDKAVGVVDKLELSRNIED------KAKILERL 1554
Query: 1593 ASDAQKLTSLQTTVQDLKNKMEMNKSKKAANDPEYEQVKRQLKXXXXXXXXXXGINDQLT 1652
SD+++L+SL+ ++ DLK K+EMN+ ++ ++ + VKRQLK N+ L+
Sbjct: 1555 LSDSRRLSSLRISLTDLKRKLEMNEKQRRFSNADLVIVKRQLKEMEEAVSQLENTNEILS 1614
Query: 1653 KDTEQI-PSFD--GKSAAELEDAGRKKVAEQAQEGSEKIGRLQLAVQ 1696
K+ E+ + D K E +G +K+ EQ Q + I + L ++
Sbjct: 1615 KEIEETGDARDIYRKVVVEKSRSGSEKI-EQLQNKMQNIEQTVLKLE 1660
|
|
| TAIR|locus:2007569 NET1D "AT1G03080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2132348 NET1C "AT4G02710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BRE5 EEA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LRD3 CENPE "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9BV73 CEP250 "Centrosome-associated protein CEP250" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R498 CCDC88A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1756 | |||
| pfam07765 | 74 | pfam07765, KIP1, KIP1-like protein | 9e-27 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-13 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-13 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-12 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-09 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 9e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-08 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 4e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 6e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-06 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 9e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 6e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 8e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 8e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 3e-04 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 6e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-04 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 9e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.002 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.002 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.002 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 0.003 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 0.004 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 0.004 | |
| PRK11281 | 1113 | PRK11281, PRK11281, hypothetical protein; Provisio | 0.004 |
| >gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-27
Identities = 46/52 (88%), Positives = 50/52 (96%)
Query: 1 MDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 52
MD+KVK M+KLIEEDADSFA+RAEMYYKKRPEL+ LVEEFYRAYRALAERYD
Sbjct: 23 MDSKVKEMLKLIEEDADSFAKRAEMYYKKRPELIALVEEFYRAYRALAERYD 74
|
This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerise in vivo. Length = 74 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1756 | |||
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.95 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.92 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.92 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.9 | |
| PF07765 | 74 | KIP1: KIP1-like protein; InterPro: IPR011684 This | 99.89 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.77 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.76 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.76 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.74 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.74 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.72 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.6 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.58 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.58 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.55 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.54 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.51 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.46 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.39 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.27 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.24 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.19 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.14 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 99.06 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.94 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.94 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.9 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 98.86 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.84 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.82 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.75 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.74 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.7 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.7 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.65 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.62 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 98.59 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.59 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 98.58 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 98.54 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.53 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.5 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.5 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 98.44 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.4 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.31 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.29 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.27 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.24 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.16 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 98.14 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.14 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 98.09 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.07 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 97.97 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.94 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.92 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 97.91 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 97.9 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.89 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.87 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 97.84 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.83 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.83 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.82 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.79 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.74 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.73 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.71 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.7 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.69 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.66 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.65 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 97.65 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.64 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.64 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.54 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.49 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 97.48 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 97.46 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.46 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 97.35 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 97.31 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.3 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 97.29 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.25 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.19 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 97.18 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 97.17 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.15 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.13 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 97.12 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 97.11 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 97.08 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.04 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.03 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.01 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 96.89 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 96.89 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 96.72 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 96.67 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.62 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.61 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 96.51 