Citrus Sinensis ID: 045632

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--

MKNFGSSSMKPGLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGGKAWKLS

ccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccEEEEccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEccccccEEHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccEEcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccc

cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEHcccEEEEEEccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEEEEEHHHHHHcccccccccccHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEccccccEccccccccccccccccccccccEEcccccHcHEEEEEEEEEccccccccccccEEEEc

mknfgsssmkpgliFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLlsvtkprthstdpktfDVFFTSVsaatdssmgtVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIksklpkhndhllitpsskptksvEQIELnsiccsektdhisfdnknnknknnntilkhNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTfsncgfvptnenmIVFKENSGLLLLLIPQvllgntlyPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVnsrhtgesvldlsiisPAILVLFVVMMylppytsflparncdegdskncrEKEKETKSLLECLAFSQLSYLAIFIILICITErhkmkqdplnfNVLSITIEVISAYgnvgfstgyscerqlkpeisckdkwfglvgkwsnggKLILILVMFFGRIKKfnmkggkawkls

mknfgsssmkpgLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLitpsskptksvEQIELNSICCSEKTDhisfdnknnknknnntiLKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFnmkggkawkls

MKNFGSSSMKPGLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDnknnknknnnTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGlllllipqvllGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGGKAWKLS

***********GLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLI************IELNSICCSEKTDHI************NTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNC****************SLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKG*******

*********KPGLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHND********************SICCSEKTDHISF***************HNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEGDSK****KEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGGKAWKLS

********MKPGLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSS********IELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEG************KSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNM*********

*KNFGSSSMKPGLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPK*********************************IS***KN*****NNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGGKAWKLS

oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiii

oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		532	2.2.26 [Sep-21-2011]
Q6H501		530	Probable cation transport	yes	no	0.917	0.920	0.510	1e-128
Q84TI7		506	Sodium transporter HKT1 O	yes	no	0.843	0.887	0.508	1e-127
Q0D9S3		530	Cation transporter HKT1 O	no	no	0.936	0.939	0.430	1e-113
A2YGP9		530	Cation transporter HKT1 O	N/A	no	0.936	0.939	0.430	1e-113
A2WNZ9		554	Cation transporter HKT8 O	N/A	no	0.926	0.889	0.452	1e-112
Q93XI5		530	Cation transporter HKT2 O	N/A	no	0.932	0.935	0.432	1e-112
Q0JNB6		554	Cation transporter HKT8 O	no	no	0.926	0.889	0.448	1e-111
Q7XPF7		500	Probable cation transport	no	no	0.907	0.966	0.496	1e-111
Q7XPF8		552	Cation transporter HKT4 O	no	no	0.890	0.858	0.431	1e-107
Q8L481		509	Probable cation transport	no	no	0.915	0.956	0.388	1e-93

>sp\|Q6H501\|HKT6_ORYSJ Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=1	Back alignment and function desciption

 Score =  460 bits (1183), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/496 (51%), Positives = 337/496 (67%), Gaps = 8/496 (1%)

Query: 36  YIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEME 95
           Y  NPL +H+ YF  +S  GY  L V KPR  S   K  DV FTSVSA+T SSM TVEME
Sbjct: 42  YQNNPLFVHVAYFALISFAGYGSLKVLKPRDKSNTLKDLDVLFTSVSASTVSSMATVEME 101

Query: 96  VFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTKSVEQIELNS 155
            FS++QL ++TILML GGEVF SML + F++++        + T    P   +E I    
Sbjct: 102 DFSSAQLWVLTILMLIGGEVFTSMLGIHFMRAEFGTKES--VSTRDHSPCIDIESITSTK 159

Query: 156 ICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLI 215
              S +   ++      + +N   + +  +I++L +VV+GY LI ++GG  L+  Y++L+
Sbjct: 160 FGPSTQGTKVTVSFSELRMENGGHV-EPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLV 218

Query: 216 PSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNT 275
           PSA  +L++KG+    FS+FT +S+  NCGF P NENMI+F++NS LLLL++PQ+L GNT
Sbjct: 219 PSAHKILKRKGIGIIVFSVFTAISSVGNCGFTPVNENMIIFQKNSILLLLILPQILAGNT 278

Query: 276 LYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVI 335
           L+  CLR  +W L+KIT +++C Y+L+  + IGY HL+S   S +L +TV   II+Q V+
Sbjct: 279 LFAPCLRLMVWSLEKITGKKDCRYILEYPKAIGYKHLMSTRESVYLTLTVVSLIILQTVL 338

Query: 336 FCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPY 395
           F SLEW+S A+D ++ YQK+V++LF+ VN+RH GESV DLS +S AILVL+ +MMYLP Y
Sbjct: 339 FLSLEWSSVALDGMSNYQKIVSALFQSVNARHAGESVTDLSNLSSAILVLYTIMMYLPGY 398

