Citrus Sinensis ID: 045606


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
MQATESARAKIQANNSPRSSPDVQDRDTYIKKRHSLPVANGRHGSPRIQRSLSQAQQGAKGNGTLHVTCPNTDLGTVGLLDVTVHIFKPQFFETLMVLIVDICRELE
ccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHcc
ccccHHHHHHHHccccccccccccccccccEEccccccccccccccccccccHHHHccccccccccccccccccccEcEEEEEEEEEcHHHHHHHHHHHHHHHHHHc
MQATESARAKIqannsprsspdvqdrdtyikkrhslpvangrhgspriQRSLSQAqqgakgngtlhvtcpntdlgtvgllDVTVHIFKPQFFETLMVLIVDICRELE
MQATESARakiqannsprsspdvqdrDTYIKKrhslpvangrhgspRIQRSLSQAQQGAKGNGTLHVTCPNTDLGTVGLLDVTVHIFKPQFFETLMVLIVDICRELE
MQATESARAKIQANNSPRSSPDVQDRDTYIKKRHSLPVANGRHGSPRIQRSLSQAQQGAKGNGTLHVTCPNTDLGTVGLLDVTVHIFKPQFFETLMVLIVDICRELE
***************************************************************TLHVTCPNTDLGTVGLLDVTVHIFKPQFFETLMVLIVDICR***
*****************************************************************************GLLDVTVHIFKPQFFETLMVLIVDICREL*
*************************RDTYIKKRHSLPVANGRHGSPRIQ************NGTLHVTCPNTDLGTVGLLDVTVHIFKPQFFETLMVLIVDICRELE
****************************Y*KK*****************************************LGTVGLLDVTVHIFKPQFFETLMVLIVDICRELE
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQATESARAKIQANNSPRSSPDVQDRDTYIKKRHSLPVANGRHGSPRIQRSLSQAQQGAKGNGTLHVTCPNTDLGTVGLLDVTVHIFKPQFFETLMVLIVDICRELE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query107 2.2.26 [Sep-21-2011]
Q9FXI5794 Protein IQ-DOMAIN 32 OS=A yes no 0.560 0.075 0.693 5e-16
>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3 Back     alignment and function desciption
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 50/62 (80%), Gaps = 2/62 (3%)

Query: 1   MQATESARAKIQANNSPRSSPDVQDRDTY-IKKRHSLP-VANGRHGSPRIQRSLSQAQQG 58
           MQ T+SA+AK+Q +NSPRSSPD+Q+RD    KKRHSLP V NG+  SPRIQRS SQAQQG
Sbjct: 727 MQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSASQAQQG 786

Query: 59  AK 60
            K
Sbjct: 787 TK 788





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
255538872 849 hypothetical protein RCOM_1596950 [Ricin 0.757 0.095 0.688 5e-25
359492201115 PREDICTED: protein IQ-DOMAIN 32-like [Vi 0.579 0.539 0.887 7e-24
224065982 814 predicted protein [Populus trichocarpa] 0.607 0.079 0.833 3e-23
449477051 790 PREDICTED: LOW QUALITY PROTEIN: protein 0.579 0.078 0.806 3e-21
449460269 789 PREDICTED: protein IQ-DOMAIN 32-like [Cu 0.579 0.078 0.806 3e-21
224082964 819 predicted protein [Populus trichocarpa] 0.607 0.079 0.805 5e-21
356509638 904 PREDICTED: protein IQ-DOMAIN 32-like [Gl 0.588 0.069 0.746 5e-18
356518122 388 PREDICTED: protein IQ-DOMAIN 32-like [Gl 0.579 0.159 0.758 6e-18
357438241 784 IQ domain-containing protein [Medicago t 0.598 0.081 0.703 7e-18
388510968 273 unknown [Lotus japonicus] 0.588 0.230 0.682 1e-16
>gi|255538872|ref|XP_002510501.1| hypothetical protein RCOM_1596950 [Ricinus communis] gi|223551202|gb|EEF52688.1| hypothetical protein RCOM_1596950 [Ricinus communis] Back     alignment and taxonomy information
 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 70/90 (77%), Gaps = 9/90 (10%)