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 96.5 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.49 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 96.49 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 96.48 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 96.45 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 96.41 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 96.41 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 96.41 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.38 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 96.38 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.26 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 96.19 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 96.19 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 96.12 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.0 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.0 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 95.91 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 95.8 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 95.76 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 95.71 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 95.69 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 95.56 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.54 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.42 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 95.39 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 95.31 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.26 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 95.24 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 95.08 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 95.03 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 95.02 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 94.98 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 94.95 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 94.89 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 94.83 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 94.81 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 94.77 | |
| PRK09039 | 343 | hypothetical protein; Validated | 94.64 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 94.55 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 94.47 | |
| KOG2991 | 330 | consensus Splicing regulator [RNA processing and m | 94.47 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 94.46 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 94.14 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 94.13 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 94.11 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 93.81 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 93.74 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 93.57 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 93.43 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 92.82 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 92.74 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 92.56 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 92.34 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 92.3 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 92.22 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 92.18 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 92.14 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 92.09 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 92.08 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 92.06 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 91.64 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 91.55 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 91.5 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 91.22 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 91.12 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 91.04 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 91.01 | |
| KOG0979 | 1072 | consensus Structural maintenance of chromosome pro | 90.99 | |
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 90.31 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 89.91 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 89.85 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 89.73 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 89.67 | |
| KOG4360 | 596 | consensus Uncharacterized coiled coil protein [Fun | 89.54 | |
| PF13514 | 1111 | AAA_27: AAA domain | 89.34 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 89.31 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 88.89 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 88.82 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 88.79 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 88.31 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 88.05 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 87.65 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 87.37 | |
| PF10212 | 518 | TTKRSYEDQ: Predicted coiled-coil domain-containing | 87.04 | |
| PF14073 | 178 | Cep57_CLD: Centrosome localisation domain of Cep57 | 86.98 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 86.35 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 86.14 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 85.85 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 85.68 | |
| PF13166 | 712 | AAA_13: AAA domain | 85.67 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 85.65 | |
| PRK10361 | 475 | DNA recombination protein RmuC; Provisional | 85.65 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 85.26 | |
| PF06785 | 401 | UPF0242: Uncharacterised protein family (UPF0242); | 85.06 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 84.7 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 84.13 | |
| KOG4360 | 596 | consensus Uncharacterized coiled coil protein [Fun | 83.99 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 83.83 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 83.71 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 83.66 | |
| PF12795 | 240 | MscS_porin: Mechanosensitive ion channel porin dom | 83.63 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 83.45 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 83.01 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 82.95 | |
| PF09738 | 302 | DUF2051: Double stranded RNA binding protein (DUF2 | 82.77 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 82.21 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 82.15 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 81.89 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 81.87 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 81.52 | |
| PF13166 | 712 | AAA_13: AAA domain | 80.79 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 80.73 | |
| PF12777 | 344 | MT: Microtubule-binding stalk of dynein motor; Int | 80.63 |
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-15 Score=200.66 Aligned_cols=880 Identities=20% Similarity=0.204 Sum_probs=465.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH---HHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 045448 425 SLQVEAESLVQKIAIKDQELSQKQRELEN-LQ-ASLQDE---QSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQK 499 (1756)
Q Consensus 425 ~Lq~Ele~l~eKIs~lerEL~eKqeE~e~-Lq-s~IqdE---~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~ 499 (1756)
.+....+.+..+++.++.+|..+...... +. +.|... ++++......|-=+-+-+..+|.++..+-+++.+....
T Consensus 334 sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~ 413 (1822)
T KOG4674|consen 334 SLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNI 413 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555444443332 11 122211 34555555555556666666666666666666665555
Q ss_pred hhh-------hhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 045448 500 MKD-------MEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRH 572 (1756)
Q Consensus 500 L~~-------lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~ 572 (1756)
|.. ...-...-...+..+..++..++.-...+---|..++.+|..++.....++.|+.+--....+|++++.+
T Consensus 414 l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~ 493 (1822)
T KOG4674|consen 414 LSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNV 493 (1822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 3333334455666777777777777777888999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhCCCccc--------hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------HHh
Q 045448 573 LKEEIMGLSRRYQALVEQVLSVGLNPEH--------LGSAVKELQEENSKLKEVCKEQGDEKEVLHEK---------LKN 635 (1756)
Q Consensus 573 ~KeE~~~Ln~~~~~l~E~~~s~~l~~~s--------~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ek---------l~~ 635 (1756)
+-.++..++..+-...+.....+.+... -=+.|..||.-|..|-..+..+.+..++--.. ...