Query: 396 TSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLN 455
           TSFLP    D  DSK   EK  + K LLE   FS +SYLAIF++LICITER  M  DPLN
Sbjct: 399 TSFLPRH--DGEDSKT--EKINKRKGLLENWIFSHMSYLAIFVMLICITERDSMATDPLN 454

Query: 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFF 515
           FNV SI  EV+ AYGNVGFS GYSC+R L  +  CKD  +G  GKWS+ GK ILI+VM F
Sbjct: 455 FNVFSILFEVV-AYGNVGFSVGYSCKRLLNHDARCKDASYGFAGKWSDNGKAILIIVMLF 513

Query: 516 GRIKKFNMKGGKAWKL 531
           GR+K FNMKGG+AWKL
Sbjct: 514 GRLKTFNMKGGRAWKL 529

Probable cation transporter. May be involved in regulation of K(+)/Na(+) homeostasis.
Oryza sativa subsp. japonica (taxid: 39947)

>sp\|Q84TI7\|HKT1_ARATH Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1	Back alignment and function description

>sp\|Q0D9S3\|HKT1_ORYSJ Cation transporter HKT1 OS=Oryza sativa subsp. japonica GN=HKT1 PE=1 SV=1	Back alignment and function description

>sp\|A2YGP9\|HKT1_ORYSI Cation transporter HKT1 OS=Oryza sativa subsp. indica GN=HKT1 PE=1 SV=2	Back alignment and function description

>sp\|A2WNZ9\|HKT8_ORYSI Cation transporter HKT8 OS=Oryza sativa subsp. indica GN=HKT8 PE=2 SV=2	Back alignment and function description

>sp\|Q93XI5\|HKT2_ORYSI Cation transporter HKT2 OS=Oryza sativa subsp. indica GN=HKT2 PE=1 SV=1	Back alignment and function description

>sp\|Q0JNB6\|HKT8_ORYSJ Cation transporter HKT8 OS=Oryza sativa subsp. japonica GN=HKT8 PE=3 SV=1	Back alignment and function description

>sp\|Q7XPF7\|HKT7_ORYSJ Probable cation transporter HKT7 OS=Oryza sativa subsp. japonica GN=HKT7 PE=2 SV=2	Back alignment and function description

>sp\|Q7XPF8\|HKT4_ORYSJ Cation transporter HKT4 OS=Oryza sativa subsp. japonica GN=HKT4 PE=1 SV=2	Back alignment and function description

>sp\|Q8L481\|HKT3_ORYSJ Probable cation transporter HKT3 OS=Oryza sativa subsp. japonica GN=HKT3 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
224144234		506	sodium transporter hkt1-like protein [Po	0.945	0.994	0.608	1e-161
359484991		551	PREDICTED: sodium transporter HKT1-like	0.960	0.927	0.563	1e-161
29424041		543	high affinity potassium transporter 2 [M	0.949	0.930	0.558	1e-159
225446300		545	PREDICTED: sodium transporter HKT1-like	0.951	0.928	0.556	1e-158
147817820		641	hypothetical protein VITISV_025919 [Viti	0.960	0.797	0.555	1e-157
296090313		524	unnamed protein product [Vitis vinifera]	0.906	0.919	0.553	1e-156
225446305		590	PREDICTED: probable cation transporter H	0.928	0.837	0.557	1e-155
9719299		550	potassium-sodium symporter HKT1 [Eucalyp	0.964	0.932	0.538	1e-154
296090315		529	unnamed protein product [Vitis vinifera]	0.932	0.937	0.555	1e-154
296090314		540	unnamed protein product [Vitis vinifera]	0.934	0.920	0.550	1e-154

>gi\|224144234\|ref\|XP_002325229.1\| sodium transporter hkt1-like protein [Populus trichocarpa] gi\|222866663\|gb\|EEF03794.1\| sodium transporter hkt1-like protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 311/511 (60%), Positives = 392/511 (76%), Gaps = 8/511 (1%)

Query: 24  CFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSA 83
           C + +F+ + V + ++P  + L YF  LSL+G+  L V+KPR  S  P + D+FFTSVS+
Sbjct: 2   CSIRSFLRVLV-FQIHPFWVQLAYFVILSLVGHMALKVSKPRPGSLRPASLDIFFTSVSS 60

Query: 84  ATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHN--DHLLITPS 141
           AT SSM TVEMEVFSN+QLIIMTILML GGEVF S+L L+  + K  KH   +  + +  
Sbjct: 61  ATVSSMSTVEMEVFSNTQLIIMTILMLLGGEVFTSILGLYLSRFKFSKHETKESRVSSVY 120

Query: 142 SKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVH 201
             P K      L      EK  ++  +   N   N+++ LK NS++ L  V LGYF +VH
Sbjct: 121 HNPPKRTNFPGLEI----EKPTNVDLECNLNSLDNDHS-LKLNSLKSLACVALGYFSVVH 175

