Citrus Sinensis ID: 045606
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 107 | ||||||
| 255538872 | 849 | hypothetical protein RCOM_1596950 [Ricin | 0.757 | 0.095 | 0.688 | 5e-25 | |
| 359492201 | 115 | PREDICTED: protein IQ-DOMAIN 32-like [Vi | 0.579 | 0.539 | 0.887 | 7e-24 | |
| 224065982 | 814 | predicted protein [Populus trichocarpa] | 0.607 | 0.079 | 0.833 | 3e-23 | |
| 449477051 | 790 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.579 | 0.078 | 0.806 | 3e-21 | |
| 449460269 | 789 | PREDICTED: protein IQ-DOMAIN 32-like [Cu | 0.579 | 0.078 | 0.806 | 3e-21 | |
| 224082964 | 819 | predicted protein [Populus trichocarpa] | 0.607 | 0.079 | 0.805 | 5e-21 | |
| 356509638 | 904 | PREDICTED: protein IQ-DOMAIN 32-like [Gl | 0.588 | 0.069 | 0.746 | 5e-18 | |
| 356518122 | 388 | PREDICTED: protein IQ-DOMAIN 32-like [Gl | 0.579 | 0.159 | 0.758 | 6e-18 | |
| 357438241 | 784 | IQ domain-containing protein [Medicago t | 0.598 | 0.081 | 0.703 | 7e-18 | |
| 388510968 | 273 | unknown [Lotus japonicus] | 0.588 | 0.230 | 0.682 | 1e-16 |
| >gi|255538872|ref|XP_002510501.1| hypothetical protein RCOM_1596950 [Ricinus communis] gi|223551202|gb|EEF52688.1| hypothetical protein RCOM_1596950 [Ricinus communis] | Back alignment and taxonomy information |
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Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 70/90 (77%), Gaps = 9/90 (10%)
Query: 1 MQATESARAKIQANNSPRSSPDVQDRDTYIKKRHSLPVANGRHGSPRIQRSLSQAQQGAK 60
MQATESARAKIQAN+SPRSSPDVQDRD YIKKRHSLP ANGR GSPRIQRS+SQAQQG K
Sbjct: 738 MQATESARAKIQANSSPRSSPDVQDRD-YIKKRHSLPGANGRQGSPRIQRSMSQAQQGTK 796
Query: 61 GNGTLHVTCPNTDLGTVGLLDVTVHIFKPQ 90
GNG+ T+ L+ V +F+P+
Sbjct: 797 GNGSQD--------ETLLLVPYFVDVFRPK 818
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492201|ref|XP_003634378.1| PREDICTED: protein IQ-DOMAIN 32-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224065982|ref|XP_002301992.1| predicted protein [Populus trichocarpa] gi|222843718|gb|EEE81265.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449477051|ref|XP_004154914.1| PREDICTED: LOW QUALITY PROTEIN: protein IQ-DOMAIN 32-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449460269|ref|XP_004147868.1| PREDICTED: protein IQ-DOMAIN 32-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224082964|ref|XP_002306910.1| predicted protein [Populus trichocarpa] gi|222856359|gb|EEE93906.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356509638|ref|XP_003523553.1| PREDICTED: protein IQ-DOMAIN 32-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356518122|ref|XP_003527731.1| PREDICTED: protein IQ-DOMAIN 32-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357438241|ref|XP_003589396.1| IQ domain-containing protein [Medicago truncatula] gi|355478444|gb|AES59647.1| IQ domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388510968|gb|AFK43550.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 107 | ||||||
| TAIR|locus:2035428 | 794 | iqd32 "AT1G19870" [Arabidopsis | 0.560 | 0.075 | 0.693 | 2.2e-15 |
| TAIR|locus:2035428 iqd32 "AT1G19870" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 205 (77.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 43/62 (69%), Positives = 50/62 (80%)
Query: 1 MQATESARAKIQANNSPRSSPDVQDRDTY-IKKRHSLP-VANGRHGSPRIQRSLSQAQQG 58
MQ T+SA+AK+Q +NSPRSSPD+Q+RD KKRHSLP V NG+ SPRIQRS SQAQQG
Sbjct: 727 MQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSASQAQQG 786
Query: 59 AK 60
K
Sbjct: 787 TK 788
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 107 107 0.00091 102 3 11 22 0.43 30
29 0.40 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 531 (57 KB)
Total size of DFA: 106 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.13u 0.09s 12.22t Elapsed: 00:00:00
Total cpu time: 12.13u 0.09s 12.22t Elapsed: 00:00:00
Start: Thu May 9 20:33:04 2013 End: Thu May 9 20:33:04 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00014465001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (414 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 107 | |||
| pfam13178 | 105 | pfam13178, DUF4005, Protein of unknown function (D | 3e-08 |
| >gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005) | Back alignment and domain information |
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Score = 47.2 bits (112), Expect = 3e-08
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 1 MQATESARAKIQANNSPRSSPDVQDRDTY--IKKRHSLPVAN---GRHGSPRIQRSLSQA 55
M ATESA+AK+++ ++PR P+ ++R++ KR SLPV++ G S A
Sbjct: 41 MAATESAKAKVRSQSAPRQRPETEERESGSSATKRLSLPVSSSSGGSSSSSPRTSGGKGA 100
Query: 56 QQ 57
+
Sbjct: 101 LR 102
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This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 107 | |||
| PF13178 | 102 | DUF4005: Protein of unknown function (DUF4005) | 99.48 |
| >PF13178 DUF4005: Protein of unknown function (DUF4005) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-14 Score=99.53 Aligned_cols=44 Identities=43% Similarity=0.587 Sum_probs=36.9
Q ss_pred CccchhhhhhhhccCCCCCCCCccccc--ccccceeccccC-CCCCC
Q 045606 1 MQATESARAKIQANNSPRSSPDVQDRD--TYIKKRHSLPVA-NGRHG 44 (107)
Q Consensus 1 MAATESAKAKlRsqsSPR~rpd~~ek~--~~~kkR~SLPss-NGk~~ 44 (107)
||+|||||||+|+|++||++++..|.. ...+||||||.+ ++...
T Consensus 38 Ma~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~ 84 (102)
T PF13178_consen 38 MAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSS 84 (102)
T ss_pred cchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcC
Confidence 999999999999999999999987543 267899999976 44443
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00