T Consensus 494 Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~ 573 (1822)
T KOG4674|consen 494 LLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKET 573 (1822)
T ss_pred HHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998887655555554322221110 11346889999999988887777666662111 112
Q ss_pred HhHHHHHHHHHHHhHhh-------hcccccchh-----------------------------hhHHHHHHHhhHHHHHHh
Q 045448 636 MDNLLKKNAALEGSLSE-------MNIKLEGSG-----------------------------ERVNDLQKSCQFLREEKS 679 (1756)
Q Consensus 636 ~e~L~~k~~~le~sls~-------~~~ele~lr-----------------------------~~vk~Lqe~~~~Lke~~s 679 (1756)
++.++++...|+..+.. +-.+.|-++ ..+++|++.-...+
T Consensus 574 ~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~---- 649 (1822)
T KOG4674|consen 574 INEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYK---- 649 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHH----
Confidence 22223333222222222 222222222 23333333333222
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhH----
Q 045448 680 SLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQL---- 755 (1756)
Q Consensus 680 ~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL---- 755 (1756)
.|+.+-... ..+.+++|-.....+-..|-+...++.=-+.+++.|++....++.+...|..=...|-+.+
T Consensus 650 ---~E~~~~~~~---l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 650 ---KEKRENLKK---LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred ---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111 1122333333333333333333333333456667777777777777776662222222222
Q ss_pred H---HHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH
Q 045448 756 E---DVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLR 832 (1756)
Q Consensus 756 ~---~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~ 832 (1756)
+ .+...|-.-..++..|+...+.+..|+..+..- ...|..+++.+....++....+.+++-....+++-....
T Consensus 724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t----~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~ 799 (1822)
T KOG4674|consen 724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKET----EERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMAT 799 (1822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222333344444445555555555555444332 344555556666666666666666666666665555555
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 045448 833 KKEFEE-------ELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVETEFLLDE 905 (1756)
Q Consensus 833 ~~e~e~-------e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e~~~l~~~ 905 (1756)
+..+++ ++.++-.- |+.|..|+.+.+..+-....-+..-..-....+..+=..+...+.....|..+
T Consensus 800 k~~~e~~i~eL~~el~~lk~k------lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k 873 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKK------LQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIK 873 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443 33332221 78888888887777776666666655555566666667777777777777777
Q ss_pred HHHHHHHHHHH-HHHhccCCCCCCccccccCccchhhhHhhHHHhhhhhhchhhhHHHHHHHHHHHHHHHHHhhhhchhh
Q 045448 906 LEKLRTGIYQV-FRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDEKQQLVIENTVLLTLIGQLRLDGAEQ 984 (1756)
Q Consensus 906 ~~~lr~gi~qv-~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~q~~~~E~svl~t~L~q~~~e~~~l 984 (1756)
+.-|-.+|..+ .+.++.+++--..|....+. .|...+.++.+++..+-.+.-...+.--..++.-+-|.+........
T Consensus 874 ~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~-~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~ 952 (1822)
T KOG4674|consen 874 LSELEKRLKSAKTQLLNLDSKSSNEDATILED-TLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDET 952 (1822)
T ss_pred HHHHHHHHHHhHHHHhhccccchhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777763 44455554422333222222 48888899988888887777766666666666666666555554444
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHhHHHhh---------HHHHHHHHHHhhHHH-------------------
Q 045448 985 ESGKKIFEQELMSRTEQHMMLQKDKDELLEMNKQLML---------EEAYLTLQEENSKLL------------------- 1036 (1756)
Q Consensus 985 ~~ek~~l~~e~~~~~~q~~~Lq~~~~~lle~n~ql~~---------~~s~~~lq~e~~~~~------------------- 1036 (1756)
+ ..++..++........|..+.-.|..-+..|+. +...-.+..++..+.
T Consensus 953 ~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~ 1029 (1822)
T KOG4674|consen 953 R---LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIED 1029 (1822)
T ss_pred H---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 223333333333333333333333332222221 111122222222222
Q ss_pred ----------------HhhHHHHHHHhhhHHHHhhhhhhhHHHHHHHHhhccchhhhchhhhhhHHHHHHHHHhhhhhhh
Q 045448 1037 ----------------EEDRLLYERFLGLKKEISALEEENIVLLQEALDLGNVSTVFKSFGIEKAEEVKALFEDLNHLHM 1100 (1756)
Q Consensus 1037 ----------------~e~~sL~~~~~~l~e~~~~leden~~~l~E~~~~~~ls~~~~~~~~e~~~~l~~l~~~~~~l~~ 1100 (1756)
..|.+=.-...++..++..|..+|..+-.+...|.-- ....--.+.+.......