Query: 202 VGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSG 261
           + G  LV  Y SL+PSA+ VL  KG++ +TFS+FT VSTFSNCGFVPTNENM+ FK+NSG
Sbjct: 176 ITGSSLVAMYTSLVPSARQVLGSKGIKIQTFSVFTTVSTFSNCGFVPTNENMVAFKKNSG 235

Query: 262 LLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFL 321
           LLL+LIPQ+LLGNTLYP+CLRF IW+L+KIT++ E  Y+L N RE+GY HLLS S SC L
Sbjct: 236 LLLILIPQILLGNTLYPSCLRFLIWILEKITRKVEFRYILMNTREMGYGHLLSFSHSCLL 295

Query: 322 AITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPA 381
           AITV GFI+VQ ++FCS+EWNS A D LN YQKL+ +LF+VVNSRHTGES++DLSIISPA
Sbjct: 296 AITVSGFILVQFILFCSMEWNSGAKDGLNPYQKLMGALFQVVNSRHTGESIVDLSIISPA 355

Query: 382 ILVLFVVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILI 441
           ILVLFVVMMYLPPYTSF+P +  +E DS+  ++ + + KSL++CL FS LS LAIF+ILI
Sbjct: 356 ILVLFVVMMYLPPYTSFMPKKQQEEVDSETGQKCKNQRKSLVQCLLFSPLSTLAIFVILI 415

Query: 442 CITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKW 501
           C++ER K+K+DPLNFNVL+ITIEV+SAYGNVGFSTGYSC+RQL+P+ SCKD WFG VG+W
Sbjct: 416 CVSEREKLKKDPLNFNVLNITIEVVSAYGNVGFSTGYSCKRQLEPDSSCKDAWFGFVGRW 475

Query: 502 SNGGKLILILVMFFGRIKKFNMKGGKAWKLS 532
           SN GK ILILVMFFGR+KKF++ GGKAWKLS
Sbjct: 476 SNMGKFILILVMFFGRLKKFSINGGKAWKLS 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359484991\|ref\|XP_002270183.2\| PREDICTED: sodium transporter HKT1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|29424041\|gb\|AAO73474.1\| high affinity potassium transporter 2 [Mesembryanthemum crystallinum]	Back alignment and taxonomy information

>gi\|225446300\|ref\|XP_002270300.1\| PREDICTED: sodium transporter HKT1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147817820\|emb\|CAN68938.1\| hypothetical protein VITISV_025919 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296090313\|emb\|CBI40132.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225446305\|ref\|XP_002267717.1\| PREDICTED: probable cation transporter HKT6-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9719299\|gb\|AAF97728.1\|AF176035_1 potassium-sodium symporter HKT1 [Eucalyptus camaldulensis]	Back alignment and taxonomy information

>gi\|296090315\|emb\|CBI40134.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296090314\|emb\|CBI40133.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
TAIR\|locus:2122749		506	HKT1 "high-affinity K+ transpo	0.883	0.928	0.486	1.5e-115
ASPGD\|ASPL0000033664		673	trkA [Emericella nidulans (tax	0.556	0.439	0.295	3.8e-28
POMBASE\|SPAC3F10.02c		841	trk1 "potassium ion transporte	0.558	0.353	0.268	2.5e-24
SGD\|S000003665		1235	TRK1 "Component of the Trk1p-T	0.396	0.170	0.258	1.2e-23
DICTYBASE\|DDB_G0292412		648	DDB_G0292412 "cation transport	0.537	0.441	0.262	7.6e-23
ASPGD\|ASPL0000054337		671	trkC [Emericella nidulans (tax	0.387	0.307	0.251	1.3e-20
SGD\|S000001758		889	TRK2 "Component of the Trk1p-T	0.385	0.230	0.246	1.1e-18
POMBASE\|SPAC1639.02c		880	trk2 "potassium ion transporte	0.398	0.240	0.256	3.2e-18
ASPGD\|ASPL0000011729		829	trkB [Emericella nidulans (tax	0.426	0.273	0.252	5.9e-18
UNIPROTKB\|G4MU45		642	MGG_07233 "Uncharacterized pro	0.392	0.325	0.257	7.9e-18

TAIR\|locus:2122749 HKT1 "high-affinity K+ transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 242/497 (48%), Positives = 324/497 (65%)

Query:    43 LHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQL 102
             L+  YF   S LG+  L +TKPRT S  P  FD+FFTSVSA T SSM TV+MEVFSN+QL
Sbjct:    24 LYFIYFLFFSFLGFLALKITKPRTTSR-PHDFDLFFTSVSAITVSSMSTVDMEVFSNTQL 82

Query:   103 IIMTILMLAGGEVFMSMLELF---FIKSKLPKHNDHLLITPSSKPTKSVE-QIELNSICC 158
             I +TILM  GGE+F S L L+   F K   P HN    I  S     S+E + ++ ++  
Sbjct:    83 IFLTILMFLGGEIFTSFLNLYVSYFTKFVFP-HNKIRHILGSYNSDSSIEDRCDVETV-- 139