Query: 1   MQATESARAKIQANNSPRSSPDVQDRDTYIKKRHSLPVANGRHGSPRIQRSLSQAQQGAK 60
           MQATESARAKIQAN+SPRSSPDVQDRD YIKKRHSLP ANGR GSPRIQRS+SQAQQG K
Sbjct: 738 MQATESARAKIQANSSPRSSPDVQDRD-YIKKRHSLPGANGRQGSPRIQRSMSQAQQGTK 796

Query: 61  GNGTLHVTCPNTDLGTVGLLDVTVHIFKPQ 90
           GNG+           T+ L+   V +F+P+
Sbjct: 797 GNGSQD--------ETLLLVPYFVDVFRPK 818




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492201|ref|XP_003634378.1| PREDICTED: protein IQ-DOMAIN 32-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065982|ref|XP_002301992.1| predicted protein [Populus trichocarpa] gi|222843718|gb|EEE81265.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449477051|ref|XP_004154914.1| PREDICTED: LOW QUALITY PROTEIN: protein IQ-DOMAIN 32-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449460269|ref|XP_004147868.1| PREDICTED: protein IQ-DOMAIN 32-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224082964|ref|XP_002306910.1| predicted protein [Populus trichocarpa] gi|222856359|gb|EEE93906.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509638|ref|XP_003523553.1| PREDICTED: protein IQ-DOMAIN 32-like [Glycine max] Back     alignment and taxonomy information
>gi|356518122|ref|XP_003527731.1| PREDICTED: protein IQ-DOMAIN 32-like [Glycine max] Back     alignment and taxonomy information
>gi|357438241|ref|XP_003589396.1| IQ domain-containing protein [Medicago truncatula] gi|355478444|gb|AES59647.1| IQ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388510968|gb|AFK43550.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
TAIR|locus:2035428794 iqd32 "AT1G19870" [Arabidopsis 0.560 0.075 0.693 2.2e-15
TAIR|locus:2035428 iqd32 "AT1G19870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 205 (77.2 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 43/62 (69%), Positives = 50/62 (80%)

Query:     1 MQATESARAKIQANNSPRSSPDVQDRDTY-IKKRHSLP-VANGRHGSPRIQRSLSQAQQG 58
             MQ T+SA+AK+Q +NSPRSSPD+Q+RD    KKRHSLP V NG+  SPRIQRS SQAQQG
Sbjct:   727 MQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSASQAQQG 786

Query:    59 AK 60
              K
Sbjct:   787 TK 788


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      107       107   0.00091  102 3  11 22  0.43    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  106 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.13u 0.09s 12.22t   Elapsed:  00:00:00
  Total cpu time:  12.13u 0.09s 12.22t   Elapsed:  00:00:00
  Start:  Thu May  9 20:33:04 2013   End:  Thu May  9 20:33:04 2013


GO:0005516 "calmodulin binding" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00014465001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (414 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
pfam13178105 pfam13178, DUF4005, Protein of unknown function (D 3e-08
>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005) Back     alignment and domain information
 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 1   MQATESARAKIQANNSPRSSPDVQDRDTY--IKKRHSLPVAN---GRHGSPRIQRSLSQA 55
           M ATESA+AK+++ ++PR  P+ ++R++     KR SLPV++   G   S         A
Sbjct: 41  MAATESAKAKVRSQSAPRQRPETEERESGSSATKRLSLPVSSSSGGSSSSSPRTSGGKGA 100

Query: 56  QQ 57
            +
Sbjct: 101 LR 102


This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 107
PF13178102 DUF4005: Protein of unknown function (DUF4005) 99.48
>PF13178 DUF4005: Protein of unknown function (DUF4005) Back     alignment and domain information
Probab=99.48  E-value=2.3e-14  Score=99.53  Aligned_cols=44  Identities=43%  Similarity=0.587  Sum_probs=36.9

Q ss_pred             CccchhhhhhhhccCCCCCCCCccccc--ccccceeccccC-CCCCC
Q 045606            1 MQATESARAKIQANNSPRSSPDVQDRD--TYIKKRHSLPVA-NGRHG   44 (107)
Q Consensus         1 MAATESAKAKlRsqsSPR~rpd~~ek~--~~~kkR~SLPss-NGk~~   44 (107)
                      ||+|||||||+|+|++||++++..|..  ...+||||||.+ ++...
T Consensus        38 Ma~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~   84 (102)
T PF13178_consen   38 MAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSS   84 (102)
T ss_pred             cchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcC
Confidence            999999999999999999999987543  267899999976 44443




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00