T Consensus 1030 ~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~----------~~~~~~~l~e~~~~w~E 1099 (1822)
T KOG4674|consen 1030 LQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKS----------RESRHALLSEQERDWSE 1099 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHhHHhhcccchHH
Confidence 2222223333444445555555555555544433211 11111223333445556
Q ss_pred cchhhhHHHHHHhhhhhhHhHhhhhhhHhHHHHHHHHHhhhchhhhhh-hHHhhhchhhhhhhhhHHHH-----HHHHHH
Q 045448 1101 TNGELQGKVELLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQLN-IQIFIGHDSLRQKASDLLEA-----EQKLKA 1174 (1756)
Q Consensus 1101 ~~~~L~~~v~~l~~kl~~~e~e~~~l~~~~~~~~~eL~~~~s~~~~l~-~q~~~~~~~l~~k~~~lle~-----~~~~~~ 1174 (1756)
....|.++|....++..+++..|.-|..-|+.+-.-.....--.+... .++.+.-.+| ++++++++. ..-...
T Consensus 1100 ~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~L-R~Ekei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1100 KEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFL-RKEKEIAETKLDTLKRENAR 1178 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HhHHHHHhhhHHHHHHHHHH
Confidence 667789999999999999999999998888776654332111111111 1122211122 223333221 222344
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHH----------HHHhHHHHHHh---hhhhhhhHHHHhHHHhhHHHHHHHHHhHHH
Q 045448 1175 THNLNVELCITVEDLKRECDELKLIK----------ENAEKRILEIS---RDCSKQERELECLQEVNKSLEAEVGILHDE 1241 (1756)
Q Consensus 1175 ~~~~~~el~~~v~~l~~~~~e~~~~~----------~~~e~~i~~ls---~~~~~q~~ei~~l~e~n~~L~~e~~~l~~e 1241 (1756)
+....+.+|++|.+|+......++-- .++=+++.++. +.++.=+.+.....+-++.|+..+..|..+
T Consensus 1179 L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~e 1258 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFE 1258 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777888888888887776655433 12222232222 444444555555555555555556666666
Q ss_pred HHHHHhhhhhhchHHHhhhhhhhhhHHHHHH----------hhhhhhHhHHHHHHHHhHHHHHHHHhhhhcccccchhhh
Q 045448 1242 IEEHRIREVYLSSELQERSNEFELWESEATS----------FYFDLQMSSTREVLLENKVHELAEVCESLEDGSATKSLE 1311 (1756)
Q Consensus 1242 ~~~~~~re~~l~~el~~~~~e~~~~e~e~~~----------~~~dlq~ssv~~~l~e~kv~El~~~c~~le~~~~~k~~~ 1311 (1756)
+..++..=..|.++++...++++..+.+.-. =|-|..... ...|...|.+|+.+-..+...