Query:   159 SEKTDHISFDXXXXXXXXXXTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSA 218
                TD+                +   + + L  VVL Y L+ ++ G  L+L Y++ + +A
Sbjct:   140 ---TDY----------REGLIKIDERASKCLYSVVLSYHLVTNLVGSVLLLVYVNFVKTA 186

Query:   219 KHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGXXXXXXXXXXXGNTLYP 278
             + VL  K +   TFS+FT VSTF+NCGFVPTNENMI+F++NSG           GNTL+P
Sbjct:   187 RDVLSSKEISPLTFSVFTTVSTFANCGFVPTNENMIIFRKNSGLIWLLIPQVLMGNTLFP 246

Query:   279 ACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCS 338
               L   IW L KITKR+E  Y+LKN+ ++GY HLLS      L +TV GF+I+QL+ FC+
Sbjct:   247 CFLVLLIWGLYKITKRDEYGYILKNHNKMGYSHLLSVRLCVLLGVTVLGFLIIQLLFFCA 306

Query:   339 LEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSF 398
              EW SE+++ ++ Y+KLV SLF+VVNSRHTGE+++DLS +SPAILVLF++MMYLPPYT F
Sbjct:   307 FEWTSESLEGMSSYEKLVGSLFQVVNSRHTGETIVDLSTLSPAILVLFILMMYLPPYTLF 366

Query:   399 LPA---RNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLN 455
             +P    +  ++    +  E  K+ K     L  SQLS+L I I LI ITER  +++DP+N
Sbjct:   367 MPLTEQKTIEKEGGDDDSENGKKVKK--SGLIVSQLSFLTICIFLISITERQNLQRDPIN 424

Query:   456 FNVLSITIEVISAYGNVGFSTGYSCERQLK-PEISCKDKWFGLVGKWSNGGKLILILVMF 514
             FNVL+IT+EVISAYGNVGF+TGYSCER++   +  CKD  +G  G+WS  GK +LI+VMF
Sbjct:   425 FNVLNITLEVISAYGNVGFTTGYSCERRVDISDGGCKDASYGFAGRWSPMGKFVLIIVMF 484

Query:   515 FGRIKKFNMKGGKAWKL 531
             +GR K+F  K G+AW L
Sbjct:   485 YGRFKQFTAKSGRAWIL 501

GO:0008324 "cation transmembrane transporter activity" evidence=IEA

GO:0015079 "potassium ion transmembrane transporter activity" evidence=IEA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA

GO:0006814 "sodium ion transport" evidence=IMP;IDA

GO:0009651 "response to salt stress" evidence=IGI;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

ASPGD\|ASPL0000033664 trkA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

POMBASE\|SPAC3F10.02c trk1 "potassium ion transporter Trk1" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

SGD\|S000003665 TRK1 "Component of the Trk1p-Trk2p potassium transport system" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0292412 DDB_G0292412 "cation transporter" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000054337 trkC [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000001758 TRK2 "Component of the Trk1p-Trk2p potassium transport system" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

POMBASE\|SPAC1639.02c trk2 "potassium ion transporter Trk2" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000011729 trkB [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MU45 MGG_07233 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6H501	HKT6_ORYSJ	No assigned EC number	0.5100	0.9172	0.9207	yes	no
Q84TI7	HKT1_ARATH	No assigned EC number	0.5082	0.8439	0.8873	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		532
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	1e-99
pfam02386		334	pfam02386, TrkH, Cation transport protein	7e-32
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	4e-12
COG0168		499	COG0168, TrkG, Trk-type K+ transport systems, memb	6e-12
TIGR00933		390	TIGR00933, 2a38, potassium uptake protein, TrkH fa	1e-09

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

 Score =  318 bits (816), Expect = 1e-99
 Identities = 120/365 (32%), Positives = 190/365 (52%), Gaps = 30/365 (8%)

Query: 185 SIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNC 244
           +++ LC +VL YFL  ++ G  L+L +I+ + +   V+  KG+    +  FT +S F+N 
Sbjct: 447 ALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANL 506

Query: 245 GFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKIT----KREECDYL 300
           G   T E+M+ F +NS LLLL+I  +++GNT +P  LR  IW+L KI+    KR+E    
Sbjct: 507 GLTLTPESMVSFNKNSYLLLLMIWFIIIGNTGFPIFLRLIIWILFKISPDLSKRKESLGF 566

Query: 301 LKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLF 360
           L ++    +  L     + +L  T+ G   + L++F  L+W S  +D L+   K++  LF
Sbjct: 567 LLDHPRRCFTLLFPSGATWWLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLF 626

Query: 361 EVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPAR--NCDEGDSKNC------ 412
           + V++R  G +V+DLS + PAI V +++MMY+      +  R  N  E  S         
Sbjct: 627 QSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLGLYNEENE 686

Query: 413 -REKEKETKSLLECLAFSQLS----YLAIFIILICITERHKMKQ-DPLNFNVLSITIEVI 466
             E E  TKS +      QLS    Y+ + + +ICI E  K++  DP NFNV +I  EV+
Sbjct: 687 EHEGESSTKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRKIQDPDPPNFNVFNILFEVV 746

Query: 467 SAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGG 526
           SAYG VG S GYSC                  G+++   KL++I ++  GR +       
Sbjct: 747 SAYGTVGLSLGYSCSNY------------SFSGQFTTLSKLVIIAMLIRGRHRGLPYALD 794

Query: 527 KAWKL 531
           +A  L
Sbjct: 795 RAIIL 799

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system [Transport and binding proteins, Cations and iron carrying compounds]. Length = 800

>gnl\|CDD\|217009 pfam02386, TrkH, Cation transport protein	Back alignment and domain information

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

>gnl\|CDD\|223246 COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233196 TIGR00933, 2a38, potassium uptake protein, TrkH family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		532
TIGR00934		800	2a38euk potassium uptake protein, Trk family. The	100.0
PRK10750		483	potassium transporter; Provisional	100.0
TIGR00933		390	2a38 potassium uptake protein, TrkH family. The pr	100.0
COG0168		499	TrkG Trk-type K+ transport systems, membrane compo	100.0
KOG1341		854	consensus Na+/K+ transporter [Inorganic ion transp	100.0
PF02386		354	TrkH: Cation transport protein; InterPro: IPR00344	100.0
PRK05482		559	potassium-transporting ATPase subunit A; Provision	99.92
TIGR00933		390	2a38 potassium uptake protein, TrkH family. The pr	99.91
TIGR00934		800	2a38euk potassium uptake protein, Trk family. The	99.83
PRK10750		483	potassium transporter; Provisional	99.81
COG0168		499	TrkG Trk-type K+ transport systems, membrane compo	99.73
PF02386		354	TrkH: Cation transport protein; InterPro: IPR00344	99.7
PRK05482		559	potassium-transporting ATPase subunit A; Provision	99.09
KOG1341		854	consensus Na+/K+ transporter [Inorganic ion transp	98.52
PF03814		552	KdpA: Potassium-transporting ATPase A subunit; Int	97.11
TIGR00680		563	kdpA K+-transporting ATPase, KdpA. Kdp is a high a	97.05
COG2060		560	KdpA K+-transporting ATPase, A chain [Inorganic io	96.88
TIGR00680		563	kdpA K+-transporting ATPase, KdpA. Kdp is a high a	85.5

>TIGR00934 2a38euk potassium uptake protein, Trk family	Back alignment and domain information

Probab=100.00  E-value=1.2e-65  Score=560.16  Aligned_cols=335  Identities=33%  Similarity=0.586  Sum_probs=290.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChh
Q 045632          182 KHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSG  261 (532)
Q Consensus       182 ~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~  261 (532)
                      ||++++.+.++++.||+++.++|++++..|....+.++..+++++.+++|.|+|||+|||||+||++.++|+.+|+.+++
T Consensus       444 EYRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~~~~~~l~~~gin~~W~aiFhAVSAFnNAGFsL~~dSM~~F~~~~~  523 (800)
T TIGR00934       444 EYRALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANLGLTLTPESMVSFNKNSY  523 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHhhcCccHHHHHHHHHHHHHhcCCCCcCCCcchhhccCcc
Confidence            48999999999999999999999999998887555566677777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhhh-----hhhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 045632          262 LLLLLIPQVLLGNTLYPACLRFAIWVLKKIT-----KREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIF  336 (532)
Q Consensus       262 ~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~-----~~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l  336 (532)
                      +++++++++++||+|||+++++++|...|..     .++..+.++++|||| +.++||+.++|+++.+++++++++++++
T Consensus       524 vllvm~~LIi~GntGFPVllrliiw~~~k~~~~~s~~~e~l~fll~~pRr~-~s~Lfps~~T~ill~tt~iL~~ig~ilf  602 (800)
T TIGR00934       524 LLLLMIWFIIIGNTGFPIFLRLIIWILFKISPDLSKRKESLGFLLDHPRRC-FTLLFPSGATWWLFFTLVGLNAIDLILF  602 (800)
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHhhccccccchhhhhhhhccCccce-ecccccccchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888766643     234455677889987 6778999999999999999999999999


Q ss_pred             HHHhcCccccCCCCHHHHHHHHHHHhhccCCccccCccCCCCchhHHHHHHHHhhcCCcceEEeccc-------------
Q 045632          337 CSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARN-------------  403 (532)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~alFqsvSa~TaGFs~~~~~~~~~~~~~iliilMfIGgstt~~~~r~-------------  403 (532)
                      +++||++++++++++++++.+++||++++|||||+++|++.+++++++++++|||||++|+.+-+|.             
T Consensus       603 ~lLE~nn~tl~~lp~g~Ril~aLFQSVstRTAGFntVdls~Lspatlvl~iiLMyIGa~PtaggIK~TTvyee~sLgi~~  682 (800)
T TIGR00934       603 IILDWGSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLGLYN  682 (800)
T ss_pred             HHHhcCccccccCCHHHHHHHHHHHhcccccccccccchHhcChhHHHHHHHHHHhccCCccceeeceeeeheeheeeee
Confidence            9999988788999999999999999999999999999999999999999999999999775333322             