T Consensus 1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~---------~~kL~~ei~~Lk~el~~ke~~ 1329 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKND---------YEKLKSEISRLKEELEEKENL 1329 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444443321 122222222 234455666666666555555
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccchhHHHhhhhhHHHHH
Q 045448 1312 SKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDNITSLE 1351 (1756)
Q Consensus 1312 i~~lkerv~~lE~En~~Lk~~Lsay~p~i~sL~~~v~sLE 1351 (1756)
|..++.+++-+. .-.|-+|.+..--++.|.+.|..|+
T Consensus 1330 ~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1330 IAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554 3344555555555555555555553
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >KOG2991 consensus Splicing regulator [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
| >PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif | Back alignment and domain information |
|---|
| >PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
| >PRK10361 DNA recombination protein RmuC; Provisional | Back alignment and domain information |
|---|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
| >PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF12795 MscS_porin: Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 9e-22
Identities = 99/696 (14%), Positives = 217/696 (31%), Gaps = 214/696 (30%)
Query: 752 VSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQS- 810
++D+ K + +K E+ I K V ++ VQ
Sbjct: 35 CKDVQDMPKSI------LSK--EEIDHIIMSK----DAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 811 -SESRMVDLESLVHQLQEET---TLRKKEFEEELDKA-------VKAQV----EIFILQK 855
E ++ + L+ ++ E ++ + + E+ D+ K V L++
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 856 FIKDLE-EKNLSL--LIECQKHVEASK--LSDKLIAELESE----NLEQQVETEFLLDEL 906
+ +L KN+ + ++ K A LS K+ +++ + NL+ E +L+ L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 907 EKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDEKQQLVIE 966
+KL + Q DP NW I + I+ +L+++ + L++
Sbjct: 203 QKL---------LYQIDP-NWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV- 249
Query: 967 NTVLLTLIGQLRLDGAEQESGKKIFEQELMSRTEQHMMLQKDK---DELLEMN-KQLMLE 1022
L + F L + ++ + K D L + L+
Sbjct: 250 ------------LLNVQNAKAWNAFN--LSCKI---LLTTRFKQVTDFLSAATTTHISLD 292
Query: 1023 EAYLTLQEENSKLLEEDRLLYERFLGLKKE----------------ISALEEENIVLLQ- 1065
+TL + L ++L + + I+ + +
Sbjct: 293 HHSMTLTPDEV--KS----LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 1066 -EALDLGNVSTVFKSFGIE--KAEEVKALFEDL----NHLHMTNGELQGKVELLGRKLEM 1118
+ ++ ++T+ +S + + E + +F+ L H+ L L+ ++
Sbjct: 347 WKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILL----SLIW--FDV 399
Query: 1119 KEAEGLHLNETVDKLQKELHEVSDLN-DQLNIQIFIGHDSLRQKASDLLEAEQKLKATHN 1177
+ V + +LH+ S + I I +
Sbjct: 400 IK-------SDVMVVVNKLHKYSLVEKQPKESTISI----------------------PS 430
Query: 1178 LNVELCITVEDLKRECDELKLIKENAEKRILEISRDCSKQERELECLQEVNKSLEAEVGI 1237
+ +EL + +E+ L + I++ + +
Sbjct: 431 IYLELKVKLENEY----AL-------HRSIVD-------HYNIPKTFDSDDLIPPYLDQY 472
Query: 1238 LHDEIEEHRIREVYLSS-ELQERSNEFELWESEATSFYFDLQMSSTREVLLENKVHELAE 1296
+ I H L + E ER F + + D + LE K+
Sbjct: 473 FYSHIGHH------LKNIEHPERMTLFRMV-------FLDFR-------FLEQKIRH--- 509
Query: 1297 VCESLEDGSATKSLESKQMKERIGSLESEIGRL---KSRLSSYDP----VIASLKDNITS 1349
D +A + GS+ + + +L K + DP ++ ++ D +
Sbjct: 510 ------DSTAWNA---------SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 1350 LELNILHQKKHVLTGNGEQKNSEMPSQLHLMNSQEP 1385
+E N++ K L ++ LM E
Sbjct: 555 IEENLICSKYTDLL------------RIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1756 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 99.18 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 99.17 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.8 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.73 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.96 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.78 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.72 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.72 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 96.55 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 96.22 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 96.21 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.13 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 95.96 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.22 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.24 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 93.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 93.5 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 93.01 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 90.99 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 90.4 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 89.89 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 89.89 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 89.58 | |
| 2b9c_A | 147 | Striated-muscle alpha tropomyosin; alpha-helix, co | 86.83 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 86.46 | |
| 2b9c_A | 147 | Striated-muscle alpha tropomyosin; alpha-helix, co | 84.76 | |
| 4gkw_A | 167 | Spindle assembly abnormal protein 6; double helix, | 83.15 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 82.0 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 80.47 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7.3e-07 Score=96.22 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHH
Q 045448 187 TLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDE 232 (1756)
Q Consensus 187 eLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~e 232 (1756)
.+++++..+..+++.+...+.....++..++..+..+...+..+..
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 48 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQK 48 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333333
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00