Q ss_pred             ---cccCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-CCCCccHHHHHHHHhcccCccccCCCcc
Q 045632          404 ---CDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQ-DPLNFNVLSITIEVISAYGNVGFSTGYS  479 (532)
Q Consensus       404 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~i~~~~i~~~e~~~~~~-~~~~~~~~~~lFevvSA~~tvGls~G~~  479 (532)
                         +++.  ...+++++....+.+++.+. ++++++++++++++|..+..+ ++.++++++++|||+|||||||+|+|+ 
T Consensus       683 ~~g~~~~--~~~~~rsi~~~~irrqLs~d-lw~I~l~~flI~I~E~~~l~~~~~~~fs~f~ILFEVVSAyGTVGLSlG~-  758 (800)
T TIGR00934       683 EENEEHE--GESSTKSFIGAHLRRQLSFD-LWYIFLGLFIICICEGRKIQDPDPPNFNVFNILFEVVSAYGTVGLSLGY-  758 (800)
T ss_pred             ccCCccc--cccccccccHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccccccccccHHHHHhhhhhhccceeecCCC-
Confidence               1111  01245666666677766544 667778888999999766543 556689999999999999999999998 


Q ss_pred             CccccCccccccCccccccccCChHHHHHHHHHHHhcCCCCCccCCCcceecC
Q 045632          480 CERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGGKAWKLS  532 (532)
Q Consensus       480 ~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGRl~~~~~~gg~~~~~~  532 (532)
                                 |+.||||+|+|++.+|+|+|++|++|||+++|.+.+|||+|.
T Consensus       759 -----------p~~~~SfSg~ls~~sKLVII~vM~~GRhggLP~alDrAi~LP  800 (800)
T TIGR00934       759 -----------SCSNYSFSGQFTTLSKLVIIAMLIRGRHRGLPYALDRAIILP  800 (800)
T ss_pred             -----------CCcccccCCCCCcchHHHHhHHHHccCCCCCcccccceecCC
Confidence                       468999999999999999999999999999999999999983

>PRK10750 potassium transporter; Provisional	Back alignment and domain information

>TIGR00933 2a38 potassium uptake protein, TrkH family	Back alignment and domain information

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3	Back alignment and domain information

>PRK05482 potassium-transporting ATPase subunit A; Provisional	Back alignment and domain information

>TIGR00933 2a38 potassium uptake protein, TrkH family	Back alignment and domain information

>TIGR00934 2a38euk potassium uptake protein, Trk family	Back alignment and domain information

>PRK10750 potassium transporter; Provisional	Back alignment and domain information

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3	Back alignment and domain information

>PRK05482 potassium-transporting ATPase subunit A; Provisional	Back alignment and domain information

>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli	Back alignment and domain information

>TIGR00680 kdpA K+-transporting ATPase, KdpA	Back alignment and domain information

>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00680 kdpA K+-transporting ATPase, KdpA	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		532
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 48/328 (14%), Positives = 90/328 (27%), Gaps = 110/328 (33%)

Query: 39  NPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFD----VFFTSVSAATDSSMGTVE- 93
           NP          LS++   +              T+D    V    ++   +SS+  +E 
Sbjct: 326 NPR--------RLSIIAESI---------RDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 94  ---------MEVFSNSQLIIMTILML----AGGEVFMSMLELFFIKSKLPKHND------ 134
                    + VF  S  I   +L L          M ++      S + K         
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 135 HLLITPSSKPTKSVEQIELNSICCSEKTDH---ISFDNKNNKNKNNNTILKHNSIRYLCY 191
             +             +EL     +E   H   +   N      +++ I  +        
Sbjct: 429 PSI------------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------ 470

Query: 192 VVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNE 251
               YF             +I       H L+      E  +LF +V  F +  F+   E
Sbjct: 471 ---QYF-----------YSHI-----GHH-LKNIE-HPERMTLFRMV--FLDFRFL---E 504

Query: 252 NMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREEC-DYLLKNYRE--IG 308
             I    +          +L  NTL    L+F       I   +   + L+    +    
Sbjct: 505 QKI---RHDSTAWNASGSIL--NTL--QQLKF---YKPYICDNDPKYERLVNAILDFLPK 554

Query: 309 YDHLLSRSRSCFLAITVFGFIIVQLVIF 336
            +  L  S+            ++++ + 
Sbjct: 555 IEENLICSKYT---------DLLRIALM 573

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		532
3pjz_A		494	Potassium uptake protein TRKH; structural genomics	100.0
3pjz_A		494	Potassium uptake protein TRKH; structural genomics	99.85
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	92.68
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	90.72
2q67_A		114	Potassium channel protein; inverted teepee, helix	89.53
3um7_A		309	Potassium channel subfamily K member 4; potassium	87.98
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	87.16
3um7_A		309	Potassium channel subfamily K member 4; potassium	86.24
3ouf_A		97	Potassium channel protein; ION channel, membrane,	84.48
2k1e_A		103	Water soluble analogue of potassium channel, KCSA;	84.45
3ldc_A		82	Calcium-gated potassium channel MTHK; transmembran	81.0
3ouf_A		97	Potassium channel protein; ION channel, membrane,	80.98
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	80.45
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	80.28

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}	Back alignment and structure

Probab=100.00  E-value=1.6e-58  Score=496.10  Aligned_cols=384  Identities=14%  Similarity=0.172  Sum_probs=289.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceee-CCccChHHHHHHHHHHHHhhhHHHHHH
Q 045632           42 MLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVE-MEVFSNSQLIIMTILMLAGGEVFMSML  120 (532)
Q Consensus        42 ~l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~-~~~~~~~~q~ii~~Li~iGGlG~~~~~  120 (532)
                      .++.+.|++++++|++|+++.    ...+.+++||+|||+||+||||++++| +|++++..+.|+.+++|+||+|++++.
T Consensus        71 ~~v~l~W~~~~~~galPf~~~----~~~~~s~~dA~Fes~Sg~TtTG~tv~~~~~~lp~~~l~wr~~l~wlGGlGiivla  146 (494)
T 3pjz_A           71 LIVVLFWTVLGSAGSLPFLIA----DNPNISVTDAFFESFSALTTTGATVIVGLDELPKAILFYRQFLQWFGGMGIIVLA  146 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC----CSSCCCHHHHHHHHHHHHTTCCCCCCCCCSSSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHHhhcCCeEEecChhhccchHHHHHHHHHHHhhHHHHHHH
Confidence            667789999999999999972    122478999999999999999999998 599999999999999999999999999


Q ss_pred             HHHHHhccCC-CcccccccCCCCCCCchhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHH
Q 045632          121 ELFFIKSKLP-KHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLI  199 (532)
Q Consensus       121 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~  199 (532)
                      ..+++..+.+ +++.                       ++|..+      +.   + +++..  +.++.++|.++.+|+.
T Consensus       147 ~ail~~lg~~~~~l~-----------------------~ae~~g------~~---~-~~k~~--p~i~~ta~~l~~iy~~  191 (494)
T 3pjz_A          147 VAILPVLGIGGMQLY-----------------------RAEIPG------PV---K-DTKMT--PRIAETAKALWYIYLS  191 (494)
T ss_dssp             TSSTTTTSCCCC-------------------------------------------------C--SSSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchhhhH-----------------------HHhccC------Cc---c-ccccC--ccHHHHHHHHHHHHHH
Confidence            8888765522 2221                       223321      10   0 11222  3446678899999999


Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHH
Q 045632          200 VHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPA  279 (532)
Q Consensus       200 i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v  279 (532)
                      +++++++++.  ..   +          +++|||+|||+||+||+|||+.|+|+++| +|+.++++++++|++||+||++
T Consensus       192 lt~~~~l~l~--~~---G----------m~~fdAi~Ha~Sa~~tgGFs~~~~Si~~~-~s~~i~~vi~~~milggl~F~v  255 (494)
T 3pjz_A          192 LTIACAVAFW--LA---G----------MTPFDAISHSFSTIAIGGFSTHDASMGYF-DSYAINLITVVFLLISACNFTL  255 (494)
T ss_dssp             HHHHHHHHHH--HH---T----------CCSHHHHTTTHHHHTTCCCCSSTTGGGSS-CCTTHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHH--Hc---C----------CcHHHHHHHHHHHHhCCCCCCccchhhhh-cCHHHHHHHHHHHHHHhccHHH
Confidence            9998776543  22   2          58999999999999999999999999887 6889999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhh-hhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHH
Q 045632          280 CLRFAIWVLKKITKRE-ECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVAS  358 (532)
Q Consensus       280 ~~~~~~~~~~r~~~~~-~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~a  358 (532)
                      ++++.     |  +|+ +.            ++++.+.|+|.++.+.+++.++.++.++..+    .+  .++.++++++
T Consensus       256 ~~~~~-----~--~~~~~~------------~~~~~~~e~r~~l~~~~~~~~~~~~~l~~~~----~~--~~~~~~l~~a  310 (494)
T 3pjz_A          256 HFAAF-----A--SGGVHP------------KYYWKDPEFRAFIFIQVLLFLVCFLLLLKHH----SY--TSPYDAFDQA  310 (494)
T ss_dssp             HHHHT-----T--TSTTCH------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT----CC--SSHHHHHHHH
T ss_pred             HHHHH-----h--cccchh------------hHHhCCcHHHhhHHHHHHHHHHHHHHHHHcc----cc--CCHHHHHHHH
Confidence            98742     1  110 11            1222357888888777666655554443222    11  2689999999


Q ss_pred             HHHhhccC-CccccCccCCCCchhHHHHHHHHhhcCC---cceEEe--------cc---c--cccCCCC-----Cccccc
Q 045632          359 LFEVVNSR-HTGESVLDLSIISPAILVLFVVMMYLPP---YTSFLP--------AR---N--CDEGDSK-----NCREKE  416 (532)
Q Consensus       359 lFqsvSa~-TaGFs~~~~~~~~~~~~~iliilMfIGg---stt~~~--------~r---~--~~~~~~~-----~~~~~~  416 (532)
                      +||++|++ |+||++.|+++|++.++++++++|||||   ||+..+        +|   .  ++..||+     ++++|+
T Consensus       311 ~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P~~v~~v~~~~r~  390 (494)
T 3pjz_A          311 LFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHPRAVYTIKVGGSA  390 (494)
T ss_dssp             HHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCSSSCCCCCSSSCC
T ss_pred             HHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCCCcceeeeECCEE
Confidence            99999995 5599999999999999999999999997   564321        11   1  2223553     457888


Q ss_pred             ccchhHHHHHHHHHHHHHHHH--HHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCcc
Q 045632          417 KETKSLLECLAFSQLSYLAIF--IILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKW  494 (532)
Q Consensus       417 ~~~~~i~~~~~~~~l~~~~i~--~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~  494 (532)
                      ++++.+.++..+..++.+++.  .+++.+.+          .|+.+++||++||++|||+++|.+     ||       |
T Consensus       391 i~~~~v~~~~~~~~ly~~~~~~~~~~l~~~g----------~~~~~a~~~v~Sal~nvG~s~G~v-----g~-------~  448 (494)
T 3pjz_A          391 LPQRVVDAVWGFFSAYALVFVVCMLGLIATG----------MDELSAFSAVAATLNNLGPGLGEV-----AL-------H  448 (494)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS----------SCHHHHHHHHHHHTTTCCSCCSSS-----CC-------C
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHcCCCCccccc-----CC-------C
Confidence            998888888877766655443  33333332          689999999999999999999974     32       4


Q ss_pred             ccccccCChHHHHHHHHHHHhcCCCCCcc---CCCccee
Q 045632          495 FGLVGKWSNGGKLILILVMFFGRIKKFNM---KGGKAWK  530 (532)
Q Consensus       495 ~s~~~~l~~~~Klili~lM~iGRl~~~~~---~gg~~~~  530 (532)
                      |   +++|+.+|++++++|++||+|++|+   ..+++||
T Consensus       449 ~---~~L~~~~K~vl~~~M~~GRLei~tvl~l~~p~fWr  484 (494)
T 3pjz_A          449 F---GDVNDKAKWVLIVSMLFGRLEIFTLLILLTPTFWR  484 (494)
T ss_dssp             C---SSSCHHHHHHHHHHHHHHHTTTHHHHTTSCSTTCC
T ss_pred             c---ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            4   5999999999999999999999998   5899998

PyMOL of 3pjz

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A	Back alignment and structure

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A	Back alignment and structure

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A	Back alignment and structure

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		532
d1p7ba2		116	Inward rectifier potassium channel Kirbac1.1 {Burk	93.53
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	88.14
d1xl4a2		116	Inward rectifier potassium channel kirbac3.1 {Magn	82.82
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	82.78

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=93.53  E-value=0.12  Score=41.78  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             cchhhHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCcccceeeecccccccCcceeeCCccC
Q 045632           20 TKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTH-STDPKTFDVFFTSVSAATDSSMGTVEMEVFS   98 (532)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~liGalll~l~~~~~~-~~~~s~~dAlF~avSa~t~TGls~v~~~~~~   98 (532)
                      ....-+|..+..++..+...........++...++.++.++....... ....++.||++-|+..+||.|.-  |...-+
T Consensus         8 ~p~~~~rd~~~~ll~~~~~~~l~~~~~~~~~~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYG--Di~P~t   85 (116)
T d1p7ba2           8 MPASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYG--DMHPQT   85 (116)
T ss_dssp             CCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCS--CCCCCS
T ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHhcccc--ccccCC
Confidence            344556777777776333233344445556566666666654221111 23458999999999999999975  333345


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHH
Q 045632           99 NSQLIIMTILMLAGGEVFMSML  120 (532)
Q Consensus        99 ~~~q~ii~~Li~iGGlG~~~~~  120 (532)
                      ..++++..+.+.+| +++..+.
T Consensus        86 ~~~~~~~~~~~~~g-~~~~a~~  106 (116)
T d1p7ba2          86 VYAHAIATLEIFVG-MSGIALS  106 (116)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHH
T ss_pred             cHHHHHHHHHHHHH-HHHHHHH
Confidence            67776665555544 5555443

PyMOL of d1p7ba2

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure